Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070732.t1 | XP_003596267.1 | 91.3 | 393 | 33 | 1 | 15 | 406 | 61 | 453 | 4.40E-216 | 760.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070732.t1 | Q2TA14 | 37.3 | 421 | 224 | 11 | 16 | 405 | 59 | 470 | 1.2e-73 | 278.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070732.t1 | G7IQZ7 | 91.3 | 393 | 33 | 1 | 15 | 406 | 61 | 453 | 3.2e-216 | 760.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene070732 | MS.gene45615 | PPI |
MS.gene070732 | MS.gene60169 | PPI |
MS.gene070732 | MS.gene011684 | PPI |
MS.gene070732 | MS.gene44433 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070732.t1 | MTR_2g075300 | 91.349 | 393 | 33 | 1 | 15 | 406 | 61 | 453 | 0.0 | 756 |
MS.gene070732.t1 | MTR_2g084535 | 60.680 | 412 | 140 | 5 | 15 | 405 | 63 | 473 | 0.0 | 521 |
MS.gene070732.t1 | MTR_7g105400 | 44.524 | 420 | 196 | 8 | 16 | 405 | 61 | 473 | 1.96e-118 | 354 |
MS.gene070732.t1 | MTR_7g105390 | 43.839 | 422 | 207 | 7 | 13 | 405 | 53 | 473 | 3.92e-115 | 346 |
MS.gene070732.t1 | MTR_4g097590 | 39.690 | 451 | 219 | 10 | 3 | 405 | 51 | 496 | 1.15e-101 | 312 |
MS.gene070732.t1 | MTR_7g105390 | 42.260 | 407 | 183 | 5 | 13 | 405 | 71 | 439 | 2.37e-100 | 306 |
MS.gene070732.t1 | MTR_8g076210 | 30.260 | 423 | 230 | 18 | 15 | 403 | 21 | 412 | 1.04e-30 | 123 |
MS.gene070732.t1 | MTR_5g021530 | 28.312 | 385 | 220 | 16 | 15 | 370 | 44 | 401 | 7.89e-24 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070732.t1 | AT5G22860 | 51.942 | 412 | 174 | 7 | 15 | 405 | 62 | 470 | 2.01e-143 | 418 |
MS.gene070732.t1 | AT5G22860 | 52.513 | 398 | 165 | 7 | 15 | 391 | 62 | 456 | 1.04e-138 | 405 |
MS.gene070732.t1 | AT5G22860 | 51.969 | 381 | 159 | 7 | 15 | 374 | 62 | 439 | 7.09e-131 | 384 |
MS.gene070732.t1 | AT5G22860 | 51.969 | 381 | 159 | 7 | 15 | 374 | 62 | 439 | 7.09e-131 | 384 |
MS.gene070732.t1 | AT2G24280 | 46.028 | 428 | 198 | 7 | 7 | 405 | 42 | 465 | 9.78e-129 | 380 |
MS.gene070732.t1 | AT2G24280 | 45.088 | 397 | 185 | 7 | 7 | 374 | 42 | 434 | 5.28e-117 | 348 |
MS.gene070732.t1 | AT5G22860 | 50.565 | 354 | 151 | 7 | 15 | 347 | 62 | 412 | 1.38e-113 | 342 |
MS.gene070732.t1 | AT5G22860 | 50.565 | 354 | 151 | 7 | 15 | 347 | 62 | 412 | 1.38e-113 | 342 |
MS.gene070732.t1 | AT5G22860 | 50.565 | 354 | 151 | 7 | 15 | 347 | 62 | 412 | 1.38e-113 | 342 |
MS.gene070732.t1 | AT5G65760 | 42.657 | 429 | 213 | 7 | 5 | 405 | 56 | 479 | 1.62e-109 | 332 |
MS.gene070732.t1 | AT5G22860 | 50.329 | 304 | 128 | 6 | 15 | 298 | 62 | 362 | 1.28e-94 | 288 |
MS.gene070732.t1 | AT3G28680 | 46.243 | 173 | 88 | 3 | 130 | 297 | 18 | 190 | 5.29e-45 | 155 |
MS.gene070732.t1 | AT4G36195 | 29.124 | 388 | 214 | 16 | 15 | 370 | 53 | 411 | 2.65e-25 | 107 |
MS.gene070732.t1 | AT4G36195 | 29.124 | 388 | 214 | 16 | 15 | 370 | 53 | 411 | 2.92e-25 | 107 |
MS.gene070732.t1 | AT4G36195 | 29.124 | 388 | 214 | 16 | 15 | 370 | 53 | 411 | 2.92e-25 | 107 |
MS.gene070732.t1 | AT2G18080 | 27.456 | 397 | 232 | 15 | 15 | 381 | 53 | 423 | 1.12e-24 | 106 |
MS.gene070732.t1 | AT4G36190 | 28.645 | 391 | 216 | 16 | 13 | 370 | 51 | 411 | 2.53e-24 | 105 |
Find 112 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTCCCATATTTGCTTATT+TGG | 0.075253 | 2.1:+24238012 | MS.gene070732:CDS |
TACAATATATCTCTGTTTAA+AGG | 0.139199 | 2.1:-24237957 | None:intergenic |
TCCACCCAAATAAGCAAATA+TGG | 0.213609 | 2.1:-24238017 | None:intergenic |
TATTGTAAATTTCAAGTATT+GGG | 0.228091 | 2.1:+24237973 | MS.gene070732:CDS |
CAGCGCTTGCTGCATGGTTT+CGG | 0.295334 | 2.1:+24238968 | MS.gene070732:intron |
GCTCCCATATTTGCTTATTT+GGG | 0.300060 | 2.1:+24238013 | MS.gene070732:CDS |
ATAGCCGTAAGATGTGTTAA+AGG | 0.307501 | 2.1:-24238234 | None:intergenic |
GAACAGTGTCAGAAAGATTT+TGG | 0.314945 | 2.1:+24239867 | MS.gene070732:CDS |
TTTGCACCAGTATATTTATC+TGG | 0.315590 | 2.1:-24239610 | None:intergenic |
ACGAATCTATACGAAATTCT+TGG | 0.315860 | 2.1:+24239231 | MS.gene070732:CDS |
GCCTCACAAATAGTCGTAAC+TGG | 0.318781 | 2.1:-24239496 | None:intergenic |
CTAATGGCAGGATATTAAAT+TGG | 0.334165 | 2.1:+24240011 | MS.gene070732:intron |
CTTAGAAAGGAAAGACCATT+TGG | 0.340944 | 2.1:-24239281 | None:intergenic |
GCTGGATCACTTTCAGTTGC+AGG | 0.344531 | 2.1:-24240532 | None:intergenic |
GTTTACCCGCCACTACTATA+TGG | 0.346551 | 2.1:-24240084 | None:intergenic |
TGTTATTACAAGGGATTTCC+AGG | 0.355365 | 2.1:+24239083 | MS.gene070732:CDS |
AGAAAGTGACATTGTTAATT+CGG | 0.382135 | 2.1:+24238039 | MS.gene070732:CDS |
AGAAGTTCTGCTATATTTGA+AGG | 0.387890 | 2.1:+24238289 | MS.gene070732:CDS |
TAGTAGAGCTTTAAAAGAAT+TGG | 0.389889 | 2.1:-24238083 | None:intergenic |
GACTCAACCGTGGAAGTGTC+AGG | 0.394233 | 2.1:-24237808 | None:intergenic |
GTTGAATTTCTTGCTTAGAA+AGG | 0.397169 | 2.1:-24239294 | None:intergenic |
GTGTCCAACCTCGCCCTCAC+TGG | 0.397994 | 2.1:+24239889 | MS.gene070732:CDS |
TGCCACCTCTTGCAGTCCCT+TGG | 0.399043 | 2.1:+24239405 | MS.gene070732:intron |
ATATTGTAAATTTCAAGTAT+TGG | 0.408802 | 2.1:+24237972 | MS.gene070732:CDS |
GTTAATCCAGATAAATATAC+TGG | 0.411412 | 2.1:+24239604 | MS.gene070732:CDS |
AGATTCGTAGCATGTCTTAC+TGG | 0.414112 | 2.1:-24239216 | None:intergenic |
ATATATGCAGGTATGGTTGC+TGG | 0.421409 | 2.1:+24239559 | MS.gene070732:CDS |
ATATTAAATTGGTTCTTAAG+AGG | 0.428917 | 2.1:+24240022 | MS.gene070732:CDS |
CAGGGTTCTCAACAATATAT+CGG | 0.442697 | 2.1:+24240225 | MS.gene070732:intron |
CCACGTTGCCATCGGCGCCT+TGG | 0.446263 | 2.1:+24239002 | MS.gene070732:CDS |
CACTACTATATGGATCTCTT+AGG | 0.447409 | 2.1:-24240074 | None:intergenic |
CCCATATTTGCTTATTTGGG+TGG | 0.450847 | 2.1:+24238016 | MS.gene070732:CDS |
GTCCCCGGTGATTGTGGTTG+GGG | 0.453330 | 2.1:+24238331 | MS.gene070732:CDS |
CAGTTGCAGGCACAAGATCC+TGG | 0.454072 | 2.1:-24240519 | None:intergenic |
AGTCCCCGGTGATTGTGGTT+GGG | 0.454230 | 2.1:+24238330 | MS.gene070732:CDS |
AGTGACATTGTTAATTCGGT+TGG | 0.468415 | 2.1:+24238043 | MS.gene070732:CDS |
CTTTGTTGAACTAACCATGC+TGG | 0.474625 | 2.1:-24240550 | None:intergenic |
GCCATTGATCGAGCTGCCTA+TGG | 0.476014 | 2.1:+24239517 | MS.gene070732:CDS |
TAGCCGTAAGATGTGTTAAA+GGG | 0.480646 | 2.1:-24238233 | None:intergenic |
TCTTGTTAGCACCGGTACTA+CGG | 0.481180 | 2.1:+24238200 | MS.gene070732:intron |
CACTGGATCACCTCTTACTA+CGG | 0.483625 | 2.1:+24239906 | MS.gene070732:CDS |
GTGCAAAGCCATTTGATGCT+TGG | 0.484214 | 2.1:+24239626 | MS.gene070732:CDS |
TGCCATCTCCAAGCATCAAA+TGG | 0.486119 | 2.1:-24239634 | None:intergenic |
CAGTAGGATATATGCAGGTA+TGG | 0.493383 | 2.1:+24239552 | MS.gene070732:CDS |
CTTACCATGATGTTATTACA+AGG | 0.494198 | 2.1:+24239073 | MS.gene070732:CDS |
ATTATGCAGCGCTTGCTGCA+TGG | 0.494968 | 2.1:+24238962 | MS.gene070732:intron |
TGATCCAGTGAGGGCGAGGT+TGG | 0.500209 | 2.1:-24239893 | None:intergenic |
TACTTGACCTCCGTAGTAAG+AGG | 0.501622 | 2.1:-24239916 | None:intergenic |
CCACCCAAATAAGCAAATAT+GGG | 0.506548 | 2.1:-24238016 | None:intergenic |
CAGTGGAGCTGATGAAGCCA+AGG | 0.508009 | 2.1:-24239019 | None:intergenic |
CTTGTTAGCACCGGTACTAC+GGG | 0.513297 | 2.1:+24238201 | MS.gene070732:intron |
GTTGCCCTGCCTACAGTCAA+TGG | 0.514481 | 2.1:+24240256 | MS.gene070732:CDS |
AAGTGTCAGGGAGTTGGTGG+TGG | 0.516165 | 2.1:-24237795 | None:intergenic |
GAAGTAGCATCTAAGCCAAA+TGG | 0.516219 | 2.1:+24239266 | MS.gene070732:CDS |
TCCATAGGCAGCTCGATCAA+TGG | 0.517544 | 2.1:-24239518 | None:intergenic |
CTTGGGGAACATGTATCAAA+AGG | 0.521218 | 2.1:+24239453 | MS.gene070732:CDS |
TGATGAAGCCAAGGCGCCGA+TGG | 0.521664 | 2.1:-24239010 | None:intergenic |
AACTCATAAGGCTGTTCCAA+GGG | 0.522619 | 2.1:-24239421 | None:intergenic |
GCATACCATTGACTGTAGGC+AGG | 0.522798 | 2.1:-24240261 | None:intergenic |
AAGTCCCCGGTGATTGTGGT+TGG | 0.524318 | 2.1:+24238329 | MS.gene070732:CDS |
GTGCCCTTTAACACATCTTA+CGG | 0.525900 | 2.1:+24238230 | MS.gene070732:CDS |
ATTTGATGCTTGGAGATGGC+AGG | 0.535537 | 2.1:+24239636 | MS.gene070732:CDS |
GCAGGTATGGTTGCTGGCTA+TGG | 0.538671 | 2.1:+24239565 | MS.gene070732:CDS |
CCTCACAAATAGTCGTAACT+GGG | 0.540340 | 2.1:-24239495 | None:intergenic |
AGCCATTTGATGCTTGGAGA+TGG | 0.541350 | 2.1:+24239632 | MS.gene070732:CDS |
TGGAAGTGTCAGGGAGTTGG+TGG | 0.541921 | 2.1:-24237798 | None:intergenic |
CTCGTGAAGTTGAAAGGTTG+AGG | 0.542878 | 2.1:-24239837 | None:intergenic |
GCATAGCTCGTGAAGTTGAA+AGG | 0.545209 | 2.1:-24239843 | None:intergenic |
AATCCCTTGTAATAACATCA+TGG | 0.547144 | 2.1:-24239077 | None:intergenic |
CAAGGCGCCGATGGCAACGT+GGG | 0.551704 | 2.1:-24239001 | None:intergenic |
ATTGTAAATTTCAAGTATTG+GGG | 0.553624 | 2.1:+24237974 | MS.gene070732:CDS |
GTAAATTTCAAGTATTGGGG+TGG | 0.557803 | 2.1:+24237977 | MS.gene070732:CDS |
ATCCTCAGTAGGATATATGC+AGG | 0.558012 | 2.1:+24239547 | MS.gene070732:CDS |
AAGTATCCCCACGTTGCCAT+CGG | 0.561028 | 2.1:+24238994 | MS.gene070732:CDS |
GCACTGACTTCCCGTAGTAC+CGG | 0.561443 | 2.1:-24238211 | None:intergenic |
TGGTGGTAACAAAGAAACAT+AGG | 0.561874 | 2.1:-24237778 | None:intergenic |
TCCCCGGTGATTGTGGTTGG+GGG | 0.566819 | 2.1:+24238332 | MS.gene070732:CDS |
GAGGTGATCCAGTGAGGGCG+AGG | 0.575976 | 2.1:-24239897 | None:intergenic |
ATAGTGATGCCTATCGGCAT+AGG | 0.577307 | 2.1:+24239795 | MS.gene070732:CDS |
GAGATCCATATAGTAGTGGC+GGG | 0.578946 | 2.1:+24240079 | MS.gene070732:CDS |
CCAAGGCGCCGATGGCAACG+TGG | 0.583809 | 2.1:-24239002 | None:intergenic |
ACATCATGGTAAGCACTCGC+TGG | 0.583888 | 2.1:-24239063 | None:intergenic |
CCGTGGAAGTGTCAGGGAGT+TGG | 0.584077 | 2.1:-24237801 | None:intergenic |
TATCTGATAGATAGTTGAAG+TGG | 0.586248 | 2.1:-24237925 | None:intergenic |
GAACTTCTGCGTAATCAGCA+AGG | 0.588716 | 2.1:-24238274 | None:intergenic |
CAACTCATAAGGCTGTTCCA+AGG | 0.589093 | 2.1:-24239422 | None:intergenic |
CAAGAATTTCCTATGCCGAT+AGG | 0.596607 | 2.1:-24239804 | None:intergenic |
CATACCATTGACTGTAGGCA+GGG | 0.598779 | 2.1:-24240260 | None:intergenic |
ACTGAGGATATCATCTCCAT+AGG | 0.599988 | 2.1:-24239533 | None:intergenic |
ACTGAAATAGTGATGCCTAT+CGG | 0.607219 | 2.1:+24239789 | MS.gene070732:CDS |
AACTTCTGCGTAATCAGCAA+GGG | 0.607600 | 2.1:-24238273 | None:intergenic |
AGAGATCCATATAGTAGTGG+CGG | 0.609335 | 2.1:+24240078 | MS.gene070732:CDS |
CCCAGTTACGACTATTTGTG+AGG | 0.613777 | 2.1:+24239495 | MS.gene070732:CDS |
ACAAAAGTCCCCGGTGATTG+TGG | 0.615008 | 2.1:+24238325 | MS.gene070732:CDS |
CCAACTCCCTGACACTTCCA+CGG | 0.616998 | 2.1:+24237801 | MS.gene070732:CDS |
CTAAGAGATCCATATAGTAG+TGG | 0.623616 | 2.1:+24240075 | MS.gene070732:CDS |
TTACCATGATGTTATTACAA+GGG | 0.628091 | 2.1:+24239074 | MS.gene070732:CDS |
ATGTTATCAAAGTAGAGCAG+TGG | 0.628222 | 2.1:-24239036 | None:intergenic |
ACTCAACCGTGGAAGTGTCA+GGG | 0.633050 | 2.1:-24237807 | None:intergenic |
ATGGAGATGATATCCTCAGT+AGG | 0.636437 | 2.1:+24239536 | MS.gene070732:CDS |
AGTAAGAGGTGATCCAGTGA+GGG | 0.649906 | 2.1:-24239902 | None:intergenic |
ATATGCATACCATTGACTGT+AGG | 0.653896 | 2.1:-24240265 | None:intergenic |
AAGGCGCCGATGGCAACGTG+GGG | 0.656511 | 2.1:-24239000 | None:intergenic |
CAACTGAAAGTGATCCAGCA+TGG | 0.662989 | 2.1:+24240536 | MS.gene070732:CDS |
ACTACATGAACAAAAGTCCC+CGG | 0.665185 | 2.1:+24238316 | MS.gene070732:CDS |
TAGTAAGAGGTGATCCAGTG+AGG | 0.666324 | 2.1:-24239903 | None:intergenic |
CTCACAAATAGTCGTAACTG+GGG | 0.668632 | 2.1:-24239494 | None:intergenic |
AGCTCTACTAGTGTACATTG+AGG | 0.685630 | 2.1:+24238096 | MS.gene070732:CDS |
GGGGAACATGTATCAAAAGG+CGG | 0.688405 | 2.1:+24239456 | MS.gene070732:CDS |
TGGATCACCTCTTACTACGG+AGG | 0.695905 | 2.1:+24239909 | MS.gene070732:CDS |
TCACAAATAGTCGTAACTGG+GGG | 0.709536 | 2.1:-24239493 | None:intergenic |
TACCTGCATATATCCTACTG+AGG | 0.720985 | 2.1:-24239549 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGAAGTTAATATATAATAT+GGG | + | chr2.1:24240620-24240639 | MS.gene070732:intron | 10.0% |
!!! | TTTTTTTTTGTTTGAAAAAT+AGG | + | chr2.1:24239353-24239372 | MS.gene070732:intron | 10.0% |
!! | AAAAAAAAGAAGGAAATATA+TGG | - | chr2.1:24239341-24239360 | None:intergenic | 15.0% |
!! | AAGATCAAGTAAATAATTAT+TGG | + | chr2.1:24239688-24239707 | MS.gene070732:intron | 15.0% |
!! | GATGAAGTTAATATATAATA+TGG | + | chr2.1:24240619-24240638 | MS.gene070732:intron | 15.0% |
!! | TGAAGTTAATATATAATATG+GGG | + | chr2.1:24240621-24240640 | MS.gene070732:intron | 15.0% |
!!! | ATATTGTAAATTTCAAGTAT+TGG | + | chr2.1:24237972-24237991 | MS.gene070732:CDS | 15.0% |
!!! | TATAAAAGGTATGTTTTAAA+AGG | - | chr2.1:24238515-24238534 | None:intergenic | 15.0% |
!!! | TATTGTAAATTTCAAGTATT+GGG | + | chr2.1:24237973-24237992 | MS.gene070732:CDS | 15.0% |
!!! | TTTGATTTATCAAATATGAA+TGG | + | chr2.1:24239162-24239181 | MS.gene070732:intron | 15.0% |
!!! | TTTTCAAACAAAAAAAAAGA+AGG | - | chr2.1:24239351-24239370 | None:intergenic | 15.0% |
!! | AATTTAATTAATTGGTATGC+AGG | + | chr2.1:24239190-24239209 | MS.gene070732:intron | 20.0% |
!! | ATCAAGTAAATAATTATTGG+AGG | + | chr2.1:24239691-24239710 | MS.gene070732:intron | 20.0% |
!! | ATTTATCAAATATGAATGGA+TGG | + | chr2.1:24239166-24239185 | MS.gene070732:intron | 20.0% |
!! | GAAGTTAATATATAATATGG+GGG | + | chr2.1:24240622-24240641 | MS.gene070732:intron | 20.0% |
!! | GGTATGCTTAAAATTATAAA+AGG | - | chr2.1:24238529-24238548 | None:intergenic | 20.0% |
!! | TACAATATATCTCTGTTTAA+AGG | - | chr2.1:24237960-24237979 | None:intergenic | 20.0% |
!! | TATAGAACCATTTGATTAAT+TGG | - | chr2.1:24240463-24240482 | None:intergenic | 20.0% |
!! | TCTTAGTACATATACTAAAA+AGG | + | chr2.1:24238794-24238813 | MS.gene070732:intron | 20.0% |
!! | TGGATGGTAATTTAATTAAT+TGG | + | chr2.1:24239182-24239201 | MS.gene070732:intron | 20.0% |
!! | TTGTAAACCAATTAATCAAA+TGG | + | chr2.1:24240453-24240472 | MS.gene070732:intron | 20.0% |
!!! | AAACTATATGGTGTATTTTT+CGG | + | chr2.1:24238692-24238711 | MS.gene070732:intron | 20.0% |
!!! | AATATTTTTTTATCCAGCTT+TGG | - | chr2.1:24240597-24240616 | None:intergenic | 20.0% |
!!! | ATATTAAATTGGTTCTTAAG+AGG | + | chr2.1:24240022-24240041 | MS.gene070732:CDS | 20.0% |
!!! | ATTGTAAATTTCAAGTATTG+GGG | + | chr2.1:24237974-24237993 | MS.gene070732:CDS | 20.0% |
!!! | GGAGGTTTTTTTATATTATT+TGG | + | chr2.1:24239709-24239728 | MS.gene070732:intron | 20.0% |
!!! | TACGTACTTTTATAATGTTT+AGG | + | chr2.1:24239937-24239956 | MS.gene070732:intron | 20.0% |
!!! | TCTTTTTTGTTTATTGTTGA+AGG | + | chr2.1:24240115-24240134 | MS.gene070732:intron | 20.0% |
!!! | TTTACAAATGTTGATTTTTC+AGG | + | chr2.1:24240487-24240506 | MS.gene070732:intron | 20.0% |
! | ACAATCTCTGTTTAATTGAA+TGG | + | chr2.1:24238638-24238657 | MS.gene070732:intron | 25.0% |
! | AGAAAGTGACATTGTTAATT+CGG | + | chr2.1:24238039-24238058 | MS.gene070732:CDS | 25.0% |
! | AGATGACACTACATATAATT+AGG | - | chr2.1:24238915-24238934 | None:intergenic | 25.0% |
! | CAATCTCTGTTTAATTGAAT+GGG | + | chr2.1:24238639-24238658 | MS.gene070732:intron | 25.0% |
! | GTTAATCCAGATAAATATAC+TGG | + | chr2.1:24239604-24239623 | MS.gene070732:CDS | 25.0% |
! | GTTCATAGAAATATGTATTC+AGG | - | chr2.1:24237895-24237914 | None:intergenic | 25.0% |
! | GTTTAAAAATAAGCTTCCTT+TGG | + | chr2.1:24240189-24240208 | MS.gene070732:intron | 25.0% |
! | TTACCATGATGTTATTACAA+GGG | + | chr2.1:24239074-24239093 | MS.gene070732:CDS | 25.0% |
!! | AAAAAAATATAGTTTGCGAC+AGG | - | chr2.1:24238764-24238783 | None:intergenic | 25.0% |
!! | AAAAAATATAGTTTGCGACA+GGG | - | chr2.1:24238763-24238782 | None:intergenic | 25.0% |
!! | TATGAGTTGAAAAACTACTT+GGG | + | chr2.1:24239436-24239455 | MS.gene070732:CDS | 25.0% |
!! | TTATGAGTTGAAAAACTACT+TGG | + | chr2.1:24239435-24239454 | MS.gene070732:CDS | 25.0% |
!!! | AAAACAAAGTCTTATTGTGT+TGG | + | chr2.1:24238881-24238900 | MS.gene070732:intron | 25.0% |
!!! | AAGTAGTTTTTCAACTCATA+AGG | - | chr2.1:24239436-24239455 | None:intergenic | 25.0% |
!!! | ATACACCATATAGTTTTACT+TGG | - | chr2.1:24238688-24238707 | None:intergenic | 25.0% |
!!! | TAGTAGAGCTTTAAAAGAAT+TGG | - | chr2.1:24238086-24238105 | None:intergenic | 25.0% |
!!! | TTTAATTTTCTTGTTAGCAC+CGG | + | chr2.1:24238192-24238211 | MS.gene070732:intron | 25.0% |
!!! | TTTGGCTTTTATATACTTCA+GGG | + | chr2.1:24240207-24240226 | MS.gene070732:intron | 25.0% |
!!! | TTTGTTAAGTTTTGGAAAGA+TGG | + | chr2.1:24240650-24240669 | MS.gene070732:intron | 25.0% |
AATCCCTTGTAATAACATCA+TGG | - | chr2.1:24239080-24239099 | None:intergenic | 30.0% | |
ACGAATCTATACGAAATTCT+TGG | + | chr2.1:24239231-24239250 | MS.gene070732:CDS | 30.0% | |
AGAAGTTCTGCTATATTTGA+AGG | + | chr2.1:24238289-24238308 | MS.gene070732:CDS | 30.0% | |
CAGGTCTTCAATTAAATCTA+AGG | - | chr2.1:24237876-24237895 | None:intergenic | 30.0% | |
CTAATGGCAGGATATTAAAT+TGG | + | chr2.1:24240011-24240030 | MS.gene070732:intron | 30.0% | |
CTGAAGTATATAAAAGCCAA+AGG | - | chr2.1:24240208-24240227 | None:intergenic | 30.0% | |
CTTACCATGATGTTATTACA+AGG | + | chr2.1:24239073-24239092 | MS.gene070732:CDS | 30.0% | |
GTTGAATTTCTTGCTTAGAA+AGG | - | chr2.1:24239297-24239316 | None:intergenic | 30.0% | |
TATCTGATAGATAGTTGAAG+TGG | - | chr2.1:24237928-24237947 | None:intergenic | 30.0% | |
TATGAAGCAGAAACTTTCTT+TGG | - | chr2.1:24238550-24238569 | None:intergenic | 30.0% | |
TTGAAAAAGCAGAAAAACGA+TGG | - | chr2.1:24238415-24238434 | None:intergenic | 30.0% | |
TTTGCACCAGTATATTTATC+TGG | - | chr2.1:24239613-24239632 | None:intergenic | 30.0% | |
! | AGCAACATCATTTTCTCAAA+TGG | + | chr2.1:24240051-24240070 | MS.gene070732:CDS | 30.0% |
! | ATGAGTTGAAAAACTACTTG+GGG | + | chr2.1:24239437-24239456 | MS.gene070732:CDS | 30.0% |
! | GTAGTTTTCCATTGTGAAAA+TGG | - | chr2.1:24237833-24237852 | None:intergenic | 30.0% |
!! | AATAACTATGCTGATTTACC+TGG | - | chr2.1:24239104-24239123 | None:intergenic | 30.0% |
!! | AATCTAAGGTTTTAGCGTTT+TGG | - | chr2.1:24237862-24237881 | None:intergenic | 30.0% |
!!! | CTTTGGCTTTTATATACTTC+AGG | + | chr2.1:24240206-24240225 | MS.gene070732:intron | 30.0% |
!!! | TAATTCGGTTGGTTTTATGA+CGG | + | chr2.1:24238054-24238073 | MS.gene070732:CDS | 30.0% |
AATTGCATCGTTGTGACTAA+TGG | + | chr2.1:24239995-24240014 | MS.gene070732:intron | 35.0% | |
ACTGAAATAGTGATGCCTAT+CGG | + | chr2.1:24239789-24239808 | MS.gene070732:CDS | 35.0% | |
AGTGACATTGTTAATTCGGT+TGG | + | chr2.1:24238043-24238062 | MS.gene070732:CDS | 35.0% | |
AGTTCAACAAAGGAATACAG+AGG | + | chr2.1:24240561-24240580 | MS.gene070732:intron | 35.0% | |
ATAGCCGTAAGATGTGTTAA+AGG | - | chr2.1:24238237-24238256 | None:intergenic | 35.0% | |
ATGTTATCAAAGTAGAGCAG+TGG | - | chr2.1:24239039-24239058 | None:intergenic | 35.0% | |
CACTACTATATGGATCTCTT+AGG | - | chr2.1:24240077-24240096 | None:intergenic | 35.0% | |
CAGGGTTCTCAACAATATAT+CGG | + | chr2.1:24240225-24240244 | MS.gene070732:intron | 35.0% | |
CCACCCAAATAAGCAAATAT+GGG | - | chr2.1:24238019-24238038 | None:intergenic | 35.0% | |
CTAAGAGATCCATATAGTAG+TGG | + | chr2.1:24240075-24240094 | MS.gene070732:CDS | 35.0% | |
CTTAGAAAGGAAAGACCATT+TGG | - | chr2.1:24239284-24239303 | None:intergenic | 35.0% | |
GCTATCATCAATGTGATGAT+TGG | - | chr2.1:24238734-24238753 | None:intergenic | 35.0% | |
GCTCCCATATTTGCTTATTT+GGG | + | chr2.1:24238013-24238032 | MS.gene070732:CDS | 35.0% | |
GTGCACCAAGTAAAACTATA+TGG | + | chr2.1:24238680-24238699 | MS.gene070732:intron | 35.0% | |
TAGCCGTAAGATGTGTTAAA+GGG | - | chr2.1:24238236-24238255 | None:intergenic | 35.0% | |
TCCACCCAAATAAGCAAATA+TGG | - | chr2.1:24238020-24238039 | None:intergenic | 35.0% | |
TGATGATTGGCAGATTATTG+AGG | - | chr2.1:24238721-24238740 | None:intergenic | 35.0% | |
TGCTCCCATATTTGCTTATT+TGG | + | chr2.1:24238012-24238031 | MS.gene070732:CDS | 35.0% | |
TGTTATTACAAGGGATTTCC+AGG | + | chr2.1:24239083-24239102 | MS.gene070732:CDS | 35.0% | |
! | ATATGCATACCATTGACTGT+AGG | - | chr2.1:24240268-24240287 | None:intergenic | 35.0% |
! | GAACAGTGTCAGAAAGATTT+TGG | + | chr2.1:24239867-24239886 | MS.gene070732:CDS | 35.0% |
! | GGATATCTTTTGTCAAGACT+TGG | + | chr2.1:24238815-24238834 | MS.gene070732:intron | 35.0% |
!! | GGGATGTGTTTGTTAAGTTT+TGG | + | chr2.1:24240642-24240661 | MS.gene070732:intron | 35.0% |
!! | GTAAATTTCAAGTATTGGGG+TGG | + | chr2.1:24237977-24237996 | MS.gene070732:CDS | 35.0% |
!!! | TTTTTCAGGATATCATTGCC+AGG | + | chr2.1:24240501-24240520 | MS.gene070732:intron | 35.0% |
AACTCATAAGGCTGTTCCAA+GGG | - | chr2.1:24239424-24239443 | None:intergenic | 40.0% | |
AACTTCTGCGTAATCAGCAA+GGG | - | chr2.1:24238276-24238295 | None:intergenic | 40.0% | |
ACTACATGAACAAAAGTCCC+CGG | + | chr2.1:24238316-24238335 | MS.gene070732:CDS | 40.0% | |
ACTGAGGATATCATCTCCAT+AGG | - | chr2.1:24239536-24239555 | None:intergenic | 40.0% | |
AGAGATCCATATAGTAGTGG+CGG | + | chr2.1:24240078-24240097 | MS.gene070732:CDS | 40.0% | |
AGATTCGTAGCATGTCTTAC+TGG | - | chr2.1:24239219-24239238 | None:intergenic | 40.0% | |
AGCTCTACTAGTGTACATTG+AGG | + | chr2.1:24238096-24238115 | MS.gene070732:CDS | 40.0% | |
AGGTTGAGATAATCCAAAGC+TGG | + | chr2.1:24240581-24240600 | MS.gene070732:intron | 40.0% | |
ATATATGCAGGTATGGTTGC+TGG | + | chr2.1:24239559-24239578 | MS.gene070732:CDS | 40.0% | |
ATCCTCAGTAGGATATATGC+AGG | + | chr2.1:24239547-24239566 | MS.gene070732:CDS | 40.0% | |
ATGGAGATGATATCCTCAGT+AGG | + | chr2.1:24239536-24239555 | MS.gene070732:CDS | 40.0% | |
CAAGAATTTCCTATGCCGAT+AGG | - | chr2.1:24239807-24239826 | None:intergenic | 40.0% | |
CAGTAGGATATATGCAGGTA+TGG | + | chr2.1:24239552-24239571 | MS.gene070732:CDS | 40.0% | |
CCCATATTTGCTTATTTGGG+TGG | + | chr2.1:24238016-24238035 | MS.gene070732:CDS | 40.0% | |
CCTCACAAATAGTCGTAACT+GGG | - | chr2.1:24239498-24239517 | None:intergenic | 40.0% | |
CTCACAAATAGTCGTAACTG+GGG | - | chr2.1:24239497-24239516 | None:intergenic | 40.0% | |
CTTGGGGAACATGTATCAAA+AGG | + | chr2.1:24239453-24239472 | MS.gene070732:CDS | 40.0% | |
CTTTGTTGAACTAACCATGC+TGG | - | chr2.1:24240553-24240572 | None:intergenic | 40.0% | |
GAAGTAGCATCTAAGCCAAA+TGG | + | chr2.1:24239266-24239285 | MS.gene070732:CDS | 40.0% | |
GTGCCCTTTAACACATCTTA+CGG | + | chr2.1:24238230-24238249 | MS.gene070732:CDS | 40.0% | |
TACCTGCATATATCCTACTG+AGG | - | chr2.1:24239552-24239571 | None:intergenic | 40.0% | |
TCACAAATAGTCGTAACTGG+GGG | - | chr2.1:24239496-24239515 | None:intergenic | 40.0% | |
! | CAGCATGGTTAGTTCAACAA+AGG | + | chr2.1:24240551-24240570 | MS.gene070732:intron | 40.0% |
! | GGTTGAGTCCATTTTCACAA+TGG | + | chr2.1:24237822-24237841 | MS.gene070732:intron | 40.0% |
AGCCATTTGATGCTTGGAGA+TGG | + | chr2.1:24239632-24239651 | MS.gene070732:CDS | 45.0% | |
AGTAAGAGGTGATCCAGTGA+GGG | - | chr2.1:24239905-24239924 | None:intergenic | 45.0% | |
ATAGTGATGCCTATCGGCAT+AGG | + | chr2.1:24239795-24239814 | MS.gene070732:CDS | 45.0% | |
ATTTGATGCTTGGAGATGGC+AGG | + | chr2.1:24239636-24239655 | MS.gene070732:CDS | 45.0% | |
CAACTCATAAGGCTGTTCCA+AGG | - | chr2.1:24239425-24239444 | None:intergenic | 45.0% | |
CAACTGAAAGTGATCCAGCA+TGG | + | chr2.1:24240536-24240555 | MS.gene070732:CDS | 45.0% | |
CACTGGATCACCTCTTACTA+CGG | + | chr2.1:24239906-24239925 | MS.gene070732:CDS | 45.0% | |
CCCAGTTACGACTATTTGTG+AGG | + | chr2.1:24239495-24239514 | MS.gene070732:CDS | 45.0% | |
CTCGTGAAGTTGAAAGGTTG+AGG | - | chr2.1:24239840-24239859 | None:intergenic | 45.0% | |
GAACTTCTGCGTAATCAGCA+AGG | - | chr2.1:24238277-24238296 | None:intergenic | 45.0% | |
GAGATCCATATAGTAGTGGC+GGG | + | chr2.1:24240079-24240098 | MS.gene070732:CDS | 45.0% | |
GCATAGCTCGTGAAGTTGAA+AGG | - | chr2.1:24239846-24239865 | None:intergenic | 45.0% | |
GCCTCACAAATAGTCGTAAC+TGG | - | chr2.1:24239499-24239518 | None:intergenic | 45.0% | |
GGGGAACATGTATCAAAAGG+CGG | + | chr2.1:24239456-24239475 | MS.gene070732:CDS | 45.0% | |
GTGCAAAGCCATTTGATGCT+TGG | + | chr2.1:24239626-24239645 | MS.gene070732:CDS | 45.0% | |
GTTTACCCGCCACTACTATA+TGG | - | chr2.1:24240087-24240106 | None:intergenic | 45.0% | |
TACTTGACCTCCGTAGTAAG+AGG | - | chr2.1:24239919-24239938 | None:intergenic | 45.0% | |
TAGTAAGAGGTGATCCAGTG+AGG | - | chr2.1:24239906-24239925 | None:intergenic | 45.0% | |
TGCCATCTCCAAGCATCAAA+TGG | - | chr2.1:24239637-24239656 | None:intergenic | 45.0% | |
! | CATACCATTGACTGTAGGCA+GGG | - | chr2.1:24240263-24240282 | None:intergenic | 45.0% |
! | TGTGAAAATGGACTCAACCG+TGG | - | chr2.1:24237821-24237840 | None:intergenic | 45.0% |
!! | TCTTGTTAGCACCGGTACTA+CGG | + | chr2.1:24238200-24238219 | MS.gene070732:intron | 45.0% |
!! | AAATATAATTTAAATATAAC+AGG | - | chr2.1:24238454-24238473 | None:intergenic | 5.0% |
AAGTATCCCCACGTTGCCAT+CGG | + | chr2.1:24238994-24239013 | MS.gene070732:CDS | 50.0% | |
ACAAAAGTCCCCGGTGATTG+TGG | + | chr2.1:24238325-24238344 | MS.gene070732:CDS | 50.0% | |
ACATCATGGTAAGCACTCGC+TGG | - | chr2.1:24239066-24239085 | None:intergenic | 50.0% | |
GCATCGTTGTGACTAATGGC+AGG | + | chr2.1:24239999-24240018 | MS.gene070732:intron | 50.0% | |
GCTGGATCACTTTCAGTTGC+AGG | - | chr2.1:24240535-24240554 | None:intergenic | 50.0% | |
TCCATAGGCAGCTCGATCAA+TGG | - | chr2.1:24239521-24239540 | None:intergenic | 50.0% | |
TGGATCACCTCTTACTACGG+AGG | + | chr2.1:24239909-24239928 | MS.gene070732:CDS | 50.0% | |
! | ATTATGCAGCGCTTGCTGCA+TGG | + | chr2.1:24238962-24238981 | MS.gene070732:intron | 50.0% |
! | GCATACCATTGACTGTAGGC+AGG | - | chr2.1:24240264-24240283 | None:intergenic | 50.0% |
!! | ACTCAACCGTGGAAGTGTCA+GGG | - | chr2.1:24237810-24237829 | None:intergenic | 50.0% |
!! | CTTGTTAGCACCGGTACTAC+GGG | + | chr2.1:24238201-24238220 | MS.gene070732:intron | 50.0% |
AAGTCCCCGGTGATTGTGGT+TGG | + | chr2.1:24238329-24238348 | MS.gene070732:CDS | 55.0% | |
AGTCCCCGGTGATTGTGGTT+GGG | + | chr2.1:24238330-24238349 | MS.gene070732:CDS | 55.0% | |
ATCCCCCAACCACAATCACC+GGG | - | chr2.1:24238337-24238356 | None:intergenic | 55.0% | |
CAGTGGAGCTGATGAAGCCA+AGG | - | chr2.1:24239022-24239041 | None:intergenic | 55.0% | |
CAGTTGCAGGCACAAGATCC+TGG | - | chr2.1:24240522-24240541 | None:intergenic | 55.0% | |
CCAACTCCCTGACACTTCCA+CGG | + | chr2.1:24237801-24237820 | MS.gene070732:CDS | 55.0% | |
CTGTTCCAAGGGACTGCAAG+AGG | - | chr2.1:24239413-24239432 | None:intergenic | 55.0% | |
GATCCCCCAACCACAATCAC+CGG | - | chr2.1:24238338-24238357 | None:intergenic | 55.0% | |
GCCATTGATCGAGCTGCCTA+TGG | + | chr2.1:24239517-24239536 | MS.gene070732:CDS | 55.0% | |
GTTGCCCTGCCTACAGTCAA+TGG | + | chr2.1:24240256-24240275 | MS.gene070732:CDS | 55.0% | |
TTCCAAGGGACTGCAAGAGG+TGG | - | chr2.1:24239410-24239429 | None:intergenic | 55.0% | |
! | CAGCGCTTGCTGCATGGTTT+CGG | + | chr2.1:24238968-24238987 | MS.gene070732:intron | 55.0% |
! | GCAGGTATGGTTGCTGGCTA+TGG | + | chr2.1:24239565-24239584 | MS.gene070732:CDS | 55.0% |
!! | AAGTGTCAGGGAGTTGGTGG+TGG | - | chr2.1:24237798-24237817 | None:intergenic | 55.0% |
!! | GACTCAACCGTGGAAGTGTC+AGG | - | chr2.1:24237811-24237830 | None:intergenic | 55.0% |
!! | GCACTGACTTCCCGTAGTAC+CGG | - | chr2.1:24238214-24238233 | None:intergenic | 55.0% |
!! | TGGAAGTGTCAGGGAGTTGG+TGG | - | chr2.1:24237801-24237820 | None:intergenic | 55.0% |
GTCCCCGGTGATTGTGGTTG+GGG | + | chr2.1:24238331-24238350 | MS.gene070732:CDS | 60.0% | |
GTGGTTGGGGGATCATACGC+TGG | + | chr2.1:24238344-24238363 | MS.gene070732:CDS | 60.0% | |
TCCCCCAACCACAATCACCG+GGG | - | chr2.1:24238336-24238355 | None:intergenic | 60.0% | |
TCCCCGGTGATTGTGGTTGG+GGG | + | chr2.1:24238332-24238351 | MS.gene070732:CDS | 60.0% | |
TGATCCAGTGAGGGCGAGGT+TGG | - | chr2.1:24239896-24239915 | None:intergenic | 60.0% | |
TGCCACCTCTTGCAGTCCCT+TGG | + | chr2.1:24239405-24239424 | MS.gene070732:intron | 60.0% | |
!! | CCGTGGAAGTGTCAGGGAGT+TGG | - | chr2.1:24237804-24237823 | None:intergenic | 60.0% |
!! | TGATGAAGCCAAGGCGCCGA+TGG | - | chr2.1:24239013-24239032 | None:intergenic | 60.0% |
GAGGTGATCCAGTGAGGGCG+AGG | - | chr2.1:24239900-24239919 | None:intergenic | 65.0% | |
GTGTCCAACCTCGCCCTCAC+TGG | + | chr2.1:24239889-24239908 | MS.gene070732:CDS | 65.0% | |
!! | AAGGCGCCGATGGCAACGTG+GGG | - | chr2.1:24239003-24239022 | None:intergenic | 65.0% |
!! | CAAGGCGCCGATGGCAACGT+GGG | - | chr2.1:24239004-24239023 | None:intergenic | 65.0% |
CCACGTTGCCATCGGCGCCT+TGG | + | chr2.1:24239002-24239021 | MS.gene070732:CDS | 70.0% | |
!! | CCAAGGCGCCGATGGCAACG+TGG | - | chr2.1:24239005-24239024 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 24237781 | 24240683 | 24237781 | ID=MS.gene070732 |
chr2.1 | mRNA | 24237781 | 24240683 | 24237781 | ID=MS.gene070732.t1;Parent=MS.gene070732 |
chr2.1 | exon | 24237781 | 24237822 | 24237781 | ID=MS.gene070732.t1.exon1;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24237781 | 24237822 | 24237781 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
chr2.1 | exon | 24237917 | 24238117 | 24237917 | ID=MS.gene070732.t1.exon2;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24237917 | 24238117 | 24237917 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
chr2.1 | exon | 24238209 | 24238368 | 24238209 | ID=MS.gene070732.t1.exon3;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24238209 | 24238368 | 24238209 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
chr2.1 | exon | 24238971 | 24239104 | 24238971 | ID=MS.gene070732.t1.exon4;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24238971 | 24239104 | 24238971 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
chr2.1 | exon | 24239212 | 24239324 | 24239212 | ID=MS.gene070732.t1.exon5;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24239212 | 24239324 | 24239212 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
chr2.1 | exon | 24239420 | 24239657 | 24239420 | ID=MS.gene070732.t1.exon6;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24239420 | 24239657 | 24239420 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
chr2.1 | exon | 24239783 | 24239935 | 24239783 | ID=MS.gene070732.t1.exon7;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24239783 | 24239935 | 24239783 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
chr2.1 | exon | 24240021 | 24240100 | 24240021 | ID=MS.gene070732.t1.exon8;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24240021 | 24240100 | 24240021 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
chr2.1 | exon | 24240228 | 24240277 | 24240228 | ID=MS.gene070732.t1.exon9;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24240228 | 24240277 | 24240228 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
chr2.1 | exon | 24240509 | 24240557 | 24240509 | ID=MS.gene070732.t1.exon10;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24240509 | 24240557 | 24240509 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
chr2.1 | exon | 24240659 | 24240683 | 24240659 | ID=MS.gene070732.t1.exon11;Parent=MS.gene070732.t1 |
chr2.1 | CDS | 24240659 | 24240683 | 24240659 | ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1 |
Gene Sequence |
Protein sequence |