Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07077.t1 | XP_003625997.2 | 98.3 | 408 | 7 | 0 | 1 | 408 | 91 | 498 | 1.80E-238 | 834.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07077.t1 | O22898 | 69.9 | 408 | 123 | 0 | 1 | 408 | 91 | 498 | 1.4e-175 | 617.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07077.t1 | G7KTN5 | 98.3 | 408 | 7 | 0 | 1 | 408 | 91 | 498 | 1.3e-238 | 834.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050418 | MS.gene07077 | 0.996589 | 1.66E-229 | -1.69E-46 |
| MS.gene050419 | MS.gene07077 | 0.975556 | 3.61E-140 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTATTTTTGTTAAAA+GGG | - | 51376:52391-52410 | MS.gene07077:CDS | 10.0% |
| !!! | TCTTTTTTATTTTTGTTAAA+AGG | - | 51376:52390-52409 | MS.gene07077:CDS | 10.0% |
| !! | AAGACAATAATAAATATATC+TGG | + | 51376:54050-54069 | None:intergenic | 15.0% |
| !! | ATTGTGTAATTTCAATTATA+GGG | - | 51376:52430-52449 | MS.gene07077:CDS | 15.0% |
| !! | CTTCAAAATAAAGATATATT+TGG | - | 51376:55280-55299 | MS.gene07077:intron | 15.0% |
| !! | TATTGTGTAATTTCAATTAT+AGG | - | 51376:52429-52448 | MS.gene07077:CDS | 15.0% |
| !!! | AAAACATTACTTATTTTGTT+AGG | - | 51376:53915-53934 | MS.gene07077:intron | 15.0% |
| !!! | AAACATTACTTATTTTGTTA+GGG | - | 51376:53916-53935 | MS.gene07077:intron | 15.0% |
| !!! | TAAAACAAATAAATTTTGTG+CGG | + | 51376:54497-54516 | None:intergenic | 15.0% |
| !!! | TTTTAACTTTTAGCAAATTT+TGG | - | 51376:54654-54673 | MS.gene07077:intron | 15.0% |
| !! | AAAGTAAACAAACTATATTG+AGG | + | 51376:54334-54353 | None:intergenic | 20.0% |
| !! | AAGTAAACAAACTATATTGA+GGG | + | 51376:54333-54352 | None:intergenic | 20.0% |
| !! | AATTCATATACCACATTTAA+AGG | - | 51376:53403-53422 | MS.gene07077:intron | 20.0% |
| !! | AGTTTACTGCATAAAAATAT+AGG | + | 51376:54753-54772 | None:intergenic | 20.0% |
| !! | ATGTAGTTAAAAGAATATCA+TGG | + | 51376:53177-53196 | None:intergenic | 20.0% |
| !! | GTTCTACATTAAAAAAAGTA+AGG | + | 51376:53142-53161 | None:intergenic | 20.0% |
| !! | TCTATTATTACAATACATCA+TGG | - | 51376:55084-55103 | MS.gene07077:intron | 20.0% |
| !!! | AACATTACTTATTTTGTTAG+GGG | - | 51376:53917-53936 | MS.gene07077:intron | 20.0% |
| !!! | ATATTTTTATGCAGTAAACT+TGG | - | 51376:54753-54772 | MS.gene07077:intron | 20.0% |
| !!! | CAGAAATATTTTCATTCATT+TGG | - | 51376:54270-54289 | MS.gene07077:intron | 20.0% |
| !!! | CATTTAAGATTATATCTTTC+AGG | - | 51376:54537-54556 | MS.gene07077:CDS | 20.0% |
| !!! | GTTTTATCTTATAAGAATTG+TGG | + | 51376:55200-55219 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTTTATTTAGTGA+CGG | + | 51376:52970-52989 | None:intergenic | 20.0% |
| !!! | TTAACTTTATTTTCTTTGTG+TGG | - | 51376:53583-53602 | MS.gene07077:CDS | 20.0% |
| !!! | TTTTAGATGACATAAGTAAT+TGG | + | 51376:52934-52953 | None:intergenic | 20.0% |
| ! | AATGGTTAGTGCATAATATA+AGG | - | 51376:53703-53722 | MS.gene07077:intron | 25.0% |
| ! | ACACTATATATGGTTAATCT+AGG | - | 51376:55433-55452 | MS.gene07077:intron | 25.0% |
| ! | ACATAAGTAATTGGAGAAAT+TGG | + | 51376:52925-52944 | None:intergenic | 25.0% |
| ! | ACCAAAATCCATATAATTGT+CGG | + | 51376:54706-54725 | None:intergenic | 25.0% |
| ! | ACGTTCAATATAAAAACATG+AGG | + | 51376:53057-53076 | None:intergenic | 25.0% |
| ! | AGATAAATACACATCTTCAA+CGG | + | 51376:54153-54172 | None:intergenic | 25.0% |
| ! | CAATAGAGTAAAAACATAGA+AGG | + | 51376:52553-52572 | None:intergenic | 25.0% |
| ! | CAATTTAAACATCAAATGCA+GGG | - | 51376:53262-53281 | MS.gene07077:intron | 25.0% |
| ! | CATCATTCTCTATAATATCA+AGG | - | 51376:55149-55168 | MS.gene07077:intron | 25.0% |
| ! | GGACTTGAAAAAGTTTATAA+AGG | + | 51376:53121-53140 | None:intergenic | 25.0% |
| ! | GTATTATTATGTTACACAAC+TGG | + | 51376:53441-53460 | None:intergenic | 25.0% |
| ! | TAGGTAAAAGAAGTTAATAG+TGG | + | 51376:54880-54899 | None:intergenic | 25.0% |
| ! | TATGATAAAATTTACAGCAC+CGG | + | 51376:53289-53308 | None:intergenic | 25.0% |
| ! | TCAATTTAAACATCAAATGC+AGG | - | 51376:53261-53280 | MS.gene07077:intron | 25.0% |
| ! | TCCATAAATGAGTGAAAATA+CGG | - | 51376:52842-52861 | MS.gene07077:intron | 25.0% |
| ! | TCTGTATTTACCTTTAAATG+TGG | + | 51376:53416-53435 | None:intergenic | 25.0% |
| ! | TGATCTATTAGCATTTAGAA+AGG | - | 51376:54821-54840 | MS.gene07077:intron | 25.0% |
| !! | ATTTGGATTTTCTTGACAAA+AGG | - | 51376:54287-54306 | MS.gene07077:intron | 25.0% |
| !! | CTATTAACTTCTTTTACCTA+TGG | - | 51376:54880-54899 | MS.gene07077:intron | 25.0% |
| !! | TGAAGTACTTACACTATATA+TGG | - | 51376:55423-55442 | MS.gene07077:intron | 25.0% |
| !! | TTGAGATTGGTGAAATTTTA+GGG | + | 51376:54915-54934 | None:intergenic | 25.0% |
| !! | TTTGGATTTTCTTGACAAAA+GGG | - | 51376:54288-54307 | MS.gene07077:intron | 25.0% |
| !! | TTTTCACTCATTTATGGAAT+TGG | + | 51376:52840-52859 | None:intergenic | 25.0% |
| !!! | AAAATCGACTGATTTGATAA+TGG | - | 51376:52809-52828 | MS.gene07077:intron | 25.0% |
| !!! | CTTGCATAACTTTTTTATCT+TGG | + | 51376:53341-53360 | None:intergenic | 25.0% |
| !!! | GAGGAATATTTTTTCCATAA+GGG | - | 51376:54209-54228 | MS.gene07077:CDS | 25.0% |
| !!! | TGAGGAATATTTTTTCCATA+AGG | - | 51376:54208-54227 | MS.gene07077:CDS | 25.0% |
| !!! | TTTGAGATTGGTGAAATTTT+AGG | + | 51376:54916-54935 | None:intergenic | 25.0% |
| AGAGTAAAAACATAGAAGGA+AGG | + | 51376:52549-52568 | None:intergenic | 30.0% | |
| ATAAAAATATAGGTGTGCAG+TGG | + | 51376:54743-54762 | None:intergenic | 30.0% | |
| ATTTCGTTGTATACAGATAC+AGG | + | 51376:55529-55548 | None:intergenic | 30.0% | |
| CAATCTCAAATTTCTTTCCT+TGG | - | 51376:54926-54945 | MS.gene07077:intron | 30.0% | |
| CATAAATGAGTGAAAATACG+GGG | - | 51376:52844-52863 | MS.gene07077:intron | 30.0% | |
| CCATAAATGAGTGAAAATAC+GGG | - | 51376:52843-52862 | MS.gene07077:intron | 30.0% | |
| GAGGATGAAGTAAATATGTA+TGG | + | 51376:52676-52695 | None:intergenic | 30.0% | |
| GTATTTATCTTTCCTTCCTT+TGG | - | 51376:54163-54182 | MS.gene07077:CDS | 30.0% | |
| TGAGAACGTTATATAGAAGT+GGG | + | 51376:52514-52533 | None:intergenic | 30.0% | |
| TGCACAATAATGTATACTAG+TGG | - | 51376:53854-53873 | MS.gene07077:CDS | 30.0% | |
| TTGAAACTCATGTAGTAAAG+AGG | + | 51376:54855-54874 | None:intergenic | 30.0% | |
| ! | AAAACATGAGGTGTTAGAAT+CGG | + | 51376:53045-53064 | None:intergenic | 30.0% |
| ! | AAGCTTGTTTATGTTGATGT+AGG | - | 51376:52581-52600 | MS.gene07077:intron | 30.0% |
| ! | ACCGACAATTATATGGATTT+TGG | - | 51376:54702-54721 | MS.gene07077:CDS | 30.0% |
| ! | CAAGGAAAGAAATTTGAGAT+TGG | + | 51376:54928-54947 | None:intergenic | 30.0% |
| ! | TTTCTCTGTTTTGTGCAATT+AGG | - | 51376:52702-52721 | MS.gene07077:intron | 30.0% |
| ! | TTTTATGCAGTAAACTTGGT+TGG | - | 51376:54757-54776 | MS.gene07077:intron | 30.0% |
| !!! | TACTTATTTTGTTAGGGGAA+TGG | - | 51376:53922-53941 | MS.gene07077:intron | 30.0% |
| AAACTTGGTTGGATGAAGAA+AGG | - | 51376:54768-54787 | MS.gene07077:intron | 35.0% | |
| AAAGATAAAGCAACCAGCAT+TGG | - | 51376:53647-53666 | MS.gene07077:intron | 35.0% | |
| AAATCAGCTTCACGATTGAA+AGG | - | 51376:53495-53514 | MS.gene07077:intron | 35.0% | |
| AACAATACTCTTACGAGCAT+AGG | - | 51376:55217-55236 | MS.gene07077:intron | 35.0% | |
| AAGATAAAGCAACCAGCATT+GGG | - | 51376:53648-53667 | MS.gene07077:intron | 35.0% | |
| AATGCTAATAGATCAGCGAA+TGG | + | 51376:54816-54835 | None:intergenic | 35.0% | |
| AATTGTGGTTGTGCTAACAA+CGG | + | 51376:55185-55204 | None:intergenic | 35.0% | |
| ACAAAGGAATCCATAGTAGA+TGG | - | 51376:55664-55683 | MS.gene07077:intron | 35.0% | |
| ATGGATCAAATTGTCCTCAA+TGG | - | 51376:52470-52489 | MS.gene07077:CDS | 35.0% | |
| ATGGATTCCTTTGTTAACTC+AGG | + | 51376:55658-55677 | None:intergenic | 35.0% | |
| ATGTATACTAGTGGAACAAG+TGG | - | 51376:53863-53882 | MS.gene07077:CDS | 35.0% | |
| ATTTCTTTCCTTGGTGAGTT+AGG | - | 51376:54935-54954 | MS.gene07077:intron | 35.0% | |
| CAAAAACCCTGAGTTAACAA+AGG | - | 51376:55648-55667 | MS.gene07077:intron | 35.0% | |
| CATATATTATGAGCTTGTGG+TGG | + | 51376:53836-53855 | None:intergenic | 35.0% | |
| CATCTTACTACTACCTTGTA+GGG | - | 51376:53785-53804 | MS.gene07077:CDS | 35.0% | |
| CCAAAAACTGTTCTTCTAAC+TGG | + | 51376:54591-54610 | None:intergenic | 35.0% | |
| CGTGTTCGACTAATAATAAC+CGG | - | 51376:54978-54997 | MS.gene07077:intron | 35.0% | |
| GAGTCAAAACAACACCTTTA+GGG | + | 51376:53892-53911 | None:intergenic | 35.0% | |
| GTCTGAAAATGATCCTAGTT+GGG | - | 51376:52728-52747 | MS.gene07077:intron | 35.0% | |
| GTGAGAACGTTATATAGAAG+TGG | + | 51376:52515-52534 | None:intergenic | 35.0% | |
| GTGCATATATTATGAGCTTG+TGG | + | 51376:53839-53858 | None:intergenic | 35.0% | |
| TAGGTTTGACTGAAACTTGT+GGG | - | 51376:55452-55471 | MS.gene07077:intron | 35.0% | |
| TCATCTTACTACTACCTTGT+AGG | - | 51376:53784-53803 | MS.gene07077:CDS | 35.0% | |
| TCTGAAAATGATCCTAGTTG+GGG | - | 51376:52729-52748 | MS.gene07077:intron | 35.0% | |
| TCTTCAATCTCTGAACTCAA+CGG | + | 51376:55011-55030 | None:intergenic | 35.0% | |
| TGAGTCAAAACAACACCTTT+AGG | + | 51376:53893-53912 | None:intergenic | 35.0% | |
| TGCACAAAACAGAGAAAACA+GGG | + | 51376:52699-52718 | None:intergenic | 35.0% | |
| TGCATTGAGGGATGATTTAA+TGG | - | 51376:54400-54419 | MS.gene07077:CDS | 35.0% | |
| TGGATTCCTTTGTTAACTCA+GGG | + | 51376:55657-55676 | None:intergenic | 35.0% | |
| TGTGACAACCGACAATTATA+TGG | - | 51376:54695-54714 | MS.gene07077:CDS | 35.0% | |
| TTGAAAAGGTCTATGAAGGT+AGG | - | 51376:54462-54481 | MS.gene07077:intron | 35.0% | |
| TTGCACAAAACAGAGAAAAC+AGG | + | 51376:52700-52719 | None:intergenic | 35.0% | |
| TTTAGGGAAGGTTAATCCAT+AGG | + | 51376:54899-54918 | None:intergenic | 35.0% | |
| ! | AGACCTTTTCAAAGACTCTA+GGG | + | 51376:54454-54473 | None:intergenic | 35.0% |
| ! | CCAGTTAGAAGAACAGTTTT+TGG | - | 51376:54588-54607 | MS.gene07077:intron | 35.0% |
| ! | CCCGTATTTTCACTCATTTA+TGG | + | 51376:52846-52865 | None:intergenic | 35.0% |
| ! | GTCTTTGAAAAGGTCTATGA+AGG | - | 51376:54458-54477 | MS.gene07077:intron | 35.0% |
| ! | TAGACCTTTTCAAAGACTCT+AGG | + | 51376:54455-54474 | None:intergenic | 35.0% |
| ! | TAGGGGAATGGATATTTTCA+TGG | - | 51376:53934-53953 | MS.gene07077:intron | 35.0% |
| ! | TTGTTAACTCAGGGTTTTTG+TGG | + | 51376:55648-55667 | None:intergenic | 35.0% |
| !! | AAATTGTCCTCAATGGATTG+CGG | - | 51376:52477-52496 | MS.gene07077:CDS | 35.0% |
| !! | ATCGACTGATTTGATAATGG+AGG | - | 51376:52812-52831 | MS.gene07077:intron | 35.0% |
| !! | GATTGGTGAAATTTTAGGGA+AGG | + | 51376:54911-54930 | None:intergenic | 35.0% |
| !! | TCGACTGATTTGATAATGGA+GGG | - | 51376:52813-52832 | MS.gene07077:intron | 35.0% |
| !! | TTACCAAGAGTATCATAGAG+AGG | + | 51376:52636-52655 | None:intergenic | 35.0% |
| !! | TTTGAGTTGCTTGTGAATGA+AGG | - | 51376:54370-54389 | MS.gene07077:CDS | 35.0% |
| !! | TTTTTGGCATGCTCTACAAA+CGG | - | 51376:54604-54623 | MS.gene07077:intron | 35.0% |
| !!! | GAATTTTTGCGTGTTACTTC+TGG | - | 51376:55029-55048 | MS.gene07077:intron | 35.0% |
| AAGAACTCTTCCCAGGAATA+TGG | + | 51376:53680-53699 | None:intergenic | 40.0% | |
| ACTAGAAGAAGTTCCAGAGA+TGG | - | 51376:55552-55571 | MS.gene07077:CDS | 40.0% | |
| AGATAAAGCAACCAGCATTG+GGG | - | 51376:53649-53668 | MS.gene07077:intron | 40.0% | |
| AGGAATCCATAGTAGATGGA+TGG | - | 51376:55668-55687 | MS.gene07077:intron | 40.0% | |
| AGGTACACAAACCAAGCTAT+GGG | + | 51376:52616-52635 | None:intergenic | 40.0% | |
| ATAGACACAAACACGAGTAC+TGG | + | 51376:55390-55409 | None:intergenic | 40.0% | |
| ATTCCTCAATTGTCCGATCA+AGG | + | 51376:54196-54215 | None:intergenic | 40.0% | |
| CAATTATAGGGCTCACGAAT+TGG | - | 51376:52442-52461 | MS.gene07077:CDS | 40.0% | |
| CATGGAACAGTTTGAAGACA+AGG | - | 51376:53952-53971 | MS.gene07077:intron | 40.0% | |
| CATTTGTAAGAACTCTTCCC+AGG | + | 51376:53687-53706 | None:intergenic | 40.0% | |
| CGTCTGAAAATGATCCTAGT+TGG | - | 51376:52727-52746 | MS.gene07077:intron | 40.0% | |
| CTAGAAGAAGTTCCAGAGAT+GGG | - | 51376:55553-55572 | MS.gene07077:CDS | 40.0% | |
| CTAGGTTTGACTGAAACTTG+TGG | - | 51376:55451-55470 | MS.gene07077:intron | 40.0% | |
| CTGGGAAGAGTTCTTACAAA+TGG | - | 51376:53685-53704 | MS.gene07077:intron | 40.0% | |
| GAAGGATCTAACTGCATTGA+GGG | - | 51376:54388-54407 | MS.gene07077:CDS | 40.0% | |
| GCACAAAACAGAGAAAACAG+GGG | + | 51376:52698-52717 | None:intergenic | 40.0% | |
| GTACCTCTCTATGATACTCT+TGG | - | 51376:52630-52649 | MS.gene07077:intron | 40.0% | |
| GTGAAACCATCCATCTACTA+TGG | + | 51376:55677-55696 | None:intergenic | 40.0% | |
| GTTCGACTAATAATAACCGG+AGG | - | 51376:54981-55000 | MS.gene07077:intron | 40.0% | |
| TAAACATCAAATGCAGGGTC+CGG | - | 51376:53267-53286 | MS.gene07077:intron | 40.0% | |
| TATCCTTGATCGGACAATTG+AGG | - | 51376:54190-54209 | MS.gene07077:CDS | 40.0% | |
| TGAAACCAACACTGTTTGCT+GGG | - | 51376:54426-54445 | MS.gene07077:intron | 40.0% | |
| TGAAGGATCTAACTGCATTG+AGG | - | 51376:54387-54406 | MS.gene07077:CDS | 40.0% | |
| TGTATGTCAAGGCTATGGTA+AGG | - | 51376:55058-55077 | MS.gene07077:intron | 40.0% | |
| TTCAGGTATCAAGAAAGCAG+TGG | - | 51376:54554-54573 | MS.gene07077:intron | 40.0% | |
| TTGAAACCAACACTGTTTGC+TGG | - | 51376:54425-54444 | MS.gene07077:intron | 40.0% | |
| ! | AGAGGGAAATCAGTTTTCTC+CGG | - | 51376:55619-55638 | MS.gene07077:intron | 40.0% |
| ! | CGTGAAGCTGATTTACAATC+AGG | + | 51376:53489-53508 | None:intergenic | 40.0% |
| ! | CTTTGGCTCATATCCTTGAT+CGG | - | 51376:54180-54199 | MS.gene07077:CDS | 40.0% |
| ! | GCTTTTGTATGTCAAGGCTA+TGG | - | 51376:55053-55072 | MS.gene07077:intron | 40.0% |
| ! | TCTGGTGCTTTTGTATGTCA+AGG | - | 51376:55047-55066 | MS.gene07077:intron | 40.0% |
| ! | TGGAGTTTCTTTTCCCTACA+AGG | + | 51376:53801-53820 | None:intergenic | 40.0% |
| ! | TGGGGTCACTCTTCATATTT+TGG | - | 51376:52747-52766 | MS.gene07077:intron | 40.0% |
| !! | GAGAAATTGGTGTCAATGCT+AGG | + | 51376:52912-52931 | None:intergenic | 40.0% |
| AGACATATCTCGCCACATGA+AGG | + | 51376:55598-55617 | None:intergenic | 45.0% | |
| AGAGGATTGTAACCCATCTC+TGG | + | 51376:55568-55587 | None:intergenic | 45.0% | |
| AGTTAGGTCAAAGCTCGGTT+AGG | - | 51376:54951-54970 | MS.gene07077:intron | 45.0% | |
| ATATGGCTTAACCCCAATGC+TGG | + | 51376:53663-53682 | None:intergenic | 45.0% | |
| ATGTGCATGCTTGGTACTGT+TGG | - | 51376:55502-55521 | MS.gene07077:intron | 45.0% | |
| CAAAACAGAGAAAACAGGGG+AGG | + | 51376:52695-52714 | None:intergenic | 45.0% | |
| CAAGGATATGAGCCAAAGGA+AGG | + | 51376:54178-54197 | None:intergenic | 45.0% | |
| CCAAGCATGCACATTTCATC+AGG | + | 51376:55496-55515 | None:intergenic | 45.0% | |
| CCTGATGAAATGTGCATGCT+TGG | - | 51376:55493-55512 | MS.gene07077:intron | 45.0% | |
| CGATCAAGGATATGAGCCAA+AGG | + | 51376:54182-54201 | None:intergenic | 45.0% | |
| CTGCATGAACATATACCCCA+TGG | + | 51376:54253-54272 | None:intergenic | 45.0% | |
| GAGGTACACAAACCAAGCTA+TGG | + | 51376:52617-52636 | None:intergenic | 45.0% | |
| GGCTCACGAATTGGAGTTTA+TGG | - | 51376:52451-52470 | MS.gene07077:CDS | 45.0% | |
| GTAGATGGATGGTTTCACAC+AGG | - | 51376:55679-55698 | MS.gene07077:CDS | 45.0% | |
| GTGGCGAGATATGTCTTAGA+GGG | - | 51376:55602-55621 | MS.gene07077:intron | 45.0% | |
| TATGAAGAGTGACCCCAACT+AGG | + | 51376:52744-52763 | None:intergenic | 45.0% | |
| TGGGGTTAAGCCATATTCCT+GGG | - | 51376:53667-53686 | MS.gene07077:intron | 45.0% | |
| TGGTGAGTTAGGTCAAAGCT+CGG | - | 51376:54946-54965 | MS.gene07077:intron | 45.0% | |
| TGTGGCGAGATATGTCTTAG+AGG | - | 51376:55601-55620 | MS.gene07077:intron | 45.0% | |
| TTGGGGTTAAGCCATATTCC+TGG | - | 51376:53666-53685 | MS.gene07077:intron | 45.0% | |
| ! | AGCTTTGACCTAACTCACCA+AGG | + | 51376:54946-54965 | None:intergenic | 45.0% |
| ! | ATCTGTTGGCTACTACCATG+GGG | - | 51376:54235-54254 | MS.gene07077:intron | 45.0% |
| ! | ATGAGCTTGTGGTGGTGAAA+TGG | + | 51376:53828-53847 | None:intergenic | 45.0% |
| ! | CATCTGTTGGCTACTACCAT+GGG | - | 51376:54234-54253 | MS.gene07077:intron | 45.0% |
| ! | GAAACCAACACTGTTTGCTG+GGG | - | 51376:54427-54446 | MS.gene07077:intron | 45.0% |
| ! | GGTCCCTAGAGTCTTTGAAA+AGG | - | 51376:54448-54467 | MS.gene07077:intron | 45.0% |
| ! | TGTGGTGGTGAAATGGTTGA+TGG | + | 51376:53821-53840 | None:intergenic | 45.0% |
| ! | TTCCATAAGGGTGCATCTGT+TGG | - | 51376:54221-54240 | MS.gene07077:intron | 45.0% |
| !! | GAGATGGGTTACAATCCTCT+TGG | - | 51376:55568-55587 | MS.gene07077:intron | 45.0% |
| !! | TAAAAATAAAGAAAAATTTA+AGG | + | 51376:52882-52901 | None:intergenic | 5.0% |
| !!! | ATATTTTAAAATTATTAACA+CGG | - | 51376:55343-55362 | MS.gene07077:intron | 5.0% |
| !!! | ATTTTTAATTACTTATTTAT+CGG | - | 51376:53195-53214 | MS.gene07077:CDS | 5.0% |
| AGCCAACAGATGCACCCTTA+TGG | + | 51376:54226-54245 | None:intergenic | 50.0% | |
| CCACATGAAGGAGTTCCAAG+AGG | + | 51376:55586-55605 | None:intergenic | 50.0% | |
| CCTCTTGGAACTCCTTCATG+TGG | - | 51376:55583-55602 | MS.gene07077:intron | 50.0% | |
| CTCTTACGAGCATAGGACTG+AGG | - | 51376:55224-55243 | MS.gene07077:intron | 50.0% | |
| GGAACAAGTGGAGACCCTAA+AGG | - | 51376:53875-53894 | MS.gene07077:intron | 50.0% | |
| TAGGTCAAAGCTCGGTTAGG+AGG | - | 51376:54954-54973 | MS.gene07077:intron | 50.0% | |
| TCCATTGCCGCAATCCATTG+AGG | + | 51376:52487-52506 | None:intergenic | 50.0% | |
| TGTGGTTGTGCTAACAACGG+AGG | + | 51376:55182-55201 | None:intergenic | 50.0% | |
| ! | CTCAGGGTTTTTGTGGTAGC+CGG | + | 51376:55641-55660 | None:intergenic | 50.0% |
| ! | GCATCTGTTGGCTACTACCA+TGG | - | 51376:54233-54252 | MS.gene07077:intron | 50.0% |
| !! | TCAATGGATTGCGGCAATGG+AGG | - | 51376:52486-52505 | MS.gene07077:CDS | 50.0% |
| !! | TCCTCAATGGATTGCGGCAA+TGG | - | 51376:52483-52502 | MS.gene07077:CDS | 50.0% |
| TGAACTCAACGGTGCACCTC+CGG | + | 51376:55000-55019 | None:intergenic | 55.0% | |
| GGGACCCCAGCAAACAGTGT+TGG | + | 51376:54434-54453 | None:intergenic | 60.0% | |
| !! | GGCTTGTTGCGCCCATAGCT+TGG | - | 51376:52602-52621 | MS.gene07077:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51376 | gene | 52330 | 55705 | 52330 | ID=MS.gene07077 |
| 51376 | mRNA | 52330 | 55705 | 52330 | ID=MS.gene07077.t1;Parent=MS.gene07077 |
| 51376 | exon | 55674 | 55705 | 55674 | ID=MS.gene07077.t1.exon1;Parent=MS.gene07077.t1 |
| 51376 | CDS | 55674 | 55705 | 55674 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 55528 | 55584 | 55528 | ID=MS.gene07077.t1.exon2;Parent=MS.gene07077.t1 |
| 51376 | CDS | 55528 | 55584 | 55528 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 55384 | 55432 | 55384 | ID=MS.gene07077.t1.exon3;Parent=MS.gene07077.t1 |
| 51376 | CDS | 55384 | 55432 | 55384 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 54676 | 54752 | 54676 | ID=MS.gene07077.t1.exon4;Parent=MS.gene07077.t1 |
| 51376 | CDS | 54676 | 54752 | 54676 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 54519 | 54558 | 54519 | ID=MS.gene07077.t1.exon5;Parent=MS.gene07077.t1 |
| 51376 | CDS | 54519 | 54558 | 54519 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 54329 | 54423 | 54329 | ID=MS.gene07077.t1.exon6;Parent=MS.gene07077.t1 |
| 51376 | CDS | 54329 | 54423 | 54329 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 54062 | 54229 | 54062 | ID=MS.gene07077.t1.exon7;Parent=MS.gene07077.t1 |
| 51376 | CDS | 54062 | 54229 | 54062 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 53779 | 53889 | 53779 | ID=MS.gene07077.t1.exon8;Parent=MS.gene07077.t1 |
| 51376 | CDS | 53779 | 53889 | 53779 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 53556 | 53643 | 53556 | ID=MS.gene07077.t1.exon9;Parent=MS.gene07077.t1 |
| 51376 | CDS | 53556 | 53643 | 53556 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 53410 | 53476 | 53410 | ID=MS.gene07077.t1.exon10;Parent=MS.gene07077.t1 |
| 51376 | CDS | 53410 | 53476 | 53410 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 53193 | 53268 | 53193 | ID=MS.gene07077.t1.exon11;Parent=MS.gene07077.t1 |
| 51376 | CDS | 53193 | 53268 | 53193 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 52961 | 53078 | 52961 | ID=MS.gene07077.t1.exon12;Parent=MS.gene07077.t1 |
| 51376 | CDS | 52961 | 53078 | 52961 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| 51376 | exon | 52330 | 52580 | 52330 | ID=MS.gene07077.t1.exon13;Parent=MS.gene07077.t1 |
| 51376 | CDS | 52330 | 52580 | 52330 | ID=cds.MS.gene07077.t1;Parent=MS.gene07077.t1 |
| Gene Sequence |
| Protein sequence |
