Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67388.t1 | RHN60871.1 | 95 | 819 | 41 | 0 | 1 | 819 | 1 | 819 | 0.00E+00 | 1403.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67388.t1 | Q9LX73 | 61.6 | 818 | 296 | 2 | 1 | 818 | 1 | 800 | 7.9e-258 | 891.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67388.t1 | A0A396I7Z3 | 95.0 | 819 | 41 | 0 | 1 | 819 | 1 | 819 | 0.0e+00 | 1403.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene67388 | 0.81207 | 5.10E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene67388 | 0.829986 | 3.79E-55 | -1.69E-46 |
| MS.gene049452 | MS.gene67388 | 0.809769 | 1.61E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene67388 | 0.828576 | 8.33E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene67388 | 0.831857 | 1.32E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene67388 | 0.833669 | 4.67E-56 | -1.69E-46 |
| MS.gene050562 | MS.gene67388 | 0.826637 | 2.43E-54 | -1.69E-46 |
| MS.gene050759 | MS.gene67388 | 0.810998 | 8.72E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene67388 | 0.803244 | 3.82E-49 | -1.69E-46 |
| MS.gene051181 | MS.gene67388 | 0.803205 | 3.90E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene67388 | 0.826995 | 2.00E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene67388 | 0.832901 | 7.26E-56 | -1.69E-46 |
| MS.gene051543 | MS.gene67388 | 0.821456 | 4.00E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene67388 | 0.816903 | 4.35E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene67388 | 0.817307 | 3.53E-52 | -1.69E-46 |
| MS.gene05191 | MS.gene67388 | 0.813854 | 2.07E-51 | -1.69E-46 |
| MS.gene052037 | MS.gene67388 | 0.809504 | 1.83E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene67388 | 0.807715 | 4.41E-50 | -1.69E-46 |
| MS.gene052534 | MS.gene67388 | 0.806265 | 8.95E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene67388 | 0.818784 | 1.64E-52 | -1.69E-46 |
| MS.gene052675 | MS.gene67388 | 0.822855 | 1.89E-53 | -1.69E-46 |
| MS.gene052677 | MS.gene67388 | 0.825332 | 4.97E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene67388 | 0.814816 | 1.27E-51 | -1.69E-46 |
| MS.gene053296 | MS.gene67388 | 0.80892 | 2.44E-50 | -1.69E-46 |
| MS.gene053998 | MS.gene67388 | 0.808335 | 3.26E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene67388 | 0.813528 | 2.45E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene67388 | 0.803884 | 2.82E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene67388 | 0.807068 | 6.06E-50 | -1.69E-46 |
| MS.gene054489 | MS.gene67388 | 0.812067 | 5.11E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene67388 | 0.843777 | 1.14E-58 | -1.69E-46 |
| MS.gene055228 | MS.gene67388 | 0.802184 | 6.33E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene67388 | 0.809525 | 1.81E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene67388 | 0.813459 | 2.53E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene67388 | 0.856887 | 2.37E-62 | -1.69E-46 |
| MS.gene056252 | MS.gene67388 | 0.818076 | 2.37E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene67388 | 0.866453 | 2.82E-65 | -1.69E-46 |
| MS.gene056973 | MS.gene67388 | 0.815245 | 1.02E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene67388 | 0.83918 | 1.85E-57 | -1.69E-46 |
| MS.gene057444 | MS.gene67388 | 0.803139 | 4.02E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene67388 | 0.847758 | 9.44E-60 | -1.69E-46 |
| MS.gene057915 | MS.gene67388 | 0.806486 | 8.04E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene67388 | 0.829961 | 3.84E-55 | -1.69E-46 |
| MS.gene058081 | MS.gene67388 | 0.809997 | 1.43E-50 | -1.69E-46 |
| MS.gene058427 | MS.gene67388 | 0.810432 | 1.16E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene67388 | 0.808979 | 2.37E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene67388 | 0.804928 | 1.71E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene67388 | 0.846771 | 1.76E-59 | -1.69E-46 |
| MS.gene059272 | MS.gene67388 | 0.810168 | 1.32E-50 | -1.69E-46 |
| MS.gene059438 | MS.gene67388 | 0.814826 | 1.26E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene67388 | 0.817196 | 3.74E-52 | -1.69E-46 |
| MS.gene060167 | MS.gene67388 | 0.810211 | 1.29E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene67388 | 0.806167 | 9.38E-50 | -1.69E-46 |
| MS.gene060353 | MS.gene67388 | 0.819462 | 1.15E-52 | -1.69E-46 |
| MS.gene060373 | MS.gene67388 | 0.804785 | 1.83E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene67388 | 0.816166 | 6.36E-52 | -1.69E-46 |
| MS.gene060840 | MS.gene67388 | 0.805721 | 1.16E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene67388 | 0.815026 | 1.14E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene67388 | 0.809251 | 2.07E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07064 | MS.gene67388 | PPI |
| MS.gene67388 | MS.gene072691 | PPI |
| MS.gene28818 | MS.gene67388 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67388.t1 | MTR_4g062090 | 94.404 | 822 | 26 | 4 | 1 | 819 | 1 | 805 | 0.0 | 1562 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67388.t1 | AT3G46220 | 61.192 | 822 | 293 | 3 | 1 | 818 | 1 | 800 | 0.0 | 993 |
| MS.gene67388.t1 | AT3G46220 | 60.602 | 830 | 293 | 4 | 1 | 818 | 1 | 808 | 0.0 | 985 |
| MS.gene67388.t1 | AT3G46220 | 59.732 | 822 | 289 | 4 | 1 | 818 | 1 | 784 | 0.0 | 960 |
| MS.gene67388.t1 | AT3G46220 | 61.499 | 787 | 277 | 3 | 1 | 783 | 1 | 765 | 0.0 | 954 |
Find 164 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGAGCTTGGAGAGCTTTA+TGG | 0.122705 | 4.1:-37695158 | None:intergenic |
| TTCTTCCAGTCTTTGTTTAA+TGG | 0.150208 | 4.1:+37690454 | MS.gene67388:CDS |
| GGATTTGATTGCGTCTATTT+TGG | 0.155034 | 4.1:+37690135 | MS.gene67388:CDS |
| TCTAACAAAGCACACATATT+TGG | 0.182367 | 4.1:+37691497 | MS.gene67388:CDS |
| CATTGCTATTTCTCACTTGC+AGG | 0.230053 | 4.1:+37695194 | MS.gene67388:CDS |
| GGCCTTTGGCTAACAAATTA+AGG | 0.230831 | 4.1:+37692691 | MS.gene67388:CDS |
| GAGCTTCTTCATACTGCTTC+TGG | 0.232031 | 4.1:+37689183 | MS.gene67388:CDS |
| ATCATCTTCAAACAATTCTA+AGG | 0.250541 | 4.1:-37692975 | None:intergenic |
| TCCCGGAGCTCTTGCAAATA+AGG | 0.250691 | 4.1:+37693674 | MS.gene67388:CDS |
| AAATTATTACGGAGTCTTAC+TGG | 0.262997 | 4.1:+37690023 | MS.gene67388:CDS |
| CTAACAAAGCACACATATTT+GGG | 0.278844 | 4.1:+37691498 | MS.gene67388:CDS |
| TAAAGGGCCAAAGAAGAAAA+AGG | 0.281971 | 4.1:+37692315 | MS.gene67388:CDS |
| TCTGAGTACAAGAGAGCTTC+TGG | 0.282486 | 4.1:+37696907 | MS.gene67388:CDS |
| GAAGTATGTTCTTGGTTATC+AGG | 0.292210 | 4.1:-37692382 | None:intergenic |
| AGGTTTGCCTTCAGGATATC+TGG | 0.297355 | 4.1:-37691084 | None:intergenic |
| TCAAACAAGCATGCTGATAA+AGG | 0.317743 | 4.1:+37692298 | MS.gene67388:CDS |
| ATCGATCTTGCTGATGTTAC+TGG | 0.324699 | 4.1:+37689923 | MS.gene67388:CDS |
| GTAACAAGAGGTTTGCCTTC+AGG | 0.329190 | 4.1:-37691092 | None:intergenic |
| TTGGCTGTTTCAAGGTCTTT+AGG | 0.329423 | 4.1:+37692175 | MS.gene67388:CDS |
| AGACCTTGTTCTTCAAAATC+AGG | 0.330357 | 4.1:-37692562 | None:intergenic |
| AACTGCTACTGTGACTCTTT+TGG | 0.335660 | 4.1:+37696370 | MS.gene67388:CDS |
| GTTGCTGAGGTGAAGAAGTT+AGG | 0.347127 | 4.1:+37689887 | MS.gene67388:CDS |
| ATCTGTACAATTGGCACTTA+AGG | 0.350764 | 4.1:+37691400 | MS.gene67388:CDS |
| CGAAACGATTGTTAGGCCTT+TGG | 0.368181 | 4.1:+37692677 | MS.gene67388:CDS |
| GCAGAATTTACTACAAGAAA+TGG | 0.369393 | 4.1:+37690399 | MS.gene67388:CDS |
| GCTAGTGGTGTGGCTGTTGA+TGG | 0.370444 | 4.1:+37690427 | MS.gene67388:CDS |
| CAGATTCAAAGCCAGGTTCT+AGG | 0.373865 | 4.1:+37692458 | MS.gene67388:CDS |
| TAGAGTAAAGACACAACTTT+TGG | 0.377868 | 4.1:-37695040 | None:intergenic |
| CAAAGGCCTAACAATCGTTT+CGG | 0.378515 | 4.1:-37692676 | None:intergenic |
| CCAGCCCATTCAATTCTTGC+AGG | 0.389058 | 4.1:+37690931 | MS.gene67388:CDS |
| CGACGAACTTGACAGTGTTA+TGG | 0.390294 | 4.1:+37690368 | MS.gene67388:CDS |
| GCAATGGAAATGGCCCTTCC+AGG | 0.393094 | 4.1:-37695177 | None:intergenic |
| GGTATTTGCTGTTGCTCAAA+AGG | 0.395194 | 4.1:+37690684 | MS.gene67388:intron |
| TGTAAAAGATGAGGGCAATA+AGG | 0.397783 | 4.1:-37691342 | None:intergenic |
| GTTGAGTGAGTCCAGTGATA+TGG | 0.400982 | 4.1:+37692261 | MS.gene67388:CDS |
| CTTGTACTATGTTGAGAAGT+TGG | 0.407899 | 4.1:+37689952 | MS.gene67388:CDS |
| AACGAAATAGACTCGGACTT+TGG | 0.407948 | 4.1:-37693286 | None:intergenic |
| AAATTAAGGCCTACAATAAT+CGG | 0.409313 | 4.1:+37692705 | MS.gene67388:CDS |
| GAATCAAGGGGAAATTATTA+CGG | 0.415672 | 4.1:+37690012 | MS.gene67388:CDS |
| TCGATCGGATAATCGAATAC+TGG | 0.419545 | 4.1:-37689109 | None:intergenic |
| CTGCAAGAATTGAATGGGCT+GGG | 0.428207 | 4.1:-37690930 | None:intergenic |
| AGGTGCTGCAAGGGGTATTA+CGG | 0.428595 | 4.1:+37690342 | MS.gene67388:CDS |
| ATGTAGTCAGATTGCTTTGA+CGG | 0.434988 | 4.1:+37690084 | MS.gene67388:CDS |
| TAGAGACATTGGCTGTTTCA+AGG | 0.436259 | 4.1:+37692167 | MS.gene67388:CDS |
| GAGTCTATTTCGTTTGGTCC+TGG | 0.436482 | 4.1:+37693295 | MS.gene67388:CDS |
| GCCTTATTTGCAAGAGCTCC+GGG | 0.437027 | 4.1:-37693675 | None:intergenic |
| AGCCTTATTTGCAAGAGCTC+CGG | 0.440120 | 4.1:-37693676 | None:intergenic |
| AGTTACCTGCAAGAATTGAA+TGG | 0.442405 | 4.1:-37690936 | None:intergenic |
| TGATATGCTTCTTCATGACT+TGG | 0.442992 | 4.1:+37693137 | MS.gene67388:CDS |
| TCTAGCATCTCAATCATTGA+TGG | 0.444749 | 4.1:-37691128 | None:intergenic |
| CTCCATGATCCATTCTTCTG+AGG | 0.446930 | 4.1:-37692521 | None:intergenic |
| TCCATGATCCATTCTTCTGA+GGG | 0.447510 | 4.1:-37692520 | None:intergenic |
| ATGTATCCTTACCCCTTCTC+TGG | 0.448426 | 4.1:-37692423 | None:intergenic |
| TAGAAATTACTCACATCATC+AGG | 0.451733 | 4.1:-37696410 | None:intergenic |
| AAAGGCCTAACAATCGTTTC+GGG | 0.457682 | 4.1:-37692675 | None:intergenic |
| CTTCTGTCAATCTGTACAAT+TGG | 0.464761 | 4.1:+37691391 | MS.gene67388:CDS |
| AAGGACAGTAGCAGCTCCTA+TGG | 0.468025 | 4.1:+37693113 | MS.gene67388:CDS |
| GTGAGAAATAGCAATGGAAA+TGG | 0.472117 | 4.1:-37695187 | None:intergenic |
| AAAATAGGTGAAAGGAAGGC+TGG | 0.472868 | 4.1:+37690264 | MS.gene67388:intron |
| CATAAAGCTCTCCAAGCTCC+TGG | 0.473304 | 4.1:+37695159 | MS.gene67388:CDS |
| TCAGTAATCCCTCAGAAGAA+TGG | 0.473944 | 4.1:+37692512 | MS.gene67388:CDS |
| AAGTCCGAGTCTATTTCGTT+TGG | 0.475727 | 4.1:+37693289 | MS.gene67388:CDS |
| CAAACATCAGATTCAAAGCC+AGG | 0.475978 | 4.1:+37692451 | MS.gene67388:CDS |
| ACAATTGCAGCTCTTTCTCC+AGG | 0.477560 | 4.1:-37693313 | None:intergenic |
| ATCCAAGTACCGATTATTGT+AGG | 0.478083 | 4.1:-37692714 | None:intergenic |
| GTTACCTGCAAGAATTGAAT+GGG | 0.480088 | 4.1:-37690935 | None:intergenic |
| CAAACAAGCATGCTGATAAA+GGG | 0.481031 | 4.1:+37692299 | MS.gene67388:CDS |
| CAAGTCCATTAAACAAAGAC+TGG | 0.481057 | 4.1:-37690459 | None:intergenic |
| CCTGCAAGAATTGAATGGGC+TGG | 0.481773 | 4.1:-37690931 | None:intergenic |
| ACCATCACTCGCCATATCAC+TGG | 0.484013 | 4.1:-37692272 | None:intergenic |
| CATGGTTCGAGGTGCTGCAA+GGG | 0.489197 | 4.1:+37690333 | MS.gene67388:CDS |
| ATGATCCCGAAACGATTGTT+AGG | 0.490954 | 4.1:+37692670 | MS.gene67388:CDS |
| CCATGGTTCGAGGTGCTGCA+AGG | 0.490990 | 4.1:+37690332 | MS.gene67388:CDS |
| AAGAGCTCCGGGAAAACTCT+TGG | 0.491553 | 4.1:-37693664 | None:intergenic |
| TACAATAATCGGTACTTGGA+TGG | 0.492143 | 4.1:+37692716 | MS.gene67388:CDS |
| CTTGCGGCGCAGTTGAATGT+TGG | 0.492333 | 4.1:+37690109 | MS.gene67388:CDS |
| GGCCTACAATAATCGGTACT+TGG | 0.493020 | 4.1:+37692712 | MS.gene67388:CDS |
| TGTGTCTTTACTCTATGTCC+AGG | 0.495283 | 4.1:+37695048 | MS.gene67388:CDS |
| TTTGTTTAATGGACTTGTGA+AGG | 0.496709 | 4.1:+37690465 | MS.gene67388:CDS |
| AATTATTACGGAGTCTTACT+GGG | 0.499853 | 4.1:+37690024 | MS.gene67388:CDS |
| AAATGGCCCTTCCAGGAGCT+TGG | 0.501034 | 4.1:-37695170 | None:intergenic |
| GGCGCAGTTGAATGTTGGTT+TGG | 0.502490 | 4.1:+37690114 | MS.gene67388:CDS |
| TACGACGTTCTGCAGAAACT+TGG | 0.508270 | 4.1:+37690902 | MS.gene67388:CDS |
| GCAGAATTGATGTTGAATCA+AGG | 0.510377 | 4.1:+37689998 | MS.gene67388:CDS |
| GCTGAGCAGCAGCTTTATGA+AGG | 0.512016 | 4.1:+37691532 | MS.gene67388:CDS |
| CTCATTAATCTCTTCAGCAA+TGG | 0.513124 | 4.1:-37690050 | None:intergenic |
| TTGCTGAGGTGAAGAAGTTA+GGG | 0.514417 | 4.1:+37689888 | MS.gene67388:CDS |
| TTTGAAAATAGGTGAAAGGA+AGG | 0.516894 | 4.1:+37690260 | MS.gene67388:intron |
| GGCCTTAATTTGTTAGCCAA+AGG | 0.518576 | 4.1:-37692693 | None:intergenic |
| AGTGATTCTTTCCTAGAACC+TGG | 0.521168 | 4.1:-37692469 | None:intergenic |
| CCGTTCGCGCTGGAGTACAT+TGG | 0.525009 | 4.1:+37690506 | MS.gene67388:CDS |
| TCTTGCTGTTGTAGAAGCAT+TGG | 0.532428 | 4.1:+37693698 | MS.gene67388:CDS |
| CAGAATTGATGTTGAATCAA+GGG | 0.534268 | 4.1:+37689999 | MS.gene67388:CDS |
| AGAATCACTTAAAATGAAAG+AGG | 0.537589 | 4.1:+37692483 | MS.gene67388:CDS |
| AATGCCGGCTCTCAAAAGCT+TGG | 0.538599 | 4.1:+37696937 | MS.gene67388:CDS |
| TAATTCAACGACGTTTCGAT+CGG | 0.539095 | 4.1:-37689124 | None:intergenic |
| AATCTAAGAAAGGCCAGAGA+AGG | 0.539351 | 4.1:+37692410 | MS.gene67388:CDS |
| ATGCTCTAGAACGTGGAAGC+TGG | 0.540745 | 4.1:+37691165 | MS.gene67388:CDS |
| TGAACAAATGTTGTAACAAG+AGG | 0.541010 | 4.1:-37691104 | None:intergenic |
| ATTGCCAATGAAGTAAAAGC+AGG | 0.541196 | 4.1:+37692223 | MS.gene67388:CDS |
| TGTTGCTCGTGTTAGTGCCA+TGG | 0.543356 | 4.1:+37690315 | MS.gene67388:CDS |
| TTGGCAATTGGTAAATCACC+AGG | 0.544699 | 4.1:-37692208 | None:intergenic |
| TCTTTAGGCACTGCAAAACC+TGG | 0.545497 | 4.1:+37692190 | MS.gene67388:CDS |
| CCTTGCAGCACCTCGAACCA+TGG | 0.546871 | 4.1:-37690332 | None:intergenic |
| ATCTAAGAAAGGCCAGAGAA+GGG | 0.549986 | 4.1:+37692411 | MS.gene67388:CDS |
| GAAAGGCCAGAGAAGGGGTA+AGG | 0.550861 | 4.1:+37692417 | MS.gene67388:CDS |
| CGTGTTAGTGCCATGGTTCG+AGG | 0.554128 | 4.1:+37690322 | MS.gene67388:CDS |
| GATTGCTTTGACGGAACTTG+CGG | 0.554644 | 4.1:+37690093 | MS.gene67388:CDS |
| TTATCAGGACCACTTTCAGA+TGG | 0.555712 | 4.1:-37692367 | None:intergenic |
| TCCCTCAGAAGAATGGATCA+TGG | 0.557735 | 4.1:+37692519 | MS.gene67388:CDS |
| TTGTTTAATGGACTTGTGAA+GGG | 0.557946 | 4.1:+37690466 | MS.gene67388:CDS |
| GGTGAAAGAATTAGAGACAT+TGG | 0.560867 | 4.1:+37692156 | MS.gene67388:CDS |
| CATAACACTGTCAAGTTCGT+CGG | 0.561412 | 4.1:-37690367 | None:intergenic |
| AAGCTCTCCAAGCTCCTGGA+AGG | 0.562089 | 4.1:+37695163 | MS.gene67388:CDS |
| ACTTCCACAAAATCTAAGAA+AGG | 0.564114 | 4.1:+37692400 | MS.gene67388:CDS |
| TGTAGAAGCATTGGAAGGAA+AGG | 0.567169 | 4.1:+37693707 | MS.gene67388:CDS |
| CCAATGTACTCCAGCGCGAA+CGG | 0.567999 | 4.1:-37690506 | None:intergenic |
| TTAGCAAATCCATCTGAAAG+TGG | 0.572366 | 4.1:+37692358 | MS.gene67388:CDS |
| CCAGGACATTTGTGATCGCA+TGG | 0.577916 | 4.1:+37692135 | MS.gene67388:intron |
| CTAACACGAGCAACATAAGC+AGG | 0.578723 | 4.1:-37690307 | None:intergenic |
| AAAGAACGGAGTTGACGTGC+AGG | 0.578778 | 4.1:+37693258 | MS.gene67388:CDS |
| CAAGAAATGGATGGAGCTAG+TGG | 0.585358 | 4.1:+37690412 | MS.gene67388:CDS |
| TAGGTGAAAGGAAGGCTGGA+AGG | 0.586646 | 4.1:+37690268 | MS.gene67388:intron |
| CTAGCATCTCAATCATTGAT+GGG | 0.589079 | 4.1:-37691127 | None:intergenic |
| ATTTGCTAATGTATTTCCAG+TGG | 0.589588 | 4.1:-37692344 | None:intergenic |
| TGCAAGAATTGAATGGGCTG+GGG | 0.592851 | 4.1:-37690929 | None:intergenic |
| GTCTGCATTCAGAAGCGTGA+CGG | 0.593001 | 4.1:+37693941 | MS.gene67388:CDS |
| AAGCAGGGTATGATTCAAGC+AGG | 0.595048 | 4.1:+37692239 | MS.gene67388:CDS |
| TGAAGAAGCATATCAACCAT+AGG | 0.596680 | 4.1:-37693129 | None:intergenic |
| TTTGCAAAAGAAACTTGATG+AGG | 0.603716 | 4.1:+37692797 | MS.gene67388:CDS |
| AGCTCTCCAAGCTCCTGGAA+GGG | 0.607044 | 4.1:+37695164 | MS.gene67388:CDS |
| TCTTGAGGTGTAAAAGATGA+GGG | 0.608610 | 4.1:-37691350 | None:intergenic |
| GGATCAACTGAGAAATGAGA+TGG | 0.608853 | 4.1:+37689865 | MS.gene67388:intron |
| GATGCTAGATGCTGCTACTG+AGG | 0.610729 | 4.1:+37691142 | MS.gene67388:CDS |
| ATCTTGAGGTGTAAAAGATG+AGG | 0.613240 | 4.1:-37691351 | None:intergenic |
| GAGCACAACAAATTAAAGAA+CGG | 0.615383 | 4.1:+37693244 | MS.gene67388:CDS |
| AGTGATATGGCGAGTGATGG+TGG | 0.615512 | 4.1:+37692274 | MS.gene67388:CDS |
| AGAATTGATGTTGAATCAAG+GGG | 0.617194 | 4.1:+37690000 | MS.gene67388:CDS |
| TTGTGAAAAGAATGAATCCA+CGG | 0.617587 | 4.1:-37690710 | None:intergenic |
| TTTAATGGACTTGTGAAGGG+AGG | 0.618607 | 4.1:+37690469 | MS.gene67388:CDS |
| TCCAGTGATATGGCGAGTGA+TGG | 0.621503 | 4.1:+37692271 | MS.gene67388:CDS |
| TCAGAAGCGTGACGGAAGAG+AGG | 0.622187 | 4.1:+37693949 | MS.gene67388:CDS |
| GTTGGCTCAGAGTATTGTAA+CGG | 0.631287 | 4.1:+37689970 | MS.gene67388:CDS |
| TTGCCAATGAAGTAAAAGCA+GGG | 0.631451 | 4.1:+37692224 | MS.gene67388:CDS |
| GTGAAAGGAAGGCTGGAAGG+TGG | 0.632225 | 4.1:+37690271 | MS.gene67388:CDS |
| CTGCAAGTGAGAAATAGCAA+TGG | 0.632862 | 4.1:-37695193 | None:intergenic |
| GCTTCTGGAGAGCAAAATGC+CGG | 0.633423 | 4.1:+37696922 | MS.gene67388:CDS |
| GCTGTTGTAGAAGCATTGGA+AGG | 0.633896 | 4.1:+37693702 | MS.gene67388:CDS |
| TCTAAGAAAGGCCAGAGAAG+GGG | 0.639113 | 4.1:+37692412 | MS.gene67388:CDS |
| ATGGTTCGAGGTGCTGCAAG+GGG | 0.639892 | 4.1:+37690334 | MS.gene67388:CDS |
| AATTTACTACAAGAAATGGA+TGG | 0.641774 | 4.1:+37690403 | MS.gene67388:CDS |
| CTCACTATAGTTCCAAGGCG+CGG | 0.660395 | 4.1:-37690160 | None:intergenic |
| AGGACCAAACGAAATAGACT+CGG | 0.660752 | 4.1:-37693293 | None:intergenic |
| TGAAAATATTTAGGACTGCG+AGG | 0.666467 | 4.1:-37696969 | None:intergenic |
| TGTTGCTCAAAAGGAATCCG+TGG | 0.667698 | 4.1:+37690693 | MS.gene67388:CDS |
| ATTTAGTCCAGATATCCTGA+AGG | 0.672165 | 4.1:+37691077 | MS.gene67388:intron |
| ACTGAGGATGCTCTAGAACG+TGG | 0.675489 | 4.1:+37691158 | MS.gene67388:CDS |
| TGATACAGGGTCAGTCTCAG+CGG | 0.681099 | 4.1:-37695011 | None:intergenic |
| CAATTGTACAGATTGACAGA+AGG | 0.688221 | 4.1:-37691390 | None:intergenic |
| TTGCTGAAGAGATTAATGAG+AGG | 0.692613 | 4.1:+37690053 | MS.gene67388:CDS |
| GAGAAATGAGATGGTTGCTG+AGG | 0.695502 | 4.1:+37689874 | MS.gene67388:CDS |
| TAACAAAGCACACATATTTG+GGG | 0.706670 | 4.1:+37691499 | MS.gene67388:CDS |
| AATGGATGGAGCTAGTGGTG+TGG | 0.751839 | 4.1:+37690417 | MS.gene67388:CDS |
| TACTTGGATGGAGAAAACGA+AGG | 0.756060 | 4.1:+37692728 | MS.gene67388:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 37689051 | 37696982 | 37689051 | ID=MS.gene67388 |
| chr4.1 | mRNA | 37689051 | 37696982 | 37689051 | ID=MS.gene67388.t1;Parent=MS.gene67388 |
| chr4.1 | exon | 37689051 | 37689224 | 37689051 | ID=MS.gene67388.t1.exon1;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37689051 | 37689224 | 37689051 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37689866 | 37690177 | 37689866 | ID=MS.gene67388.t1.exon2;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37689866 | 37690177 | 37689866 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37690271 | 37690537 | 37690271 | ID=MS.gene67388.t1.exon3;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37690271 | 37690537 | 37690271 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37690685 | 37690732 | 37690685 | ID=MS.gene67388.t1.exon4;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37690685 | 37690732 | 37690685 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37690887 | 37690952 | 37690887 | ID=MS.gene67388.t1.exon5;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37690887 | 37690952 | 37690887 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37691083 | 37691186 | 37691083 | ID=MS.gene67388.t1.exon6;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37691083 | 37691186 | 37691083 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37691328 | 37691421 | 37691328 | ID=MS.gene67388.t1.exon7;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37691328 | 37691421 | 37691328 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37691497 | 37691553 | 37691497 | ID=MS.gene67388.t1.exon8;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37691497 | 37691553 | 37691497 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37692139 | 37692580 | 37692139 | ID=MS.gene67388.t1.exon9;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37692139 | 37692580 | 37692139 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37692664 | 37692818 | 37692664 | ID=MS.gene67388.t1.exon10;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37692664 | 37692818 | 37692664 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37692944 | 37693009 | 37692944 | ID=MS.gene67388.t1.exon11;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37692944 | 37693009 | 37692944 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37693090 | 37693158 | 37693090 | ID=MS.gene67388.t1.exon12;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37693090 | 37693158 | 37693090 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37693241 | 37693333 | 37693241 | ID=MS.gene67388.t1.exon13;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37693241 | 37693333 | 37693241 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37693663 | 37693728 | 37693663 | ID=MS.gene67388.t1.exon14;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37693663 | 37693728 | 37693663 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37693924 | 37693970 | 37693924 | ID=MS.gene67388.t1.exon15;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37693924 | 37693970 | 37693924 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37694062 | 37694125 | 37694062 | ID=MS.gene67388.t1.exon16;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37694062 | 37694125 | 37694062 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37694992 | 37695069 | 37694992 | ID=MS.gene67388.t1.exon17;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37694992 | 37695069 | 37694992 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37695153 | 37695215 | 37695153 | ID=MS.gene67388.t1.exon18;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37695153 | 37695215 | 37695153 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37696326 | 37696418 | 37696326 | ID=MS.gene67388.t1.exon19;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37696326 | 37696418 | 37696326 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| chr4.1 | exon | 37696881 | 37696982 | 37696881 | ID=MS.gene67388.t1.exon20;Parent=MS.gene67388.t1 |
| chr4.1 | CDS | 37696881 | 37696982 | 37696881 | ID=cds.MS.gene67388.t1;Parent=MS.gene67388.t1 |
| Gene Sequence |
| Protein sequence |
