Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050418.t1 | XP_003625997.2 | 98.4 | 444 | 7 | 0 | 1 | 444 | 55 | 498 | 5.20E-263 | 916.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050418.t1 | O22898 | 69.4 | 444 | 136 | 0 | 1 | 444 | 55 | 498 | 1.8e-192 | 673.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050418.t1 | G7KTN5 | 98.4 | 444 | 7 | 0 | 1 | 444 | 55 | 498 | 3.7e-263 | 916.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050418 | MS.gene050419 | 0.977531 | 5.73E-144 | -1.69E-46 |
| MS.gene050418 | MS.gene07077 | 0.996589 | 1.66E-229 | -1.69E-46 |
| MS.gene050418 | MS.gene07078 | 0.95293 | 8.33E-111 | -1.69E-46 |
| MS.gene050418 | MS.gene07080 | 0.950647 | 1.07E-108 | -1.69E-46 |
| MS.gene050418 | MS.gene072680 | 0.884077 | 2.61E-71 | -1.69E-46 |
| MS.gene050418 | MS.gene28831 | 0.954521 | 2.45E-112 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050418.t1 | MTR_7g109830 | 98.423 | 444 | 7 | 0 | 1 | 444 | 55 | 498 | 0.0 | 921 |
| MS.gene050418.t1 | MTR_1g086600 | 76.286 | 447 | 102 | 2 | 1 | 444 | 77 | 522 | 0.0 | 724 |
| MS.gene050418.t1 | MTR_8g099420 | 50.676 | 444 | 219 | 0 | 1 | 444 | 58 | 501 | 7.41e-163 | 474 |
| MS.gene050418.t1 | MTR_5g009350 | 51.126 | 444 | 217 | 0 | 1 | 444 | 57 | 500 | 3.21e-162 | 469 |
| MS.gene050418.t1 | MTR_5g009350 | 51.126 | 444 | 217 | 0 | 1 | 444 | 57 | 500 | 3.85e-162 | 470 |
| MS.gene050418.t1 | MTR_5g009350 | 51.126 | 444 | 217 | 0 | 1 | 444 | 57 | 500 | 2.92e-161 | 470 |
| MS.gene050418.t1 | MTR_5g009350 | 51.126 | 444 | 217 | 0 | 1 | 444 | 57 | 500 | 4.51e-161 | 470 |
| MS.gene050418.t1 | MTR_5g009360 | 50.450 | 444 | 220 | 0 | 1 | 444 | 57 | 500 | 8.53e-157 | 459 |
| MS.gene050418.t1 | MTR_4g068670 | 47.523 | 444 | 229 | 3 | 2 | 444 | 57 | 497 | 4.56e-145 | 429 |
| MS.gene050418.t1 | MTR_1g034360 | 47.404 | 443 | 232 | 1 | 2 | 444 | 58 | 499 | 2.35e-143 | 424 |
| MS.gene050418.t1 | MTR_5g009360 | 48.626 | 364 | 187 | 0 | 81 | 444 | 11 | 374 | 1.29e-117 | 354 |
| MS.gene050418.t1 | MTR_1g104810 | 39.278 | 443 | 255 | 7 | 5 | 444 | 31 | 462 | 2.60e-95 | 300 |
| MS.gene050418.t1 | MTR_1g104810 | 39.278 | 443 | 255 | 7 | 5 | 444 | 98 | 529 | 1.27e-94 | 300 |
| MS.gene050418.t1 | MTR_1g030290 | 32.688 | 465 | 267 | 12 | 8 | 444 | 93 | 539 | 5.16e-65 | 221 |
| MS.gene050418.t1 | MTR_3g087980 | 32.538 | 461 | 269 | 11 | 10 | 444 | 93 | 537 | 4.49e-64 | 219 |
| MS.gene050418.t1 | MTR_3g082660 | 30.689 | 479 | 289 | 12 | 1 | 444 | 101 | 571 | 3.01e-62 | 214 |
| MS.gene050418.t1 | MTR_3g084450 | 26.596 | 470 | 279 | 15 | 24 | 444 | 108 | 560 | 3.84e-35 | 138 |
| MS.gene050418.t1 | MTR_3g084470 | 26.170 | 470 | 279 | 14 | 24 | 444 | 106 | 556 | 5.97e-33 | 132 |
| MS.gene050418.t1 | MTR_8g083170 | 25.424 | 472 | 283 | 15 | 24 | 444 | 110 | 563 | 3.87e-32 | 129 |
| MS.gene050418.t1 | MTR_3g084450 | 30.868 | 311 | 170 | 11 | 167 | 444 | 54 | 352 | 1.49e-27 | 115 |
| MS.gene050418.t1 | MTR_5g007640 | 26.328 | 433 | 243 | 17 | 24 | 444 | 98 | 466 | 1.23e-17 | 85.9 |
| MS.gene050418.t1 | MTR_1g063110 | 24.528 | 318 | 188 | 10 | 134 | 444 | 155 | 427 | 1.80e-16 | 82.0 |
| MS.gene050418.t1 | MTR_4g011790 | 24.943 | 441 | 262 | 17 | 24 | 444 | 89 | 480 | 2.68e-14 | 75.5 |
| MS.gene050418.t1 | MTR_4g005750 | 36.975 | 119 | 67 | 5 | 331 | 443 | 303 | 419 | 1.67e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050418.t1 | AT2G47240 | 69.369 | 444 | 136 | 0 | 1 | 444 | 55 | 498 | 0.0 | 676 |
| MS.gene050418.t1 | AT2G47240 | 69.369 | 444 | 136 | 0 | 1 | 444 | 55 | 498 | 0.0 | 676 |
| MS.gene050418.t1 | AT2G47240 | 69.369 | 444 | 136 | 0 | 1 | 444 | 55 | 498 | 0.0 | 676 |
| MS.gene050418.t1 | AT2G47240 | 69.704 | 439 | 133 | 0 | 6 | 444 | 1 | 439 | 0.0 | 669 |
| MS.gene050418.t1 | AT4G23850 | 50.000 | 444 | 222 | 0 | 1 | 444 | 58 | 501 | 4.42e-164 | 478 |
| MS.gene050418.t1 | AT4G11030 | 50.225 | 444 | 221 | 0 | 1 | 444 | 58 | 501 | 4.88e-160 | 467 |
| MS.gene050418.t1 | AT1G64400 | 49.210 | 443 | 225 | 0 | 2 | 444 | 59 | 501 | 2.00e-159 | 466 |
| MS.gene050418.t1 | AT1G49430 | 46.067 | 445 | 239 | 1 | 1 | 444 | 58 | 502 | 1.61e-142 | 417 |
| MS.gene050418.t1 | AT1G49430 | 46.067 | 445 | 239 | 1 | 1 | 444 | 58 | 502 | 1.44e-140 | 417 |
| MS.gene050418.t1 | AT5G27600 | 39.462 | 446 | 258 | 6 | 1 | 444 | 97 | 532 | 1.65e-96 | 305 |
| MS.gene050418.t1 | AT3G05970 | 41.084 | 443 | 247 | 7 | 5 | 444 | 101 | 532 | 2.46e-93 | 296 |
| MS.gene050418.t1 | AT2G04350 | 30.561 | 481 | 287 | 12 | 1 | 444 | 94 | 564 | 8.11e-63 | 216 |
| MS.gene050418.t1 | AT2G04350 | 30.561 | 481 | 287 | 12 | 1 | 444 | 94 | 564 | 8.11e-63 | 216 |
| MS.gene050418.t1 | AT1G77590 | 29.670 | 455 | 273 | 12 | 17 | 444 | 101 | 535 | 1.15e-57 | 201 |
| MS.gene050418.t1 | AT1G77590 | 30.713 | 407 | 235 | 12 | 65 | 444 | 3 | 389 | 1.22e-50 | 180 |
| MS.gene050418.t1 | AT3G23790 | 27.623 | 467 | 275 | 14 | 24 | 444 | 112 | 561 | 9.69e-36 | 140 |
| MS.gene050418.t1 | AT4G14070 | 26.667 | 465 | 282 | 13 | 24 | 444 | 128 | 577 | 4.73e-34 | 135 |
| MS.gene050418.t1 | AT2G47245 | 68.293 | 41 | 13 | 0 | 1 | 41 | 88 | 128 | 1.52e-13 | 67.8 |
| MS.gene050418.t1 | AT2G17650 | 26.106 | 226 | 150 | 5 | 9 | 223 | 74 | 293 | 7.70e-11 | 64.7 |
Find 0 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTATTTTTGTTAAAA+GGG | - | 51375:37817-37836 | MS.gene050418:intron | 10.0% |
| !!! | TCTTTTTTATTTTTGTTAAA+AGG | - | 51375:37816-37835 | MS.gene050418:intron | 10.0% |
| !! | AAGACAATAATAAATATATC+TGG | + | 51375:39476-39495 | None:intergenic | 15.0% |
| !! | ATTGTGTAATTTCAATTATA+GGG | - | 51375:37856-37875 | MS.gene050418:intron | 15.0% |
| !! | CTTCAAAATAAAGATATATT+TGG | - | 51375:40706-40725 | MS.gene050418:intron | 15.0% |
| !! | TATTGTGTAATTTCAATTAT+AGG | - | 51375:37855-37874 | MS.gene050418:intron | 15.0% |
| !!! | AAAACATTACTTATTTTGTT+AGG | - | 51375:39341-39360 | MS.gene050418:CDS | 15.0% |
| !!! | AAACATTACTTATTTTGTTA+GGG | - | 51375:39342-39361 | MS.gene050418:CDS | 15.0% |
| !!! | TAAAACAAATAAATTTTGTG+CGG | + | 51375:39923-39942 | None:intergenic | 15.0% |
| !!! | TTTTAACTTTTAGCAAATTT+TGG | - | 51375:40080-40099 | MS.gene050418:intron | 15.0% |
| !! | AAAGTAAACAAACTATATTG+AGG | + | 51375:39760-39779 | None:intergenic | 20.0% |
| !! | AAGTAAACAAACTATATTGA+GGG | + | 51375:39759-39778 | None:intergenic | 20.0% |
| !! | AATTCATATACCACATTTAA+AGG | - | 51375:38829-38848 | MS.gene050418:CDS | 20.0% |
| !! | AGTTTACTGCATAAAAATAT+AGG | + | 51375:40179-40198 | None:intergenic | 20.0% |
| !! | ATGTAGTTAAAAGAATATCA+TGG | + | 51375:38603-38622 | None:intergenic | 20.0% |
| !! | GACATGAACATAAAATAAAA+TGG | + | 51375:37614-37633 | None:intergenic | 20.0% |
| !! | GTTCTACATTAAAAAAAGTA+AGG | + | 51375:38568-38587 | None:intergenic | 20.0% |
| !! | TCTATTATTACAATACATCA+TGG | - | 51375:40510-40529 | MS.gene050418:intron | 20.0% |
| !!! | AACATTACTTATTTTGTTAG+GGG | - | 51375:39343-39362 | MS.gene050418:CDS | 20.0% |
| !!! | ATATTTTTATGCAGTAAACT+TGG | - | 51375:40179-40198 | MS.gene050418:intron | 20.0% |
| !!! | CAGAAATATTTTCATTCATT+TGG | - | 51375:39696-39715 | MS.gene050418:intron | 20.0% |
| !!! | CATTTAAGATTATATCTTTC+AGG | - | 51375:39963-39982 | MS.gene050418:intron | 20.0% |
| !!! | GTTTTATCTTATAAGAATTG+TGG | + | 51375:40626-40645 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTTTATTTAGTGA+CGG | + | 51375:38396-38415 | None:intergenic | 20.0% |
| !!! | TTAACTTTATTTTCTTTGTG+TGG | - | 51375:39009-39028 | MS.gene050418:CDS | 20.0% |
| !!! | TTTTAGATGACATAAGTAAT+TGG | + | 51375:38360-38379 | None:intergenic | 20.0% |
| ! | AATGGTTAGTGCATAATATA+AGG | - | 51375:39129-39148 | MS.gene050418:intron | 25.0% |
| ! | ACACTATATATGGTTAATCT+AGG | - | 51375:40859-40878 | MS.gene050418:intron | 25.0% |
| ! | ACATAAGTAATTGGAGAAAT+TGG | + | 51375:38351-38370 | None:intergenic | 25.0% |
| ! | ACCAAAATCCATATAATTGT+CGG | + | 51375:40132-40151 | None:intergenic | 25.0% |
| ! | ACGTTCAATATAAAAACATG+AGG | + | 51375:38483-38502 | None:intergenic | 25.0% |
| ! | AGATAAATACACATCTTCAA+CGG | + | 51375:39579-39598 | None:intergenic | 25.0% |
| ! | CAATAGAGTAAAAACATAGA+AGG | + | 51375:37979-37998 | None:intergenic | 25.0% |
| ! | CAATTTAAACATCAAATGCA+GGG | - | 51375:38688-38707 | MS.gene050418:intron | 25.0% |
| ! | CATCATTCTCTATAATATCA+AGG | - | 51375:40575-40594 | MS.gene050418:intron | 25.0% |
| ! | GGACTTGAAAAAGTTTATAA+AGG | + | 51375:38547-38566 | None:intergenic | 25.0% |
| ! | GTATTATTATGTTACACAAC+TGG | + | 51375:38867-38886 | None:intergenic | 25.0% |
| ! | TAGGTAAAAGAAGTTAATAG+TGG | + | 51375:40306-40325 | None:intergenic | 25.0% |
| ! | TATGATAAAATTTACAGCAC+CGG | + | 51375:38715-38734 | None:intergenic | 25.0% |
| ! | TCAATTTAAACATCAAATGC+AGG | - | 51375:38687-38706 | MS.gene050418:intron | 25.0% |
| ! | TCCATAAATGAGTGAAAATA+CGG | - | 51375:38268-38287 | MS.gene050418:CDS | 25.0% |
| ! | TCTGTATTTACCTTTAAATG+TGG | + | 51375:38842-38861 | None:intergenic | 25.0% |
| ! | TGATCTATTAGCATTTAGAA+AGG | - | 51375:40247-40266 | MS.gene050418:intron | 25.0% |
| !! | ATTTGGATTTTCTTGACAAA+AGG | - | 51375:39713-39732 | MS.gene050418:intron | 25.0% |
| !! | CTATTAACTTCTTTTACCTA+TGG | - | 51375:40306-40325 | MS.gene050418:intron | 25.0% |
| !! | TGAAGTACTTACACTATATA+TGG | - | 51375:40849-40868 | MS.gene050418:intron | 25.0% |
| !! | TTGAGATTGGTGAAATTTTA+GGG | + | 51375:40341-40360 | None:intergenic | 25.0% |
| !! | TTTGGATTTTCTTGACAAAA+GGG | - | 51375:39714-39733 | MS.gene050418:intron | 25.0% |
| !! | TTTTCACTCATTTATGGAAT+TGG | + | 51375:38266-38285 | None:intergenic | 25.0% |
| !!! | AAAATCGACTGATTTGATAA+TGG | - | 51375:38235-38254 | MS.gene050418:CDS | 25.0% |
| !!! | CTTGCATAACTTTTTTATCT+TGG | + | 51375:38767-38786 | None:intergenic | 25.0% |
| !!! | GAGGAATATTTTTTCCATAA+GGG | - | 51375:39635-39654 | MS.gene050418:intron | 25.0% |
| !!! | TGAGGAATATTTTTTCCATA+AGG | - | 51375:39634-39653 | MS.gene050418:intron | 25.0% |
| !!! | TTTGAGATTGGTGAAATTTT+AGG | + | 51375:40342-40361 | None:intergenic | 25.0% |
| AGAGTAAAAACATAGAAGGA+AGG | + | 51375:37975-37994 | None:intergenic | 30.0% | |
| ATAAAAATATAGGTGTGCAG+TGG | + | 51375:40169-40188 | None:intergenic | 30.0% | |
| ATTTCGTTGTATACAGATAC+AGG | + | 51375:40955-40974 | None:intergenic | 30.0% | |
| CAATCTCAAATTTCTTTCCT+TGG | - | 51375:40352-40371 | MS.gene050418:intron | 30.0% | |
| CATAAATGAGTGAAAATACG+GGG | - | 51375:38270-38289 | MS.gene050418:CDS | 30.0% | |
| CCATAAATGAGTGAAAATAC+GGG | - | 51375:38269-38288 | MS.gene050418:CDS | 30.0% | |
| GAGGATGAAGTAAATATGTA+TGG | + | 51375:38102-38121 | None:intergenic | 30.0% | |
| GTATTTATCTTTCCTTCCTT+TGG | - | 51375:39589-39608 | MS.gene050418:CDS | 30.0% | |
| TATAGTTTGGATCATATGTG+TGG | - | 51375:37693-37712 | MS.gene050418:CDS | 30.0% | |
| TATGATGAAGTCATGCATAT+AGG | - | 51375:37734-37753 | MS.gene050418:CDS | 30.0% | |
| TCATGTAGACTTATATGACA+AGG | - | 51375:37632-37651 | MS.gene050418:CDS | 30.0% | |
| TGAGAACGTTATATAGAAGT+GGG | + | 51375:37940-37959 | None:intergenic | 30.0% | |
| TGCACAATAATGTATACTAG+TGG | - | 51375:39280-39299 | MS.gene050418:CDS | 30.0% | |
| TTGAAACTCATGTAGTAAAG+AGG | + | 51375:40281-40300 | None:intergenic | 30.0% | |
| ! | AAAACATGAGGTGTTAGAAT+CGG | + | 51375:38471-38490 | None:intergenic | 30.0% |
| ! | AAGCTTGTTTATGTTGATGT+AGG | - | 51375:38007-38026 | MS.gene050418:intron | 30.0% |
| ! | ACCGACAATTATATGGATTT+TGG | - | 51375:40128-40147 | MS.gene050418:intron | 30.0% |
| ! | CAAGGAAAGAAATTTGAGAT+TGG | + | 51375:40354-40373 | None:intergenic | 30.0% |
| ! | TTTCTCTGTTTTGTGCAATT+AGG | - | 51375:38128-38147 | MS.gene050418:intron | 30.0% |
| ! | TTTTATGCAGTAAACTTGGT+TGG | - | 51375:40183-40202 | MS.gene050418:intron | 30.0% |
| !!! | TACTTATTTTGTTAGGGGAA+TGG | - | 51375:39348-39367 | MS.gene050418:CDS | 30.0% |
| AAACTTGGTTGGATGAAGAA+AGG | - | 51375:40194-40213 | MS.gene050418:intron | 35.0% | |
| AAAGATAAAGCAACCAGCAT+TGG | - | 51375:39073-39092 | MS.gene050418:CDS | 35.0% | |
| AAATCAGCTTCACGATTGAA+AGG | - | 51375:38921-38940 | MS.gene050418:intron | 35.0% | |
| AACAATACTCTTACGAGCAT+AGG | - | 51375:40643-40662 | MS.gene050418:intron | 35.0% | |
| AAGATAAAGCAACCAGCATT+GGG | - | 51375:39074-39093 | MS.gene050418:CDS | 35.0% | |
| AATGCTAATAGATCAGCGAA+TGG | + | 51375:40242-40261 | None:intergenic | 35.0% | |
| AATTGTGGTTGTGCTAACAA+CGG | + | 51375:40611-40630 | None:intergenic | 35.0% | |
| ACAAAGGAATCCATAGTAGA+TGG | - | 51375:41090-41109 | MS.gene050418:CDS | 35.0% | |
| ATGGATCAAATTGTCCTCAA+TGG | - | 51375:37896-37915 | MS.gene050418:intron | 35.0% | |
| ATGGATTCCTTTGTTAACTC+AGG | + | 51375:41084-41103 | None:intergenic | 35.0% | |
| ATGTATACTAGTGGAACAAG+TGG | - | 51375:39289-39308 | MS.gene050418:CDS | 35.0% | |
| ATTTCTTTCCTTGGTGAGTT+AGG | - | 51375:40361-40380 | MS.gene050418:intron | 35.0% | |
| CAAAAACCCTGAGTTAACAA+AGG | - | 51375:41074-41093 | MS.gene050418:intron | 35.0% | |
| CATATATTATGAGCTTGTGG+TGG | + | 51375:39262-39281 | None:intergenic | 35.0% | |
| CATCTTACTACTACCTTGTA+GGG | - | 51375:39211-39230 | MS.gene050418:intron | 35.0% | |
| CCAAAAACTGTTCTTCTAAC+TGG | + | 51375:40017-40036 | None:intergenic | 35.0% | |
| CGTGTTCGACTAATAATAAC+CGG | - | 51375:40404-40423 | MS.gene050418:intron | 35.0% | |
| GAGTCAAAACAACACCTTTA+GGG | + | 51375:39318-39337 | None:intergenic | 35.0% | |
| GTCTGAAAATGATCCTAGTT+GGG | - | 51375:38154-38173 | MS.gene050418:intron | 35.0% | |
| GTGAGAACGTTATATAGAAG+TGG | + | 51375:37941-37960 | None:intergenic | 35.0% | |
| GTGCATATATTATGAGCTTG+TGG | + | 51375:39265-39284 | None:intergenic | 35.0% | |
| TAGGTTTGACTGAAACTTGT+GGG | - | 51375:40878-40897 | MS.gene050418:intron | 35.0% | |
| TATCCTCAAAACCGTATGTT+GGG | - | 51375:37547-37566 | MS.gene050418:CDS | 35.0% | |
| TCATCTTACTACTACCTTGT+AGG | - | 51375:39210-39229 | MS.gene050418:intron | 35.0% | |
| TCTGAAAATGATCCTAGTTG+GGG | - | 51375:38155-38174 | MS.gene050418:intron | 35.0% | |
| TCTTCAATCTCTGAACTCAA+CGG | + | 51375:40437-40456 | None:intergenic | 35.0% | |
| TGAGTCAAAACAACACCTTT+AGG | + | 51375:39319-39338 | None:intergenic | 35.0% | |
| TGCACAAAACAGAGAAAACA+GGG | + | 51375:38125-38144 | None:intergenic | 35.0% | |
| TGCATTGAGGGATGATTTAA+TGG | - | 51375:39826-39845 | MS.gene050418:intron | 35.0% | |
| TGGATTCCTTTGTTAACTCA+GGG | + | 51375:41083-41102 | None:intergenic | 35.0% | |
| TGTGACAACCGACAATTATA+TGG | - | 51375:40121-40140 | MS.gene050418:intron | 35.0% | |
| TTGAAAAGGTCTATGAAGGT+AGG | - | 51375:39888-39907 | MS.gene050418:intron | 35.0% | |
| TTGCACAAAACAGAGAAAAC+AGG | + | 51375:38126-38145 | None:intergenic | 35.0% | |
| TTTAGGGAAGGTTAATCCAT+AGG | + | 51375:40325-40344 | None:intergenic | 35.0% | |
| ! | AGACCTTTTCAAAGACTCTA+GGG | + | 51375:39880-39899 | None:intergenic | 35.0% |
| ! | CCAGTTAGAAGAACAGTTTT+TGG | - | 51375:40014-40033 | MS.gene050418:intron | 35.0% |
| ! | CCCGTATTTTCACTCATTTA+TGG | + | 51375:38272-38291 | None:intergenic | 35.0% |
| ! | GTCTTTGAAAAGGTCTATGA+AGG | - | 51375:39884-39903 | MS.gene050418:intron | 35.0% |
| ! | TAGACCTTTTCAAAGACTCT+AGG | + | 51375:39881-39900 | None:intergenic | 35.0% |
| ! | TAGGGGAATGGATATTTTCA+TGG | - | 51375:39360-39379 | MS.gene050418:CDS | 35.0% |
| ! | TTGTTAACTCAGGGTTTTTG+TGG | + | 51375:41074-41093 | None:intergenic | 35.0% |
| !! | AAATTGTCCTCAATGGATTG+CGG | - | 51375:37903-37922 | MS.gene050418:intron | 35.0% |
| !! | ATCGACTGATTTGATAATGG+AGG | - | 51375:38238-38257 | MS.gene050418:CDS | 35.0% |
| !! | GATTGGTGAAATTTTAGGGA+AGG | + | 51375:40337-40356 | None:intergenic | 35.0% |
| !! | TCGACTGATTTGATAATGGA+GGG | - | 51375:38239-38258 | MS.gene050418:CDS | 35.0% |
| !! | TTACCAAGAGTATCATAGAG+AGG | + | 51375:38062-38081 | None:intergenic | 35.0% |
| !! | TTTGAGTTGCTTGTGAATGA+AGG | - | 51375:39796-39815 | MS.gene050418:intron | 35.0% |
| !! | TTTTTGGCATGCTCTACAAA+CGG | - | 51375:40030-40049 | MS.gene050418:intron | 35.0% |
| !!! | GAATTTTTGCGTGTTACTTC+TGG | - | 51375:40455-40474 | MS.gene050418:intron | 35.0% |
| AAGAACTCTTCCCAGGAATA+TGG | + | 51375:39106-39125 | None:intergenic | 40.0% | |
| ACTAGAAGAAGTTCCAGAGA+TGG | - | 51375:40978-40997 | MS.gene050418:intron | 40.0% | |
| AGATAAAGCAACCAGCATTG+GGG | - | 51375:39075-39094 | MS.gene050418:CDS | 40.0% | |
| AGGAATCCATAGTAGATGGA+TGG | - | 51375:41094-41113 | MS.gene050418:CDS | 40.0% | |
| AGGTACACAAACCAAGCTAT+GGG | + | 51375:38042-38061 | None:intergenic | 40.0% | |
| ATAGACACAAACACGAGTAC+TGG | + | 51375:40816-40835 | None:intergenic | 40.0% | |
| ATTCCTCAATTGTCCGATCA+AGG | + | 51375:39622-39641 | None:intergenic | 40.0% | |
| CAATTATAGGGCTCACGAAT+TGG | - | 51375:37868-37887 | MS.gene050418:intron | 40.0% | |
| CATGGAACAGTTTGAAGACA+AGG | - | 51375:39378-39397 | MS.gene050418:CDS | 40.0% | |
| CATTTGTAAGAACTCTTCCC+AGG | + | 51375:39113-39132 | None:intergenic | 40.0% | |
| CGTCTGAAAATGATCCTAGT+TGG | - | 51375:38153-38172 | MS.gene050418:intron | 40.0% | |
| CTAGAAGAAGTTCCAGAGAT+GGG | - | 51375:40979-40998 | MS.gene050418:intron | 40.0% | |
| CTAGGTTTGACTGAAACTTG+TGG | - | 51375:40877-40896 | MS.gene050418:intron | 40.0% | |
| CTGGGAAGAGTTCTTACAAA+TGG | - | 51375:39111-39130 | MS.gene050418:intron | 40.0% | |
| GAAGGATCTAACTGCATTGA+GGG | - | 51375:39814-39833 | MS.gene050418:intron | 40.0% | |
| GCACAAAACAGAGAAAACAG+GGG | + | 51375:38124-38143 | None:intergenic | 40.0% | |
| GTACCTCTCTATGATACTCT+TGG | - | 51375:38056-38075 | MS.gene050418:intron | 40.0% | |
| GTGAAACCATCCATCTACTA+TGG | + | 51375:41103-41122 | None:intergenic | 40.0% | |
| GTTCGACTAATAATAACCGG+AGG | - | 51375:40407-40426 | MS.gene050418:intron | 40.0% | |
| TAAACATCAAATGCAGGGTC+CGG | - | 51375:38693-38712 | MS.gene050418:intron | 40.0% | |
| TATCCTTGATCGGACAATTG+AGG | - | 51375:39616-39635 | MS.gene050418:CDS | 40.0% | |
| TGAAACCAACACTGTTTGCT+GGG | - | 51375:39852-39871 | MS.gene050418:intron | 40.0% | |
| TGAAGGATCTAACTGCATTG+AGG | - | 51375:39813-39832 | MS.gene050418:intron | 40.0% | |
| TGTATGTCAAGGCTATGGTA+AGG | - | 51375:40484-40503 | MS.gene050418:intron | 40.0% | |
| TTCAGGTATCAAGAAAGCAG+TGG | - | 51375:39980-39999 | MS.gene050418:intron | 40.0% | |
| TTGAAACCAACACTGTTTGC+TGG | - | 51375:39851-39870 | MS.gene050418:intron | 40.0% | |
| ! | AGAGGGAAATCAGTTTTCTC+CGG | - | 51375:41045-41064 | MS.gene050418:intron | 40.0% |
| ! | CGTGAAGCTGATTTACAATC+AGG | + | 51375:38915-38934 | None:intergenic | 40.0% |
| ! | CTTTGGCTCATATCCTTGAT+CGG | - | 51375:39606-39625 | MS.gene050418:CDS | 40.0% |
| ! | GCTTTTGTATGTCAAGGCTA+TGG | - | 51375:40479-40498 | MS.gene050418:intron | 40.0% |
| ! | TCTGGTGCTTTTGTATGTCA+AGG | - | 51375:40473-40492 | MS.gene050418:intron | 40.0% |
| ! | TGGAGTTTCTTTTCCCTACA+AGG | + | 51375:39227-39246 | None:intergenic | 40.0% |
| ! | TGGGGTCACTCTTCATATTT+TGG | - | 51375:38173-38192 | MS.gene050418:intron | 40.0% |
| !! | GAGAAATTGGTGTCAATGCT+AGG | + | 51375:38338-38357 | None:intergenic | 40.0% |
| !! | GCGTGAATTTGTTGATGGAA+AGG | - | 51375:37573-37592 | MS.gene050418:CDS | 40.0% |
| AGACATATCTCGCCACATGA+AGG | + | 51375:41024-41043 | None:intergenic | 45.0% | |
| AGAGGATTGTAACCCATCTC+TGG | + | 51375:40994-41013 | None:intergenic | 45.0% | |
| AGTTAGGTCAAAGCTCGGTT+AGG | - | 51375:40377-40396 | MS.gene050418:intron | 45.0% | |
| ATATGGCTTAACCCCAATGC+TGG | + | 51375:39089-39108 | None:intergenic | 45.0% | |
| ATGTGCATGCTTGGTACTGT+TGG | - | 51375:40928-40947 | MS.gene050418:CDS | 45.0% | |
| ATTCACGCCATCCCAACATA+CGG | + | 51375:37561-37580 | None:intergenic | 45.0% | |
| CAAAACAGAGAAAACAGGGG+AGG | + | 51375:38121-38140 | None:intergenic | 45.0% | |
| CAAGGATATGAGCCAAAGGA+AGG | + | 51375:39604-39623 | None:intergenic | 45.0% | |
| CCAAGCATGCACATTTCATC+AGG | + | 51375:40922-40941 | None:intergenic | 45.0% | |
| CCTGATGAAATGTGCATGCT+TGG | - | 51375:40919-40938 | MS.gene050418:CDS | 45.0% | |
| CGATCAAGGATATGAGCCAA+AGG | + | 51375:39608-39627 | None:intergenic | 45.0% | |
| CTCAAAACCGTATGTTGGGA+TGG | - | 51375:37551-37570 | MS.gene050418:CDS | 45.0% | |
| CTGCATGAACATATACCCCA+TGG | + | 51375:39679-39698 | None:intergenic | 45.0% | |
| GAGGTACACAAACCAAGCTA+TGG | + | 51375:38043-38062 | None:intergenic | 45.0% | |
| GGCTCACGAATTGGAGTTTA+TGG | - | 51375:37877-37896 | MS.gene050418:intron | 45.0% | |
| GTAGATGGATGGTTTCACAC+AGG | - | 51375:41105-41124 | MS.gene050418:CDS | 45.0% | |
| GTGGCGAGATATGTCTTAGA+GGG | - | 51375:41028-41047 | MS.gene050418:intron | 45.0% | |
| TATGAAGAGTGACCCCAACT+AGG | + | 51375:38170-38189 | None:intergenic | 45.0% | |
| TGGGGTTAAGCCATATTCCT+GGG | - | 51375:39093-39112 | MS.gene050418:intron | 45.0% | |
| TGGTGAGTTAGGTCAAAGCT+CGG | - | 51375:40372-40391 | MS.gene050418:intron | 45.0% | |
| TGTGGCGAGATATGTCTTAG+AGG | - | 51375:41027-41046 | MS.gene050418:intron | 45.0% | |
| TTGGGGTTAAGCCATATTCC+TGG | - | 51375:39092-39111 | MS.gene050418:intron | 45.0% | |
| ! | AGCTTTGACCTAACTCACCA+AGG | + | 51375:40372-40391 | None:intergenic | 45.0% |
| ! | ATCTGTTGGCTACTACCATG+GGG | - | 51375:39661-39680 | MS.gene050418:intron | 45.0% |
| ! | ATGAGCTTGTGGTGGTGAAA+TGG | + | 51375:39254-39273 | None:intergenic | 45.0% |
| ! | CATCCCAACATACGGTTTTG+AGG | + | 51375:37553-37572 | None:intergenic | 45.0% |
| ! | CATCTGTTGGCTACTACCAT+GGG | - | 51375:39660-39679 | MS.gene050418:intron | 45.0% |
| ! | GAAACCAACACTGTTTGCTG+GGG | - | 51375:39853-39872 | MS.gene050418:intron | 45.0% |
| ! | GGTCCCTAGAGTCTTTGAAA+AGG | - | 51375:39874-39893 | MS.gene050418:intron | 45.0% |
| ! | TGTGGTGGTGAAATGGTTGA+TGG | + | 51375:39247-39266 | None:intergenic | 45.0% |
| ! | TTCCATAAGGGTGCATCTGT+TGG | - | 51375:39647-39666 | MS.gene050418:intron | 45.0% |
| !! | GAGATGGGTTACAATCCTCT+TGG | - | 51375:40994-41013 | MS.gene050418:intron | 45.0% |
| !! | GGATGGCGTGAATTTGTTGA+TGG | - | 51375:37568-37587 | MS.gene050418:CDS | 45.0% |
| !! | TAAAAATAAAGAAAAATTTA+AGG | + | 51375:38308-38327 | None:intergenic | 5.0% |
| !!! | ATATTTTAAAATTATTAACA+CGG | - | 51375:40769-40788 | MS.gene050418:CDS | 5.0% |
| !!! | ATTTTTAATTACTTATTTAT+CGG | - | 51375:38621-38640 | MS.gene050418:intron | 5.0% |
| !!! | TATTTTATTTTATTATAGTT+TGG | - | 51375:37680-37699 | MS.gene050418:CDS | 5.0% |
| AGCCAACAGATGCACCCTTA+TGG | + | 51375:39652-39671 | None:intergenic | 50.0% | |
| CCACATGAAGGAGTTCCAAG+AGG | + | 51375:41012-41031 | None:intergenic | 50.0% | |
| CCTCTTGGAACTCCTTCATG+TGG | - | 51375:41009-41028 | MS.gene050418:intron | 50.0% | |
| CTCTTACGAGCATAGGACTG+AGG | - | 51375:40650-40669 | MS.gene050418:intron | 50.0% | |
| GGAACAAGTGGAGACCCTAA+AGG | - | 51375:39301-39320 | MS.gene050418:CDS | 50.0% | |
| TAGGTCAAAGCTCGGTTAGG+AGG | - | 51375:40380-40399 | MS.gene050418:intron | 50.0% | |
| TCCATTGCCGCAATCCATTG+AGG | + | 51375:37913-37932 | None:intergenic | 50.0% | |
| TGTGGTTGTGCTAACAACGG+AGG | + | 51375:40608-40627 | None:intergenic | 50.0% | |
| ! | CTCAGGGTTTTTGTGGTAGC+CGG | + | 51375:41067-41086 | None:intergenic | 50.0% |
| ! | GCATCTGTTGGCTACTACCA+TGG | - | 51375:39659-39678 | MS.gene050418:intron | 50.0% |
| !! | TCAATGGATTGCGGCAATGG+AGG | - | 51375:37912-37931 | MS.gene050418:intron | 50.0% |
| !! | TCCTCAATGGATTGCGGCAA+TGG | - | 51375:37909-37928 | MS.gene050418:intron | 50.0% |
| GGTTCAGCTCTACGTGCATC+TGG | - | 51375:37755-37774 | MS.gene050418:CDS | 55.0% | |
| TGAACTCAACGGTGCACCTC+CGG | + | 51375:40426-40445 | None:intergenic | 55.0% | |
| GGGACCCCAGCAAACAGTGT+TGG | + | 51375:39860-39879 | None:intergenic | 60.0% | |
| !! | GGCTTGTTGCGCCCATAGCT+TGG | - | 51375:38028-38047 | MS.gene050418:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51375 | gene | 37547 | 41131 | 37547 | ID=MS.gene050418 |
| 51375 | mRNA | 37547 | 41131 | 37547 | ID=MS.gene050418.t1;Parent=MS.gene050418 |
| 51375 | exon | 41084 | 41131 | 41084 | ID=MS.gene050418.t1.exon1;Parent=MS.gene050418.t1 |
| 51375 | CDS | 41084 | 41131 | 41084 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 40891 | 40980 | 40891 | ID=MS.gene050418.t1.exon2;Parent=MS.gene050418.t1 |
| 51375 | CDS | 40891 | 40980 | 40891 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 40745 | 40801 | 40745 | ID=MS.gene050418.t1.exon3;Parent=MS.gene050418.t1 |
| 51375 | CDS | 40745 | 40801 | 40745 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 40601 | 40649 | 40601 | ID=MS.gene050418.t1.exon4;Parent=MS.gene050418.t1 |
| 51375 | CDS | 40601 | 40649 | 40601 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 39893 | 39969 | 39893 | ID=MS.gene050418.t1.exon5;Parent=MS.gene050418.t1 |
| 51375 | CDS | 39893 | 39969 | 39893 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 39736 | 39775 | 39736 | ID=MS.gene050418.t1.exon6;Parent=MS.gene050418.t1 |
| 51375 | CDS | 39736 | 39775 | 39736 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 39546 | 39640 | 39546 | ID=MS.gene050418.t1.exon7;Parent=MS.gene050418.t1 |
| 51375 | CDS | 39546 | 39640 | 39546 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 39279 | 39446 | 39279 | ID=MS.gene050418.t1.exon8;Parent=MS.gene050418.t1 |
| 51375 | CDS | 39279 | 39446 | 39279 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 38996 | 39106 | 38996 | ID=MS.gene050418.t1.exon9;Parent=MS.gene050418.t1 |
| 51375 | CDS | 38996 | 39106 | 38996 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 38773 | 38860 | 38773 | ID=MS.gene050418.t1.exon10;Parent=MS.gene050418.t1 |
| 51375 | CDS | 38773 | 38860 | 38773 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 38627 | 38693 | 38627 | ID=MS.gene050418.t1.exon11;Parent=MS.gene050418.t1 |
| 51375 | CDS | 38627 | 38693 | 38627 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 38410 | 38485 | 38410 | ID=MS.gene050418.t1.exon12;Parent=MS.gene050418.t1 |
| 51375 | CDS | 38410 | 38485 | 38410 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 38178 | 38295 | 38178 | ID=MS.gene050418.t1.exon13;Parent=MS.gene050418.t1 |
| 51375 | CDS | 38178 | 38295 | 38178 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| 51375 | exon | 37547 | 37797 | 37547 | ID=MS.gene050418.t1.exon14;Parent=MS.gene050418.t1 |
| 51375 | CDS | 37547 | 37797 | 37547 | ID=cds.MS.gene050418.t1;Parent=MS.gene050418.t1 |
| Gene Sequence |
| Protein sequence |
