Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07078.t1 | XP_003625997.2 | 98.5 | 601 | 9 | 0 | 1 | 601 | 45 | 645 | 0.00E+00 | 1228.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07078.t1 | O22898 | 68.7 | 601 | 188 | 0 | 1 | 601 | 45 | 645 | 1.2e-258 | 893.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07078.t1 | G7KTN5 | 98.5 | 601 | 9 | 0 | 1 | 601 | 45 | 645 | 0.0e+00 | 1228.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050418 | MS.gene07078 | 0.95293 | 8.33E-111 | -1.69E-46 |
| MS.gene050419 | MS.gene07078 | 0.958465 | 2.20E-116 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATGTAGTAATAATAT+GGG | - | 51332:7961-7980 | MS.gene07078:intron | 10.0% |
| !!! | CTTTAAAATTATTCATATTT+AGG | - | 51332:12215-12234 | MS.gene07078:CDS | 10.0% |
| !!! | CTTTTTTATTTTTGTTAAAA+GGG | - | 51332:8546-8565 | MS.gene07078:intron | 10.0% |
| !!! | TCTTTTTTATTTTTGTTAAA+AGG | - | 51332:8545-8564 | MS.gene07078:intron | 10.0% |
| !! | AAGACAATAATAAATATATC+TGG | + | 51332:10205-10224 | MS.gene07078:intergenic | 15.0% |
| !! | ATTGTCCAATATAAAATAAA+TGG | - | 51332:8098-8117 | MS.gene07078:intron | 15.0% |
| !! | ATTGTGTAATTTCAATTATA+GGG | - | 51332:8585-8604 | MS.gene07078:intron | 15.0% |
| !! | CATATTATTACTACATTATA+AGG | + | 51332:7962-7981 | MS.gene07078:intergenic | 15.0% |
| !! | CTTATAATGTAGTAATAATA+TGG | - | 51332:7960-7979 | MS.gene07078:intron | 15.0% |
| !! | CTTCAAAATAAAGATATATT+TGG | - | 51332:11435-11454 | MS.gene07078:intron | 15.0% |
| !! | TATTGTGTAATTTCAATTAT+AGG | - | 51332:8584-8603 | MS.gene07078:intron | 15.0% |
| !! | TTTAACTATATGTAAAAAGT+TGG | - | 51332:7909-7928 | MS.gene07078:CDS | 15.0% |
| !!! | AAAACATTACTTATTTTGTT+AGG | - | 51332:10070-10089 | MS.gene07078:intron | 15.0% |
| !!! | AAACATTACTTATTTTGTTA+GGG | - | 51332:10071-10090 | MS.gene07078:intron | 15.0% |
| !!! | AACTTCCATTTATTTTATAT+TGG | + | 51332:8106-8125 | MS.gene07078:intergenic | 15.0% |
| !!! | TAAAACAAATAAATTTTGTG+CGG | + | 51332:10652-10671 | MS.gene07078:intergenic | 15.0% |
| !!! | TTTTAACTTTTAGCAAATTT+TGG | - | 51332:10809-10828 | MS.gene07078:intron | 15.0% |
| !! | AAAAAACCTTCATAATGAAT+TGG | - | 51332:8197-8216 | MS.gene07078:intron | 20.0% |
| !! | AAAATTCAGTATTGTTCATA+CGG | - | 51332:12099-12118 | MS.gene07078:CDS | 20.0% |
| !! | AAAGTAAACAAACTATATTG+AGG | + | 51332:10489-10508 | MS.gene07078:intergenic | 20.0% |
| !! | AAGTAAACAAACTATATTGA+GGG | + | 51332:10488-10507 | MS.gene07078:intergenic | 20.0% |
| !! | AATTCATATACCACATTTAA+AGG | - | 51332:9558-9577 | MS.gene07078:CDS | 20.0% |
| !! | AGTTTACTGCATAAAAATAT+AGG | + | 51332:10908-10927 | MS.gene07078:intergenic | 20.0% |
| !! | ATAACACATATTTCTTGAAT+TGG | + | 51332:12410-12429 | MS.gene07078:intergenic | 20.0% |
| !! | ATGTAGTTAAAAGAATATCA+TGG | + | 51332:9332-9351 | MS.gene07078:intergenic | 20.0% |
| !! | GACATGAACATAAAATAAAA+TGG | + | 51332:8343-8362 | MS.gene07078:intergenic | 20.0% |
| !! | GTTCTACATTAAAAAAAGTA+AGG | + | 51332:9297-9316 | MS.gene07078:intergenic | 20.0% |
| !! | TAACACAAGAAAAATACAAT+TGG | + | 51332:12504-12523 | MS.gene07078:intergenic | 20.0% |
| !! | TCTATTATTACAATACATCA+TGG | - | 51332:11239-11258 | MS.gene07078:CDS | 20.0% |
| !!! | AACATTACTTATTTTGTTAG+GGG | - | 51332:10072-10091 | MS.gene07078:intron | 20.0% |
| !!! | ATATTTTTATGCAGTAAACT+TGG | - | 51332:10908-10927 | MS.gene07078:CDS | 20.0% |
| !!! | CAGAAATATTTTCATTCATT+TGG | - | 51332:10425-10444 | MS.gene07078:intron | 20.0% |
| !!! | CATTTAAGATTATATCTTTC+AGG | - | 51332:10692-10711 | MS.gene07078:CDS | 20.0% |
| !!! | GTTTTATCTTATAAGAATTG+TGG | + | 51332:11355-11374 | MS.gene07078:intergenic | 20.0% |
| !!! | GTTTTTCTTTTATTTAGTGA+CGG | + | 51332:9125-9144 | MS.gene07078:intergenic | 20.0% |
| !!! | TATTGTTGTGTTTTTGTATA+AGG | - | 51332:12257-12276 | MS.gene07078:CDS | 20.0% |
| !!! | TTAACTTTATTTTCTTTGTG+TGG | - | 51332:9738-9757 | MS.gene07078:CDS | 20.0% |
| !!! | TTCTTCTTCTCTTTTTTTAT+AGG | + | 51332:8177-8196 | MS.gene07078:intergenic | 20.0% |
| !!! | TTTTAGATGACATAAGTAAT+TGG | + | 51332:9089-9108 | MS.gene07078:intergenic | 20.0% |
| ! | AATATGCTCAAGTATTATCA+GGG | - | 51332:12886-12905 | MS.gene07078:intron | 25.0% |
| ! | AATGGTTAGTGCATAATATA+AGG | - | 51332:9858-9877 | MS.gene07078:intron | 25.0% |
| ! | AATTTGATTGTGACATTGTT+TGG | - | 51332:11919-11938 | MS.gene07078:intron | 25.0% |
| ! | ACACTATATATGGTTAATCT+AGG | - | 51332:11588-11607 | MS.gene07078:intron | 25.0% |
| ! | ACATAAGTAATTGGAGAAAT+TGG | + | 51332:9080-9099 | MS.gene07078:intergenic | 25.0% |
| ! | ACCAAAATCCATATAATTGT+CGG | + | 51332:10861-10880 | MS.gene07078:intergenic | 25.0% |
| ! | ACGTTCAATATAAAAACATG+AGG | + | 51332:9212-9231 | MS.gene07078:intergenic | 25.0% |
| ! | AGATAAATACACATCTTCAA+CGG | + | 51332:10308-10327 | MS.gene07078:intergenic | 25.0% |
| ! | ATAATCTTAACAACACCATT+AGG | + | 51332:11974-11993 | MS.gene07078:intergenic | 25.0% |
| ! | ATCTTCAAAACAAAAGTTTG+AGG | + | 51332:11884-11903 | MS.gene07078:intergenic | 25.0% |
| ! | ATTCAAATACGCTCTTAATT+AGG | - | 51332:12727-12746 | MS.gene07078:intron | 25.0% |
| ! | CAATAGAGTAAAAACATAGA+AGG | + | 51332:8708-8727 | MS.gene07078:intergenic | 25.0% |
| ! | CAATTTAAACATCAAATGCA+GGG | - | 51332:9417-9436 | MS.gene07078:intron | 25.0% |
| ! | CATCATTCTCTATAATATCA+AGG | - | 51332:11304-11323 | MS.gene07078:intron | 25.0% |
| ! | GAGTATTTGGAAAATGTTTA+TGG | - | 51332:12046-12065 | MS.gene07078:intron | 25.0% |
| ! | GGACTTGAAAAAGTTTATAA+AGG | + | 51332:9276-9295 | MS.gene07078:intergenic | 25.0% |
| ! | GTATTATTATGTTACACAAC+TGG | + | 51332:9596-9615 | MS.gene07078:intergenic | 25.0% |
| ! | TAGGTAAAAGAAGTTAATAG+TGG | + | 51332:11035-11054 | MS.gene07078:intergenic | 25.0% |
| ! | TATGATAAAATTTACAGCAC+CGG | + | 51332:9444-9463 | MS.gene07078:intergenic | 25.0% |
| ! | TCAATTTAAACATCAAATGC+AGG | - | 51332:9416-9435 | MS.gene07078:intron | 25.0% |
| ! | TCCATAAATGAGTGAAAATA+CGG | - | 51332:8997-9016 | MS.gene07078:CDS | 25.0% |
| ! | TCTGTATTTACCTTTAAATG+TGG | + | 51332:9571-9590 | MS.gene07078:intergenic | 25.0% |
| ! | TGATCTATTAGCATTTAGAA+AGG | - | 51332:10976-10995 | MS.gene07078:intron | 25.0% |
| !! | ATTTGGATTTTCTTGACAAA+AGG | - | 51332:10442-10461 | MS.gene07078:intron | 25.0% |
| !! | CTATTAACTTCTTTTACCTA+TGG | - | 51332:11035-11054 | MS.gene07078:intron | 25.0% |
| !! | GCATTTTTCCACAATATATA+GGG | + | 51332:12155-12174 | MS.gene07078:intergenic | 25.0% |
| !! | GTGTTGTTAAGATTATTGAT+AGG | - | 51332:11978-11997 | MS.gene07078:intron | 25.0% |
| !! | TGAAGTACTTACACTATATA+TGG | - | 51332:11578-11597 | MS.gene07078:intron | 25.0% |
| !! | TGCATTTTTCCACAATATAT+AGG | + | 51332:12156-12175 | MS.gene07078:intergenic | 25.0% |
| !! | TTGAGATTGGTGAAATTTTA+GGG | + | 51332:11070-11089 | MS.gene07078:intergenic | 25.0% |
| !! | TTTGGATTTTCTTGACAAAA+GGG | - | 51332:10443-10462 | MS.gene07078:intron | 25.0% |
| !! | TTTTCACTCATTTATGGAAT+TGG | + | 51332:8995-9014 | MS.gene07078:intergenic | 25.0% |
| !!! | AAAATCGACTGATTTGATAA+TGG | - | 51332:8964-8983 | MS.gene07078:CDS | 25.0% |
| !!! | CTTGCATAACTTTTTTATCT+TGG | + | 51332:9496-9515 | MS.gene07078:intergenic | 25.0% |
| !!! | GAGGAATATTTTTTCCATAA+GGG | - | 51332:10364-10383 | MS.gene07078:CDS | 25.0% |
| !!! | TGAGGAATATTTTTTCCATA+AGG | - | 51332:10363-10382 | MS.gene07078:CDS | 25.0% |
| !!! | TGTGTTTTTGTATAAGGTTT+GGG | - | 51332:12263-12282 | MS.gene07078:CDS | 25.0% |
| !!! | TTGTGTTTTTGTATAAGGTT+TGG | - | 51332:12262-12281 | MS.gene07078:CDS | 25.0% |
| !!! | TTTGAGATTGGTGAAATTTT+AGG | + | 51332:11071-11090 | MS.gene07078:intergenic | 25.0% |
| !!! | TTTTTTATAGGAAGCTCATT+AGG | + | 51332:8165-8184 | MS.gene07078:intergenic | 25.0% |
| AAGTCTCTTTCCATATCAAA+TGG | + | 51332:12835-12854 | MS.gene07078:intergenic | 30.0% | |
| AATCTCATAAAACTTTCCCA+AGG | - | 51332:12007-12026 | MS.gene07078:intron | 30.0% | |
| ACACTACAATCATCAAAGAA+AGG | + | 51332:8243-8262 | MS.gene07078:intergenic | 30.0% | |
| AGAGTAAAAACATAGAAGGA+AGG | + | 51332:8704-8723 | MS.gene07078:intergenic | 30.0% | |
| ATAAAAATATAGGTGTGCAG+TGG | + | 51332:10898-10917 | MS.gene07078:intergenic | 30.0% | |
| ATAGGAGAAATTCAACCTAA+TGG | - | 51332:11956-11975 | MS.gene07078:intron | 30.0% | |
| ATGAAGAAATCACCAAGAAA+TGG | - | 51332:12334-12353 | MS.gene07078:intron | 30.0% | |
| ATGCTTACATCTTCTACTAT+TGG | + | 51332:12079-12098 | MS.gene07078:intergenic | 30.0% | |
| ATGTAGTAATAATATGGGAC+TGG | - | 51332:7966-7985 | MS.gene07078:intron | 30.0% | |
| ATTTCGTTGTATACAGATAC+AGG | + | 51332:11684-11703 | MS.gene07078:intergenic | 30.0% | |
| ATTTGATATGGAAAGAGACT+TGG | - | 51332:12834-12853 | MS.gene07078:intron | 30.0% | |
| CAATATGCTCAAGTATTATC+AGG | - | 51332:12885-12904 | MS.gene07078:intron | 30.0% | |
| CAATCTCAAATTTCTTTCCT+TGG | - | 51332:11081-11100 | MS.gene07078:intron | 30.0% | |
| CACTACAATCATCAAAGAAA+GGG | + | 51332:8242-8261 | MS.gene07078:intergenic | 30.0% | |
| CATAAATGAGTGAAAATACG+GGG | - | 51332:8999-9018 | MS.gene07078:CDS | 30.0% | |
| CCATAAATGAGTGAAAATAC+GGG | - | 51332:8998-9017 | MS.gene07078:CDS | 30.0% | |
| GAGGATGAAGTAAATATGTA+TGG | + | 51332:8831-8850 | MS.gene07078:intergenic | 30.0% | |
| GTATATTGCACTTGAGTATT+TGG | - | 51332:12033-12052 | MS.gene07078:intron | 30.0% | |
| GTATTTATCTTTCCTTCCTT+TGG | - | 51332:10318-10337 | MS.gene07078:intron | 30.0% | |
| TATAGTTTGGATCATATGTG+TGG | - | 51332:8422-8441 | MS.gene07078:CDS | 30.0% | |
| TATGATGAAGTCATGCATAT+AGG | - | 51332:8463-8482 | MS.gene07078:intron | 30.0% | |
| TCATGTAGACTTATATGACA+AGG | - | 51332:8361-8380 | MS.gene07078:CDS | 30.0% | |
| TCTAGTCCAATTCATTATGA+AGG | + | 51332:8206-8225 | MS.gene07078:intergenic | 30.0% | |
| TGAAGAAATCACCAAGAAAT+GGG | - | 51332:12335-12354 | MS.gene07078:intron | 30.0% | |
| TGAGAACGTTATATAGAAGT+GGG | + | 51332:8669-8688 | MS.gene07078:intergenic | 30.0% | |
| TGCACAATAATGTATACTAG+TGG | - | 51332:10009-10028 | MS.gene07078:intron | 30.0% | |
| TTCATATTTAGGCTCTTGAT+AGG | - | 51332:12226-12245 | MS.gene07078:CDS | 30.0% | |
| TTGAAACTCATGTAGTAAAG+AGG | + | 51332:11010-11029 | MS.gene07078:intergenic | 30.0% | |
| ! | AAAACATGAGGTGTTAGAAT+CGG | + | 51332:9200-9219 | MS.gene07078:intergenic | 30.0% |
| ! | AAGCTTGTTTATGTTGATGT+AGG | - | 51332:8736-8755 | MS.gene07078:CDS | 30.0% |
| ! | ACCGACAATTATATGGATTT+TGG | - | 51332:10857-10876 | MS.gene07078:intron | 30.0% |
| ! | CAAGGAAAGAAATTTGAGAT+TGG | + | 51332:11083-11102 | MS.gene07078:intergenic | 30.0% |
| ! | TCAAAACAAAAGTTTGAGGT+TGG | + | 51332:11880-11899 | MS.gene07078:intergenic | 30.0% |
| ! | TGTATAAGGTTTGGGTTTAT+GGG | - | 51332:12271-12290 | MS.gene07078:CDS | 30.0% |
| ! | TTCTTGGTGATTTCTTCATT+TGG | + | 51332:12333-12352 | MS.gene07078:intergenic | 30.0% |
| ! | TTGTATAAGGTTTGGGTTTA+TGG | - | 51332:12270-12289 | MS.gene07078:CDS | 30.0% |
| ! | TTTCTCTGTTTTGTGCAATT+AGG | - | 51332:8857-8876 | MS.gene07078:intron | 30.0% |
| ! | TTTCTTTGATGATTGTAGTG+TGG | - | 51332:8242-8261 | MS.gene07078:intron | 30.0% |
| ! | TTTTATGCAGTAAACTTGGT+TGG | - | 51332:10912-10931 | MS.gene07078:CDS | 30.0% |
| !! | AAGGGCTTTGAACAAATAAA+AGG | - | 51332:12790-12809 | MS.gene07078:intron | 30.0% |
| !! | TTTTGTTTGTGATGCTATTG+CGG | - | 51332:7999-8018 | MS.gene07078:intron | 30.0% |
| !!! | TACTTATTTTGTTAGGGGAA+TGG | - | 51332:10077-10096 | MS.gene07078:intron | 30.0% |
| AAACTTGGTTGGATGAAGAA+AGG | - | 51332:10923-10942 | MS.gene07078:CDS | 35.0% | |
| AAAGATAAAGCAACCAGCAT+TGG | - | 51332:9802-9821 | MS.gene07078:intron | 35.0% | |
| AAATCAGCTTCACGATTGAA+AGG | - | 51332:9650-9669 | MS.gene07078:intron | 35.0% | |
| AACAATACTCTTACGAGCAT+AGG | - | 51332:11372-11391 | MS.gene07078:intron | 35.0% | |
| AAGAAATGGGCATACACAAA+TGG | - | 51332:12348-12367 | MS.gene07078:intron | 35.0% | |
| AAGATAAAGCAACCAGCATT+GGG | - | 51332:9803-9822 | MS.gene07078:intron | 35.0% | |
| AAGTGCAATATACTCTCCTT+GGG | + | 51332:12026-12045 | MS.gene07078:intergenic | 35.0% | |
| AATGCTAATAGATCAGCGAA+TGG | + | 51332:10971-10990 | MS.gene07078:intergenic | 35.0% | |
| AATTGTGGTTGTGCTAACAA+CGG | + | 51332:11340-11359 | MS.gene07078:intergenic | 35.0% | |
| AGATCCACATCCATTTGATA+TGG | - | 51332:12822-12841 | MS.gene07078:intron | 35.0% | |
| ATGGATCAAATTGTCCTCAA+TGG | - | 51332:8625-8644 | MS.gene07078:intron | 35.0% | |
| ATGTATACTAGTGGAACAAG+TGG | - | 51332:10018-10037 | MS.gene07078:intron | 35.0% | |
| ATTTCTTTCCTTGGTGAGTT+AGG | - | 51332:11090-11109 | MS.gene07078:intron | 35.0% | |
| ATTTGTGTATGCCCATTTCT+TGG | + | 51332:12349-12368 | MS.gene07078:intergenic | 35.0% | |
| CATATATTATGAGCTTGTGG+TGG | + | 51332:9991-10010 | MS.gene07078:intergenic | 35.0% | |
| CATCTTACTACTACCTTGTA+GGG | - | 51332:9940-9959 | MS.gene07078:intron | 35.0% | |
| CCAAAAACTGTTCTTCTAAC+TGG | + | 51332:10746-10765 | MS.gene07078:intergenic | 35.0% | |
| CGTGTTCGACTAATAATAAC+CGG | - | 51332:11133-11152 | MS.gene07078:intron | 35.0% | |
| CTTTCCATATCAAATGGATG+TGG | + | 51332:12829-12848 | MS.gene07078:intergenic | 35.0% | |
| GAGAAACAAGGTAACACATA+CGG | - | 51332:12452-12471 | MS.gene07078:intron | 35.0% | |
| GAGTCAAAACAACACCTTTA+GGG | + | 51332:10047-10066 | MS.gene07078:intergenic | 35.0% | |
| GTCTGAAAATGATCCTAGTT+GGG | - | 51332:8883-8902 | MS.gene07078:CDS | 35.0% | |
| GTGAGAACGTTATATAGAAG+TGG | + | 51332:8670-8689 | MS.gene07078:intergenic | 35.0% | |
| GTGCATATATTATGAGCTTG+TGG | + | 51332:9994-10013 | MS.gene07078:intergenic | 35.0% | |
| TAGGTTTGACTGAAACTTGT+GGG | - | 51332:11607-11626 | MS.gene07078:intron | 35.0% | |
| TATCCTCAAAACCGTATGTT+GGG | - | 51332:8276-8295 | MS.gene07078:CDS | 35.0% | |
| TCATCTTACTACTACCTTGT+AGG | - | 51332:9939-9958 | MS.gene07078:intron | 35.0% | |
| TCTGAAAATGATCCTAGTTG+GGG | - | 51332:8884-8903 | MS.gene07078:CDS | 35.0% | |
| TCTTCAATCTCTGAACTCAA+CGG | + | 51332:11166-11185 | MS.gene07078:intergenic | 35.0% | |
| TGAGTCAAAACAACACCTTT+AGG | + | 51332:10048-10067 | MS.gene07078:intergenic | 35.0% | |
| TGCACAAAACAGAGAAAACA+GGG | + | 51332:8854-8873 | MS.gene07078:intergenic | 35.0% | |
| TGCATTGAGGGATGATTTAA+TGG | - | 51332:10555-10574 | MS.gene07078:intron | 35.0% | |
| TGTGACAACCGACAATTATA+TGG | - | 51332:10850-10869 | MS.gene07078:intron | 35.0% | |
| TTGAAAAGGTCTATGAAGGT+AGG | - | 51332:10617-10636 | MS.gene07078:CDS | 35.0% | |
| TTGCACAAAACAGAGAAAAC+AGG | + | 51332:8855-8874 | MS.gene07078:intergenic | 35.0% | |
| TTTAGGGAAGGTTAATCCAT+AGG | + | 51332:11054-11073 | MS.gene07078:intergenic | 35.0% | |
| ! | AGACCTTTTCAAAGACTCTA+GGG | + | 51332:10609-10628 | MS.gene07078:intergenic | 35.0% |
| ! | CCAGTTAGAAGAACAGTTTT+TGG | - | 51332:10743-10762 | MS.gene07078:CDS | 35.0% |
| ! | CCCGTATTTTCACTCATTTA+TGG | + | 51332:9001-9020 | MS.gene07078:intergenic | 35.0% |
| ! | GTCTTTGAAAAGGTCTATGA+AGG | - | 51332:10613-10632 | MS.gene07078:CDS | 35.0% |
| ! | TAGACCTTTTCAAAGACTCT+AGG | + | 51332:10610-10629 | MS.gene07078:intergenic | 35.0% |
| ! | TAGGGGAATGGATATTTTCA+TGG | - | 51332:10089-10108 | MS.gene07078:intron | 35.0% |
| ! | TTGTTAACTCAGGGTTTTTG+TGG | + | 51332:11803-11822 | MS.gene07078:intergenic | 35.0% |
| !! | AAATTGTCCTCAATGGATTG+CGG | - | 51332:8632-8651 | MS.gene07078:intron | 35.0% |
| !! | ATCGACTGATTTGATAATGG+AGG | - | 51332:8967-8986 | MS.gene07078:CDS | 35.0% |
| !! | GATTGGTGAAATTTTAGGGA+AGG | + | 51332:11066-11085 | MS.gene07078:intergenic | 35.0% |
| !! | TCGACTGATTTGATAATGGA+GGG | - | 51332:8968-8987 | MS.gene07078:CDS | 35.0% |
| !! | TTACCAAGAGTATCATAGAG+AGG | + | 51332:8791-8810 | MS.gene07078:intergenic | 35.0% |
| !! | TTTGAGTTGCTTGTGAATGA+AGG | - | 51332:10525-10544 | MS.gene07078:intron | 35.0% |
| !! | TTTTTGGCATGCTCTACAAA+CGG | - | 51332:10759-10778 | MS.gene07078:intron | 35.0% |
| !!! | ACGGTTTTGAGGATACTTTT+TGG | + | 51332:8271-8290 | MS.gene07078:intergenic | 35.0% |
| !!! | GAATTTTTGCGTGTTACTTC+TGG | - | 51332:11184-11203 | MS.gene07078:intron | 35.0% |
| AACCATAATTGTGCTCGTGA+CGG | + | 51332:8038-8057 | MS.gene07078:intergenic | 40.0% | |
| AAGAACTCTTCCCAGGAATA+TGG | + | 51332:9835-9854 | MS.gene07078:intergenic | 40.0% | |
| ACATTGTTTGGCATCTTCAG+GGG | - | 51332:11931-11950 | MS.gene07078:CDS | 40.0% | |
| ACTAGAAGAAGTTCCAGAGA+TGG | - | 51332:11707-11726 | MS.gene07078:intron | 40.0% | |
| AGATAAAGCAACCAGCATTG+GGG | - | 51332:9804-9823 | MS.gene07078:intron | 40.0% | |
| AGGTACACAAACCAAGCTAT+GGG | + | 51332:8771-8790 | MS.gene07078:intergenic | 40.0% | |
| ATAGACACAAACACGAGTAC+TGG | + | 51332:11545-11564 | MS.gene07078:intergenic | 40.0% | |
| ATTCCTCAATTGTCCGATCA+AGG | + | 51332:10351-10370 | MS.gene07078:intergenic | 40.0% | |
| CAAGTGCAATATACTCTCCT+TGG | + | 51332:12027-12046 | MS.gene07078:intergenic | 40.0% | |
| CAATTATAGGGCTCACGAAT+TGG | - | 51332:8597-8616 | MS.gene07078:intron | 40.0% | |
| CATGGAACAGTTTGAAGACA+AGG | - | 51332:10107-10126 | MS.gene07078:CDS | 40.0% | |
| CATTTGTAAGAACTCTTCCC+AGG | + | 51332:9842-9861 | MS.gene07078:intergenic | 40.0% | |
| CGTCTGAAAATGATCCTAGT+TGG | - | 51332:8882-8901 | MS.gene07078:CDS | 40.0% | |
| CTAGAAGAAGTTCCAGAGAT+GGG | - | 51332:11708-11727 | MS.gene07078:intron | 40.0% | |
| CTAGGTTTGACTGAAACTTG+TGG | - | 51332:11606-11625 | MS.gene07078:intron | 40.0% | |
| CTGGGAAGAGTTCTTACAAA+TGG | - | 51332:9840-9859 | MS.gene07078:intron | 40.0% | |
| GAAGGATCTAACTGCATTGA+GGG | - | 51332:10543-10562 | MS.gene07078:intron | 40.0% | |
| GACATTGTTTGGCATCTTCA+GGG | - | 51332:11930-11949 | MS.gene07078:CDS | 40.0% | |
| GCACAAAACAGAGAAAACAG+GGG | + | 51332:8853-8872 | MS.gene07078:intergenic | 40.0% | |
| GCATACACAAATGGTTTCGT+GGG | - | 51332:12357-12376 | MS.gene07078:intron | 40.0% | |
| GTACCTCTCTATGATACTCT+TGG | - | 51332:8785-8804 | MS.gene07078:intron | 40.0% | |
| GTATCCTCAAAACCGTATGT+TGG | - | 51332:8275-8294 | MS.gene07078:CDS | 40.0% | |
| GTGAAACCATCCATCTACTA+TGG | + | 51332:11832-11851 | MS.gene07078:intergenic | 40.0% | |
| GTTCGACTAATAATAACCGG+AGG | - | 51332:11136-11155 | MS.gene07078:intron | 40.0% | |
| TAAACATCAAATGCAGGGTC+CGG | - | 51332:9422-9441 | MS.gene07078:intron | 40.0% | |
| TATCCTTGATCGGACAATTG+AGG | - | 51332:10345-10364 | MS.gene07078:CDS | 40.0% | |
| TGAAACCAACACTGTTTGCT+GGG | - | 51332:10581-10600 | MS.gene07078:intron | 40.0% | |
| TGAAGGATCTAACTGCATTG+AGG | - | 51332:10542-10561 | MS.gene07078:intron | 40.0% | |
| TGACATTGTTTGGCATCTTC+AGG | - | 51332:11929-11948 | MS.gene07078:CDS | 40.0% | |
| TGCTACGACCCTATATATTG+TGG | - | 51332:12144-12163 | MS.gene07078:intron | 40.0% | |
| TGTATGTCAAGGCTATGGTA+AGG | - | 51332:11213-11232 | MS.gene07078:intron | 40.0% | |
| TTCAGGTATCAAGAAAGCAG+TGG | - | 51332:10709-10728 | MS.gene07078:CDS | 40.0% | |
| TTGAAACCAACACTGTTTGC+TGG | - | 51332:10580-10599 | MS.gene07078:intron | 40.0% | |
| TTTGTTCAAAGCCCTTAAGC+TGG | + | 51332:12786-12805 | MS.gene07078:intergenic | 40.0% | |
| ! | AGAGGGAAATCAGTTTTCTC+CGG | - | 51332:11774-11793 | MS.gene07078:intron | 40.0% |
| ! | CGTGAAGCTGATTTACAATC+AGG | + | 51332:9644-9663 | MS.gene07078:intergenic | 40.0% |
| ! | CTTTGGCTCATATCCTTGAT+CGG | - | 51332:10335-10354 | MS.gene07078:CDS | 40.0% |
| ! | GCTTTTGTATGTCAAGGCTA+TGG | - | 51332:11208-11227 | MS.gene07078:intron | 40.0% |
| ! | GTAATAATATGGGACTGGTG+CGG | - | 51332:7971-7990 | MS.gene07078:intron | 40.0% |
| ! | TCTGGTGCTTTTGTATGTCA+AGG | - | 51332:11202-11221 | MS.gene07078:intron | 40.0% |
| ! | TGGAGTTTCTTTTCCCTACA+AGG | + | 51332:9956-9975 | MS.gene07078:intergenic | 40.0% |
| ! | TGGGGTCACTCTTCATATTT+TGG | - | 51332:8902-8921 | MS.gene07078:CDS | 40.0% |
| ! | TTTTCAACGCACCAGCTTAA+GGG | - | 51332:12772-12791 | MS.gene07078:intron | 40.0% |
| !! | GAGAAATTGGTGTCAATGCT+AGG | + | 51332:9067-9086 | MS.gene07078:intergenic | 40.0% |
| !! | GCGTGAATTTGTTGATGGAA+AGG | - | 51332:8302-8321 | MS.gene07078:CDS | 40.0% |
| ACCATAATTGTGCTCGTGAC+GGG | + | 51332:8037-8056 | MS.gene07078:intergenic | 45.0% | |
| AGACATATCTCGCCACATGA+AGG | + | 51332:11753-11772 | MS.gene07078:intergenic | 45.0% | |
| AGAGGATTGTAACCCATCTC+TGG | + | 51332:11723-11742 | MS.gene07078:intergenic | 45.0% | |
| AGTTAGGTCAAAGCTCGGTT+AGG | - | 51332:11106-11125 | MS.gene07078:intron | 45.0% | |
| ATATGGCTTAACCCCAATGC+TGG | + | 51332:9818-9837 | MS.gene07078:intergenic | 45.0% | |
| ATGTGCATGCTTGGTACTGT+TGG | - | 51332:11657-11676 | MS.gene07078:intron | 45.0% | |
| ATTCACGCCATCCCAACATA+CGG | + | 51332:8290-8309 | MS.gene07078:intergenic | 45.0% | |
| CAAAACAGAGAAAACAGGGG+AGG | + | 51332:8850-8869 | MS.gene07078:intergenic | 45.0% | |
| CAAGGATATGAGCCAAAGGA+AGG | + | 51332:10333-10352 | MS.gene07078:intergenic | 45.0% | |
| CCAAGCATGCACATTTCATC+AGG | + | 51332:11651-11670 | MS.gene07078:intergenic | 45.0% | |
| CCTGATGAAATGTGCATGCT+TGG | - | 51332:11648-11667 | MS.gene07078:intron | 45.0% | |
| CGATCAAGGATATGAGCCAA+AGG | + | 51332:10337-10356 | MS.gene07078:intergenic | 45.0% | |
| CTCAAAACCGTATGTTGGGA+TGG | - | 51332:8280-8299 | MS.gene07078:CDS | 45.0% | |
| CTGCATGAACATATACCCCA+TGG | + | 51332:10408-10427 | MS.gene07078:intergenic | 45.0% | |
| GAGGTACACAAACCAAGCTA+TGG | + | 51332:8772-8791 | MS.gene07078:intergenic | 45.0% | |
| GGCATACACAAATGGTTTCG+TGG | - | 51332:12356-12375 | MS.gene07078:intron | 45.0% | |
| GGCTCACGAATTGGAGTTTA+TGG | - | 51332:8606-8625 | MS.gene07078:intron | 45.0% | |
| GTAGATGGATGGTTTCACAC+AGG | - | 51332:11834-11853 | MS.gene07078:intron | 45.0% | |
| GTGGCGAGATATGTCTTAGA+GGG | - | 51332:11757-11776 | MS.gene07078:intron | 45.0% | |
| GTTGACTGCTGAGAGAAACA+AGG | - | 51332:12440-12459 | MS.gene07078:CDS | 45.0% | |
| TATGAAGAGTGACCCCAACT+AGG | + | 51332:8899-8918 | MS.gene07078:intergenic | 45.0% | |
| TGGGGTTAAGCCATATTCCT+GGG | - | 51332:9822-9841 | MS.gene07078:intron | 45.0% | |
| TGGTGAGTTAGGTCAAAGCT+CGG | - | 51332:11101-11120 | MS.gene07078:intron | 45.0% | |
| TGTGGCGAGATATGTCTTAG+AGG | - | 51332:11756-11775 | MS.gene07078:intron | 45.0% | |
| TTGGGGTTAAGCCATATTCC+TGG | - | 51332:9821-9840 | MS.gene07078:intron | 45.0% | |
| ! | AGCTTTGACCTAACTCACCA+AGG | + | 51332:11101-11120 | MS.gene07078:intergenic | 45.0% |
| ! | ATCTGTTGGCTACTACCATG+GGG | - | 51332:10390-10409 | MS.gene07078:CDS | 45.0% |
| ! | ATGAGCTTGTGGTGGTGAAA+TGG | + | 51332:9983-10002 | MS.gene07078:intergenic | 45.0% |
| ! | CATCCCAACATACGGTTTTG+AGG | + | 51332:8282-8301 | MS.gene07078:intergenic | 45.0% |
| ! | CATCTGTTGGCTACTACCAT+GGG | - | 51332:10389-10408 | MS.gene07078:CDS | 45.0% |
| ! | CTTTTCAACGCACCAGCTTA+AGG | - | 51332:12771-12790 | MS.gene07078:intron | 45.0% |
| ! | GAAACCAACACTGTTTGCTG+GGG | - | 51332:10582-10601 | MS.gene07078:intron | 45.0% |
| ! | GGTCCCTAGAGTCTTTGAAA+AGG | - | 51332:10603-10622 | MS.gene07078:CDS | 45.0% |
| ! | TGTGGTGGTGAAATGGTTGA+TGG | + | 51332:9976-9995 | MS.gene07078:intergenic | 45.0% |
| ! | TTCCATAAGGGTGCATCTGT+TGG | - | 51332:10376-10395 | MS.gene07078:CDS | 45.0% |
| !! | GAGATGGGTTACAATCCTCT+TGG | - | 51332:11723-11742 | MS.gene07078:intron | 45.0% |
| !! | GGATGGCGTGAATTTGTTGA+TGG | - | 51332:8297-8316 | MS.gene07078:CDS | 45.0% |
| !!! | ACGGTTTTAAAGTGCAGCTG+TGG | - | 51332:12118-12137 | MS.gene07078:intron | 45.0% |
| !! | TAAAAATAAAGAAAAATTTA+AGG | + | 51332:9037-9056 | MS.gene07078:intergenic | 5.0% |
| !!! | ATATTTTAAAATTATTAACA+CGG | - | 51332:11498-11517 | MS.gene07078:intron | 5.0% |
| !!! | ATTTTTAATTACTTATTTAT+CGG | - | 51332:9350-9369 | MS.gene07078:intron | 5.0% |
| !!! | TATTTTATTTTATTATAGTT+TGG | - | 51332:8409-8428 | MS.gene07078:CDS | 5.0% |
| ACCCGTCACGAGCACAATTA+TGG | - | 51332:8033-8052 | MS.gene07078:intron | 50.0% | |
| AGCCAACAGATGCACCCTTA+TGG | + | 51332:10381-10400 | MS.gene07078:intergenic | 50.0% | |
| CCACATGAAGGAGTTCCAAG+AGG | + | 51332:11741-11760 | MS.gene07078:intergenic | 50.0% | |
| CCTCTTGGAACTCCTTCATG+TGG | - | 51332:11738-11757 | MS.gene07078:intron | 50.0% | |
| CTCTTACGAGCATAGGACTG+AGG | - | 51332:11379-11398 | MS.gene07078:intron | 50.0% | |
| GGAACAAGTGGAGACCCTAA+AGG | - | 51332:10030-10049 | MS.gene07078:intron | 50.0% | |
| TAGGTCAAAGCTCGGTTAGG+AGG | - | 51332:11109-11128 | MS.gene07078:intron | 50.0% | |
| TCCATTGCCGCAATCCATTG+AGG | + | 51332:8642-8661 | MS.gene07078:intergenic | 50.0% | |
| TGTGGTTGTGCTAACAACGG+AGG | + | 51332:11337-11356 | MS.gene07078:intergenic | 50.0% | |
| TTGGCATCTTCAGGGGACAT+AGG | - | 51332:11938-11957 | MS.gene07078:CDS | 50.0% | |
| ! | CTCAGGGTTTTTGTGGTAGC+CGG | + | 51332:11796-11815 | MS.gene07078:intergenic | 50.0% |
| ! | GCATCTGTTGGCTACTACCA+TGG | - | 51332:10388-10407 | MS.gene07078:CDS | 50.0% |
| !! | TCAATGGATTGCGGCAATGG+AGG | - | 51332:8641-8660 | MS.gene07078:CDS | 50.0% |
| !! | TCCTCAATGGATTGCGGCAA+TGG | - | 51332:8638-8657 | MS.gene07078:intron | 50.0% |
| !!! | GTGCTCGTGACGGGTTTTAA+AGG | + | 51332:8028-8047 | MS.gene07078:intergenic | 50.0% |
| GGTTCAGCTCTACGTGCATC+TGG | - | 51332:8484-8503 | MS.gene07078:intron | 55.0% | |
| TGAACTCAACGGTGCACCTC+CGG | + | 51332:11155-11174 | MS.gene07078:intergenic | 55.0% | |
| GGGACCCCAGCAAACAGTGT+TGG | + | 51332:10589-10608 | MS.gene07078:intergenic | 60.0% | |
| !! | GGCTTGTTGCGCCCATAGCT+TGG | - | 51332:8757-8776 | MS.gene07078:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51332 | gene | 7824 | 12906 | 7824 | ID=MS.gene07078 |
| 51332 | mRNA | 7824 | 12906 | 7824 | ID=MS.gene07078.t1;Parent=MS.gene07078 |
| 51332 | exon | 12891 | 12906 | 12891 | ID=MS.gene07078.t1.exon1;Parent=MS.gene07078.t1 |
| 51332 | CDS | 12891 | 12906 | 12891 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 12407 | 12470 | 12407 | ID=MS.gene07078.t1.exon2;Parent=MS.gene07078.t1 |
| 51332 | CDS | 12407 | 12470 | 12407 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 12214 | 12303 | 12214 | ID=MS.gene07078.t1.exon3;Parent=MS.gene07078.t1 |
| 51332 | CDS | 12214 | 12303 | 12214 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 12068 | 12124 | 12068 | ID=MS.gene07078.t1.exon4;Parent=MS.gene07078.t1 |
| 51332 | CDS | 12068 | 12124 | 12068 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 11924 | 11972 | 11924 | ID=MS.gene07078.t1.exon5;Parent=MS.gene07078.t1 |
| 51332 | CDS | 11924 | 11972 | 11924 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 11216 | 11292 | 11216 | ID=MS.gene07078.t1.exon6;Parent=MS.gene07078.t1 |
| 51332 | CDS | 11216 | 11292 | 11216 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 11059 | 11098 | 11059 | ID=MS.gene07078.t1.exon7;Parent=MS.gene07078.t1 |
| 51332 | CDS | 11059 | 11098 | 11059 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 10869 | 10963 | 10869 | ID=MS.gene07078.t1.exon8;Parent=MS.gene07078.t1 |
| 51332 | CDS | 10869 | 10963 | 10869 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 10602 | 10769 | 10602 | ID=MS.gene07078.t1.exon9;Parent=MS.gene07078.t1 |
| 51332 | CDS | 10602 | 10769 | 10602 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 10319 | 10429 | 10319 | ID=MS.gene07078.t1.exon10;Parent=MS.gene07078.t1 |
| 51332 | CDS | 10319 | 10429 | 10319 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 10096 | 10183 | 10096 | ID=MS.gene07078.t1.exon11;Parent=MS.gene07078.t1 |
| 51332 | CDS | 10096 | 10183 | 10096 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 9950 | 10016 | 9950 | ID=MS.gene07078.t1.exon12;Parent=MS.gene07078.t1 |
| 51332 | CDS | 9950 | 10016 | 9950 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 9733 | 9808 | 9733 | ID=MS.gene07078.t1.exon13;Parent=MS.gene07078.t1 |
| 51332 | CDS | 9733 | 9808 | 9733 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 9501 | 9618 | 9501 | ID=MS.gene07078.t1.exon14;Parent=MS.gene07078.t1 |
| 51332 | CDS | 9501 | 9618 | 9501 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 8875 | 9120 | 8875 | ID=MS.gene07078.t1.exon15;Parent=MS.gene07078.t1 |
| 51332 | CDS | 8875 | 9120 | 8875 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 8640 | 8779 | 8640 | ID=MS.gene07078.t1.exon16;Parent=MS.gene07078.t1 |
| 51332 | CDS | 8640 | 8779 | 8640 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 8269 | 8451 | 8269 | ID=MS.gene07078.t1.exon17;Parent=MS.gene07078.t1 |
| 51332 | CDS | 8269 | 8451 | 8269 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| 51332 | exon | 7824 | 7943 | 7824 | ID=MS.gene07078.t1.exon18;Parent=MS.gene07078.t1 |
| 51332 | CDS | 7824 | 7943 | 7824 | ID=cds.MS.gene07078.t1;Parent=MS.gene07078.t1 |
| Gene Sequence |
| Protein sequence |
