AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070614


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070614.t1 MTR_8g464450 97.610 753 15 2 1 750 1 753 0.0 1518
MS.gene070614.t1 MTR_3g055090 85.346 737 101 4 17 750 15 747 0.0 1290
MS.gene070614.t1 MTR_1g050535 52.755 726 304 8 53 746 99 817 0.0 746
MS.gene070614.t1 MTR_1g050535 52.755 726 304 8 53 746 99 817 0.0 746
MS.gene070614.t1 MTR_6g084700 51.719 698 311 7 47 729 101 787 0.0 730
MS.gene070614.t1 MTR_3g054420 74.519 208 40 2 543 750 88 282 8.66e-97 301
MS.gene070614.t1 MTR_3g113170 39.787 470 242 10 164 598 883 1346 3.74e-91 313
MS.gene070614.t1 MTR_3g055020 75.000 204 35 3 548 750 256 444 4.70e-91 292
MS.gene070614.t1 MTR_3g113170 39.787 470 242 10 164 598 883 1346 4.83e-91 313
MS.gene070614.t1 MTR_1g023510 38.367 490 238 12 164 598 867 1347 3.24e-89 308
MS.gene070614.t1 MTR_3g064370 30.263 456 284 13 163 603 29 465 5.95e-50 183
MS.gene070614.t1 MTR_3g449620 32.599 454 254 15 163 592 29 454 5.21e-43 163
MS.gene070614.t1 MTR_5g090300 32.379 454 255 15 163 592 29 454 8.66e-42 159
MS.gene070614.t1 MTR_3g064370 28.358 402 260 11 216 603 1 388 5.00e-37 144
MS.gene070614.t1 MTR_3g064370 29.428 367 232 9 163 515 29 382 3.23e-36 141
MS.gene070614.t1 MTR_2g039160 26.412 549 269 20 164 597 8 536 6.95e-33 134
MS.gene070614.t1 MTR_1g087420 48.462 130 30 2 98 227 1 93 1.81e-30 115
MS.gene070614.t1 MTR_1g087430 48.447 161 29 2 99 259 29 135 2.66e-29 113
MS.gene070614.t1 MTR_1g087400 55.000 100 24 1 161 260 2 80 7.80e-26 102
MS.gene070614.t1 MTR_3g033000 23.778 450 273 15 187 602 33 446 2.11e-20 95.9
MS.gene070614.t1 MTR_1g087410 36.207 174 42 3 30 203 20 124 4.00e-15 73.2
MS.gene070614.t1 MTR_4g079105 54.667 75 31 2 108 179 16 90 2.10e-14 71.2
MS.gene070614.t1 MTR_3g033000 24.190 401 233 16 187 552 33 397 2.35e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070614.t1 AT3G13682 63.431 752 258 7 1 748 1 739 0.0 963
MS.gene070614.t1 AT3G10390 52.347 703 317 4 53 737 127 829 0.0 768
MS.gene070614.t1 AT3G10390 52.347 703 317 4 53 737 127 829 0.0 768
MS.gene070614.t1 AT3G10390 52.489 703 316 4 53 737 75 777 0.0 768
MS.gene070614.t1 AT3G10390 52.489 703 316 4 53 737 75 777 0.0 766
MS.gene070614.t1 AT1G62830 50.912 713 310 8 47 737 147 841 0.0 724
MS.gene070614.t1 AT4G16310 36.364 495 255 10 161 600 617 1106 2.53e-85 296
MS.gene070614.t1 AT4G16310 36.364 495 255 10 161 600 617 1106 2.53e-85 296
MS.gene070614.t1 AT4G16310 36.364 495 255 10 161 600 617 1106 2.53e-85 296
MS.gene070614.t1 AT4G16310 36.364 495 255 10 161 600 617 1106 2.53e-85 296
MS.gene070614.t1 AT4G16310 36.364 495 255 10 161 600 617 1106 2.53e-85 296
MS.gene070614.t1 AT1G65840 31.760 466 272 14 151 589 7 453 5.66e-53 191
MS.gene070614.t1 AT3G59050 31.210 471 282 15 141 592 8 455 5.43e-50 183
MS.gene070614.t1 AT2G43020 31.264 435 261 14 175 592 41 454 3.20e-46 172
MS.gene070614.t1 AT4G29720 26.306 536 288 18 159 597 2 527 2.38e-29 123
MS.gene070614.t1 AT5G13700 22.791 430 269 16 187 589 30 423 1.35e-17 87.0

Find 205 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAATGGTCACATCAATTT+TGG 0.086176 8.1:+49754051 MS.gene070614:CDS
TACGGTTACCACACTGTTTC+TGG 0.149077 8.1:+49755047 MS.gene070614:CDS
GTTATTGGGGCTGGCCTTGC+TGG 0.167272 8.1:+49754129 MS.gene070614:CDS
TGCTAACCCTTTAGCGGTTT+TGG 0.210982 8.1:+49754308 MS.gene070614:CDS
TATGGAACTCAGGAAAATTA+TGG 0.250272 8.1:+49754461 MS.gene070614:CDS
CTATATGCAAACTACTTCTT+TGG 0.251699 8.1:-49756439 None:intergenic
GGTTGACGAAGGGACAAATT+AGG 0.256396 8.1:+49753971 MS.gene070614:CDS
CAAATCTTTCAGCTGCCTAT+TGG 0.265644 8.1:+49754625 MS.gene070614:CDS
GGAATCATATATTGGCTCTT+TGG 0.266064 8.1:+49753929 MS.gene070614:CDS
TCCCCGTTCGGCTTGAATAA+AGG 0.269156 8.1:-49754375 None:intergenic
TAATTCAGGTTCAAAATTAA+TGG 0.272612 8.1:-49754871 None:intergenic
AAGAGGCCTGATTTGGAATC+TGG 0.272960 8.1:+49756073 MS.gene070614:CDS
GAAGGGACGGTTATTGTTAT+TGG 0.282348 8.1:+49754114 MS.gene070614:CDS
AGCTGCAACTTTGTGGTATT+GGG 0.287968 8.1:-49756208 None:intergenic
TCAATTGAGAGGATGGGTTT+TGG 0.290843 8.1:+49754912 MS.gene070614:CDS
TGGGGCTGGCCTTGCTGGGT+TGG 0.300615 8.1:+49754134 MS.gene070614:CDS
TTTATTCAAGAGGCCTGATT+TGG 0.312443 8.1:+49756066 MS.gene070614:CDS
AAATCTTTCAGCTGCCTATT+GGG 0.313650 8.1:+49754626 MS.gene070614:CDS
TGTTGTTAGGAATCATATAT+TGG 0.316562 8.1:+49753921 MS.gene070614:CDS
GTTGTTGGGTCCTATATTCT+TGG 0.318926 8.1:-49756029 None:intergenic
AAACCTAGGTTTGAAGCTAA+TGG 0.326020 8.1:+49756315 MS.gene070614:CDS
AAGGGACGGTTATTGTTATT+GGG 0.327212 8.1:+49754115 MS.gene070614:CDS
GGAAGCGATCCCCTTTCTTA+TGG 0.332402 8.1:+49755797 MS.gene070614:CDS
TTCTTGGACAGGGACTTCTT+AGG 0.333102 8.1:-49756013 None:intergenic
TCTGGGGTTGTCTCAGAATT+AGG 0.333534 8.1:+49753874 MS.gene070614:CDS
AGAATGATTATGTTGTTGTT+AGG 0.339614 8.1:+49753908 MS.gene070614:CDS
CTTGAGCATGAGATTAGATC+TGG 0.343746 8.1:+49753856 MS.gene070614:CDS
AACCTAGGTTTGAAGCTAAT+GGG 0.349959 8.1:+49756316 MS.gene070614:CDS
GACGTAATAGCTAGCATTGC+TGG 0.353981 8.1:+49756367 MS.gene070614:CDS
TCAGGCACAGTGATACCTTT+AGG 0.355103 8.1:-49755746 None:intergenic
TATCTCCTTGTAACTTTCTT+CGG 0.357595 8.1:-49756173 None:intergenic
TTACTGAAGGAGATGAAAAT+AGG 0.359455 8.1:+49756275 MS.gene070614:CDS
CTTCAGATGGATCTGTTTCA+AGG 0.360488 8.1:+49753650 MS.gene070614:CDS
GTTGCTGATCACGGGTTAAC+TGG 0.361982 8.1:-49755985 None:intergenic
CTTGGTGGGAGCGTAATTAC+TGG 0.363012 8.1:+49754279 MS.gene070614:CDS
CTGGTACAAATTGATTGTAT+TGG 0.363637 8.1:-49755770 None:intergenic
TGGTTATAAGGTTGTTGTTT+TGG 0.368620 8.1:+49754182 MS.gene070614:CDS
GGGGAAGATCTGGACACATT+TGG 0.371404 8.1:+49754978 MS.gene070614:CDS
GGGAACCGACTGTTCTTTGC+AGG 0.371749 8.1:+49755884 MS.gene070614:CDS
GCCCTTTATTCAAGCCGAAC+GGG 0.374137 8.1:+49754373 MS.gene070614:CDS
TATCCAAACTCTTATCAAAA+AGG 0.375109 8.1:-49753735 None:intergenic
CCCCGTTCGGCTTGAATAAA+GGG 0.392381 8.1:-49754374 None:intergenic
TTACGCTCCCACCAAGATCT+AGG 0.393706 8.1:-49754272 None:intergenic
AAGCTGCAACTTTGTGGTAT+TGG 0.395140 8.1:-49756209 None:intergenic
TCCAATCGTCTTACTTCATC+GGG 0.395367 8.1:+49755130 MS.gene070614:CDS
TATATGCAAACTACTTCTTT+GGG 0.396059 8.1:-49756438 None:intergenic
TGCTCAAGCAAAGCATTCAT+TGG 0.396102 8.1:-49753841 None:intergenic
TCAGGATGATCCTTATGAAA+TGG 0.402302 8.1:+49754650 MS.gene070614:CDS
CATGTTAGTGTGCAATCATC+TGG 0.413221 8.1:+49755830 MS.gene070614:CDS
ACCTTATGCACCGTGCCTCT+TGG 0.413478 8.1:+49754831 MS.gene070614:CDS
AAATTCCCAGATTCCAAATC+AGG 0.417454 8.1:-49756079 None:intergenic
GCGATTCTGCAAATGACATT+TGG 0.420369 8.1:+49756145 MS.gene070614:CDS
AAGTCCCTGTCCAAGAATAT+AGG 0.421250 8.1:+49756019 MS.gene070614:CDS
AAGGGGATCGCTTCCCCATC+TGG 0.423563 8.1:-49755789 None:intergenic
TTGCAGGTGAGGCCACTTGT+AGG 0.423596 8.1:+49755900 MS.gene070614:CDS
CAAATTGATTGTATTGGATC+AGG 0.423632 8.1:-49755764 None:intergenic
TTATCGACCGGCTCCCCGTT+CGG 0.427986 8.1:-49754387 None:intergenic
TCCATATCTGATAGTGTTGA+CGG 0.429199 8.1:-49754757 None:intergenic
TTCAGCTGCCTATTGGGATC+AGG 0.430668 8.1:+49754632 MS.gene070614:CDS
TGGGTCCTATATTCTTGGAC+AGG 0.433363 8.1:-49756024 None:intergenic
TCCAAGAGGCACGGTGCATA+AGG 0.441287 8.1:-49754832 None:intergenic
TTATTGGGGCTGGCCTTGCT+GGG 0.442326 8.1:+49754130 MS.gene070614:CDS
AATCAAATGTTCAAACTCCT+TGG 0.448165 8.1:-49754004 None:intergenic
ATCATATATTGGCTCTTTGG+AGG 0.451981 8.1:+49753932 MS.gene070614:CDS
GTTGACGAAGGGACAAATTA+GGG 0.455104 8.1:+49753972 MS.gene070614:CDS
TGTCGTGCCAAAACCGCTAA+AGG 0.456486 8.1:-49754315 None:intergenic
GAACGGGGAGCCGGTCGATA+AGG 0.457646 8.1:+49754389 MS.gene070614:CDS
AGGATCATCCTGATCCCAAT+AGG 0.458755 8.1:-49754640 None:intergenic
AAGTTTGCGGCCCTAGATCT+TGG 0.458974 8.1:+49754261 MS.gene070614:CDS
ACGGTTATTGTTATTGGGGC+TGG 0.459282 8.1:+49754120 MS.gene070614:CDS
ATGGAACTCAGGAAAATTAT+GGG 0.459321 8.1:+49754462 MS.gene070614:CDS
ACCGTCCCTTCCGTCGCCTC+AGG 0.459381 8.1:-49754102 None:intergenic
TAAGTTGCTTGATAAAGTTA+TGG 0.461233 8.1:+49754443 MS.gene070614:CDS
AACTACTTCTTTGGGTCACC+GGG 0.462636 8.1:-49756430 None:intergenic
GAGGGTGTTGAGATTATTGC+TGG 0.462711 8.1:+49754783 MS.gene070614:CDS
CGGGTTGCGAGGTGATTGTT+CGG 0.465694 8.1:-49756411 None:intergenic
AGGACCCAACAACGGTATCT+TGG 0.467846 8.1:+49756039 MS.gene070614:CDS
TTAAGCGCTTTACTCATTGC+TGG 0.468818 8.1:+49756340 MS.gene070614:CDS
ACCGTCAACACTATCAGATA+TGG 0.473036 8.1:+49754756 MS.gene070614:CDS
TTCTCAGTTGCCTGAGGCGA+CGG 0.473734 8.1:+49754092 MS.gene070614:CDS
AAAGGCTTGTGCAGCTTCAC+CGG 0.474261 8.1:-49755096 None:intergenic
AAACTACTTCTTTGGGTCAC+CGG 0.475677 8.1:-49756431 None:intergenic
TTTGATAAGAGTTTGGATAG+TGG 0.476004 8.1:+49753739 MS.gene070614:CDS
TACAATCAATTTGTACCAGA+TGG 0.476612 8.1:+49755774 MS.gene070614:CDS
CAGGATGATCCTTATGAAAT+GGG 0.476783 8.1:+49754651 MS.gene070614:CDS
AGCATTGCTGGCTCCCGAAA+AGG 0.477129 8.1:+49756379 MS.gene070614:CDS
ATCCAATCGTCTTACTTCAT+CGG 0.478424 8.1:+49755129 MS.gene070614:CDS
ACTCGAATCAATTGAGAGGA+TGG 0.479143 8.1:+49754905 MS.gene070614:CDS
TCATATATTGGCTCTTTGGA+GGG 0.481204 8.1:+49753933 MS.gene070614:CDS
AGAGTATGAACCATAAGAAA+GGG 0.481470 8.1:-49755807 None:intergenic
ATGAGAAGCAGATGTTTGAT+TGG 0.483778 8.1:+49754562 MS.gene070614:CDS
GGACTTATTGCGCTTGTGGC+CGG 0.486841 8.1:+49755077 MS.gene070614:CDS
TACCTCACTTGGTTCAGTCT+TGG 0.488905 8.1:+49754500 MS.gene070614:CDS
GATTGGATCTGTGGTTTCAA+AGG 0.490322 8.1:-49755114 None:intergenic
CACACTGTTTCTGGTGGCGC+AGG 0.490701 8.1:+49755056 MS.gene070614:CDS
GAGAGTATGAACCATAAGAA+AGG 0.491737 8.1:-49755808 None:intergenic
ATTAACCAAGATACCGTTGT+TGG 0.492153 8.1:-49756044 None:intergenic
TTAACCAAGATACCGTTGTT+GGG 0.494812 8.1:-49756043 None:intergenic
CGCAGGACTTATTGCGCTTG+TGG 0.496869 8.1:+49755073 MS.gene070614:CDS
AATTCATGCTAACCCTTTAG+CGG 0.497817 8.1:+49754302 MS.gene070614:CDS
GAATCTATTTCCTTATCGAC+CGG 0.498377 8.1:-49754399 None:intergenic
GCACTTGATCAACCTGTTCA+CGG 0.499582 8.1:-49756246 None:intergenic
GACTGCGGATCTTCTGAGAA+AGG 0.502382 8.1:-49756118 None:intergenic
GCAACTCCTTCTTCTTCAGA+TGG 0.503196 8.1:+49753637 MS.gene070614:CDS
TGCAGAATCGCTTTCGACTG+CGG 0.505842 8.1:-49756133 None:intergenic
AATTTAGAATATGCAAATGC+TGG 0.506486 8.1:+49754594 MS.gene070614:CDS
CACTTGATCAACCTGTTCAC+GGG 0.507765 8.1:-49756245 None:intergenic
ACCCGATGAAGTAAGACGAT+TGG 0.508363 8.1:-49755131 None:intergenic
AGGACAAGGTTGCTGATCAC+GGG 0.510896 8.1:-49755993 None:intergenic
TTTGCAAGTGATACCTCACT+TGG 0.512520 8.1:+49754489 MS.gene070614:CDS
TGATCACCACCCATTTCATA+AGG 0.515455 8.1:-49754660 None:intergenic
CACTATCAGATATGGAAATG+AGG 0.518253 8.1:+49754764 MS.gene070614:CDS
TAGGACAAGGTTGCTGATCA+CGG 0.518479 8.1:-49755994 None:intergenic
AGTGTAAAGCTGCAACTTTG+TGG 0.519253 8.1:-49756215 None:intergenic
GTCGTGCCAAAACCGCTAAA+GGG 0.520176 8.1:-49754314 None:intergenic
ACAATCAATTTGTACCAGAT+GGG 0.522386 8.1:+49755775 MS.gene070614:CDS
GCTCAAGCAAAGCATTCATT+GGG 0.522520 8.1:-49753840 None:intergenic
CATTGGGAAACCAAGTGAAA+AGG 0.523949 8.1:-49753824 None:intergenic
ATTCAAGCCGAACGGGGAGC+CGG 0.525240 8.1:+49754380 MS.gene070614:CDS
AAAGCACCATGCATAGTGGC+TGG 0.525462 8.1:-49755929 None:intergenic
CTCGAATCAATTGAGAGGAT+GGG 0.526541 8.1:+49754906 MS.gene070614:CDS
TTGATAAAGTTATGGAACTC+AGG 0.527973 8.1:+49754451 MS.gene070614:CDS
TGAGTATAAACTCTGCCGCC+AGG 0.531196 8.1:-49754219 None:intergenic
ATCCCATTAGCTTCAAACCT+AGG 0.532436 8.1:-49756318 None:intergenic
AGAGGCCTGATTTGGAATCT+GGG 0.533383 8.1:+49756074 MS.gene070614:CDS
AATTAGGGAAACTGTGACCA+AGG 0.533763 8.1:+49753987 MS.gene070614:CDS
TGAATAAAGGGCAATTGTCT+CGG 0.534448 8.1:-49754362 None:intergenic
ATATATTGGCTCTTTGGAGG+GGG 0.534556 8.1:+49753935 MS.gene070614:CDS
TACTCAGAAGGTAGGGAATG+AGG 0.536162 8.1:+49754236 MS.gene070614:CDS
CTTTGGGTCACCGGGTTGCG+AGG 0.537572 8.1:-49756422 None:intergenic
TGCCCTTTATTCAAGCCGAA+CGG 0.538558 8.1:+49754372 MS.gene070614:CDS
AGAGTTTATACTCAGAAGGT+AGG 0.540847 8.1:+49754228 MS.gene070614:CDS
ACAGATCCATCTGAAGAAGA+AGG 0.548262 8.1:-49753643 None:intergenic
GCCTGAGGCGACGGAAGGGA+CGG 0.549638 8.1:+49754101 MS.gene070614:CDS
CATATATTGGCTCTTTGGAG+GGG 0.550345 8.1:+49753934 MS.gene070614:CDS
TACGCTCCCACCAAGATCTA+GGG 0.552157 8.1:-49754271 None:intergenic
CAGTTGCCTGAGGCGACGGA+AGG 0.552556 8.1:+49754096 MS.gene070614:CDS
TTGCGGCCCTAGATCTTGGT+GGG 0.554431 8.1:+49754265 MS.gene070614:CDS
ATGCATGGTGCTTTCATGAG+TGG 0.555512 8.1:+49755938 MS.gene070614:CDS
AGGGAATGAGGATAAGTTTG+CGG 0.556544 8.1:+49754248 MS.gene070614:CDS
TTTGCGGCCCTAGATCTTGG+TGG 0.559575 8.1:+49754264 MS.gene070614:CDS
AAGTAAGACGATTGGATCTG+TGG 0.560027 8.1:-49755123 None:intergenic
CGATAAGGAAATAGATTCAA+AGG 0.561482 8.1:+49754404 MS.gene070614:CDS
ATTCTGCAAATGACATTTGG+TGG 0.561799 8.1:+49756148 MS.gene070614:CDS
AGGGACGGTTATTGTTATTG+GGG 0.563624 8.1:+49754116 MS.gene070614:CDS
TTGAGCATGAGATTAGATCT+GGG 0.564471 8.1:+49753857 MS.gene070614:CDS
CCCTTTATTCAAGCCGAACG+GGG 0.565166 8.1:+49754374 MS.gene070614:CDS
TTGGAAGGTAGGAACCGTCC+TGG 0.566335 8.1:+49754201 MS.gene070614:CDS
TCTTGGTTAATTTATTCAAG+AGG 0.566827 8.1:+49756056 MS.gene070614:CDS
ACGAAAATAGTCATGATCGT+GGG 0.568316 8.1:+49755009 MS.gene070614:CDS
GACAGGGACTTCTTAGGACA+AGG 0.571305 8.1:-49756007 None:intergenic
GAGTTTATACTCAGAAGGTA+GGG 0.571675 8.1:+49754229 MS.gene070614:CDS
CAATATCCAGCCACTATGCA+TGG 0.572430 8.1:+49755923 MS.gene070614:CDS
ACTATCAGATATGGAAATGA+GGG 0.572545 8.1:+49754765 MS.gene070614:CDS
CATGAAAGCACCATGCATAG+TGG 0.574553 8.1:-49755933 None:intergenic
TTGATAAAAGCTATGTGTGA+AGG 0.575558 8.1:+49754711 MS.gene070614:CDS
GCTTCTGAACAAAATTGCAA+TGG 0.575771 8.1:+49754935 MS.gene070614:CDS
AACTCAGGAAAATTATGGGT+GGG 0.576931 8.1:+49754466 MS.gene070614:CDS
CGGCAGAGTTTATACTCAGA+AGG 0.577671 8.1:+49754224 MS.gene070614:CDS
GGGTCCTATATTCTTGGACA+GGG 0.585909 8.1:-49756023 None:intergenic
CCGACTGTTCTTTGCAGGTG+AGG 0.588042 8.1:+49755889 MS.gene070614:CDS
GATATACTTGCAGAAAACGT+GGG 0.595731 8.1:+49755863 MS.gene070614:CDS
GGCAATCATAGCCTCCGTGT+TGG 0.597313 8.1:-49753803 None:intergenic
TGATATACTTGCAGAAAACG+TGG 0.598569 8.1:+49755862 MS.gene070614:CDS
AGTTGCCTGAGGCGACGGAA+GGG 0.604727 8.1:+49754097 MS.gene070614:CDS
TTGCTGGGTTGGCTGCAGCG+AGG 0.604891 8.1:+49754145 MS.gene070614:CDS
GGGTTGTCTCAGAATTAGGC+GGG 0.606213 8.1:+49753878 MS.gene070614:CDS
GGTTACCACACTGTTTCTGG+TGG 0.606726 8.1:+49755050 MS.gene070614:CDS
GTTAGGAGGTGGTTGACGAA+GGG 0.608353 8.1:+49753961 MS.gene070614:CDS
TCGCTGCAGCCAACCCAGCA+AGG 0.608445 8.1:-49754143 None:intergenic
CGAAAATAGTCATGATCGTG+GGG 0.610184 8.1:+49755010 MS.gene070614:CDS
CAATCAATTTGTACCAGATG+GGG 0.610975 8.1:+49755776 MS.gene070614:CDS
GGCTGGATATTGCCTACAAG+TGG 0.610990 8.1:-49755912 None:intergenic
GAAAACTCGAATCAATTGAG+AGG 0.612634 8.1:+49754901 MS.gene070614:CDS
CTCCAAGACTGAACCAAGTG+AGG 0.615073 8.1:-49754502 None:intergenic
GTTTACTTCTCAGTTGCCTG+AGG 0.615221 8.1:+49754086 MS.gene070614:CDS
CGAACAATCACCTCGCAACC+CGG 0.615431 8.1:+49756412 MS.gene070614:CDS
TATAAACTCTGCCGCCAGGA+CGG 0.618038 8.1:-49754215 None:intergenic
TGTTAGGAGGTGGTTGACGA+AGG 0.619625 8.1:+49753960 MS.gene070614:CDS
GAACTCAGGAAAATTATGGG+TGG 0.620564 8.1:+49754465 MS.gene070614:CDS
CAAGTGCAGCAAATTACTGA+AGG 0.627123 8.1:+49756262 MS.gene070614:CDS
ACTCAAGAATTTATATGCGG+TGG 0.627955 8.1:+49754527 MS.gene070614:CDS
TTTCAGAACTCCAAGAGGCA+CGG 0.631927 8.1:-49754841 None:intergenic
AGGGTGTTGAGATTATTGCT+GGG 0.635301 8.1:+49754784 MS.gene070614:CDS
AACGAAAATAGTCATGATCG+TGG 0.635661 8.1:+49755008 MS.gene070614:CDS
CTGGCTCCCGAAAAGGAAGG+AGG 0.640127 8.1:+49756386 MS.gene070614:CDS
TTGTCTCGGACTTTATGAAG+CGG 0.650292 8.1:-49754348 None:intergenic
GGGGTTGTCTCAGAATTAGG+CGG 0.650971 8.1:+49753877 MS.gene070614:CDS
CCTCACCTGCAAAGAACAGT+CGG 0.652793 8.1:-49755889 None:intergenic
AATTATCGTAGTTACGACGA+GGG 0.656144 8.1:+49753697 MS.gene070614:CDS
GAGTATGAACCATAAGAAAG+GGG 0.659942 8.1:-49755806 None:intergenic
TTGCTGGCTCCCGAAAAGGA+AGG 0.662888 8.1:+49756383 MS.gene070614:CDS
TGGTACCGAAGAAAGTTACA+AGG 0.666856 8.1:+49756168 MS.gene070614:CDS
TGAGCATGAGATTAGATCTG+GGG 0.673661 8.1:+49753858 MS.gene070614:CDS
GGGTGTTGAGATTATTGCTG+GGG 0.673661 8.1:+49754785 MS.gene070614:CDS
GACACTCAAGAATTTATATG+CGG 0.675104 8.1:+49754524 MS.gene070614:CDS
ATATACTTGCAGAAAACGTG+GGG 0.688410 8.1:+49755864 MS.gene070614:CDS
GAATTATCGTAGTTACGACG+AGG 0.695078 8.1:+49753696 MS.gene070614:CDS
GAAGGTAGGAACCGTCCTGG+CGG 0.707193 8.1:+49754204 MS.gene070614:CDS
GGCAACTGAGAAGTAAACGA+CGG 0.708462 8.1:-49754081 None:intergenic
CTGCGCCACCAGAAACAGTG+TGG 0.728799 8.1:-49755055 None:intergenic
AAGAATATAGGACCCAACAA+CGG 0.742770 8.1:+49756031 MS.gene070614:CDS
GATGATCCTTATGAAATGGG+TGG 0.747125 8.1:+49754654 MS.gene070614:CDS
TATTCAGAAAGAAACCAACA+CGG 0.760530 8.1:+49753789 MS.gene070614:CDS
TCAGAAAGAAACCAACACGG+AGG 0.771882 8.1:+49753792 MS.gene070614:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTTTTTTCTG+AGG + chr8.1:49755518-49755537 MS.gene070614:intron 10.0%
!!! CAATTTATATATTTTTCTAC+AGG + chr8.1:49755713-49755732 MS.gene070614:intron 15.0%
!!! TCACATGATTTTAATTTATT+TGG + chr8.1:49755402-49755421 MS.gene070614:intron 15.0%
!! CACTGTTAAAAAAAAAAATG+TGG + chr8.1:49755680-49755699 MS.gene070614:intron 20.0%
!! GGTTGTTCATTAAATTATAT+GGG + chr8.1:49755189-49755208 MS.gene070614:intron 20.0%
!! TGGTTGTTCATTAAATTATA+TGG + chr8.1:49755188-49755207 MS.gene070614:intron 20.0%
!!! TAATTCAGGTTCAAAATTAA+TGG - chr8.1:49754874-49754893 None:intergenic 20.0%
!!! TATGACTATCTTTTGTATAA+TGG + chr8.1:49754036-49754055 MS.gene070614:CDS 20.0%
! ATCAAATAACACCTAAAACA+GGG - chr8.1:49755243-49755262 None:intergenic 25.0%
! TAAGTTGCTTGATAAAGTTA+TGG + chr8.1:49754443-49754462 MS.gene070614:CDS 25.0%
! TATCAAATAACACCTAAAAC+AGG - chr8.1:49755244-49755263 None:intergenic 25.0%
! TATCCAAACTCTTATCAAAA+AGG - chr8.1:49753738-49753757 None:intergenic 25.0%
! TCATATTTGACAAAAAACCT+AGG + chr8.1:49756301-49756320 MS.gene070614:CDS 25.0%
! TCTTGGTTAATTTATTCAAG+AGG + chr8.1:49756056-49756075 MS.gene070614:CDS 25.0%
! TGTTGTTAGGAATCATATAT+TGG + chr8.1:49753921-49753940 MS.gene070614:CDS 25.0%
!! AATTTAGAATATGCAAATGC+TGG + chr8.1:49754594-49754613 MS.gene070614:CDS 25.0%
!! ACGGTCTTTTCATAAAAAAT+AGG - chr8.1:49754741-49754760 None:intergenic 25.0%
!! AGAATGATTATGTTGTTGTT+AGG + chr8.1:49753908-49753927 MS.gene070614:CDS 25.0%
!! ATAATGGTCACATCAATTTT+GGG + chr8.1:49754052-49754071 MS.gene070614:CDS 25.0%
!! TATAATGGTCACATCAATTT+TGG + chr8.1:49754051-49754070 MS.gene070614:CDS 25.0%
!! TGTGATTCATATTGATGATA+TGG - chr8.1:49755387-49755406 None:intergenic 25.0%
!!! GTTTTAGGTGTTATTTGATA+GGG + chr8.1:49755244-49755263 MS.gene070614:intron 25.0%
!!! TGTTTTAGGTGTTATTTGAT+AGG + chr8.1:49755243-49755262 MS.gene070614:intron 25.0%
!!! TTATTTTTTTCTGAGGCTTA+TGG + chr8.1:49755525-49755544 MS.gene070614:intron 25.0%
!!! TTGTACGATTTGATTTGATT+TGG + chr8.1:49755287-49755306 MS.gene070614:intron 25.0%
AATCAAATGTTCAAACTCCT+TGG - chr8.1:49754007-49754026 None:intergenic 30.0%
AATTGTGAGCTAGAAATTGA+GGG - chr8.1:49755563-49755582 None:intergenic 30.0%
ACAATCAATTTGTACCAGAT+GGG + chr8.1:49755775-49755794 MS.gene070614:CDS 30.0%
ACTATCAGATATGGAAATGA+GGG + chr8.1:49754765-49754784 MS.gene070614:CDS 30.0%
AGAGTATGAACCATAAGAAA+GGG - chr8.1:49755810-49755829 None:intergenic 30.0%
ATGGAACTCAGGAAAATTAT+GGG + chr8.1:49754462-49754481 MS.gene070614:CDS 30.0%
CAAATTGATTGTATTGGATC+AGG - chr8.1:49755767-49755786 None:intergenic 30.0%
CGATAAGGAAATAGATTCAA+AGG + chr8.1:49754404-49754423 MS.gene070614:CDS 30.0%
CTGGTACAAATTGATTGTAT+TGG - chr8.1:49755773-49755792 None:intergenic 30.0%
CTTACCATGTGAAACTTATT+TGG + chr8.1:49755451-49755470 MS.gene070614:intron 30.0%
GACACTCAAGAATTTATATG+CGG + chr8.1:49754524-49754543 MS.gene070614:CDS 30.0%
TAATTGTGAGCTAGAAATTG+AGG - chr8.1:49755564-49755583 None:intergenic 30.0%
TACAATCAATTTGTACCAGA+TGG + chr8.1:49755774-49755793 MS.gene070614:CDS 30.0%
TATCTCCTTGTAACTTTCTT+CGG - chr8.1:49756176-49756195 None:intergenic 30.0%
TATGGAACTCAGGAAAATTA+TGG + chr8.1:49754461-49754480 MS.gene070614:CDS 30.0%
TATTCAGAAAGAAACCAACA+CGG + chr8.1:49753789-49753808 MS.gene070614:CDS 30.0%
TCAAATAACACCTAAAACAG+GGG - chr8.1:49755242-49755261 None:intergenic 30.0%
TTACTGAAGGAGATGAAAAT+AGG + chr8.1:49756275-49756294 MS.gene070614:CDS 30.0%
TTGATAAAAGCTATGTGTGA+AGG + chr8.1:49754711-49754730 MS.gene070614:CDS 30.0%
TTGATAAAGTTATGGAACTC+AGG + chr8.1:49754451-49754470 MS.gene070614:CDS 30.0%
TTTGATAAGAGTTTGGATAG+TGG + chr8.1:49753739-49753758 MS.gene070614:CDS 30.0%
! TAATGGTCACATCAATTTTG+GGG + chr8.1:49754053-49754072 MS.gene070614:CDS 30.0%
! TGACCTTTTTGATAAGAGTT+TGG + chr8.1:49753732-49753751 MS.gene070614:CDS 30.0%
!! ACAGGTATTTTTCAACCTAA+AGG + chr8.1:49755731-49755750 MS.gene070614:intron 30.0%
!!! GGGGAGTTCTTTTTATTTTA+CGG + chr8.1:49755029-49755048 MS.gene070614:CDS 30.0%
!!! TATAAGGTTGTTGTTTTGGA+AGG + chr8.1:49754186-49754205 MS.gene070614:CDS 30.0%
!!! TGGTTATAAGGTTGTTGTTT+TGG + chr8.1:49754182-49754201 MS.gene070614:CDS 30.0%
AAATAACACCTAAAACAGGG+GGG - chr8.1:49755240-49755259 None:intergenic 35.0%
AAATCTTTCAGCTGCCTATT+GGG + chr8.1:49754626-49754645 MS.gene070614:CDS 35.0%
AAATTCCCAGATTCCAAATC+AGG - chr8.1:49756082-49756101 None:intergenic 35.0%
AACGAAAATAGTCATGATCG+TGG + chr8.1:49755008-49755027 MS.gene070614:CDS 35.0%
AACTCAGGAAAATTATGGGT+GGG + chr8.1:49754466-49754485 MS.gene070614:CDS 35.0%
AAGAATATAGGACCCAACAA+CGG + chr8.1:49756031-49756050 MS.gene070614:CDS 35.0%
AATTATCGTAGTTACGACGA+GGG + chr8.1:49753697-49753716 MS.gene070614:CDS 35.0%
AATTCATGCTAACCCTTTAG+CGG + chr8.1:49754302-49754321 MS.gene070614:CDS 35.0%
ACGAAAATAGTCATGATCGT+GGG + chr8.1:49755009-49755028 MS.gene070614:CDS 35.0%
ACTCAAGAATTTATATGCGG+TGG + chr8.1:49754527-49754546 MS.gene070614:CDS 35.0%
AGAGTTTATACTCAGAAGGT+AGG + chr8.1:49754228-49754247 MS.gene070614:CDS 35.0%
ATATACTTGCAGAAAACGTG+GGG + chr8.1:49755864-49755883 MS.gene070614:CDS 35.0%
ATCCAATCGTCTTACTTCAT+CGG + chr8.1:49755129-49755148 MS.gene070614:CDS 35.0%
ATCGCCAAATAAGTTTCACA+TGG - chr8.1:49755458-49755477 None:intergenic 35.0%
ATGAGAAGCAGATGTTTGAT+TGG + chr8.1:49754562-49754581 MS.gene070614:CDS 35.0%
ATTAACCAAGATACCGTTGT+TGG - chr8.1:49756047-49756066 None:intergenic 35.0%
ATTCTGCAAATGACATTTGG+TGG + chr8.1:49756148-49756167 MS.gene070614:CDS 35.0%
ATTGTGAGCTAGAAATTGAG+GGG - chr8.1:49755562-49755581 None:intergenic 35.0%
CAAATAACACCTAAAACAGG+GGG - chr8.1:49755241-49755260 None:intergenic 35.0%
CAATCAATTTGTACCAGATG+GGG + chr8.1:49755776-49755795 MS.gene070614:CDS 35.0%
CACTATCAGATATGGAAATG+AGG + chr8.1:49754764-49754783 MS.gene070614:CDS 35.0%
CAGGATGATCCTTATGAAAT+GGG + chr8.1:49754651-49754670 MS.gene070614:CDS 35.0%
GAAAACTCGAATCAATTGAG+AGG + chr8.1:49754901-49754920 MS.gene070614:CDS 35.0%
GAATCTATTTCCTTATCGAC+CGG - chr8.1:49754402-49754421 None:intergenic 35.0%
GAGTATGAACCATAAGAAAG+GGG - chr8.1:49755809-49755828 None:intergenic 35.0%
GAGTTTATACTCAGAAGGTA+GGG + chr8.1:49754229-49754248 MS.gene070614:CDS 35.0%
GATATACTTGCAGAAAACGT+GGG + chr8.1:49755863-49755882 MS.gene070614:CDS 35.0%
GCTTCTGAACAAAATTGCAA+TGG + chr8.1:49754935-49754954 MS.gene070614:CDS 35.0%
TCAGGATGATCCTTATGAAA+TGG + chr8.1:49754650-49754669 MS.gene070614:CDS 35.0%
TGAATAAAGGGCAATTGTCT+CGG - chr8.1:49754365-49754384 None:intergenic 35.0%
TGATATACTTGCAGAAAACG+TGG + chr8.1:49755862-49755881 MS.gene070614:CDS 35.0%
TTAACCAAGATACCGTTGTT+GGG - chr8.1:49756046-49756065 None:intergenic 35.0%
TTGAGCATGAGATTAGATCT+GGG + chr8.1:49753857-49753876 MS.gene070614:CDS 35.0%
TTTATTCAAGAGGCCTGATT+TGG + chr8.1:49756066-49756085 MS.gene070614:CDS 35.0%
! AAACCTAGGTTTGAAGCTAA+TGG + chr8.1:49756315-49756334 MS.gene070614:CDS 35.0%
! AACCTAGGTTTGAAGCTAAT+GGG + chr8.1:49756316-49756335 MS.gene070614:CDS 35.0%
! AAGGGACGGTTATTGTTATT+GGG + chr8.1:49754115-49754134 MS.gene070614:CDS 35.0%
! AGTTTTCTTGCAGGTAATTC+AGG - chr8.1:49754888-49754907 None:intergenic 35.0%
! GAGAGTATGAACCATAAGAA+AGG - chr8.1:49755811-49755830 None:intergenic 35.0%
! GGTTTTTCCACATGTGTTTT+GGG + chr8.1:49754956-49754975 MS.gene070614:CDS 35.0%
! GTTTTTCCACATGTGTTTTG+GGG + chr8.1:49754957-49754976 MS.gene070614:CDS 35.0%
! TCCATATCTGATAGTGTTGA+CGG - chr8.1:49754760-49754779 None:intergenic 35.0%
! TGGTTTTTCCACATGTGTTT+TGG + chr8.1:49754955-49754974 MS.gene070614:CDS 35.0%
!! ATCATATATTGGCTCTTTGG+AGG + chr8.1:49753932-49753951 MS.gene070614:CDS 35.0%
!! GCTTTTGTCGTTTGGTTATA+AGG + chr8.1:49754170-49754189 MS.gene070614:CDS 35.0%
!! GGAATCATATATTGGCTCTT+TGG + chr8.1:49753929-49753948 MS.gene070614:CDS 35.0%
!! TCATATATTGGCTCTTTGGA+GGG + chr8.1:49753933-49753952 MS.gene070614:CDS 35.0%
!! TCTTGGAGTTCTGAAAAAGA+AGG + chr8.1:49754848-49754867 MS.gene070614:CDS 35.0%
!! TTTTTCCACATGTGTTTTGG+GGG + chr8.1:49754958-49754977 MS.gene070614:CDS 35.0%
!!! ATTGATTCGAGTTTTCTTGC+AGG - chr8.1:49754897-49754916 None:intergenic 35.0%
!!! TTCTTTTTCAGAACTCCAAG+AGG - chr8.1:49754849-49754868 None:intergenic 35.0%
AAGCTGCAACTTTGTGGTAT+TGG - chr8.1:49756212-49756231 None:intergenic 40.0%
AAGTAAGACGATTGGATCTG+TGG - chr8.1:49755126-49755145 None:intergenic 40.0%
AAGTCCCTGTCCAAGAATAT+AGG + chr8.1:49756019-49756038 MS.gene070614:CDS 40.0%
AATAACACCTAAAACAGGGG+GGG - chr8.1:49755239-49755258 None:intergenic 40.0%
AATTAGGGAAACTGTGACCA+AGG + chr8.1:49753987-49754006 MS.gene070614:CDS 40.0%
ACAGATCCATCTGAAGAAGA+AGG - chr8.1:49753646-49753665 None:intergenic 40.0%
ACCGTCAACACTATCAGATA+TGG + chr8.1:49754756-49754775 MS.gene070614:CDS 40.0%
ACTCGAATCAATTGAGAGGA+TGG + chr8.1:49754905-49754924 MS.gene070614:CDS 40.0%
AGCTGCAACTTTGTGGTATT+GGG - chr8.1:49756211-49756230 None:intergenic 40.0%
AGGGAATGAGGATAAGTTTG+CGG + chr8.1:49754248-49754267 MS.gene070614:CDS 40.0%
AGTGTAAAGCTGCAACTTTG+TGG - chr8.1:49756218-49756237 None:intergenic 40.0%
CAAATCTTTCAGCTGCCTAT+TGG + chr8.1:49754625-49754644 MS.gene070614:CDS 40.0%
CAAGTGCAGCAAATTACTGA+AGG + chr8.1:49756262-49756281 MS.gene070614:CDS 40.0%
CATGTTAGTGTGCAATCATC+TGG + chr8.1:49755830-49755849 MS.gene070614:CDS 40.0%
CATTGGGAAACCAAGTGAAA+AGG - chr8.1:49753827-49753846 None:intergenic 40.0%
CGAAAATAGTCATGATCGTG+GGG + chr8.1:49755010-49755029 MS.gene070614:CDS 40.0%
CTCGAATCAATTGAGAGGAT+GGG + chr8.1:49754906-49754925 MS.gene070614:CDS 40.0%
CTTCAGATGGATCTGTTTCA+AGG + chr8.1:49753650-49753669 MS.gene070614:CDS 40.0%
CTTGAGCATGAGATTAGATC+TGG + chr8.1:49753856-49753875 MS.gene070614:CDS 40.0%
GAACAACCACAATAAGAGAG+AGG - chr8.1:49755177-49755196 None:intergenic 40.0%
GAACTCAGGAAAATTATGGG+TGG + chr8.1:49754465-49754484 MS.gene070614:CDS 40.0%
GAAGGGACGGTTATTGTTAT+TGG + chr8.1:49754114-49754133 MS.gene070614:CDS 40.0%
GAATTATCGTAGTTACGACG+AGG + chr8.1:49753696-49753715 MS.gene070614:CDS 40.0%
GATGATCCTTATGAAATGGG+TGG + chr8.1:49754654-49754673 MS.gene070614:CDS 40.0%
GATTGGATCTGTGGTTTCAA+AGG - chr8.1:49755117-49755136 None:intergenic 40.0%
GCGATTCTGCAAATGACATT+TGG + chr8.1:49756145-49756164 MS.gene070614:CDS 40.0%
GTTGACGAAGGGACAAATTA+GGG + chr8.1:49753972-49753991 MS.gene070614:CDS 40.0%
GTTGTTGGGTCCTATATTCT+TGG - chr8.1:49756032-49756051 None:intergenic 40.0%
TCACATGGTAAGCAAGTGAA+TGG - chr8.1:49755443-49755462 None:intergenic 40.0%
TCCAATCGTCTTACTTCATC+GGG + chr8.1:49755130-49755149 MS.gene070614:CDS 40.0%
TGAGCATGAGATTAGATCTG+GGG + chr8.1:49753858-49753877 MS.gene070614:CDS 40.0%
TGATCACCACCCATTTCATA+AGG - chr8.1:49754663-49754682 None:intergenic 40.0%
TTAAGCGCTTTACTCATTGC+TGG + chr8.1:49756340-49756359 MS.gene070614:CDS 40.0%
TTGTCTCGGACTTTATGAAG+CGG - chr8.1:49754351-49754370 None:intergenic 40.0%
TTGTGAGCTAGAAATTGAGG+GGG - chr8.1:49755561-49755580 None:intergenic 40.0%
TTTGCAAGTGATACCTCACT+TGG + chr8.1:49754489-49754508 MS.gene070614:CDS 40.0%
! AAGGTACCTCTCTCTTATTG+TGG + chr8.1:49755168-49755187 MS.gene070614:intron 40.0%
! AGGGACGGTTATTGTTATTG+GGG + chr8.1:49754116-49754135 MS.gene070614:CDS 40.0%
! ATCCCATTAGCTTCAAACCT+AGG - chr8.1:49756321-49756340 None:intergenic 40.0%
! CACTATTTTATCCCGTGAAC+AGG + chr8.1:49756234-49756253 MS.gene070614:CDS 40.0%
! GATCATTGTTTTCTTGCTGG+AGG + chr8.1:49754678-49754697 MS.gene070614:CDS 40.0%
! GCACTTTGACTTATGATGCA+TGG + chr8.1:49755493-49755512 MS.gene070614:intron 40.0%
! GCTATGATTGCCTTTTCACT+TGG + chr8.1:49753814-49753833 MS.gene070614:CDS 40.0%
! GCTCAAGCAAAGCATTCATT+GGG - chr8.1:49753843-49753862 None:intergenic 40.0%
! GGTGATCATTGTTTTCTTGC+TGG + chr8.1:49754675-49754694 MS.gene070614:CDS 40.0%
! GTTTTCTTGCTGGAGGAAAT+TGG + chr8.1:49754685-49754704 MS.gene070614:CDS 40.0%
! TGCTCAAGCAAAGCATTCAT+TGG - chr8.1:49753844-49753863 None:intergenic 40.0%
! TGGTACCGAAGAAAGTTACA+AGG + chr8.1:49756168-49756187 MS.gene070614:CDS 40.0%
!! AGGGTGTTGAGATTATTGCT+GGG + chr8.1:49754784-49754803 MS.gene070614:CDS 40.0%
!! ATATATTGGCTCTTTGGAGG+GGG + chr8.1:49753935-49753954 MS.gene070614:CDS 40.0%
!! CAATTGAGAGGATGGGTTTT+GGG + chr8.1:49754913-49754932 MS.gene070614:CDS 40.0%
!! CATATATTGGCTCTTTGGAG+GGG + chr8.1:49753934-49753953 MS.gene070614:CDS 40.0%
!! TCAATTGAGAGGATGGGTTT+TGG + chr8.1:49754912-49754931 MS.gene070614:CDS 40.0%
!! TTTTCCACATGTGTTTTGGG+GGG + chr8.1:49754959-49754978 MS.gene070614:CDS 40.0%
!!! AGGTTGTTGTTTTGGAAGGT+AGG + chr8.1:49754190-49754209 MS.gene070614:CDS 40.0%
!!! CGGGTTTTGAACACTCTAAA+AGG + chr8.1:49755149-49755168 MS.gene070614:CDS 40.0%
ACCCGATGAAGTAAGACGAT+TGG - chr8.1:49755134-49755153 None:intergenic 45.0%
AGGATCATCCTGATCCCAAT+AGG - chr8.1:49754643-49754662 None:intergenic 45.0%
ATGCATGGTGCTTTCATGAG+TGG + chr8.1:49755938-49755957 MS.gene070614:CDS 45.0%
CAATATCCAGCCACTATGCA+TGG + chr8.1:49755923-49755942 MS.gene070614:CDS 45.0%
CACTTGATCAACCTGTTCAC+GGG - chr8.1:49756248-49756267 None:intergenic 45.0%
CGGCAGAGTTTATACTCAGA+AGG + chr8.1:49754224-49754243 MS.gene070614:CDS 45.0%
GACGTAATAGCTAGCATTGC+TGG + chr8.1:49756367-49756386 MS.gene070614:CDS 45.0%
GCAACTCCTTCTTCTTCAGA+TGG + chr8.1:49753637-49753656 MS.gene070614:CDS 45.0%
GCACTTGATCAACCTGTTCA+CGG - chr8.1:49756249-49756268 None:intergenic 45.0%
GGCAACTGAGAAGTAAACGA+CGG - chr8.1:49754084-49754103 None:intergenic 45.0%
GGGGAAGGAAAATGTGCAAA+AGG - chr8.1:49755220-49755239 None:intergenic 45.0%
GGGTCCTATATTCTTGGACA+GGG - chr8.1:49756026-49756045 None:intergenic 45.0%
GGTTGACGAAGGGACAAATT+AGG + chr8.1:49753971-49753990 MS.gene070614:CDS 45.0%
GTTTACTTCTCAGTTGCCTG+AGG + chr8.1:49754086-49754105 MS.gene070614:CDS 45.0%
TACCTCACTTGGTTCAGTCT+TGG + chr8.1:49754500-49754519 MS.gene070614:CDS 45.0%
TACGGTTACCACACTGTTTC+TGG + chr8.1:49755047-49755066 MS.gene070614:CDS 45.0%
TACTCAGAAGGTAGGGAATG+AGG + chr8.1:49754236-49754255 MS.gene070614:CDS 45.0%
TAGGACAAGGTTGCTGATCA+CGG - chr8.1:49755997-49756016 None:intergenic 45.0%
TCAGAAAGAAACCAACACGG+AGG + chr8.1:49753792-49753811 MS.gene070614:CDS 45.0%
TCAGGCACAGTGATACCTTT+AGG - chr8.1:49755749-49755768 None:intergenic 45.0%
TGCCCTTTATTCAAGCCGAA+CGG + chr8.1:49754372-49754391 MS.gene070614:CDS 45.0%
TGGGTCCTATATTCTTGGAC+AGG - chr8.1:49756027-49756046 None:intergenic 45.0%
TGGTAAGCAAGTGAATGGAG+AGG - chr8.1:49755438-49755457 None:intergenic 45.0%
TGTGAGCTAGAAATTGAGGG+GGG - chr8.1:49755560-49755579 None:intergenic 45.0%
TTCTTGGACAGGGACTTCTT+AGG - chr8.1:49756016-49756035 None:intergenic 45.0%
TTTCAGAACTCCAAGAGGCA+CGG - chr8.1:49754844-49754863 None:intergenic 45.0%
! ACGGTTATTGTTATTGGGGC+TGG + chr8.1:49754120-49754139 MS.gene070614:CDS 45.0%
! TCTGGGGTTGTCTCAGAATT+AGG + chr8.1:49753874-49753893 MS.gene070614:CDS 45.0%
! TGCTAACCCTTTAGCGGTTT+TGG + chr8.1:49754308-49754327 MS.gene070614:CDS 45.0%
! TTCGGTTCCTCCTTCCTTTT+CGG - chr8.1:49756396-49756415 None:intergenic 45.0%
!! AAGAGGCCTGATTTGGAATC+TGG + chr8.1:49756073-49756092 MS.gene070614:CDS 45.0%
!! AGAGGCCTGATTTGGAATCT+GGG + chr8.1:49756074-49756093 MS.gene070614:CDS 45.0%
!! CATGAAAGCACCATGCATAG+TGG - chr8.1:49755936-49755955 None:intergenic 45.0%
!! GAGGGTGTTGAGATTATTGC+TGG + chr8.1:49754783-49754802 MS.gene070614:CDS 45.0%
!! GGGTGTTGAGATTATTGCTG+GGG + chr8.1:49754785-49754804 MS.gene070614:CDS 45.0%
!! TTCAATAAAAAAATATTTAA+TGG - chr8.1:49755600-49755619 None:intergenic 5.0%
AAAGGCTTGTGCAGCTTCAC+CGG - chr8.1:49755099-49755118 None:intergenic 50.0%
AAGTTTGCGGCCCTAGATCT+TGG + chr8.1:49754261-49754280 MS.gene070614:CDS 50.0%
AGGACAAGGTTGCTGATCAC+GGG - chr8.1:49755996-49756015 None:intergenic 50.0%
AGGACCCAACAACGGTATCT+TGG + chr8.1:49756039-49756058 MS.gene070614:CDS 50.0%
CCCTTTATTCAAGCCGAACG+GGG + chr8.1:49754374-49754393 MS.gene070614:CDS 50.0%
CCTCACCTGCAAAGAACAGT+CGG - chr8.1:49755892-49755911 None:intergenic 50.0%
CTCCAAGACTGAACCAAGTG+AGG - chr8.1:49754505-49754524 None:intergenic 50.0%
GACAGGGACTTCTTAGGACA+AGG - chr8.1:49756010-49756029 None:intergenic 50.0%
GCCCTTTATTCAAGCCGAAC+GGG + chr8.1:49754373-49754392 MS.gene070614:CDS 50.0%
GGAAGCGATCCCCTTTCTTA+TGG + chr8.1:49755797-49755816 MS.gene070614:CDS 50.0%
GGCTGGATATTGCCTACAAG+TGG - chr8.1:49755915-49755934 None:intergenic 50.0%
GGGGAAGATCTGGACACATT+TGG + chr8.1:49754978-49754997 MS.gene070614:CDS 50.0%
GGGGTTGTCTCAGAATTAGG+CGG + chr8.1:49753877-49753896 MS.gene070614:CDS 50.0%
GGGTTGTCTCAGAATTAGGC+GGG + chr8.1:49753878-49753897 MS.gene070614:CDS 50.0%
GTCGTGCCAAAACCGCTAAA+GGG - chr8.1:49754317-49754336 None:intergenic 50.0%
GTTAGGAGGTGGTTGACGAA+GGG + chr8.1:49753961-49753980 MS.gene070614:CDS 50.0%
TACGCTCCCACCAAGATCTA+GGG - chr8.1:49754274-49754293 None:intergenic 50.0%
TATAAACTCTGCCGCCAGGA+CGG - chr8.1:49754218-49754237 None:intergenic 50.0%
TCTTCCCCCCAAAACACATG+TGG - chr8.1:49754966-49754985 None:intergenic 50.0%
TGAGTATAAACTCTGCCGCC+AGG - chr8.1:49754222-49754241 None:intergenic 50.0%
TGCAGAATCGCTTTCGACTG+CGG - chr8.1:49756136-49756155 None:intergenic 50.0%
TGTCGTGCCAAAACCGCTAA+AGG - chr8.1:49754318-49754337 None:intergenic 50.0%
TGTTAGGAGGTGGTTGACGA+AGG + chr8.1:49753960-49753979 MS.gene070614:CDS 50.0%
TTACGCTCCCACCAAGATCT+AGG - chr8.1:49754275-49754294 None:intergenic 50.0%
TTCAGCTGCCTATTGGGATC+AGG + chr8.1:49754632-49754651 MS.gene070614:CDS 50.0%
TTTGGAGGGGGAATGTTAGG+AGG + chr8.1:49753947-49753966 MS.gene070614:CDS 50.0%
! AAAGCACCATGCATAGTGGC+TGG - chr8.1:49755932-49755951 None:intergenic 50.0%
! CCCCGTTCGGCTTGAATAAA+GGG - chr8.1:49754377-49754396 None:intergenic 50.0%
! CTCTTTGGAGGGGGAATGTT+AGG + chr8.1:49753944-49753963 MS.gene070614:CDS 50.0%
! CTTGGTGGGAGCGTAATTAC+TGG + chr8.1:49754279-49754298 MS.gene070614:CDS 50.0%
! GACTGCGGATCTTCTGAGAA+AGG - chr8.1:49756121-49756140 None:intergenic 50.0%
! GTTGCTGATCACGGGTTAAC+TGG - chr8.1:49755988-49756007 None:intergenic 50.0%
! TCCCCGTTCGGCTTGAATAA+AGG - chr8.1:49754378-49754397 None:intergenic 50.0%
! TCGGTTCCTCCTTCCTTTTC+GGG - chr8.1:49756395-49756414 None:intergenic 50.0%
! TTTCCTTCCCCCCCTGTTTT+AGG + chr8.1:49755229-49755248 MS.gene070614:intron 50.0%
!! GGTTACCACACTGTTTCTGG+TGG + chr8.1:49755050-49755069 MS.gene070614:CDS 50.0%
!!! TGTGTTTTGGGGGGAAGATC+TGG + chr8.1:49754968-49754987 MS.gene070614:CDS 50.0%
ACACCTAAAACAGGGGGGGA+AGG - chr8.1:49755235-49755254 None:intergenic 55.0%
ACCTTATGCACCGTGCCTCT+TGG + chr8.1:49754831-49754850 MS.gene070614:CDS 55.0%
CCGACTGTTCTTTGCAGGTG+AGG + chr8.1:49755889-49755908 MS.gene070614:CDS 55.0%
CGAACAATCACCTCGCAACC+CGG + chr8.1:49756412-49756431 MS.gene070614:CDS 55.0%
CGCAGGACTTATTGCGCTTG+TGG + chr8.1:49755073-49755092 MS.gene070614:CDS 55.0%
CGGGTTGCGAGGTGATTGTT+CGG - chr8.1:49756414-49756433 None:intergenic 55.0%
GGACTTATTGCGCTTGTGGC+CGG + chr8.1:49755077-49755096 MS.gene070614:CDS 55.0%
GGCAATCATAGCCTCCGTGT+TGG - chr8.1:49753806-49753825 None:intergenic 55.0%
GGGAACCGACTGTTCTTTGC+AGG + chr8.1:49755884-49755903 MS.gene070614:CDS 55.0%
TTCTCAGTTGCCTGAGGCGA+CGG + chr8.1:49754092-49754111 MS.gene070614:CDS 55.0%
TTGCAGGTGAGGCCACTTGT+AGG + chr8.1:49755900-49755919 MS.gene070614:CDS 55.0%
TTGCGGCCCTAGATCTTGGT+GGG + chr8.1:49754265-49754284 MS.gene070614:CDS 55.0%
TTGGAAGGTAGGAACCGTCC+TGG + chr8.1:49754201-49754220 MS.gene070614:CDS 55.0%
TTTGCGGCCCTAGATCTTGG+TGG + chr8.1:49754264-49754283 MS.gene070614:CDS 55.0%
! GCGAGGCAGCTTTTGTCGTT+TGG + chr8.1:49754162-49754181 MS.gene070614:CDS 55.0%
! TCCAAGAGGCACGGTGCATA+AGG - chr8.1:49754835-49754854 None:intergenic 55.0%
!! AGCATTGCTGGCTCCCGAAA+AGG + chr8.1:49756379-49756398 MS.gene070614:CDS 55.0%
!! TTATTGGGGCTGGCCTTGCT+GGG + chr8.1:49754130-49754149 MS.gene070614:CDS 55.0%
!! TTGCTGGCTCCCGAAAAGGA+AGG + chr8.1:49756383-49756402 MS.gene070614:CDS 55.0%
AAGGGGATCGCTTCCCCATC+TGG - chr8.1:49755792-49755811 None:intergenic 60.0%
AGTTGCCTGAGGCGACGGAA+GGG + chr8.1:49754097-49754116 MS.gene070614:CDS 60.0%
ATTCAAGCCGAACGGGGAGC+CGG + chr8.1:49754380-49754399 MS.gene070614:CDS 60.0%
CTGCGCCACCAGAAACAGTG+TGG - chr8.1:49755058-49755077 None:intergenic 60.0%
CTGGCTCCCGAAAAGGAAGG+AGG + chr8.1:49756386-49756405 MS.gene070614:CDS 60.0%
GAAGGTAGGAACCGTCCTGG+CGG + chr8.1:49754204-49754223 MS.gene070614:CDS 60.0%
GGAGGGGGAATGTTAGGAGG+TGG + chr8.1:49753950-49753969 MS.gene070614:CDS 60.0%
! TTATCGACCGGCTCCCCGTT+CGG - chr8.1:49754390-49754409 None:intergenic 60.0%
!! CACACTGTTTCTGGTGGCGC+AGG + chr8.1:49755056-49755075 MS.gene070614:CDS 60.0%
!! GTTATTGGGGCTGGCCTTGC+TGG + chr8.1:49754129-49754148 MS.gene070614:CDS 60.0%
CAGTTGCCTGAGGCGACGGA+AGG + chr8.1:49754096-49754115 MS.gene070614:CDS 65.0%
CTTTGGGTCACCGGGTTGCG+AGG - chr8.1:49756425-49756444 None:intergenic 65.0%
GAACGGGGAGCCGGTCGATA+AGG + chr8.1:49754389-49754408 MS.gene070614:CDS 65.0%
TCGCTGCAGCCAACCCAGCA+AGG - chr8.1:49754146-49754165 None:intergenic 65.0%
!! TTGCTGGGTTGGCTGCAGCG+AGG + chr8.1:49754145-49754164 MS.gene070614:CDS 65.0%
ACCGTCCCTTCCGTCGCCTC+AGG - chr8.1:49754105-49754124 None:intergenic 70.0%
GCCTGAGGCGACGGAAGGGA+CGG + chr8.1:49754101-49754120 MS.gene070614:CDS 70.0%
!! TGGGGCTGGCCTTGCTGGGT+TGG + chr8.1:49754134-49754153 MS.gene070614:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 49753634 49756450 49753634 ID=MS.gene070614
chr8.1 mRNA 49753634 49756450 49753634 ID=MS.gene070614.t1;Parent=MS.gene070614
chr8.1 exon 49753634 49755170 49753634 ID=MS.gene070614.t1.exon1;Parent=MS.gene070614.t1
chr8.1 CDS 49753634 49755170 49753634 ID=cds.MS.gene070614.t1;Parent=MS.gene070614.t1
chr8.1 exon 49755735 49756450 49755735 ID=MS.gene070614.t1.exon2;Parent=MS.gene070614.t1
chr8.1 CDS 49755735 49756450 49755735 ID=cds.MS.gene070614.t1;Parent=MS.gene070614.t1
Gene Sequence

>MS.gene070614

ATGGCAACTCCTTCTTCTTCAGATGGATCTGTTTCAAGGCGTATGTCGTTGAGAAAGAAAGTGAATTATCGTAGTTACGACGAGGGTTTGATAGATGATGACCTTTTTGATAAGAGTTTGGATAGTGGTTTGAAGAAGAAGAGTAAGAGTAAAGATATTCAGAAAGAAACCAACACGGAGGCTATGATTGCCTTTTCACTTGGTTTCCCAATGAATGCTTTGCTTGAGCATGAGATTAGATCTGGGGTTGTCTCAGAATTAGGCGGGAAAGAGCAGAATGATTATGTTGTTGTTAGGAATCATATATTGGCTCTTTGGAGGGGGAATGTTAGGAGGTGGTTGACGAAGGGACAAATTAGGGAAACTGTGACCAAGGAGTTTGAACATTTGATTAATTCTGCTTATGACTATCTTTTGTATAATGGTCACATCAATTTTGGGGTTTTACCGTCGTTTACTTCTCAGTTGCCTGAGGCGACGGAAGGGACGGTTATTGTTATTGGGGCTGGCCTTGCTGGGTTGGCTGCAGCGAGGCAGCTTTTGTCGTTTGGTTATAAGGTTGTTGTTTTGGAAGGTAGGAACCGTCCTGGCGGCAGAGTTTATACTCAGAAGGTAGGGAATGAGGATAAGTTTGCGGCCCTAGATCTTGGTGGGAGCGTAATTACTGGAATTCATGCTAACCCTTTAGCGGTTTTGGCACGACAGCTTTCGATTCCGCTTCATAAAGTCCGAGACAATTGCCCTTTATTCAAGCCGAACGGGGAGCCGGTCGATAAGGAAATAGATTCAAAGGTTGAGATTGTATTCAATAAGTTGCTTGATAAAGTTATGGAACTCAGGAAAATTATGGGTGGGTTTGCAAGTGATACCTCACTTGGTTCAGTCTTGGAGACACTCAAGAATTTATATGCGGTGGCTCAAACTACTGATGAGAAGCAGATGTTTGATTGGCATCTTGCAAATTTAGAATATGCAAATGCTGGATGTCTTTCAAATCTTTCAGCTGCCTATTGGGATCAGGATGATCCTTATGAAATGGGTGGTGATCATTGTTTTCTTGCTGGAGGAAATTGGAGATTGATAAAAGCTATGTGTGAAGGAGTTCCTATTTTTTATGAAAAGACCGTCAACACTATCAGATATGGAAATGAGGGTGTTGAGATTATTGCTGGGGATCAAGTCTTTCAAGCAGACATCACCTTATGCACCGTGCCTCTTGGAGTTCTGAAAAAGAAGGCCATTAATTTTGAACCTGAATTACCTGCAAGAAAACTCGAATCAATTGAGAGGATGGGTTTTGGGCTTCTGAACAAAATTGCAATGGTTTTTCCACATGTGTTTTGGGGGGAAGATCTGGACACATTTGGATGTCTCAACGAAAATAGTCATGATCGTGGGGAGTTCTTTTTATTTTACGGTTACCACACTGTTTCTGGTGGCGCAGGACTTATTGCGCTTGTGGCCGGTGAAGCTGCACAAGCCTTTGAAACCACAGATCCAATCGTCTTACTTCATCGGGTTTTGAACACTCTAAAAGGTACCTCTCTCTTATTGTGGTTGTTCATTAAATTATATGGGTGTTTCCTTTTGCACATTTTCCTTCCCCCCCTGTTTTAGGTGTTATTTGATAGGGTTGCATGATTTGCTATTTTATTGTACGATTTGATTTGATTTGGCTTCTTAGCTGCTTGTATAATGTGTGAATGAATCTCGTATTGCTCTGAAATACAATACATGCAATTGCAAAATTCCATATCATCAATATGAATCACATGATTTTAATTTATTTGGCTATATAATTCCTCTCCATTCACTTGCTTACCATGTGAAACTTATTTGGCGATATCGTTCATCTTTCTGCACTTTGACTTATGATGCATGGCTTTTTATTTTATTTTTTTCTGAGGCTTATGGTGTACTTTTCCCCCCTCAATTTCTAGCTCACAATTATTGAATTGAACAGCCATTAAATATTTTTTTATTGAATTGAACATTATTATCTCAAGCTATTATGTTATTATTCTTAACTTATGAATTTATTTGATTCACTGTTAAAAAAAAAAATGTGGTTCTAATTTTCAATTTATATATTTTTCTACAGGTATTTTTCAACCTAAAGGTATCACTGTGCCTGATCCAATACAATCAATTTGTACCAGATGGGGAAGCGATCCCCTTTCTTATGGTTCATACTCTCATGTTAGTGTGCAATCATCTGGTAAAGATTATGATATACTTGCAGAAAACGTGGGGAACCGACTGTTCTTTGCAGGTGAGGCCACTTGTAGGCAATATCCAGCCACTATGCATGGTGCTTTCATGAGTGGCTTGAGAGAAGCTTCACGCATTTACCAGTTAACCCGTGATCAGCAACCTTGTCCTAAGAAGTCCCTGTCCAAGAATATAGGACCCAACAACGGTATCTTGGTTAATTTATTCAAGAGGCCTGATTTGGAATCTGGGAATTTCGCTTTCATATATGATCCTTTCTCAGAAGATCCGCAGTCGAAAGCGATTCTGCAAATGACATTTGGTGGTACCGAAGAAAGTTACAAGGAGATATTAAACTGCTATCCCAATACCACAAAGTTGCAGCTTTACACTATTTTATCCCGTGAACAGGTTGATCAAGTGCAGCAAATTACTGAAGGAGATGAAAATAGGTTGTCATATTTGACAAAAAACCTAGGTTTGAAGCTAATGGGATTAAGCGCTTTACTCATTGCTGGCAATGACGTAATAGCTAGCATTGCTGGCTCCCGAAAAGGAAGGAGGAACCGAACAATCACCTCGCAACCCGGTGACCCAAAGAAGTAG

Protein sequence

>MS.gene070614.t1

MATPSSSDGSVSRRMSLRKKVNYRSYDEGLIDDDLFDKSLDSGLKKKSKSKDIQKETNTEAMIAFSLGFPMNALLEHEIRSGVVSELGGKEQNDYVVVRNHILALWRGNVRRWLTKGQIRETVTKEFEHLINSAYDYLLYNGHINFGVLPSFTSQLPEATEGTVIVIGAGLAGLAAARQLLSFGYKVVVLEGRNRPGGRVYTQKVGNEDKFAALDLGGSVITGIHANPLAVLARQLSIPLHKVRDNCPLFKPNGEPVDKEIDSKVEIVFNKLLDKVMELRKIMGGFASDTSLGSVLETLKNLYAVAQTTDEKQMFDWHLANLEYANAGCLSNLSAAYWDQDDPYEMGGDHCFLAGGNWRLIKAMCEGVPIFYEKTVNTIRYGNEGVEIIAGDQVFQADITLCTVPLGVLKKKAINFEPELPARKLESIERMGFGLLNKIAMVFPHVFWGEDLDTFGCLNENSHDRGEFFLFYGYHTVSGGAGLIALVAGEAAQAFETTDPIVLLHRVLNTLKGIFQPKGITVPDPIQSICTRWGSDPLSYGSYSHVSVQSSGKDYDILAENVGNRLFFAGEATCRQYPATMHGAFMSGLREASRIYQLTRDQQPCPKKSLSKNIGPNNGILVNLFKRPDLESGNFAFIYDPFSEDPQSKAILQMTFGGTEESYKEILNCYPNTTKLQLYTILSREQVDQVQQITEGDENRLSYLTKNLGLKLMGLSALLIAGNDVIASIAGSRKGRRNRTITSQPGDPKK