AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070732


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070732.t1 MTR_2g075300 91.349 393 33 1 15 406 61 453 0.0 756
MS.gene070732.t1 MTR_2g084535 60.680 412 140 5 15 405 63 473 0.0 521
MS.gene070732.t1 MTR_7g105400 44.524 420 196 8 16 405 61 473 1.96e-118 354
MS.gene070732.t1 MTR_7g105390 43.839 422 207 7 13 405 53 473 3.92e-115 346
MS.gene070732.t1 MTR_4g097590 39.690 451 219 10 3 405 51 496 1.15e-101 312
MS.gene070732.t1 MTR_7g105390 42.260 407 183 5 13 405 71 439 2.37e-100 306
MS.gene070732.t1 MTR_8g076210 30.260 423 230 18 15 403 21 412 1.04e-30 123
MS.gene070732.t1 MTR_5g021530 28.312 385 220 16 15 370 44 401 7.89e-24 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070732.t1 AT5G22860 51.942 412 174 7 15 405 62 470 2.01e-143 418
MS.gene070732.t1 AT5G22860 52.513 398 165 7 15 391 62 456 1.04e-138 405
MS.gene070732.t1 AT5G22860 51.969 381 159 7 15 374 62 439 7.09e-131 384
MS.gene070732.t1 AT5G22860 51.969 381 159 7 15 374 62 439 7.09e-131 384
MS.gene070732.t1 AT2G24280 46.028 428 198 7 7 405 42 465 9.78e-129 380
MS.gene070732.t1 AT2G24280 45.088 397 185 7 7 374 42 434 5.28e-117 348
MS.gene070732.t1 AT5G22860 50.565 354 151 7 15 347 62 412 1.38e-113 342
MS.gene070732.t1 AT5G22860 50.565 354 151 7 15 347 62 412 1.38e-113 342
MS.gene070732.t1 AT5G22860 50.565 354 151 7 15 347 62 412 1.38e-113 342
MS.gene070732.t1 AT5G65760 42.657 429 213 7 5 405 56 479 1.62e-109 332
MS.gene070732.t1 AT5G22860 50.329 304 128 6 15 298 62 362 1.28e-94 288
MS.gene070732.t1 AT3G28680 46.243 173 88 3 130 297 18 190 5.29e-45 155
MS.gene070732.t1 AT4G36195 29.124 388 214 16 15 370 53 411 2.65e-25 107
MS.gene070732.t1 AT4G36195 29.124 388 214 16 15 370 53 411 2.92e-25 107
MS.gene070732.t1 AT4G36195 29.124 388 214 16 15 370 53 411 2.92e-25 107
MS.gene070732.t1 AT2G18080 27.456 397 232 15 15 381 53 423 1.12e-24 106
MS.gene070732.t1 AT4G36190 28.645 391 216 16 13 370 51 411 2.53e-24 105

Find 112 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCCATATTTGCTTATT+TGG 0.075253 2.1:+24238012 MS.gene070732:CDS
TACAATATATCTCTGTTTAA+AGG 0.139199 2.1:-24237957 None:intergenic
TCCACCCAAATAAGCAAATA+TGG 0.213609 2.1:-24238017 None:intergenic
TATTGTAAATTTCAAGTATT+GGG 0.228091 2.1:+24237973 MS.gene070732:CDS
CAGCGCTTGCTGCATGGTTT+CGG 0.295334 2.1:+24238968 MS.gene070732:intron
GCTCCCATATTTGCTTATTT+GGG 0.300060 2.1:+24238013 MS.gene070732:CDS
ATAGCCGTAAGATGTGTTAA+AGG 0.307501 2.1:-24238234 None:intergenic
GAACAGTGTCAGAAAGATTT+TGG 0.314945 2.1:+24239867 MS.gene070732:CDS
TTTGCACCAGTATATTTATC+TGG 0.315590 2.1:-24239610 None:intergenic
ACGAATCTATACGAAATTCT+TGG 0.315860 2.1:+24239231 MS.gene070732:CDS
GCCTCACAAATAGTCGTAAC+TGG 0.318781 2.1:-24239496 None:intergenic
CTAATGGCAGGATATTAAAT+TGG 0.334165 2.1:+24240011 MS.gene070732:intron
CTTAGAAAGGAAAGACCATT+TGG 0.340944 2.1:-24239281 None:intergenic
GCTGGATCACTTTCAGTTGC+AGG 0.344531 2.1:-24240532 None:intergenic
GTTTACCCGCCACTACTATA+TGG 0.346551 2.1:-24240084 None:intergenic
TGTTATTACAAGGGATTTCC+AGG 0.355365 2.1:+24239083 MS.gene070732:CDS
AGAAAGTGACATTGTTAATT+CGG 0.382135 2.1:+24238039 MS.gene070732:CDS
AGAAGTTCTGCTATATTTGA+AGG 0.387890 2.1:+24238289 MS.gene070732:CDS
TAGTAGAGCTTTAAAAGAAT+TGG 0.389889 2.1:-24238083 None:intergenic
GACTCAACCGTGGAAGTGTC+AGG 0.394233 2.1:-24237808 None:intergenic
GTTGAATTTCTTGCTTAGAA+AGG 0.397169 2.1:-24239294 None:intergenic
GTGTCCAACCTCGCCCTCAC+TGG 0.397994 2.1:+24239889 MS.gene070732:CDS
TGCCACCTCTTGCAGTCCCT+TGG 0.399043 2.1:+24239405 MS.gene070732:intron
ATATTGTAAATTTCAAGTAT+TGG 0.408802 2.1:+24237972 MS.gene070732:CDS
GTTAATCCAGATAAATATAC+TGG 0.411412 2.1:+24239604 MS.gene070732:CDS
AGATTCGTAGCATGTCTTAC+TGG 0.414112 2.1:-24239216 None:intergenic
ATATATGCAGGTATGGTTGC+TGG 0.421409 2.1:+24239559 MS.gene070732:CDS
ATATTAAATTGGTTCTTAAG+AGG 0.428917 2.1:+24240022 MS.gene070732:CDS
CAGGGTTCTCAACAATATAT+CGG 0.442697 2.1:+24240225 MS.gene070732:intron
CCACGTTGCCATCGGCGCCT+TGG 0.446263 2.1:+24239002 MS.gene070732:CDS
CACTACTATATGGATCTCTT+AGG 0.447409 2.1:-24240074 None:intergenic
CCCATATTTGCTTATTTGGG+TGG 0.450847 2.1:+24238016 MS.gene070732:CDS
GTCCCCGGTGATTGTGGTTG+GGG 0.453330 2.1:+24238331 MS.gene070732:CDS
CAGTTGCAGGCACAAGATCC+TGG 0.454072 2.1:-24240519 None:intergenic
AGTCCCCGGTGATTGTGGTT+GGG 0.454230 2.1:+24238330 MS.gene070732:CDS
AGTGACATTGTTAATTCGGT+TGG 0.468415 2.1:+24238043 MS.gene070732:CDS
CTTTGTTGAACTAACCATGC+TGG 0.474625 2.1:-24240550 None:intergenic
GCCATTGATCGAGCTGCCTA+TGG 0.476014 2.1:+24239517 MS.gene070732:CDS
TAGCCGTAAGATGTGTTAAA+GGG 0.480646 2.1:-24238233 None:intergenic
TCTTGTTAGCACCGGTACTA+CGG 0.481180 2.1:+24238200 MS.gene070732:intron
CACTGGATCACCTCTTACTA+CGG 0.483625 2.1:+24239906 MS.gene070732:CDS
GTGCAAAGCCATTTGATGCT+TGG 0.484214 2.1:+24239626 MS.gene070732:CDS
TGCCATCTCCAAGCATCAAA+TGG 0.486119 2.1:-24239634 None:intergenic
CAGTAGGATATATGCAGGTA+TGG 0.493383 2.1:+24239552 MS.gene070732:CDS
CTTACCATGATGTTATTACA+AGG 0.494198 2.1:+24239073 MS.gene070732:CDS
ATTATGCAGCGCTTGCTGCA+TGG 0.494968 2.1:+24238962 MS.gene070732:intron
TGATCCAGTGAGGGCGAGGT+TGG 0.500209 2.1:-24239893 None:intergenic
TACTTGACCTCCGTAGTAAG+AGG 0.501622 2.1:-24239916 None:intergenic
CCACCCAAATAAGCAAATAT+GGG 0.506548 2.1:-24238016 None:intergenic
CAGTGGAGCTGATGAAGCCA+AGG 0.508009 2.1:-24239019 None:intergenic
CTTGTTAGCACCGGTACTAC+GGG 0.513297 2.1:+24238201 MS.gene070732:intron
GTTGCCCTGCCTACAGTCAA+TGG 0.514481 2.1:+24240256 MS.gene070732:CDS
AAGTGTCAGGGAGTTGGTGG+TGG 0.516165 2.1:-24237795 None:intergenic
GAAGTAGCATCTAAGCCAAA+TGG 0.516219 2.1:+24239266 MS.gene070732:CDS
TCCATAGGCAGCTCGATCAA+TGG 0.517544 2.1:-24239518 None:intergenic
CTTGGGGAACATGTATCAAA+AGG 0.521218 2.1:+24239453 MS.gene070732:CDS
TGATGAAGCCAAGGCGCCGA+TGG 0.521664 2.1:-24239010 None:intergenic
AACTCATAAGGCTGTTCCAA+GGG 0.522619 2.1:-24239421 None:intergenic
GCATACCATTGACTGTAGGC+AGG 0.522798 2.1:-24240261 None:intergenic
AAGTCCCCGGTGATTGTGGT+TGG 0.524318 2.1:+24238329 MS.gene070732:CDS
GTGCCCTTTAACACATCTTA+CGG 0.525900 2.1:+24238230 MS.gene070732:CDS
ATTTGATGCTTGGAGATGGC+AGG 0.535537 2.1:+24239636 MS.gene070732:CDS
GCAGGTATGGTTGCTGGCTA+TGG 0.538671 2.1:+24239565 MS.gene070732:CDS
CCTCACAAATAGTCGTAACT+GGG 0.540340 2.1:-24239495 None:intergenic
AGCCATTTGATGCTTGGAGA+TGG 0.541350 2.1:+24239632 MS.gene070732:CDS
TGGAAGTGTCAGGGAGTTGG+TGG 0.541921 2.1:-24237798 None:intergenic
CTCGTGAAGTTGAAAGGTTG+AGG 0.542878 2.1:-24239837 None:intergenic
GCATAGCTCGTGAAGTTGAA+AGG 0.545209 2.1:-24239843 None:intergenic
AATCCCTTGTAATAACATCA+TGG 0.547144 2.1:-24239077 None:intergenic
CAAGGCGCCGATGGCAACGT+GGG 0.551704 2.1:-24239001 None:intergenic
ATTGTAAATTTCAAGTATTG+GGG 0.553624 2.1:+24237974 MS.gene070732:CDS
GTAAATTTCAAGTATTGGGG+TGG 0.557803 2.1:+24237977 MS.gene070732:CDS
ATCCTCAGTAGGATATATGC+AGG 0.558012 2.1:+24239547 MS.gene070732:CDS
AAGTATCCCCACGTTGCCAT+CGG 0.561028 2.1:+24238994 MS.gene070732:CDS
GCACTGACTTCCCGTAGTAC+CGG 0.561443 2.1:-24238211 None:intergenic
TGGTGGTAACAAAGAAACAT+AGG 0.561874 2.1:-24237778 None:intergenic
TCCCCGGTGATTGTGGTTGG+GGG 0.566819 2.1:+24238332 MS.gene070732:CDS
GAGGTGATCCAGTGAGGGCG+AGG 0.575976 2.1:-24239897 None:intergenic
ATAGTGATGCCTATCGGCAT+AGG 0.577307 2.1:+24239795 MS.gene070732:CDS
GAGATCCATATAGTAGTGGC+GGG 0.578946 2.1:+24240079 MS.gene070732:CDS
CCAAGGCGCCGATGGCAACG+TGG 0.583809 2.1:-24239002 None:intergenic
ACATCATGGTAAGCACTCGC+TGG 0.583888 2.1:-24239063 None:intergenic
CCGTGGAAGTGTCAGGGAGT+TGG 0.584077 2.1:-24237801 None:intergenic
TATCTGATAGATAGTTGAAG+TGG 0.586248 2.1:-24237925 None:intergenic
GAACTTCTGCGTAATCAGCA+AGG 0.588716 2.1:-24238274 None:intergenic
CAACTCATAAGGCTGTTCCA+AGG 0.589093 2.1:-24239422 None:intergenic
CAAGAATTTCCTATGCCGAT+AGG 0.596607 2.1:-24239804 None:intergenic
CATACCATTGACTGTAGGCA+GGG 0.598779 2.1:-24240260 None:intergenic
ACTGAGGATATCATCTCCAT+AGG 0.599988 2.1:-24239533 None:intergenic
ACTGAAATAGTGATGCCTAT+CGG 0.607219 2.1:+24239789 MS.gene070732:CDS
AACTTCTGCGTAATCAGCAA+GGG 0.607600 2.1:-24238273 None:intergenic
AGAGATCCATATAGTAGTGG+CGG 0.609335 2.1:+24240078 MS.gene070732:CDS
CCCAGTTACGACTATTTGTG+AGG 0.613777 2.1:+24239495 MS.gene070732:CDS
ACAAAAGTCCCCGGTGATTG+TGG 0.615008 2.1:+24238325 MS.gene070732:CDS
CCAACTCCCTGACACTTCCA+CGG 0.616998 2.1:+24237801 MS.gene070732:CDS
CTAAGAGATCCATATAGTAG+TGG 0.623616 2.1:+24240075 MS.gene070732:CDS
TTACCATGATGTTATTACAA+GGG 0.628091 2.1:+24239074 MS.gene070732:CDS
ATGTTATCAAAGTAGAGCAG+TGG 0.628222 2.1:-24239036 None:intergenic
ACTCAACCGTGGAAGTGTCA+GGG 0.633050 2.1:-24237807 None:intergenic
ATGGAGATGATATCCTCAGT+AGG 0.636437 2.1:+24239536 MS.gene070732:CDS
AGTAAGAGGTGATCCAGTGA+GGG 0.649906 2.1:-24239902 None:intergenic
ATATGCATACCATTGACTGT+AGG 0.653896 2.1:-24240265 None:intergenic
AAGGCGCCGATGGCAACGTG+GGG 0.656511 2.1:-24239000 None:intergenic
CAACTGAAAGTGATCCAGCA+TGG 0.662989 2.1:+24240536 MS.gene070732:CDS
ACTACATGAACAAAAGTCCC+CGG 0.665185 2.1:+24238316 MS.gene070732:CDS
TAGTAAGAGGTGATCCAGTG+AGG 0.666324 2.1:-24239903 None:intergenic
CTCACAAATAGTCGTAACTG+GGG 0.668632 2.1:-24239494 None:intergenic
AGCTCTACTAGTGTACATTG+AGG 0.685630 2.1:+24238096 MS.gene070732:CDS
GGGGAACATGTATCAAAAGG+CGG 0.688405 2.1:+24239456 MS.gene070732:CDS
TGGATCACCTCTTACTACGG+AGG 0.695905 2.1:+24239909 MS.gene070732:CDS
TCACAAATAGTCGTAACTGG+GGG 0.709536 2.1:-24239493 None:intergenic
TACCTGCATATATCCTACTG+AGG 0.720985 2.1:-24239549 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAGTTAATATATAATAT+GGG + chr2.1:24240620-24240639 MS.gene070732:intron 10.0%
!!! TTTTTTTTTGTTTGAAAAAT+AGG + chr2.1:24239353-24239372 MS.gene070732:intron 10.0%
!! AAAAAAAAGAAGGAAATATA+TGG - chr2.1:24239341-24239360 None:intergenic 15.0%
!! AAGATCAAGTAAATAATTAT+TGG + chr2.1:24239688-24239707 MS.gene070732:intron 15.0%
!! GATGAAGTTAATATATAATA+TGG + chr2.1:24240619-24240638 MS.gene070732:intron 15.0%
!! TGAAGTTAATATATAATATG+GGG + chr2.1:24240621-24240640 MS.gene070732:intron 15.0%
!!! ATATTGTAAATTTCAAGTAT+TGG + chr2.1:24237972-24237991 MS.gene070732:CDS 15.0%
!!! TATAAAAGGTATGTTTTAAA+AGG - chr2.1:24238515-24238534 None:intergenic 15.0%
!!! TATTGTAAATTTCAAGTATT+GGG + chr2.1:24237973-24237992 MS.gene070732:CDS 15.0%
!!! TTTGATTTATCAAATATGAA+TGG + chr2.1:24239162-24239181 MS.gene070732:intron 15.0%
!!! TTTTCAAACAAAAAAAAAGA+AGG - chr2.1:24239351-24239370 None:intergenic 15.0%
!! AATTTAATTAATTGGTATGC+AGG + chr2.1:24239190-24239209 MS.gene070732:intron 20.0%
!! ATCAAGTAAATAATTATTGG+AGG + chr2.1:24239691-24239710 MS.gene070732:intron 20.0%
!! ATTTATCAAATATGAATGGA+TGG + chr2.1:24239166-24239185 MS.gene070732:intron 20.0%
!! GAAGTTAATATATAATATGG+GGG + chr2.1:24240622-24240641 MS.gene070732:intron 20.0%
!! GGTATGCTTAAAATTATAAA+AGG - chr2.1:24238529-24238548 None:intergenic 20.0%
!! TACAATATATCTCTGTTTAA+AGG - chr2.1:24237960-24237979 None:intergenic 20.0%
!! TATAGAACCATTTGATTAAT+TGG - chr2.1:24240463-24240482 None:intergenic 20.0%
!! TCTTAGTACATATACTAAAA+AGG + chr2.1:24238794-24238813 MS.gene070732:intron 20.0%
!! TGGATGGTAATTTAATTAAT+TGG + chr2.1:24239182-24239201 MS.gene070732:intron 20.0%
!! TTGTAAACCAATTAATCAAA+TGG + chr2.1:24240453-24240472 MS.gene070732:intron 20.0%
!!! AAACTATATGGTGTATTTTT+CGG + chr2.1:24238692-24238711 MS.gene070732:intron 20.0%
!!! AATATTTTTTTATCCAGCTT+TGG - chr2.1:24240597-24240616 None:intergenic 20.0%
!!! ATATTAAATTGGTTCTTAAG+AGG + chr2.1:24240022-24240041 MS.gene070732:CDS 20.0%
!!! ATTGTAAATTTCAAGTATTG+GGG + chr2.1:24237974-24237993 MS.gene070732:CDS 20.0%
!!! GGAGGTTTTTTTATATTATT+TGG + chr2.1:24239709-24239728 MS.gene070732:intron 20.0%
!!! TACGTACTTTTATAATGTTT+AGG + chr2.1:24239937-24239956 MS.gene070732:intron 20.0%
!!! TCTTTTTTGTTTATTGTTGA+AGG + chr2.1:24240115-24240134 MS.gene070732:intron 20.0%
!!! TTTACAAATGTTGATTTTTC+AGG + chr2.1:24240487-24240506 MS.gene070732:intron 20.0%
! ACAATCTCTGTTTAATTGAA+TGG + chr2.1:24238638-24238657 MS.gene070732:intron 25.0%
! AGAAAGTGACATTGTTAATT+CGG + chr2.1:24238039-24238058 MS.gene070732:CDS 25.0%
! AGATGACACTACATATAATT+AGG - chr2.1:24238915-24238934 None:intergenic 25.0%
! CAATCTCTGTTTAATTGAAT+GGG + chr2.1:24238639-24238658 MS.gene070732:intron 25.0%
! GTTAATCCAGATAAATATAC+TGG + chr2.1:24239604-24239623 MS.gene070732:CDS 25.0%
! GTTCATAGAAATATGTATTC+AGG - chr2.1:24237895-24237914 None:intergenic 25.0%
! GTTTAAAAATAAGCTTCCTT+TGG + chr2.1:24240189-24240208 MS.gene070732:intron 25.0%
! TTACCATGATGTTATTACAA+GGG + chr2.1:24239074-24239093 MS.gene070732:CDS 25.0%
!! AAAAAAATATAGTTTGCGAC+AGG - chr2.1:24238764-24238783 None:intergenic 25.0%
!! AAAAAATATAGTTTGCGACA+GGG - chr2.1:24238763-24238782 None:intergenic 25.0%
!! TATGAGTTGAAAAACTACTT+GGG + chr2.1:24239436-24239455 MS.gene070732:CDS 25.0%
!! TTATGAGTTGAAAAACTACT+TGG + chr2.1:24239435-24239454 MS.gene070732:CDS 25.0%
!!! AAAACAAAGTCTTATTGTGT+TGG + chr2.1:24238881-24238900 MS.gene070732:intron 25.0%
!!! AAGTAGTTTTTCAACTCATA+AGG - chr2.1:24239436-24239455 None:intergenic 25.0%
!!! ATACACCATATAGTTTTACT+TGG - chr2.1:24238688-24238707 None:intergenic 25.0%
!!! TAGTAGAGCTTTAAAAGAAT+TGG - chr2.1:24238086-24238105 None:intergenic 25.0%
!!! TTTAATTTTCTTGTTAGCAC+CGG + chr2.1:24238192-24238211 MS.gene070732:intron 25.0%
!!! TTTGGCTTTTATATACTTCA+GGG + chr2.1:24240207-24240226 MS.gene070732:intron 25.0%
!!! TTTGTTAAGTTTTGGAAAGA+TGG + chr2.1:24240650-24240669 MS.gene070732:intron 25.0%
AATCCCTTGTAATAACATCA+TGG - chr2.1:24239080-24239099 None:intergenic 30.0%
ACGAATCTATACGAAATTCT+TGG + chr2.1:24239231-24239250 MS.gene070732:CDS 30.0%
AGAAGTTCTGCTATATTTGA+AGG + chr2.1:24238289-24238308 MS.gene070732:CDS 30.0%
CAGGTCTTCAATTAAATCTA+AGG - chr2.1:24237876-24237895 None:intergenic 30.0%
CTAATGGCAGGATATTAAAT+TGG + chr2.1:24240011-24240030 MS.gene070732:intron 30.0%
CTGAAGTATATAAAAGCCAA+AGG - chr2.1:24240208-24240227 None:intergenic 30.0%
CTTACCATGATGTTATTACA+AGG + chr2.1:24239073-24239092 MS.gene070732:CDS 30.0%
GTTGAATTTCTTGCTTAGAA+AGG - chr2.1:24239297-24239316 None:intergenic 30.0%
TATCTGATAGATAGTTGAAG+TGG - chr2.1:24237928-24237947 None:intergenic 30.0%
TATGAAGCAGAAACTTTCTT+TGG - chr2.1:24238550-24238569 None:intergenic 30.0%
TTGAAAAAGCAGAAAAACGA+TGG - chr2.1:24238415-24238434 None:intergenic 30.0%
TTTGCACCAGTATATTTATC+TGG - chr2.1:24239613-24239632 None:intergenic 30.0%
! AGCAACATCATTTTCTCAAA+TGG + chr2.1:24240051-24240070 MS.gene070732:CDS 30.0%
! ATGAGTTGAAAAACTACTTG+GGG + chr2.1:24239437-24239456 MS.gene070732:CDS 30.0%
! GTAGTTTTCCATTGTGAAAA+TGG - chr2.1:24237833-24237852 None:intergenic 30.0%
!! AATAACTATGCTGATTTACC+TGG - chr2.1:24239104-24239123 None:intergenic 30.0%
!! AATCTAAGGTTTTAGCGTTT+TGG - chr2.1:24237862-24237881 None:intergenic 30.0%
!!! CTTTGGCTTTTATATACTTC+AGG + chr2.1:24240206-24240225 MS.gene070732:intron 30.0%
!!! TAATTCGGTTGGTTTTATGA+CGG + chr2.1:24238054-24238073 MS.gene070732:CDS 30.0%
AATTGCATCGTTGTGACTAA+TGG + chr2.1:24239995-24240014 MS.gene070732:intron 35.0%
ACTGAAATAGTGATGCCTAT+CGG + chr2.1:24239789-24239808 MS.gene070732:CDS 35.0%
AGTGACATTGTTAATTCGGT+TGG + chr2.1:24238043-24238062 MS.gene070732:CDS 35.0%
AGTTCAACAAAGGAATACAG+AGG + chr2.1:24240561-24240580 MS.gene070732:intron 35.0%
ATAGCCGTAAGATGTGTTAA+AGG - chr2.1:24238237-24238256 None:intergenic 35.0%
ATGTTATCAAAGTAGAGCAG+TGG - chr2.1:24239039-24239058 None:intergenic 35.0%
CACTACTATATGGATCTCTT+AGG - chr2.1:24240077-24240096 None:intergenic 35.0%
CAGGGTTCTCAACAATATAT+CGG + chr2.1:24240225-24240244 MS.gene070732:intron 35.0%
CCACCCAAATAAGCAAATAT+GGG - chr2.1:24238019-24238038 None:intergenic 35.0%
CTAAGAGATCCATATAGTAG+TGG + chr2.1:24240075-24240094 MS.gene070732:CDS 35.0%
CTTAGAAAGGAAAGACCATT+TGG - chr2.1:24239284-24239303 None:intergenic 35.0%
GCTATCATCAATGTGATGAT+TGG - chr2.1:24238734-24238753 None:intergenic 35.0%
GCTCCCATATTTGCTTATTT+GGG + chr2.1:24238013-24238032 MS.gene070732:CDS 35.0%
GTGCACCAAGTAAAACTATA+TGG + chr2.1:24238680-24238699 MS.gene070732:intron 35.0%
TAGCCGTAAGATGTGTTAAA+GGG - chr2.1:24238236-24238255 None:intergenic 35.0%
TCCACCCAAATAAGCAAATA+TGG - chr2.1:24238020-24238039 None:intergenic 35.0%
TGATGATTGGCAGATTATTG+AGG - chr2.1:24238721-24238740 None:intergenic 35.0%
TGCTCCCATATTTGCTTATT+TGG + chr2.1:24238012-24238031 MS.gene070732:CDS 35.0%
TGTTATTACAAGGGATTTCC+AGG + chr2.1:24239083-24239102 MS.gene070732:CDS 35.0%
! ATATGCATACCATTGACTGT+AGG - chr2.1:24240268-24240287 None:intergenic 35.0%
! GAACAGTGTCAGAAAGATTT+TGG + chr2.1:24239867-24239886 MS.gene070732:CDS 35.0%
! GGATATCTTTTGTCAAGACT+TGG + chr2.1:24238815-24238834 MS.gene070732:intron 35.0%
!! GGGATGTGTTTGTTAAGTTT+TGG + chr2.1:24240642-24240661 MS.gene070732:intron 35.0%
!! GTAAATTTCAAGTATTGGGG+TGG + chr2.1:24237977-24237996 MS.gene070732:CDS 35.0%
!!! TTTTTCAGGATATCATTGCC+AGG + chr2.1:24240501-24240520 MS.gene070732:intron 35.0%
AACTCATAAGGCTGTTCCAA+GGG - chr2.1:24239424-24239443 None:intergenic 40.0%
AACTTCTGCGTAATCAGCAA+GGG - chr2.1:24238276-24238295 None:intergenic 40.0%
ACTACATGAACAAAAGTCCC+CGG + chr2.1:24238316-24238335 MS.gene070732:CDS 40.0%
ACTGAGGATATCATCTCCAT+AGG - chr2.1:24239536-24239555 None:intergenic 40.0%
AGAGATCCATATAGTAGTGG+CGG + chr2.1:24240078-24240097 MS.gene070732:CDS 40.0%
AGATTCGTAGCATGTCTTAC+TGG - chr2.1:24239219-24239238 None:intergenic 40.0%
AGCTCTACTAGTGTACATTG+AGG + chr2.1:24238096-24238115 MS.gene070732:CDS 40.0%
AGGTTGAGATAATCCAAAGC+TGG + chr2.1:24240581-24240600 MS.gene070732:intron 40.0%
ATATATGCAGGTATGGTTGC+TGG + chr2.1:24239559-24239578 MS.gene070732:CDS 40.0%
ATCCTCAGTAGGATATATGC+AGG + chr2.1:24239547-24239566 MS.gene070732:CDS 40.0%
ATGGAGATGATATCCTCAGT+AGG + chr2.1:24239536-24239555 MS.gene070732:CDS 40.0%
CAAGAATTTCCTATGCCGAT+AGG - chr2.1:24239807-24239826 None:intergenic 40.0%
CAGTAGGATATATGCAGGTA+TGG + chr2.1:24239552-24239571 MS.gene070732:CDS 40.0%
CCCATATTTGCTTATTTGGG+TGG + chr2.1:24238016-24238035 MS.gene070732:CDS 40.0%
CCTCACAAATAGTCGTAACT+GGG - chr2.1:24239498-24239517 None:intergenic 40.0%
CTCACAAATAGTCGTAACTG+GGG - chr2.1:24239497-24239516 None:intergenic 40.0%
CTTGGGGAACATGTATCAAA+AGG + chr2.1:24239453-24239472 MS.gene070732:CDS 40.0%
CTTTGTTGAACTAACCATGC+TGG - chr2.1:24240553-24240572 None:intergenic 40.0%
GAAGTAGCATCTAAGCCAAA+TGG + chr2.1:24239266-24239285 MS.gene070732:CDS 40.0%
GTGCCCTTTAACACATCTTA+CGG + chr2.1:24238230-24238249 MS.gene070732:CDS 40.0%
TACCTGCATATATCCTACTG+AGG - chr2.1:24239552-24239571 None:intergenic 40.0%
TCACAAATAGTCGTAACTGG+GGG - chr2.1:24239496-24239515 None:intergenic 40.0%
! CAGCATGGTTAGTTCAACAA+AGG + chr2.1:24240551-24240570 MS.gene070732:intron 40.0%
! GGTTGAGTCCATTTTCACAA+TGG + chr2.1:24237822-24237841 MS.gene070732:intron 40.0%
AGCCATTTGATGCTTGGAGA+TGG + chr2.1:24239632-24239651 MS.gene070732:CDS 45.0%
AGTAAGAGGTGATCCAGTGA+GGG - chr2.1:24239905-24239924 None:intergenic 45.0%
ATAGTGATGCCTATCGGCAT+AGG + chr2.1:24239795-24239814 MS.gene070732:CDS 45.0%
ATTTGATGCTTGGAGATGGC+AGG + chr2.1:24239636-24239655 MS.gene070732:CDS 45.0%
CAACTCATAAGGCTGTTCCA+AGG - chr2.1:24239425-24239444 None:intergenic 45.0%
CAACTGAAAGTGATCCAGCA+TGG + chr2.1:24240536-24240555 MS.gene070732:CDS 45.0%
CACTGGATCACCTCTTACTA+CGG + chr2.1:24239906-24239925 MS.gene070732:CDS 45.0%
CCCAGTTACGACTATTTGTG+AGG + chr2.1:24239495-24239514 MS.gene070732:CDS 45.0%
CTCGTGAAGTTGAAAGGTTG+AGG - chr2.1:24239840-24239859 None:intergenic 45.0%
GAACTTCTGCGTAATCAGCA+AGG - chr2.1:24238277-24238296 None:intergenic 45.0%
GAGATCCATATAGTAGTGGC+GGG + chr2.1:24240079-24240098 MS.gene070732:CDS 45.0%
GCATAGCTCGTGAAGTTGAA+AGG - chr2.1:24239846-24239865 None:intergenic 45.0%
GCCTCACAAATAGTCGTAAC+TGG - chr2.1:24239499-24239518 None:intergenic 45.0%
GGGGAACATGTATCAAAAGG+CGG + chr2.1:24239456-24239475 MS.gene070732:CDS 45.0%
GTGCAAAGCCATTTGATGCT+TGG + chr2.1:24239626-24239645 MS.gene070732:CDS 45.0%
GTTTACCCGCCACTACTATA+TGG - chr2.1:24240087-24240106 None:intergenic 45.0%
TACTTGACCTCCGTAGTAAG+AGG - chr2.1:24239919-24239938 None:intergenic 45.0%
TAGTAAGAGGTGATCCAGTG+AGG - chr2.1:24239906-24239925 None:intergenic 45.0%
TGCCATCTCCAAGCATCAAA+TGG - chr2.1:24239637-24239656 None:intergenic 45.0%
! CATACCATTGACTGTAGGCA+GGG - chr2.1:24240263-24240282 None:intergenic 45.0%
! TGTGAAAATGGACTCAACCG+TGG - chr2.1:24237821-24237840 None:intergenic 45.0%
!! TCTTGTTAGCACCGGTACTA+CGG + chr2.1:24238200-24238219 MS.gene070732:intron 45.0%
!! AAATATAATTTAAATATAAC+AGG - chr2.1:24238454-24238473 None:intergenic 5.0%
AAGTATCCCCACGTTGCCAT+CGG + chr2.1:24238994-24239013 MS.gene070732:CDS 50.0%
ACAAAAGTCCCCGGTGATTG+TGG + chr2.1:24238325-24238344 MS.gene070732:CDS 50.0%
ACATCATGGTAAGCACTCGC+TGG - chr2.1:24239066-24239085 None:intergenic 50.0%
GCATCGTTGTGACTAATGGC+AGG + chr2.1:24239999-24240018 MS.gene070732:intron 50.0%
GCTGGATCACTTTCAGTTGC+AGG - chr2.1:24240535-24240554 None:intergenic 50.0%
TCCATAGGCAGCTCGATCAA+TGG - chr2.1:24239521-24239540 None:intergenic 50.0%
TGGATCACCTCTTACTACGG+AGG + chr2.1:24239909-24239928 MS.gene070732:CDS 50.0%
! ATTATGCAGCGCTTGCTGCA+TGG + chr2.1:24238962-24238981 MS.gene070732:intron 50.0%
! GCATACCATTGACTGTAGGC+AGG - chr2.1:24240264-24240283 None:intergenic 50.0%
!! ACTCAACCGTGGAAGTGTCA+GGG - chr2.1:24237810-24237829 None:intergenic 50.0%
!! CTTGTTAGCACCGGTACTAC+GGG + chr2.1:24238201-24238220 MS.gene070732:intron 50.0%
AAGTCCCCGGTGATTGTGGT+TGG + chr2.1:24238329-24238348 MS.gene070732:CDS 55.0%
AGTCCCCGGTGATTGTGGTT+GGG + chr2.1:24238330-24238349 MS.gene070732:CDS 55.0%
ATCCCCCAACCACAATCACC+GGG - chr2.1:24238337-24238356 None:intergenic 55.0%
CAGTGGAGCTGATGAAGCCA+AGG - chr2.1:24239022-24239041 None:intergenic 55.0%
CAGTTGCAGGCACAAGATCC+TGG - chr2.1:24240522-24240541 None:intergenic 55.0%
CCAACTCCCTGACACTTCCA+CGG + chr2.1:24237801-24237820 MS.gene070732:CDS 55.0%
CTGTTCCAAGGGACTGCAAG+AGG - chr2.1:24239413-24239432 None:intergenic 55.0%
GATCCCCCAACCACAATCAC+CGG - chr2.1:24238338-24238357 None:intergenic 55.0%
GCCATTGATCGAGCTGCCTA+TGG + chr2.1:24239517-24239536 MS.gene070732:CDS 55.0%
GTTGCCCTGCCTACAGTCAA+TGG + chr2.1:24240256-24240275 MS.gene070732:CDS 55.0%
TTCCAAGGGACTGCAAGAGG+TGG - chr2.1:24239410-24239429 None:intergenic 55.0%
! CAGCGCTTGCTGCATGGTTT+CGG + chr2.1:24238968-24238987 MS.gene070732:intron 55.0%
! GCAGGTATGGTTGCTGGCTA+TGG + chr2.1:24239565-24239584 MS.gene070732:CDS 55.0%
!! AAGTGTCAGGGAGTTGGTGG+TGG - chr2.1:24237798-24237817 None:intergenic 55.0%
!! GACTCAACCGTGGAAGTGTC+AGG - chr2.1:24237811-24237830 None:intergenic 55.0%
!! GCACTGACTTCCCGTAGTAC+CGG - chr2.1:24238214-24238233 None:intergenic 55.0%
!! TGGAAGTGTCAGGGAGTTGG+TGG - chr2.1:24237801-24237820 None:intergenic 55.0%
GTCCCCGGTGATTGTGGTTG+GGG + chr2.1:24238331-24238350 MS.gene070732:CDS 60.0%
GTGGTTGGGGGATCATACGC+TGG + chr2.1:24238344-24238363 MS.gene070732:CDS 60.0%
TCCCCCAACCACAATCACCG+GGG - chr2.1:24238336-24238355 None:intergenic 60.0%
TCCCCGGTGATTGTGGTTGG+GGG + chr2.1:24238332-24238351 MS.gene070732:CDS 60.0%
TGATCCAGTGAGGGCGAGGT+TGG - chr2.1:24239896-24239915 None:intergenic 60.0%
TGCCACCTCTTGCAGTCCCT+TGG + chr2.1:24239405-24239424 MS.gene070732:intron 60.0%
!! CCGTGGAAGTGTCAGGGAGT+TGG - chr2.1:24237804-24237823 None:intergenic 60.0%
!! TGATGAAGCCAAGGCGCCGA+TGG - chr2.1:24239013-24239032 None:intergenic 60.0%
GAGGTGATCCAGTGAGGGCG+AGG - chr2.1:24239900-24239919 None:intergenic 65.0%
GTGTCCAACCTCGCCCTCAC+TGG + chr2.1:24239889-24239908 MS.gene070732:CDS 65.0%
!! AAGGCGCCGATGGCAACGTG+GGG - chr2.1:24239003-24239022 None:intergenic 65.0%
!! CAAGGCGCCGATGGCAACGT+GGG - chr2.1:24239004-24239023 None:intergenic 65.0%
CCACGTTGCCATCGGCGCCT+TGG + chr2.1:24239002-24239021 MS.gene070732:CDS 70.0%
!! CCAAGGCGCCGATGGCAACG+TGG - chr2.1:24239005-24239024 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 24237781 24240683 24237781 ID=MS.gene070732
chr2.1 mRNA 24237781 24240683 24237781 ID=MS.gene070732.t1;Parent=MS.gene070732
chr2.1 exon 24237781 24237822 24237781 ID=MS.gene070732.t1.exon1;Parent=MS.gene070732.t1
chr2.1 CDS 24237781 24237822 24237781 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
chr2.1 exon 24237917 24238117 24237917 ID=MS.gene070732.t1.exon2;Parent=MS.gene070732.t1
chr2.1 CDS 24237917 24238117 24237917 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
chr2.1 exon 24238209 24238368 24238209 ID=MS.gene070732.t1.exon3;Parent=MS.gene070732.t1
chr2.1 CDS 24238209 24238368 24238209 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
chr2.1 exon 24238971 24239104 24238971 ID=MS.gene070732.t1.exon4;Parent=MS.gene070732.t1
chr2.1 CDS 24238971 24239104 24238971 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
chr2.1 exon 24239212 24239324 24239212 ID=MS.gene070732.t1.exon5;Parent=MS.gene070732.t1
chr2.1 CDS 24239212 24239324 24239212 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
chr2.1 exon 24239420 24239657 24239420 ID=MS.gene070732.t1.exon6;Parent=MS.gene070732.t1
chr2.1 CDS 24239420 24239657 24239420 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
chr2.1 exon 24239783 24239935 24239783 ID=MS.gene070732.t1.exon7;Parent=MS.gene070732.t1
chr2.1 CDS 24239783 24239935 24239783 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
chr2.1 exon 24240021 24240100 24240021 ID=MS.gene070732.t1.exon8;Parent=MS.gene070732.t1
chr2.1 CDS 24240021 24240100 24240021 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
chr2.1 exon 24240228 24240277 24240228 ID=MS.gene070732.t1.exon9;Parent=MS.gene070732.t1
chr2.1 CDS 24240228 24240277 24240228 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
chr2.1 exon 24240509 24240557 24240509 ID=MS.gene070732.t1.exon10;Parent=MS.gene070732.t1
chr2.1 CDS 24240509 24240557 24240509 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
chr2.1 exon 24240659 24240683 24240659 ID=MS.gene070732.t1.exon11;Parent=MS.gene070732.t1
chr2.1 CDS 24240659 24240683 24240659 ID=cds.MS.gene070732.t1;Parent=MS.gene070732.t1
Gene Sequence

>MS.gene070732

ATGTTTCTTTGTTACCACCACCAACTCCCTGACACTTCCACGGTTGAGTCCATTTTCACAATGGAAAACTACTAAGTACCAAAACGCTAAAACCTTAGATTTAATTGAAGACCTGAATACATATTTCTATGAACAGACTTTAGACCACTTCAACTATCTATCAGATAGCTACAAAACCTTTAAACAGAGATATATTGTAAATTTCAAGTATTGGGGTGGTGCTAATTCTAGTGCTCCCATATTTGCTTATTTGGGTGGAGAAAGTGACATTGTTAATTCGGTTGGTTTTATGACGGATAATGCCAATTCTTTTAAAGCTCTACTAGTGTACATTGAGGTACTAAATAGAAAACTATTTCTTTTGATACTCATTGATCTAAATAAAATTAGTTTTACGATTCTGATAAAACTTTTAATTTTCTTGTTAGCACCGGTACTACGGGAAGTCAGTGCCCTTTAACACATCTTACGGCTATTTAAACTCAGCACAAGCCCTTGCTGATTACGCAGAAGTTCTGCTATATTTGAAGGATGCACTACATGAACAAAAGTCCCCGGTGATTGTGGTTGGGGGATCATACGCTGGAAGTTAGTTTTTTAAATTATTTTTCTGTTTTTCTTCACTTTTTTACCATCGTTTTTCTGCTTTTTCAATTTTTTTCTACTTACTCCTGTTATATTTAAATTATATTTTTAAAATTTTAAACTTGCAATTACAATACTCATTGAAACCTTTTAAAACATACCTTTTATAATTTTAAGCATACCAAAGAAAGTTTCTGCTTCATATAAAAGTTTCAGAGTATTAGTTACATATGTATGAAGTCTTAAAATCAATTACTTCTAAGCTTAAACAAACAATCTCTGTTTAATTGAATGGGAAAATTTCTCATTGTAAAGTGCACCAAGTAAAACTATATGGTGTATTTTTCGGTGACCTCAATAATCTGCCAATCATCACATTGATGATAGCTGAAATCCCTGTCGCAAACTATATTTTTTTTCAAGATTACTCTTAGTACATATACTAAAAAGGATATCTTTTGTCAAGACTTGGTAAGTATTAGTACTATACAACTCTAGAAAAACATAATCATACAAAAACAAAGTCTTATTGTGTTGGTCATATGACCTAATTATATGTAGTGTCATCTTTTAATTAATGTCACATGTATTTGTTAATTATGCAGCGCTTGCTGCATGGTTTCGGCTTAAGTATCCCCACGTTGCCATCGGCGCCTTGGCTTCATCAGCTCCACTGCTCTACTTTGATAACATCACACCAGCGAGTGCTTACCATGATGTTATTACAAGGGATTTCCAGGTAAATCAGCATAGTTATTTTTTATCTTTTATGTTTGTTGATTAATATATATTTATTTTTGATTTATCAAATATGAATGGATGGTAATTTAATTAATTGGTATGCAGGAAACCAGTAAGACATGCTACGAATCTATACGAAATTCTTGGTTTGAAATTGATGAAGTAGCATCTAAGCCAAATGGTCTTTCCTTTCTAAGCAAGAAATTCAACACTTGCTAGTAAGCACTGTTTCCATATATTTCCTTCTTTTTTTTTGTTTGAAAAATAGGATCAAGTTCTGACTTGAACTTGTTCAAATTGCCACCTCTTGCAGTCCCTTGGAACAGCCTTATGAGTTGAAAAACTACTTGGGGAACATGTATCAAAAGGCGGCACAATACAATGATCCCCCAGTTACGACTATTTGTGAGGCCATTGATCGAGCTGCCTATGGAGATGATATCCTCAGTAGGATATATGCAGGTATGGTTGCTGGCTATGGCAACAAAAAATGCAATGTTAATCCAGATAAATATACTGGTGCAAAGCCATTTGATGCTTGGAGATGGCAGGTAGTCACATTGAAATTTGAGTAATTGTATAAGATCAAGTAAATAATTATTGGAGGTTTTTTTATATTATTTGGTGCACATATTTCGTTGTTCTAAAAAAATTATGAATTATTTTATACATTCAGACGTGCACTGAAATAGTGATGCCTATCGGCATAGGAAATTCTTGCTTGCTTCAACCTCAACCTTTCAACTTCACGAGCTATGCTGAACAGTGTCAGAAAGATTTTGGTGTCCAACCTCGCCCTCACTGGATCACCTCTTACTACGGAGGTCAAGTACGTACTTTTATAATGTTTAGGTTTCAATATTAATATTACATTATCAATAGAAAATTAATTGCATCGTTGTGACTAATGGCAGGATATTAAATTGGTTCTTAAGAGGTTTGCGAGCAACATCATTTTCTCAAATGGCCTAAGAGATCCATATAGTAGTGGCGGGTAAACATGCAAAATCTTTTTTGTTTATTGTTGAAGGAAAACATGCAAAATCTAAAATTTAAATTCATCTTAATTATTTTAGAACAATGTTTAAAAATAAGCTTCCTTTGGCTTTTATATACTTCAGGGTTCTCAACAATATATCGGATAGTCTTGTTGCCCTGCCTACAGTCAATGGTATGCATATCTTACTTTTTTTGAAATATGTATGTCTTGTATTGTGTGAATACATACTATTTCGTTGTCTAATTATATTATATTACGCACATTTAGATATAAGTATATAGAGAATACATTCTAGTAGTAGTAGTAGTAAGAGTACGTTGCTAACTTTTTATCATTTTATAAAAAATTGTAAACCAATTAATCAAATGGTTCTATAATGTTTTACAAATGTTGATTTTTCAGGATATCATTGCCAGGATCTTGTGCCTGCAACTGAAAGTGATCCAGCATGGTTAGTTCAACAAAGGAATACAGAGGTTGAGATAATCCAAAGCTGGATAAAAAAATATTATGATGAAGTTAATATATAATATGGGGGATGTGTTTGTTAAGTTTTGGAAAGATGGCACTTAAATAA

Protein sequence

>MS.gene070732.t1

MFLCYHHQLPDTSTTLDHFNYLSDSYKTFKQRYIVNFKYWGGANSSAPIFAYLGGESDIVNSVGFMTDNANSFKALLVYIEHRYYGKSVPFNTSYGYLNSAQALADYAEVLLYLKDALHEQKSPVIVVGGSYAGTLAAWFRLKYPHVAIGALASSAPLLYFDNITPASAYHDVITRDFQETSKTCYESIRNSWFEIDEVASKPNGLSFLSKKFNTCYPLEQPYELKNYLGNMYQKAAQYNDPPVTTICEAIDRAAYGDDILSRIYAGMVAGYGNKKCNVNPDKYTGAKPFDAWRWQTCTEIVMPIGIGNSCLLQPQPFNFTSYAEQCQKDFGVQPRPHWITSYYGGQDIKLVLKRFASNIIFSNGLRDPYSSGGVLNNISDSLVALPTVNGYHCQDLVPATESDPACFGKMALK