Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07064.t1 | RXH84418.1 | 59.9 | 893 | 301 | 15 | 1 | 848 | 1 | 881 | 4.00E-240 | 841.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07064.t1 | Q9S834 | 87.9 | 239 | 27 | 1 | 602 | 840 | 62 | 298 | 1.3e-117 | 425.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07064.t1 | A0A498ILI8 | 59.9 | 893 | 301 | 15 | 1 | 848 | 1 | 881 | 2.9e-240 | 841.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene64646 | MS.gene07064 | PPI |
MS.gene07064 | MS.gene67388 | PPI |
MS.gene07064 | MS.gene004115 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07064.t1 | MTR_7g109610 | 97.338 | 263 | 7 | 0 | 587 | 849 | 39 | 301 | 0.0 | 545 |
MS.gene07064.t1 | MTR_1g086940 | 86.381 | 257 | 31 | 2 | 591 | 847 | 50 | 302 | 9.05e-158 | 462 |
MS.gene07064.t1 | MTR_7g082980 | 52.404 | 208 | 82 | 3 | 623 | 827 | 57 | 250 | 5.41e-65 | 219 |
MS.gene07064.t1 | MTR_4g075100 | 48.000 | 200 | 98 | 1 | 634 | 827 | 17 | 216 | 6.96e-57 | 195 |
MS.gene07064.t1 | MTR_5g026840 | 52.096 | 167 | 80 | 0 | 661 | 827 | 93 | 259 | 1.79e-52 | 185 |
MS.gene07064.t1 | MTR_4g069800 | 48.521 | 169 | 87 | 0 | 659 | 827 | 102 | 270 | 7.99e-48 | 171 |
MS.gene07064.t1 | MTR_4g069800 | 48.466 | 163 | 84 | 0 | 665 | 827 | 76 | 238 | 6.27e-47 | 167 |
MS.gene07064.t1 | MTR_4g034690 | 40.828 | 169 | 99 | 1 | 659 | 826 | 25 | 193 | 1.40e-39 | 145 |
MS.gene07064.t1 | MTR_4g102000 | 37.113 | 194 | 117 | 1 | 634 | 827 | 113 | 301 | 1.92e-36 | 140 |
MS.gene07064.t1 | MTR_0002s0730 | 38.323 | 167 | 102 | 1 | 661 | 826 | 27 | 193 | 7.15e-35 | 132 |
MS.gene07064.t1 | MTR_4g069800 | 50.413 | 121 | 60 | 0 | 659 | 779 | 102 | 222 | 1.93e-33 | 129 |
MS.gene07064.t1 | MTR_4g099360 | 38.542 | 192 | 103 | 2 | 646 | 829 | 101 | 285 | 6.20e-28 | 115 |
MS.gene07064.t1 | MTR_7g112640 | 33.333 | 174 | 105 | 3 | 665 | 827 | 119 | 292 | 1.34e-25 | 108 |
MS.gene07064.t1 | MTR_1g106550 | 34.066 | 182 | 104 | 4 | 659 | 827 | 158 | 336 | 5.58e-20 | 93.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07064.t1 | AT1G02560 | 87.866 | 239 | 27 | 1 | 602 | 840 | 62 | 298 | 6.06e-153 | 450 |
MS.gene07064.t1 | AT2G47350 | 44.133 | 571 | 217 | 20 | 1 | 559 | 1 | 481 | 2.01e-110 | 347 |
MS.gene07064.t1 | AT1G56460 | 41.248 | 577 | 245 | 17 | 1 | 558 | 1 | 502 | 3.49e-86 | 284 |
MS.gene07064.t1 | AT1G56460 | 39.138 | 603 | 251 | 16 | 1 | 558 | 1 | 532 | 6.91e-82 | 273 |
MS.gene07064.t1 | AT3G06660 | 43.421 | 456 | 188 | 15 | 109 | 559 | 29 | 419 | 4.12e-63 | 219 |
MS.gene07064.t1 | AT1G56460 | 36.532 | 594 | 281 | 18 | 1 | 575 | 1 | 517 | 1.09e-60 | 215 |
MS.gene07064.t1 | AT1G66670 | 51.309 | 191 | 93 | 0 | 637 | 827 | 66 | 256 | 6.08e-60 | 206 |
MS.gene07064.t1 | AT5G45390 | 53.216 | 171 | 80 | 0 | 657 | 827 | 80 | 250 | 4.15e-56 | 195 |
MS.gene07064.t1 | AT5G23140 | 49.432 | 176 | 89 | 0 | 652 | 827 | 44 | 219 | 1.74e-54 | 189 |
MS.gene07064.t1 | AT2G47350 | 38.344 | 459 | 182 | 19 | 1 | 447 | 1 | 370 | 5.51e-53 | 189 |
MS.gene07064.t1 | AT1G11750 | 42.714 | 199 | 109 | 1 | 634 | 827 | 69 | 267 | 1.56e-45 | 165 |
MS.gene07064.t1 | AT1G11750 | 46.746 | 169 | 90 | 0 | 659 | 827 | 117 | 285 | 6.78e-45 | 164 |
MS.gene07064.t1 | ATCG00670 | 37.824 | 193 | 114 | 2 | 635 | 826 | 6 | 193 | 4.84e-42 | 152 |
MS.gene07064.t1 | AT1G12410 | 38.764 | 178 | 109 | 0 | 653 | 830 | 86 | 263 | 1.48e-37 | 142 |
MS.gene07064.t1 | AT4G17040 | 39.062 | 192 | 102 | 2 | 646 | 829 | 102 | 286 | 2.37e-34 | 134 |
MS.gene07064.t1 | AT1G09130 | 36.667 | 180 | 103 | 2 | 659 | 827 | 124 | 303 | 7.08e-31 | 124 |
MS.gene07064.t1 | AT1G09130 | 36.667 | 180 | 103 | 2 | 659 | 827 | 124 | 303 | 7.08e-31 | 124 |
MS.gene07064.t1 | AT1G09130 | 36.667 | 180 | 103 | 2 | 659 | 827 | 124 | 303 | 1.42e-30 | 124 |
MS.gene07064.t1 | AT1G49970 | 33.708 | 178 | 108 | 2 | 659 | 826 | 174 | 351 | 5.26e-22 | 99.8 |
Find 222 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGCTAGATGTGTTCTTTA+TGG | 0.102442 | 7.2:+5805851 | None:intergenic |
TACTTTGATTTGCAGGAAAT+TGG | 0.149092 | 7.2:-5801549 | MS.gene07064:intron |
TGAATCATTATCCTCGAATT+TGG | 0.187153 | 7.2:+5799691 | None:intergenic |
TTCGAAAAGCTCTCGTTTAT+CGG | 0.231676 | 7.2:-5806587 | MS.gene07064:CDS |
AGAATTTAAGTCATGGAATT+TGG | 0.239916 | 7.2:-5801442 | MS.gene07064:CDS |
ACTCTCTAGCGTCTCTAATA+TGG | 0.265515 | 7.2:-5805652 | MS.gene07064:CDS |
GATTTCAAAAGGGGCGGATT+TGG | 0.281044 | 7.2:-5805909 | MS.gene07064:CDS |
GTGTTCTTGCTCCTGCTAAT+TGG | 0.295171 | 7.2:-5806828 | MS.gene07064:CDS |
TTTGAATCCCGGTATTTATA+CGG | 0.300042 | 7.2:+5804206 | None:intergenic |
GCAAACTGACATAGATATTC+AGG | 0.327655 | 7.2:-5799641 | MS.gene07064:intron |
ACAGAATTACCTGTTGCTTT+TGG | 0.329755 | 7.2:+5806548 | None:intergenic |
TCTATGATAATACAGGCTTT+AGG | 0.334370 | 7.2:-5804045 | MS.gene07064:intron |
TAAACTTTGACCAGTTTGAT+AGG | 0.339155 | 7.2:+5798586 | None:intergenic |
GAATCCTGAGAGTACAAGTT+TGG | 0.340010 | 7.2:-5806734 | MS.gene07064:CDS |
GCAAAAGAAGCCAAAGAGTA+TGG | 0.350032 | 7.2:-5798521 | MS.gene07064:CDS |
TCTGCATCTAACAGTGCTTC+AGG | 0.354010 | 7.2:-5806622 | MS.gene07064:CDS |
AAACCTGTGCCAGATCTTCT+TGG | 0.361784 | 7.2:+5804998 | None:intergenic |
ACCCATTCAAGTTAGCCTTA+TGG | 0.363359 | 7.2:+5798615 | None:intergenic |
GTCTATGAGTCCATACTCTT+TGG | 0.366650 | 7.2:+5798511 | None:intergenic |
TATGAGGATGAAGTGGAATC+AGG | 0.367393 | 7.2:-5805552 | MS.gene07064:CDS |
GCCGTGGCCTGCGCGATGGT+TGG | 0.370228 | 7.2:+5807073 | None:intergenic |
CTGCAGCCAAAGTTAATGAT+AGG | 0.377004 | 7.2:-5798445 | MS.gene07064:CDS |
TGTGCATGTACAGGGAAATA+AGG | 0.377389 | 7.2:+5801042 | None:intergenic |
CCTTCCACGGAAGGCCTTTG+AGG | 0.388383 | 7.2:+5805931 | None:intergenic |
AATCCTGAGAGTACAAGTTT+GGG | 0.390497 | 7.2:-5806733 | MS.gene07064:CDS |
CAACCGCTTGGTGGGTTTCA+AGG | 0.395625 | 7.2:-5799667 | MS.gene07064:CDS |
GGGCAGCTTCAAGATGGATT+GGG | 0.397967 | 7.2:-5806712 | MS.gene07064:CDS |
GACTCTTACAACGCGTCAAC+GGG | 0.398062 | 7.2:-5805445 | MS.gene07064:CDS |
AAAGGGGCGGATTTGGTGTC+GGG | 0.399013 | 7.2:-5805902 | MS.gene07064:CDS |
CACCATAAGGCTAACTTGAA+TGG | 0.402639 | 7.2:-5798617 | MS.gene07064:CDS |
ACTTTGATTTGCAGGAAATT+GGG | 0.404238 | 7.2:-5801548 | MS.gene07064:intron |
TCCATGACTTAAATTCTTGT+CGG | 0.405289 | 7.2:+5801448 | None:intergenic |
CGTCAACGGGCCCTTCAATC+AGG | 0.406481 | 7.2:-5805432 | MS.gene07064:CDS |
ACTTTGGCTGCAGATGCTAA+TGG | 0.409840 | 7.2:+5798455 | None:intergenic |
ATGGATTGGGGAGTGAGAAC+AGG | 0.411464 | 7.2:-5806699 | MS.gene07064:CDS |
GTCATGGAATTTGGTCCATC+AGG | 0.413558 | 7.2:-5801433 | MS.gene07064:intron |
TTAGGATCTACCCGGTTTGA+TGG | 0.419286 | 7.2:-5807126 | MS.gene07064:CDS |
TTCCGTGGAAGGATTTCAAA+AGG | 0.429035 | 7.2:-5805920 | MS.gene07064:CDS |
ACTTAAATTCTTGTCGGTCT+CGG | 0.429688 | 7.2:+5801454 | None:intergenic |
TTGTGTTACTCAACCATCTT+CGG | 0.429757 | 7.2:-5806893 | MS.gene07064:CDS |
CCTTGTCCTTGTGCATGTAC+AGG | 0.430907 | 7.2:+5801033 | None:intergenic |
AAAGAAGCGCCAAGAAGATC+TGG | 0.434910 | 7.2:-5805007 | MS.gene07064:CDS |
GGCTTGGTGTTTATAATCGC+AGG | 0.439814 | 7.2:+5804795 | None:intergenic |
ATCATCATCAACACCTCCTT+CGG | 0.442031 | 7.2:-5807004 | MS.gene07064:CDS |
TCCATCCAGTACACGTCGCT+TGG | 0.442077 | 7.2:+5805785 | None:intergenic |
CGACATTCAGGATCAGGAAT+AGG | 0.442335 | 7.2:+5807039 | None:intergenic |
AGTACCCAAGCGACGTGTAC+TGG | 0.443147 | 7.2:-5805790 | MS.gene07064:CDS |
TCAGGAATAGGCTGTGAATC+AGG | 0.447013 | 7.2:+5807051 | None:intergenic |
CTAATGGATGGAGAGCTTTG+AGG | 0.448125 | 7.2:+5798471 | None:intergenic |
AGGCATCTTTGCCTGATTGA+AGG | 0.450821 | 7.2:+5805421 | None:intergenic |
GGGTATCTGTCCTATCAAAC+TGG | 0.451266 | 7.2:-5798596 | MS.gene07064:CDS |
CCACCTCGCGAGATGTGTGC+TGG | 0.451336 | 7.2:-5804245 | MS.gene07064:CDS |
ACTCTCTTGCTCTTACGAAC+AGG | 0.456564 | 7.2:+5805810 | None:intergenic |
AAATCACGACATTCAGGATC+AGG | 0.456776 | 7.2:+5807033 | None:intergenic |
CATTGCTGATACCATCAAAC+CGG | 0.457258 | 7.2:+5807115 | None:intergenic |
GCTGTCCAGGCGAAGACTAC+TGG | 0.457917 | 7.2:-5804146 | MS.gene07064:intron |
AAATGAAATGCTGCACCATA+AGG | 0.459350 | 7.2:-5798630 | MS.gene07064:CDS |
AGATATGTGATAGGTCCTAC+TGG | 0.459612 | 7.2:-5804852 | MS.gene07064:CDS |
GTACAAATCCGTATAAATAC+CGG | 0.462269 | 7.2:-5804214 | MS.gene07064:CDS |
CTTGCTCCTGCTAATTGGAA+AGG | 0.463533 | 7.2:-5806823 | MS.gene07064:CDS |
CTAGAACCTTTCCAATTAGC+AGG | 0.466538 | 7.2:+5806817 | None:intergenic |
CGCAGGGATCCCCATTTCCT+CGG | 0.468162 | 7.2:+5804812 | None:intergenic |
GCTAGCCCTATCATTAACTT+TGG | 0.469138 | 7.2:+5798439 | None:intergenic |
TACTCACTTCTAGGTGGGGC+AGG | 0.469584 | 7.2:+5805354 | None:intergenic |
GGGGCAGCTTCAAGATGGAT+TGG | 0.471719 | 7.2:-5806713 | MS.gene07064:CDS |
TGGAAACGCTCCTGCACCAT+TGG | 0.472150 | 7.2:+5801003 | None:intergenic |
TTATAAACACCAAGCCCATC+AGG | 0.472848 | 7.2:-5804788 | MS.gene07064:intron |
GCCAACCATCGCGCAGGCCA+CGG | 0.474733 | 7.2:-5807074 | MS.gene07064:CDS |
GATGAAGAACATACCTTGCT+AGG | 0.476147 | 7.2:+5800773 | None:intergenic |
TAATGGATGGAGAGCTTTGA+GGG | 0.476690 | 7.2:+5798472 | None:intergenic |
GAAGTGGAATCAGGGTCTGC+TGG | 0.477090 | 7.2:-5805543 | MS.gene07064:CDS |
GGAATCTGTTGATGTATTGA+TGG | 0.477592 | 7.2:-5805484 | MS.gene07064:CDS |
CCATCCAGTACACGTCGCTT+GGG | 0.482402 | 7.2:+5805786 | None:intergenic |
GAGTGAGAACAGGGTTAAGA+AGG | 0.483255 | 7.2:-5806689 | MS.gene07064:CDS |
ACCATAAGGCTAACTTGAAT+GGG | 0.485952 | 7.2:-5798616 | MS.gene07064:CDS |
CAGACCGCGCCAAAAGCAAC+AGG | 0.489681 | 7.2:-5806557 | MS.gene07064:intron |
CCTGGACAGCATTGTAGCAT+TGG | 0.490682 | 7.2:+5804159 | None:intergenic |
CGCTCCTGCACCATTGGTGG+TGG | 0.490771 | 7.2:+5801009 | None:intergenic |
AAAAGGGGCGGATTTGGTGT+CGG | 0.491074 | 7.2:-5805903 | MS.gene07064:CDS |
GGCATCTTTGCCTGATTGAA+GGG | 0.492951 | 7.2:+5805422 | None:intergenic |
TCTAACAGTGCTTCAGGAAG+CGG | 0.493879 | 7.2:-5806616 | MS.gene07064:CDS |
TGACTCTTACAACGCGTCAA+CGG | 0.495079 | 7.2:-5805446 | MS.gene07064:CDS |
GCAATGCTGTGAGGAGGAAG+AGG | 0.500162 | 7.2:-5807098 | MS.gene07064:CDS |
CGCTTGGTGGGTTTCAAGGA+GGG | 0.502226 | 7.2:-5799663 | MS.gene07064:CDS |
AGGACCGGTTGATGATGATA+TGG | 0.508296 | 7.2:-5800840 | MS.gene07064:CDS |
TCATCAAGGTCAGGCAAAGA+TGG | 0.509231 | 7.2:-5805618 | MS.gene07064:CDS |
AAACGCTCCTGCACCATTGG+TGG | 0.509404 | 7.2:+5801006 | None:intergenic |
GTCATGTATGTAAATTCTCC+AGG | 0.509867 | 7.2:-5800517 | MS.gene07064:CDS |
GCTTGAAGATACAGATTATG+AGG | 0.510025 | 7.2:-5805568 | MS.gene07064:CDS |
TTATACGGATTTGTACATGA+TGG | 0.510873 | 7.2:+5804221 | None:intergenic |
GACAGCAGCTCCTCTTCTGT+AGG | 0.513010 | 7.2:+5805254 | None:intergenic |
AATGATGGTTATGATAATAC+TGG | 0.513052 | 7.2:-5806946 | MS.gene07064:CDS |
AGCTTGATACCTGATGGGCT+TGG | 0.515448 | 7.2:+5804779 | None:intergenic |
GATGTGTCCACTGTTTGTGT+TGG | 0.516311 | 7.2:-5800310 | MS.gene07064:CDS |
ATGTATTGATGGACACTAAG+AGG | 0.516625 | 7.2:-5805473 | MS.gene07064:CDS |
TGCCCCAAACTTGTACTCTC+AGG | 0.517224 | 7.2:+5806730 | None:intergenic |
CCTCAAAGGCCTTCCGTGGA+AGG | 0.517260 | 7.2:-5805931 | MS.gene07064:CDS |
GAGACTGCAAAGAGGAACCT+TGG | 0.517832 | 7.2:+5804181 | None:intergenic |
CCAATGCTACAATGCTGTCC+AGG | 0.518125 | 7.2:-5804159 | MS.gene07064:CDS |
TTATCAGCAGCTTCCTCCGA+AGG | 0.522047 | 7.2:+5806988 | None:intergenic |
TTTACGCCTAATGGCAGCCT+CGG | 0.523022 | 7.2:+5805223 | None:intergenic |
ACACAAACAGTGGACACATC+AGG | 0.523363 | 7.2:+5800313 | None:intergenic |
CTCCGTCCACTAGCCGAAGA+TGG | 0.525607 | 7.2:+5806880 | None:intergenic |
AATAGTACGTTGTGGAGGAC+CGG | 0.526160 | 7.2:-5800855 | MS.gene07064:CDS |
ATGATTCATCAACCGCTTGG+TGG | 0.526363 | 7.2:-5799676 | MS.gene07064:CDS |
TTTCACCAGTAGTCTTCGCC+TGG | 0.526878 | 7.2:+5804141 | None:intergenic |
AATACCATCAGATATGTGAT+AGG | 0.526976 | 7.2:-5804861 | MS.gene07064:CDS |
GCAAGTTGAGAAGGCTGCTA+GGG | 0.527308 | 7.2:-5805198 | MS.gene07064:CDS |
GCGTAAAATGCAAGTTGAGA+AGG | 0.527598 | 7.2:-5805207 | MS.gene07064:CDS |
AGTTTGGGGCAGCTTCAAGA+TGG | 0.531243 | 7.2:-5806718 | MS.gene07064:CDS |
TCCGTGGAAGGATTTCAAAA+GGG | 0.531352 | 7.2:-5805919 | MS.gene07064:CDS |
GCTAAGAAGCGAGGCCTCAA+AGG | 0.533528 | 7.2:-5805945 | MS.gene07064:CDS |
CTGCTAAGCGCTGGGACCAA+AGG | 0.535143 | 7.2:-5799885 | MS.gene07064:intron |
GATACAGCTTGCCAAATTCG+AGG | 0.535874 | 7.2:-5799702 | MS.gene07064:CDS |
AATGCTGCCTCATCAAGGTC+AGG | 0.537706 | 7.2:-5805627 | MS.gene07064:CDS |
CAATATACTCACTTCTAGGT+GGG | 0.538644 | 7.2:+5805349 | None:intergenic |
AGGCCTCGCTTCTTAGCAGA+CGG | 0.539987 | 7.2:+5805951 | None:intergenic |
AAAAGAGAAGCCTACAGAAG+AGG | 0.541543 | 7.2:-5805264 | MS.gene07064:CDS |
GCAGGGATCCCCATTTCCTC+GGG | 0.542465 | 7.2:+5804813 | None:intergenic |
CTTGTCCTTGTGCATGTACA+GGG | 0.544692 | 7.2:+5801034 | None:intergenic |
GCACACATCTCGCGAGGTGG+AGG | 0.545738 | 7.2:+5804248 | None:intergenic |
TACAGATTATGAGGATGAAG+TGG | 0.546851 | 7.2:-5805559 | MS.gene07064:CDS |
TGGATTGGGGAGTGAGAACA+GGG | 0.547165 | 7.2:-5806698 | MS.gene07064:CDS |
TGATTCATCAACCGCTTGGT+GGG | 0.547954 | 7.2:-5799675 | MS.gene07064:CDS |
TACTTGGTCAAGATTCTAGC+AGG | 0.548008 | 7.2:-5805050 | MS.gene07064:CDS |
AAAATCTGATTTGAAGGCGA+AGG | 0.548725 | 7.2:-5801504 | MS.gene07064:CDS |
CCAGCTGTAACTGATCCTCC+TGG | 0.549054 | 7.2:+5800499 | None:intergenic |
GGGGCAGGAGGTAATCCATT+GGG | 0.549140 | 7.2:+5805369 | None:intergenic |
TTGGCCATATCATCATCAAC+CGG | 0.549859 | 7.2:+5800836 | None:intergenic |
TGGCGATATTTGATACTATG+AGG | 0.550197 | 7.2:-5800345 | MS.gene07064:CDS |
AATAATAGACGGAGCAGTGA+AGG | 0.554175 | 7.2:-5806850 | MS.gene07064:CDS |
CCAGGAGGATCAGTTACAGC+TGG | 0.558166 | 7.2:-5800499 | MS.gene07064:intron |
AAGAAGGTTAAACTCAAGGT+TGG | 0.559367 | 7.2:-5806673 | MS.gene07064:CDS |
AGGACCACCACCAATGGTGC+AGG | 0.560104 | 7.2:-5801013 | MS.gene07064:CDS |
GGGAAGGAAGAGACGTCGAT+GGG | 0.560352 | 7.2:-5805882 | MS.gene07064:CDS |
TGCAAGTTGAGAAGGCTGCT+AGG | 0.561618 | 7.2:-5805199 | MS.gene07064:CDS |
TGCAGCCAAAGTTAATGATA+GGG | 0.564539 | 7.2:-5798444 | MS.gene07064:CDS |
GGTTAAGAAGGTTAAACTCA+AGG | 0.564843 | 7.2:-5806677 | MS.gene07064:CDS |
AGTTTAATCGAGTTTCCCAA+TGG | 0.564889 | 7.2:-5805384 | MS.gene07064:CDS |
AAGGTTAAACTCAAGGTTGG+TGG | 0.565439 | 7.2:-5806670 | MS.gene07064:CDS |
ATGCTGATATATTTGGTGGA+AGG | 0.565650 | 7.2:-5806756 | MS.gene07064:CDS |
AGAGGAGCCAACCATCGCGC+AGG | 0.566100 | 7.2:-5807080 | MS.gene07064:CDS |
AAGCTGAGAAACTATGATGT+TGG | 0.567660 | 7.2:+5800817 | None:intergenic |
GGGCGGATTTGGTGTCGGGA+AGG | 0.568133 | 7.2:-5805898 | MS.gene07064:CDS |
AAGAACACATCTAGCAAGCA+AGG | 0.568724 | 7.2:-5805846 | MS.gene07064:CDS |
GTTTCTAGTGATGAGAATGA+TGG | 0.569956 | 7.2:-5806961 | MS.gene07064:CDS |
ATCTTTGCCTGACCTTGATG+AGG | 0.571415 | 7.2:+5805620 | None:intergenic |
ATGAGGATGAAGTGGAATCA+GGG | 0.574164 | 7.2:-5805551 | MS.gene07064:CDS |
AGAAAACCGAGGCTGCCATT+AGG | 0.578455 | 7.2:-5805229 | MS.gene07064:CDS |
ACTCAACCATCTTCGGCTAG+TGG | 0.578820 | 7.2:-5806886 | MS.gene07064:CDS |
AGGATAGCTTGATACCTGAT+GGG | 0.578873 | 7.2:+5804774 | None:intergenic |
TGGACAATGCTGCCTCATCA+AGG | 0.579403 | 7.2:-5805632 | MS.gene07064:CDS |
CCCAAGCGACGTGTACTGGA+TGG | 0.579720 | 7.2:-5805786 | MS.gene07064:CDS |
GCTTCTTTACCTTGATGCCG+TGG | 0.580342 | 7.2:-5800798 | MS.gene07064:CDS |
GGCAGCTTCAAGATGGATTG+GGG | 0.581310 | 7.2:-5806711 | MS.gene07064:CDS |
CCGTGGAAGGATTTCAAAAG+GGG | 0.581364 | 7.2:-5805918 | MS.gene07064:CDS |
AAAAGCTCTCGTTTATCGGA+CGG | 0.583457 | 7.2:-5806583 | MS.gene07064:CDS |
CGGGAAGGAAGAGACGTCGA+TGG | 0.584552 | 7.2:-5805883 | MS.gene07064:CDS |
ATAGGCTGTGAATCAGGCCG+TGG | 0.585794 | 7.2:+5807057 | None:intergenic |
TTTGTGTTGGATTAGCAGCA+AGG | 0.587673 | 7.2:-5800297 | MS.gene07064:intron |
ATGATGCTGATGATGAGATT+CGG | 0.588715 | 7.2:-5805752 | MS.gene07064:CDS |
AGGACCTATCACATATCTGA+TGG | 0.590688 | 7.2:+5804857 | None:intergenic |
GAGATGAAGAAGAATCAAGC+AGG | 0.591792 | 7.2:-5805686 | MS.gene07064:CDS |
AGGGTCTGCTGGAGAGCAAG+AGG | 0.591977 | 7.2:-5805532 | MS.gene07064:CDS |
TCAGGCCGTGGCCTGCGCGA+TGG | 0.593205 | 7.2:+5807069 | None:intergenic |
AACCATCTTCGGCTAGTGGA+CGG | 0.593376 | 7.2:-5806882 | MS.gene07064:CDS |
TGCTAGGATCCACGGCATCA+AGG | 0.594262 | 7.2:+5800789 | None:intergenic |
CCTGTACATGCACAAGGACA+AGG | 0.594438 | 7.2:-5801033 | MS.gene07064:CDS |
AAAGCTGACTAATAACACTC+TGG | 0.595346 | 7.2:+5800983 | None:intergenic |
ATAATGATTCATCAACCGCT+TGG | 0.597203 | 7.2:-5799679 | MS.gene07064:CDS |
ACCGACAAGAATTTAAGTCA+TGG | 0.599044 | 7.2:-5801449 | MS.gene07064:CDS |
ACATACCTTGCTAGGATCCA+CGG | 0.599152 | 7.2:+5800781 | None:intergenic |
TGGGGCAGGAGGTAATCCAT+TGG | 0.599381 | 7.2:+5805368 | None:intergenic |
GCGTTGAGCGTTTCATAGAG+AGG | 0.601803 | 7.2:-5804009 | MS.gene07064:CDS |
AGGACAAGGACCACCACCAA+TGG | 0.602548 | 7.2:-5801019 | MS.gene07064:CDS |
TGGAAGGATTTCAAAAGGGG+CGG | 0.606104 | 7.2:-5805915 | MS.gene07064:CDS |
TGTATTGATGGACACTAAGA+GGG | 0.606879 | 7.2:-5805472 | MS.gene07064:CDS |
CCGCTTGGTGGGTTTCAAGG+AGG | 0.611234 | 7.2:-5799664 | MS.gene07064:CDS |
ACAGGGAAATAAGGAGAAGA+CGG | 0.611242 | 7.2:+5801051 | None:intergenic |
GCGCCAAGAAGATCTGGCAC+AGG | 0.611439 | 7.2:-5805001 | MS.gene07064:intron |
CAGGGAAATAAGGAGAAGAC+GGG | 0.611607 | 7.2:+5801052 | None:intergenic |
GAAGGCTGCTAGGGAATCTG+AGG | 0.612819 | 7.2:-5805189 | MS.gene07064:intron |
TCAGCAGCTTCCTCCGAAGG+AGG | 0.613860 | 7.2:+5806991 | None:intergenic |
TACAAATCCGTATAAATACC+GGG | 0.613891 | 7.2:-5804213 | MS.gene07064:CDS |
ATCATCAACACCTCCTTCGG+AGG | 0.618324 | 7.2:-5807001 | MS.gene07064:CDS |
GGAGTAGTTTAAATAATAGA+CGG | 0.619459 | 7.2:-5806861 | MS.gene07064:CDS |
CCAGCACACATCTCGCGAGG+TGG | 0.621517 | 7.2:+5804245 | None:intergenic |
TGGAAGATTTAGGATCTACC+CGG | 0.621580 | 7.2:-5807134 | MS.gene07064:CDS |
GAGGCCTCAAAGGCCTTCCG+TGG | 0.622312 | 7.2:-5805935 | MS.gene07064:CDS |
AATATACTCACTTCTAGGTG+GGG | 0.622996 | 7.2:+5805350 | None:intergenic |
GAAGGAGGTGTTGATGATGA+TGG | 0.623293 | 7.2:+5807006 | None:intergenic |
TGATGCCGTGGATCCTAGCA+AGG | 0.623928 | 7.2:-5800786 | MS.gene07064:intron |
GCTTGGTGTTTATAATCGCA+GGG | 0.625642 | 7.2:+5804796 | None:intergenic |
ACAATATACTCACTTCTAGG+TGG | 0.626612 | 7.2:+5805348 | None:intergenic |
TAAACTCGCATTAGATGCAG+AGG | 0.627165 | 7.2:+5805401 | None:intergenic |
TTGATTTGCAGGAAATTGGG+AGG | 0.628312 | 7.2:-5801545 | MS.gene07064:intron |
TTCATAGAGAGGTCATATTG+CGG | 0.629711 | 7.2:-5803998 | MS.gene07064:CDS |
TAAATTCTTGTCGGTCTCGG+AGG | 0.636459 | 7.2:+5801457 | None:intergenic |
GATATGTGATAGGTCCTACT+GGG | 0.638043 | 7.2:-5804851 | MS.gene07064:CDS |
TCACTTCTAGGTGGGGCAGG+AGG | 0.639183 | 7.2:+5805357 | None:intergenic |
AAAGAGTATGGACTCATAGA+CGG | 0.645145 | 7.2:-5798509 | MS.gene07064:CDS |
TGGCTGCAGATGCTAATGGA+TGG | 0.646988 | 7.2:+5798459 | None:intergenic |
GATAGGTCCTACTGGGACAG+TGG | 0.650564 | 7.2:-5804844 | MS.gene07064:CDS |
TATTTCCCTGTACATGCACA+AGG | 0.650585 | 7.2:-5801039 | MS.gene07064:CDS |
TCTCCGTCTGCTAAGAAGCG+AGG | 0.650811 | 7.2:-5805954 | MS.gene07064:CDS |
AATGGATGGAGAGCTTTGAG+GGG | 0.655003 | 7.2:+5798473 | None:intergenic |
ACTTAGAGAATAGTACGTTG+TGG | 0.655340 | 7.2:-5800863 | MS.gene07064:intron |
CCTCCTTGAAACCCACCAAG+CGG | 0.659972 | 7.2:+5799664 | None:intergenic |
AAAGTCACCACTGTCCCAGT+AGG | 0.661585 | 7.2:+5804837 | None:intergenic |
AAGTTTAGAGAAGATCAACC+AGG | 0.666672 | 7.2:-5798570 | MS.gene07064:CDS |
ATTGCTGATACCATCAAACC+GGG | 0.666876 | 7.2:+5807116 | None:intergenic |
GTATCAGCAATGCTGTGAGG+AGG | 0.670655 | 7.2:-5807104 | MS.gene07064:CDS |
TGCTAATCCAACACAAACAG+TGG | 0.674559 | 7.2:+5800303 | None:intergenic |
GGAAGGAAGAGACGTCGATG+GGG | 0.684156 | 7.2:-5805881 | MS.gene07064:CDS |
TAGAGAATAGTACGTTGTGG+AGG | 0.688408 | 7.2:-5800860 | MS.gene07064:CDS |
ATCCTGAGAGTACAAGTTTG+GGG | 0.689240 | 7.2:-5806732 | MS.gene07064:CDS |
GGACCAGCACACATCTCGCG+AGG | 0.696729 | 7.2:+5804242 | None:intergenic |
TAGCATTGGAGACTGCAAAG+AGG | 0.707018 | 7.2:+5804173 | None:intergenic |
AAGATGGTTGAGTAACACAA+TGG | 0.709439 | 7.2:+5806896 | None:intergenic |
ATGTATGTAAATTCTCCAGG+AGG | 0.712038 | 7.2:-5800514 | MS.gene07064:CDS |
GCTGCTGTCAAAGAAAACCG+AGG | 0.714689 | 7.2:-5805240 | MS.gene07064:CDS |
ATGGTATCAGCAATGCTGTG+AGG | 0.773928 | 7.2:-5807107 | MS.gene07064:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 5798433 | 5807157 | 5798433 | ID=MS.gene07064 |
chr7.2 | mRNA | 5798433 | 5807157 | 5798433 | ID=MS.gene07064.t1;Parent=MS.gene07064 |
chr7.2 | exon | 5806558 | 5807157 | 5806558 | ID=MS.gene07064.t1.exon1;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5806558 | 5807157 | 5806558 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5805361 | 5805997 | 5805361 | ID=MS.gene07064.t1.exon2;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5805361 | 5805997 | 5805361 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5805190 | 5805290 | 5805190 | ID=MS.gene07064.t1.exon3;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5805190 | 5805290 | 5805190 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5805002 | 5805091 | 5805002 | ID=MS.gene07064.t1.exon4;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5805002 | 5805091 | 5805002 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5804789 | 5804916 | 5804789 | ID=MS.gene07064.t1.exon5;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5804789 | 5804916 | 5804789 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5804147 | 5804274 | 5804147 | ID=MS.gene07064.t1.exon6;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5804147 | 5804274 | 5804147 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5803983 | 5804052 | 5803983 | ID=MS.gene07064.t1.exon7;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5803983 | 5804052 | 5803983 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5801434 | 5801556 | 5801434 | ID=MS.gene07064.t1.exon8;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5801434 | 5801556 | 5801434 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5800975 | 5801089 | 5800975 | ID=MS.gene07064.t1.exon9;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5800975 | 5801089 | 5800975 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5800787 | 5800879 | 5800787 | ID=MS.gene07064.t1.exon10;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5800787 | 5800879 | 5800787 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5800500 | 5800545 | 5800500 | ID=MS.gene07064.t1.exon11;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5800500 | 5800545 | 5800500 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5800298 | 5800370 | 5800298 | ID=MS.gene07064.t1.exon12;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5800298 | 5800370 | 5800298 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5799886 | 5799920 | 5799886 | ID=MS.gene07064.t1.exon13;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5799886 | 5799920 | 5799886 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5799642 | 5799730 | 5799642 | ID=MS.gene07064.t1.exon14;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5799642 | 5799730 | 5799642 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
chr7.2 | exon | 5798433 | 5798654 | 5798433 | ID=MS.gene07064.t1.exon15;Parent=MS.gene07064.t1 |
chr7.2 | CDS | 5798433 | 5798654 | 5798433 | ID=cds.MS.gene07064.t1;Parent=MS.gene07064.t1 |
Gene Sequence |
Protein sequence |