AlfalfaGEDB | MS.gene070961

M. sativa cultivar XinJiangDaYe / MS.gene070961

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070961.t1	XP_013469751.1	94.5	146	7	1	1	145	1	146	1.10E-65	259.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070961.t1	P11432	70.1	157	34	2	1	145	1	156	9.6e-50	197.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070961.t1	A0A072VP35	94.5	146	7	1	1	145	1	146	8.1e-66	259.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052469	MS.gene070961	0.838793	2.33E-57	-1.69E-46
MS.gene055539	MS.gene070961	0.815918	7.23E-52	-1.69E-46
MS.gene059717	MS.gene070961	0.80948	1.85E-50	-1.69E-46
MS.gene061154	MS.gene070961	0.800121	1.67E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070961.t1	MTR_1g102830	96.800	125	4	0	21	145	22	146	8.45e-87	251
MS.gene070961.t1	MTR_1g102810	90.698	129	12	0	17	145	14	142	2.02e-83	243
MS.gene070961.t1	MTR_1g102780	76.978	139	18	1	21	145	22	160	3.42e-71	212
MS.gene070961.t1	MTR_1g102570	75.912	137	21	1	21	145	22	158	1.25e-69	208
MS.gene070961.t1	MTR_1g102800	75.735	136	21	1	22	145	22	157	3.46e-69	207

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070961.t1	AT3G22840	43.125	160	71	4	1	145	1	155	2.26e-34	119
MS.gene070961.t1	AT4G14690	48.462	130	54	2	28	144	23	152	3.43e-32	113

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Find 39 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTCCGTTGAACCTTTC+AGG	0.218116	1.4:-79519625	None:intergenic
AACGGAAGGTTGGCCATGAT+TGG	0.403068	1.4:+79519637	MS.gene070961:CDS
AAGCTAGGCATATACACAGA+AGG	0.589450	1.4:-79519112	None:intergenic
ACACTTGTATACAAGAACCA+TGG	0.618963	1.4:-79519733	None:intergenic
AGCTAGGCATATACACAGAA+GGG	0.613758	1.4:-79519111	None:intergenic
AGGGCAGAAAGAGCAACCAA+AGG	0.630670	1.4:+79519373	MS.gene070961:CDS
CACAAAGTTTACGGATTTGA+TGG	0.311110	1.4:+79519585	MS.gene070961:CDS
CACCTGAAAGGTTCAACGGA+AGG	0.608089	1.4:+79519623	MS.gene070961:CDS
CACTTGTATACAAGAACCAT+GGG	0.556587	1.4:-79519732	None:intergenic
CAGAAGGGATGTTGTTAAAT+TGG	0.214729	1.4:-79519096	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCTTTACATTATTCAGGAA+GGG	+	chr1.4:79519354-79519373	MS.gene070961:intron	30.0%
TCTCTTTACATTATTCAGGA+AGG	+	chr1.4:79519353-79519372	MS.gene070961:intron	30.0%
TTGCATGACTATAATCTTCT+TGG	-	chr1.4:79519486-79519505	None:intergenic	30.0%
TTTATTACTATGCTCACCTT+TGG	-	chr1.4:79519431-79519450	None:intergenic	30.0%
ACACTTGTATACAAGAACCA+TGG	-	chr1.4:79519736-79519755	None:intergenic	35.0%
AGACATTGTTATGGATTCTC+CGG	-	chr1.4:79519336-79519355	None:intergenic	35.0%
ATCTATGGCTGAGGTAATTA+AGG	+	chr1.4:79519162-79519181	MS.gene070961:intron	35.0%
CACAAAGTTTACGGATTTGA+TGG	+	chr1.4:79519585-79519604	MS.gene070961:CDS	35.0%
CACTTGTATACAAGAACCAT+GGG	-	chr1.4:79519735-79519754	None:intergenic	35.0%
CAGAAGGGATGTTGTTAAAT+TGG	-	chr1.4:79519099-79519118	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	79519025	79519804	79519025	ID=MS.gene070961
chr1.4	mRNA	79519025	79519804	79519025	ID=MS.gene070961.t1;Parent=MS.gene070961
chr1.4	exon	79519025	79519174	79519025	ID=MS.gene070961.t1.exon1;Parent=MS.gene070961.t1
chr1.4	CDS	79519025	79519174	79519025	ID=cds.MS.gene070961.t1;Parent=MS.gene070961.t1
chr1.4	exon	79519371	79519433	79519371	ID=MS.gene070961.t1.exon2;Parent=MS.gene070961.t1
chr1.4	CDS	79519371	79519433	79519371	ID=cds.MS.gene070961.t1;Parent=MS.gene070961.t1
chr1.4	exon	79519580	79519804	79519580	ID=MS.gene070961.t1.exon3;Parent=MS.gene070961.t1
chr1.4	CDS	79519580	79519804	79519580	ID=cds.MS.gene070961.t1;Parent=MS.gene070961.t1

Gene Sequence

>MS.gene070961

ATGGCTGTATCATCTTATCAATCTATCCTGTCAAGCTCCATGACCAGCATTTCTAGCATGCCTAGAGTTAACCAATTTAACAACATCCCTTCTGTGTATATGCCTAGCTTCAGAAGGAATGCTAGCTTGAAAGTTCGATCTATGGCTGAGGTAATTAAGGTTTATATATCAAACAAATATTATGGTCATGTATATAGTGTTTGTTCATGCATATTTAATTTCTATACATGGAAAAACCACCATATCAAACACGTTTATGATTTATATTTATGAAATATGTACAACAATTGTCGTTGATTTTGTAAATTCCGGAGAATCCATAACAATGTCTCTTTACATTATTCAGGAAGGGCAGAAAGAGCAACCAAAGGTGACACCGCAGCCTGCCTCTACTACTCGTTCACCAAAGGTGAGCATAGTAATAAAAAAATTACAACTTTCTTTTTTCTAAATTCTGTCCAAGAAGATTATAGTCATGCAAAGTATTGATTTCGGTCAAAATTTATGAGACATTTTTTATGAATGAATAATCATGATATCATTATATAATGGCAGATAAGCACAAAGTTTACGGATTTGATGGCTTTTGGTGGGCCAGCACCTGAAAGGTTCAACGGAAGGTTGGCCATGATTGGTTTTGTATCTGCAATGGGGGTGGAATTAGCAAAAGGGCAGGGTTTGTTCGATCAAATATCTGGTGGTGGAATCCCATGGTTCTTGTATACAAGTGTGTTGTTGACAGTTGCTTCTTTGGTTCCGTTATTTGAAGGTGTTAGTTAG

Protein sequence

>MS.gene070961.t1

MAVSSYQSILSSSMTSISSMPRVNQFNNIPSVYMPSFRRNASLKVRSMAEEGQKEQPKVTPQPASTTRSPKISTKFTDLMAFGGPAPERFNGRLAMIGFVSAMGVELAKGQGLFDQISGGGIPWFLYTSVLLTVASLVPLFEGVS