AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052469


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052469.t1 MTR_6g088500 98.835 515 5 1 1 515 1 514 0.0 1040
MS.gene052469.t1 MTR_6g088500 98.458 389 5 1 1 389 1 388 0.0 778
MS.gene052469.t1 MTR_8g044240 45.161 248 116 4 181 423 71 303 6.38e-62 206
MS.gene052469.t1 MTR_4g058810 25.463 216 146 4 173 387 5 206 2.07e-14 73.9
MS.gene052469.t1 MTR_4g058840 25.000 216 147 4 173 387 5 206 4.32e-14 73.2
MS.gene052469.t1 MTR_4g058820 25.000 216 147 4 173 387 5 206 4.32e-14 73.2
MS.gene052469.t1 MTR_7g105590 27.723 202 120 5 185 383 14 192 1.02e-13 70.5
MS.gene052469.t1 MTR_3g086210 26.923 234 141 10 165 387 31 245 1.51e-13 72.0
MS.gene052469.t1 MTR_1g051165 22.581 217 156 3 173 387 8 214 9.40e-12 66.2
MS.gene052469.t1 MTR_7g063360 26.829 205 129 6 185 388 22 206 1.00e-11 65.9
MS.gene052469.t1 MTR_3g068085 24.303 251 161 8 185 434 21 243 1.15e-11 65.9
MS.gene052469.t1 MTR_3g086190 25.541 231 140 8 170 387 29 240 5.68e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052469.t1 AT4G13250 68.093 514 144 5 3 515 2 496 0.0 696
MS.gene052469.t1 AT4G13250 67.704 514 144 6 3 515 2 494 0.0 687
MS.gene052469.t1 AT5G04900 42.308 286 137 6 181 454 79 348 3.55e-64 213
MS.gene052469.t1 AT1G24360 27.273 209 123 6 184 387 79 263 5.24e-14 73.6
MS.gene052469.t1 AT1G10310 30.622 209 124 4 182 390 18 205 1.27e-13 71.2
MS.gene052469.t1 AT5G65205 29.665 209 121 6 184 391 11 194 2.85e-13 70.9
MS.gene052469.t1 AT3G46170 22.672 247 171 4 173 416 20 249 3.30e-13 70.9
MS.gene052469.t1 AT3G55310 23.171 246 171 4 173 416 11 240 8.08e-13 69.3
MS.gene052469.t1 AT3G55290 22.672 247 173 4 172 416 10 240 1.66e-12 68.6
MS.gene052469.t1 AT3G55290 22.672 247 173 4 172 416 11 241 1.75e-12 68.6
MS.gene052469.t1 AT1G63380 23.853 218 148 5 173 387 16 218 2.73e-12 67.8
MS.gene052469.t1 AT1G63380 23.853 218 148 5 173 387 9 211 2.88e-12 67.8
MS.gene052469.t1 AT1G63380 23.853 218 148 5 173 387 13 215 3.33e-12 67.8
MS.gene052469.t1 AT1G63380 23.853 218 148 5 173 387 11 213 3.35e-12 67.4
MS.gene052469.t1 AT4G13180 27.273 231 142 8 182 406 16 226 3.48e-12 67.4
MS.gene052469.t1 AT5G06060 25.581 258 155 8 182 434 12 237 1.71e-11 65.1
MS.gene052469.t1 AT1G62610 22.936 218 150 4 173 387 7 209 6.60e-11 63.5
MS.gene052469.t1 AT1G62610 22.936 218 150 4 173 387 8 210 7.25e-11 63.5
MS.gene052469.t1 AT1G62610 22.936 218 150 4 173 387 9 211 7.88e-11 63.5
MS.gene052469.t1 AT1G62610 22.936 218 150 5 173 387 13 215 8.74e-11 63.2

Find 122 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGTTCTAGCAACAGTTTC+AGG 0.185260 6.1:-75842707 None:intergenic
GCGCGGGAGTTTCTTCTTTC+GGG 0.199031 6.1:+75840685 MS.gene052469:CDS
TGAAAGTTCAAAGGGAAAAT+AGG 0.241615 6.1:+75839272 MS.gene052469:CDS
TATTGAACATTTGCTTGTTT+TGG 0.252873 6.1:-75842670 None:intergenic
GGCGCGGGAGTTTCTTCTTT+CGG 0.255877 6.1:+75840684 MS.gene052469:CDS
AATATAGACAAGCTGTTGTT+AGG 0.270443 6.1:+75839359 MS.gene052469:CDS
CCACGGATGCGAGTCGTTAA+AGG 0.285650 6.1:+75842734 MS.gene052469:CDS
AACAAGATTGCTGTACAAAT+TGG 0.289230 6.1:+75840015 MS.gene052469:intron
TTCAAAGGGAAAATAGGTTT+TGG 0.291917 6.1:+75839278 MS.gene052469:CDS
AACTTGGTTATATTGACATT+TGG 0.298895 6.1:+75841009 MS.gene052469:CDS
GTAGATTGTCTCGACAAATT+TGG 0.300093 6.1:+75841668 MS.gene052469:intron
AATTCTTCATCTGGGGTGTT+TGG 0.300534 6.1:+75839136 MS.gene052469:CDS
AACAATGCTGGAACAAATAA+AGG 0.317086 6.1:+75841439 MS.gene052469:CDS
GGTAGCTCAAATTCTTCATC+TGG 0.318654 6.1:+75839127 MS.gene052469:CDS
GCCAGGCCACATATTTAATA+TGG 0.321841 6.1:+75841746 MS.gene052469:CDS
CCGCGTAATGTTGTCATAAC+TGG 0.325117 6.1:+75840379 MS.gene052469:CDS
CTTTCTCAAGCAAAAGTTGT+AGG 0.337639 6.1:+75840924 MS.gene052469:CDS
AAGCAGACCGACTTAGAAAC+TGG 0.348050 6.1:+75843419 MS.gene052469:CDS
ACTTGGTTATATTGACATTT+GGG 0.349608 6.1:+75841010 MS.gene052469:CDS
AATAAACATAAGCTTAGAAA+TGG 0.354527 6.1:+75839100 MS.gene052469:CDS
GGTTGATGAAGTTCTATCTA+AGG 0.354535 6.1:+75839381 MS.gene052469:CDS
CATAAGCTTAGAAATGGATT+TGG 0.356297 6.1:+75839106 MS.gene052469:CDS
TCATAATACGCATGGCTTCT+CGG 0.361034 6.1:-75841710 None:intergenic
AATATGGACGGTGCAGGTTC+CGG 0.376327 6.1:+75841762 MS.gene052469:CDS
GTGATCCATGAAATTGTCTA+AGG 0.376708 6.1:-75842332 None:intergenic
TCCTAGAATCTTGCTTGCCT+TGG 0.382251 6.1:+75842787 MS.gene052469:CDS
AACTTTGCGGTCAGCGAACT+TGG 0.384243 6.1:+75840993 MS.gene052469:CDS
CACAGTCGCTTGCACAGACT+CGG 0.393498 6.1:-75840838 None:intergenic
TGCGGCCTTAGACAATTTCA+TGG 0.401293 6.1:+75842327 MS.gene052469:CDS
GCATCAGGATATTATGTTCC+AGG 0.402455 6.1:-75843571 None:intergenic
CATAATACGCATGGCTTCTC+GGG 0.402644 6.1:-75841709 None:intergenic
GTCAGATGGATGCACTGATA+TGG 0.403741 6.1:+75840278 MS.gene052469:CDS
GTGTGCAGTACAAGGGGATT+GGG 0.408179 6.1:+75840652 MS.gene052469:intron
TGGCTTGGAGGAGTTATCAT+TGG 0.408578 6.1:+75840307 MS.gene052469:CDS
GGACAATGATAGGTGCTAAC+TGG 0.410970 6.1:+75840329 MS.gene052469:CDS
GTTTCTAAGTCGGTCTGCTT+CGG 0.419711 6.1:-75843416 None:intergenic
TGCTTGCCTTGGTCACTGCT+TGG 0.422221 6.1:+75842798 MS.gene052469:CDS
ACCAAGGCAAGCAAGATTCT+AGG 0.424125 6.1:-75842788 None:intergenic
GCAATTGGATTTCAGATGTC+AGG 0.424710 6.1:+75840078 MS.gene052469:CDS
ATATGTGGCCTGGCTTGGTT+TGG 0.425470 6.1:-75841737 None:intergenic
CCTTGGTCACTGCTTGGTTA+CGG 0.429312 6.1:+75842804 MS.gene052469:CDS
CTTGGTTACGGCGAGGTCGC+TGG 0.429812 6.1:+75842816 MS.gene052469:CDS
AGGAGGAGTCAAGTAATTGA+TGG 0.430041 6.1:-75842768 None:intergenic
ATTAAATATGTGGCCTGGCT+TGG 0.433257 6.1:-75841742 None:intergenic
AAGGGGATTGGGCAAAGCTT+TGG 0.434610 6.1:+75840663 MS.gene052469:CDS
GGCTTGGAGGAGTTATCATT+GGG 0.441757 6.1:+75840308 MS.gene052469:CDS
ACTGGTGTCATCCTTGCAAT+TGG 0.445337 6.1:+75840063 MS.gene052469:CDS
TGTGTGCAGTACAAGGGGAT+TGG 0.447496 6.1:+75840651 MS.gene052469:intron
GTTATCATTGGGACAATGAT+AGG 0.449531 6.1:+75840319 MS.gene052469:CDS
TCAGAGATTGGCAAACTTTG+CGG 0.451337 6.1:+75840980 MS.gene052469:CDS
ATGCGAGTCGTTAAAGGAAC+TGG 0.451935 6.1:+75842740 MS.gene052469:CDS
GTAGCTCAAATTCTTCATCT+GGG 0.461951 6.1:+75839128 MS.gene052469:CDS
GGCTAATGATGTTCAGAGAT+TGG 0.478323 6.1:+75840968 MS.gene052469:CDS
ATATGGTATAGTTGGCTTGG+AGG 0.479095 6.1:+75840295 MS.gene052469:CDS
ATATAGACAAGCTGTTGTTA+GGG 0.488721 6.1:+75839360 MS.gene052469:CDS
ACAGTCGCTTGCACAGACTC+GGG 0.489637 6.1:-75840837 None:intergenic
AGATGGTGGTGGTGATTTGA+AGG 0.492229 6.1:+75839216 MS.gene052469:CDS
AGCACTAGCAGCAATTTGCC+TGG 0.492616 6.1:+75843553 MS.gene052469:CDS
AAATGAAGTGAAAGTTCAAA+GGG 0.494750 6.1:+75839264 MS.gene052469:CDS
ATGAGAAACCAAACCAAGCC+AGG 0.506303 6.1:+75841729 MS.gene052469:CDS
CTGATATGGTATAGTTGGCT+TGG 0.508323 6.1:+75840292 MS.gene052469:CDS
ATATTTAATATGGACGGTGC+AGG 0.513940 6.1:+75841756 MS.gene052469:CDS
GAGTGCAAGCGATCGAAAGT+AGG 0.517173 6.1:+75842363 MS.gene052469:CDS
CACCGTCCATATTAAATATG+TGG 0.518027 6.1:-75841752 None:intergenic
ATTGGGCAAAGCTTTGGCGC+GGG 0.519439 6.1:+75840669 MS.gene052469:CDS
CCATGCCTGGAGATGCTGTA+TGG 0.520734 6.1:-75842389 None:intergenic
CAGTGACGAAGATATCAAAC+AGG 0.521442 6.1:+75841483 MS.gene052469:CDS
AAAATGAAGTGAAAGTTCAA+AGG 0.526093 6.1:+75839263 MS.gene052469:CDS
CATTTCCATTGCATCGGTGA+AGG 0.528155 6.1:-75843464 None:intergenic
GAAGGCATTGCCAATGCAGT+TGG 0.529622 6.1:+75840885 MS.gene052469:CDS
AGTTCTGTGAGAACCATGCC+TGG 0.533618 6.1:-75842402 None:intergenic
CAGAGGTGTGCTAGACCCTC+CGG 0.534337 6.1:-75841781 None:intergenic
AGGTGCTAACTGGGTGTTGG+AGG 0.536195 6.1:+75840339 MS.gene052469:CDS
CAAAGATGAACCAACTGCAT+TGG 0.539792 6.1:-75840895 None:intergenic
ATGCACTGATATGGTATAGT+TGG 0.541778 6.1:+75840287 MS.gene052469:CDS
TGTTTATTCAAATTACACTC+TGG 0.542244 6.1:-75839085 None:intergenic
ACTCAACAGATAAACAATGC+TGG 0.542977 6.1:+75841427 MS.gene052469:intron
TGTGTACATTTCCATTGCAT+CGG 0.543502 6.1:-75843470 None:intergenic
TTTCGGCCCAGTTTCTAAGT+CGG 0.543609 6.1:-75843426 None:intergenic
TCCATATTAAATATGTGGCC+TGG 0.544104 6.1:-75841747 None:intergenic
AGAGCTTGAGGAAAATCTAA+AGG 0.554658 6.1:+75840863 MS.gene052469:CDS
CATTGCTTGTGATGTTTGTG+AGG 0.557227 6.1:+75840947 MS.gene052469:CDS
TTGGTTTCTCATAATACGCA+TGG 0.557467 6.1:-75841718 None:intergenic
ATTTCATGGATCACTATTGA+CGG 0.560581 6.1:+75842341 MS.gene052469:CDS
GGTGTCCATACAGCATCTCC+AGG 0.560814 6.1:+75842384 MS.gene052469:CDS
AGGGCTTTCAAGAGTGAAGA+TGG 0.562950 6.1:+75839199 MS.gene052469:CDS
GATTGGGCAAAGCTTTGGCG+CGG 0.566369 6.1:+75840668 MS.gene052469:CDS
AGGTCGCTGGTTTGATGATG+AGG 0.567807 6.1:+75842829 MS.gene052469:CDS
CCTTTAACGACTCGCATCCG+TGG 0.571537 6.1:-75842734 None:intergenic
TTGGAGGATTATTGTCGCGA+AGG 0.575387 6.1:+75840355 MS.gene052469:CDS
ATGGACGGTGCAGGTTCCGG+AGG 0.575972 6.1:+75841765 MS.gene052469:CDS
CAGTCGCTTGCACAGACTCG+GGG 0.585274 6.1:-75840836 None:intergenic
GACAATGATAGGTGCTAACT+GGG 0.586174 6.1:+75840330 MS.gene052469:CDS
CTTGAGGAAAATCTAAAGGA+AGG 0.588050 6.1:+75840867 MS.gene052469:CDS
GATAGGTGCTAACTGGGTGT+TGG 0.588306 6.1:+75840336 MS.gene052469:CDS
TCGTCACTGAATTGAAGCAA+TGG 0.589388 6.1:-75841469 None:intergenic
CGGTGAAGGAAAACCGTGCA+CGG 0.598757 6.1:-75843450 None:intergenic
TAGCTCAAATTCTTCATCTG+GGG 0.599158 6.1:+75839129 MS.gene052469:CDS
TTGCTAGAACATTAGTTCCA+CGG 0.600648 6.1:+75842717 MS.gene052469:CDS
TGAAGGTGGAGATAGTCAGA+TGG 0.600721 6.1:+75840264 MS.gene052469:intron
AGCGACTGTGAAAGAGCTTG+AGG 0.601464 6.1:+75840851 MS.gene052469:CDS
GGCCACATATTTAATATGGA+CGG 0.602083 6.1:+75841750 MS.gene052469:CDS
CCATACAGCATCTCCAGGCA+TGG 0.604098 6.1:+75842389 MS.gene052469:CDS
GCATGGCTTCTCGGGTACAA+AGG 0.608231 6.1:-75841701 None:intergenic
ATTGTCTCGACAAATTTGGT+CGG 0.608484 6.1:+75841672 MS.gene052469:CDS
ACATCTGAAATCCAATTGCA+AGG 0.608628 6.1:-75840074 None:intergenic
GATGACACCAGTGCTCATCA+TGG 0.614134 6.1:-75840052 None:intergenic
ACTGGGCCGAAAACCGTGCA+CGG 0.614584 6.1:+75843437 MS.gene052469:CDS
AGCTATGGTTCTACAAAATG+CGG 0.627231 6.1:+75842309 MS.gene052469:intron
ATTGTGACCATGATGAGCAC+TGG 0.627363 6.1:+75840045 MS.gene052469:CDS
AATACTCACACGGCTGTCAG+AGG 0.628482 6.1:-75841798 None:intergenic
CCAGTTATGACAACATTACG+CGG 0.634490 6.1:-75840379 None:intergenic
GTCACTGCTTGGTTACGGCG+AGG 0.648939 6.1:+75842809 MS.gene052469:CDS
AGCAGACCGACTTAGAAACT+GGG 0.653481 6.1:+75843420 MS.gene052469:CDS
GTAATGTTGTCATAACTGGA+AGG 0.656772 6.1:+75840383 MS.gene052469:CDS
TGGACGGTGCAGGTTCCGGA+GGG 0.657750 6.1:+75841766 MS.gene052469:CDS
CCGTAACCAAGCAGTGACCA+AGG 0.660846 6.1:-75842804 None:intergenic
AAATGTACACAGAGAACACA+TGG 0.664446 6.1:+75843482 MS.gene052469:CDS
GTGTAATTGTTACTTCACGA+AGG 0.670168 6.1:+75840713 MS.gene052469:CDS
AAGGCAAGCAAGATTCTAGG+AGG 0.670870 6.1:-75842785 None:intergenic
TTCAAGAGTGAAGATGGTGG+TGG 0.671436 6.1:+75839205 MS.gene052469:CDS
GCTTTCAAGAGTGAAGATGG+TGG 0.735744 6.1:+75839202 MS.gene052469:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTAAATAATATTTCTTA+AGG + chr6.1:75841171-75841190 MS.gene052469:intron 10.0%
!! TATTCGTTATAAGATTAAAA+AGG - chr6.1:75842552-75842571 None:intergenic 15.0%
!!! AATTTTAGAAATGTTTTGTT+GGG + chr6.1:75839304-75839323 MS.gene052469:CDS 15.0%
!!! GTAATTTTTAAAAATAGAAG+TGG + chr6.1:75843337-75843356 MS.gene052469:intron 15.0%
!!! TAATTTTAGAAATGTTTTGT+TGG + chr6.1:75839303-75839322 MS.gene052469:CDS 15.0%
!!! TTTATTTTGTTGAAACATAA+AGG + chr6.1:75841528-75841547 MS.gene052469:intron 15.0%
!!! TTTTAACATATAAGTTCTTA+TGG + chr6.1:75839572-75839591 MS.gene052469:intron 15.0%
!! AATAAACATAAGCTTAGAAA+TGG + chr6.1:75839100-75839119 MS.gene052469:CDS 20.0%
!! AATAATATTTCTTAAGGTGT+TGG + chr6.1:75841177-75841196 MS.gene052469:intron 20.0%
!! CAAAAACAAGGAAAAAAATT+TGG - chr6.1:75842026-75842045 None:intergenic 20.0%
!! CAATAAACATGATTGATTAT+TGG + chr6.1:75841925-75841944 MS.gene052469:intron 20.0%
!! CATCTTTGAATATAGTAATT+AGG + chr6.1:75842924-75842943 MS.gene052469:intron 20.0%
!! GAAACTTAAAAATAACTGAA+GGG + chr6.1:75843230-75843249 MS.gene052469:intron 20.0%
!! TAGATGTAATCAACTTTAAT+CGG - chr6.1:75840590-75840609 None:intergenic 20.0%
!! TCATATACACATTCTAAATT+AGG - chr6.1:75840123-75840142 None:intergenic 20.0%
!! TGAAACTTAAAAATAACTGA+AGG + chr6.1:75843229-75843248 MS.gene052469:intron 20.0%
!! TGAAAGAAAACTTAACTTAA+CGG - chr6.1:75841554-75841573 None:intergenic 20.0%
!! TTGAAAAAAAGAAAGAAACA+AGG - chr6.1:75839943-75839962 None:intergenic 20.0%
!! TTTAATAATTCTTAGAAGTG+TGG + chr6.1:75842621-75842640 MS.gene052469:intron 20.0%
!!! AAAAACAACTTTTCAAGTTA+AGG - chr6.1:75841640-75841659 None:intergenic 20.0%
!!! AGAATTCATTTTCAAAAACA+AGG - chr6.1:75842038-75842057 None:intergenic 20.0%
!!! ATCGATTTCTAGAATATTAT+CGG - chr6.1:75840421-75840440 None:intergenic 20.0%
!!! ATTTTAGAAATGTTTTGTTG+GGG + chr6.1:75839305-75839324 MS.gene052469:CDS 20.0%
!!! ATTTTTTGGAAATTTTGTGA+AGG + chr6.1:75840247-75840266 MS.gene052469:intron 20.0%
!!! GTTATTTTTAAGTTTCACTT+TGG - chr6.1:75843226-75843245 None:intergenic 20.0%
!!! GTTCAATGAAAGTTTTATAT+TGG + chr6.1:75841326-75841345 MS.gene052469:intron 20.0%
!!! TATGTATTAGTTCTTTGTTA+GGG + chr6.1:75839494-75839513 MS.gene052469:intron 20.0%
!!! TTATCATTTTTTAGTCTGTT+TGG + chr6.1:75839425-75839444 MS.gene052469:intron 20.0%
!!! TTATGTATTAGTTCTTTGTT+AGG + chr6.1:75839493-75839512 MS.gene052469:intron 20.0%
!!! TTTGGTTTTGAACAAAATTT+TGG + chr6.1:75839154-75839173 MS.gene052469:CDS 20.0%
! AAAATGAAGTGAAAGTTCAA+AGG + chr6.1:75839263-75839282 MS.gene052469:CDS 25.0%
! AAATGAAGTGAAAGTTCAAA+GGG + chr6.1:75839264-75839283 MS.gene052469:CDS 25.0%
! AACTTGGTTATATTGACATT+TGG + chr6.1:75841009-75841028 MS.gene052469:CDS 25.0%
! ACAACACGAAAAATTAGATT+AGG - chr6.1:75841392-75841411 None:intergenic 25.0%
! ACTTGGTTATATTGACATTT+GGG + chr6.1:75841010-75841029 MS.gene052469:CDS 25.0%
! CCTTAAAGTTAAATAAAGCT+CGG - chr6.1:75841874-75841893 None:intergenic 25.0%
! CTATTATTCTTGATTCTGTT+TGG + chr6.1:75839528-75839547 MS.gene052469:intron 25.0%
! GTCTGATATTTGTAACTTAA+GGG - chr6.1:75843056-75843075 None:intergenic 25.0%
! TGTCTGATATTTGTAACTTA+AGG - chr6.1:75843057-75843076 None:intergenic 25.0%
! TGTTTATTCAAATTACACTC+TGG - chr6.1:75839088-75839107 None:intergenic 25.0%
!! AAACTTGTTTACACTATTGT+CGG - chr6.1:75840172-75840191 None:intergenic 25.0%
!! ATTAGGCTAAATTACACTTT+TGG + chr6.1:75842941-75842960 MS.gene052469:intron 25.0%
!! ATTCCTACACAAGAAAATTT+TGG - chr6.1:75842487-75842506 None:intergenic 25.0%
!! CGATAACAAAATTGATAGTA+GGG - chr6.1:75841306-75841325 None:intergenic 25.0%
!! CGTCAAAAAGCAAAAAATTT+TGG - chr6.1:75840446-75840465 None:intergenic 25.0%
!! TATTGAACATTTGCTTGTTT+TGG - chr6.1:75842673-75842692 None:intergenic 25.0%
!! TTTCCAAAATTTTCTTGTGT+AGG + chr6.1:75842481-75842500 MS.gene052469:intron 25.0%
!!! CCTACTATCAATTTTGTTAT+CGG + chr6.1:75841304-75841323 MS.gene052469:intron 25.0%
!!! CTTGTTTTCATATGTTATCT+TGG + chr6.1:75839642-75839661 MS.gene052469:intron 25.0%
!!! CTTGTTTTCTTAAGTTATCT+CGG + chr6.1:75839730-75839749 MS.gene052469:intron 25.0%
!!! GTTTTGAACAAAATTTTGGT+CGG + chr6.1:75839158-75839177 MS.gene052469:CDS 25.0%
!!! TTCTTTTTTTCAATCTTGTG+TGG + chr6.1:75839950-75839969 MS.gene052469:intron 25.0%
!!! TTTTTTGCACATTAGCATAA+AGG + chr6.1:75841261-75841280 MS.gene052469:intron 25.0%
AACAAGATTGCTGTACAAAT+TGG + chr6.1:75840015-75840034 MS.gene052469:intron 30.0%
AACAAGGAAATAACACAACA+AGG - chr6.1:75839927-75839946 None:intergenic 30.0%
AACAATGCTGGAACAAATAA+AGG + chr6.1:75841439-75841458 MS.gene052469:CDS 30.0%
AACAGTAGTTTCTTATCGAA+TGG + chr6.1:75841829-75841848 MS.gene052469:intron 30.0%
AAGAGTTATATGCATGTTTC+AGG + chr6.1:75843375-75843394 MS.gene052469:intron 30.0%
AATATAGACAAGCTGTTGTT+AGG + chr6.1:75839359-75839378 MS.gene052469:CDS 30.0%
ACAAGGAAATAACACAACAA+GGG - chr6.1:75839926-75839945 None:intergenic 30.0%
ACACAAAAGGACTAAAATGA+AGG - chr6.1:75842982-75843001 None:intergenic 30.0%
ACAGTAGTTTCTTATCGAAT+GGG + chr6.1:75841830-75841849 MS.gene052469:intron 30.0%
ACCAAGTAATTAAAGTGTAC+TGG - chr6.1:75842885-75842904 None:intergenic 30.0%
ACCAGTACACTTTAATTACT+TGG + chr6.1:75842881-75842900 MS.gene052469:intron 30.0%
ACTGTAAACAACATGATAGA+AGG - chr6.1:75842111-75842130 None:intergenic 30.0%
AGAGTTATATGCATGTTTCA+GGG + chr6.1:75843376-75843395 MS.gene052469:intron 30.0%
ATATAGACAAGCTGTTGTTA+GGG + chr6.1:75839360-75839379 MS.gene052469:CDS 30.0%
ATATGTGATAGAGAGAAGAT+AGG - chr6.1:75842074-75842093 None:intergenic 30.0%
ATATGTTATCTTGGAGAGTT+TGG + chr6.1:75839651-75839670 MS.gene052469:intron 30.0%
ATTTCATGGATCACTATTGA+CGG + chr6.1:75842341-75842360 MS.gene052469:CDS 30.0%
TAAAGTTAAATAAAGCTCGG+TGG - chr6.1:75841871-75841890 None:intergenic 30.0%
TACAACATCTCATTCTTAGA+CGG - chr6.1:75841579-75841598 None:intergenic 30.0%
TACTACATAGAAGAATGCAT+AGG - chr6.1:75840471-75840490 None:intergenic 30.0%
TAGCTACACAACAAATGAAA+AGG - chr6.1:75842294-75842313 None:intergenic 30.0%
TGAAAGTTCAAAGGGAAAAT+AGG + chr6.1:75839272-75839291 MS.gene052469:CDS 30.0%
! AAATTTTGTGTGCAGTACAA+GGG + chr6.1:75840645-75840664 MS.gene052469:intron 30.0%
! AGTAGCCTAAATTTCACTTT+TGG - chr6.1:75843257-75843276 None:intergenic 30.0%
! ATGTAATGGCGATAATTTTG+AGG + chr6.1:75842853-75842872 MS.gene052469:intron 30.0%
! CATAAGCTTAGAAATGGATT+TGG + chr6.1:75839106-75839125 MS.gene052469:CDS 30.0%
! CCGATAACAAAATTGATAGT+AGG - chr6.1:75841307-75841326 None:intergenic 30.0%
! GTTGTGTTTGAAAAAGTGTA+GGG + chr6.1:75839180-75839199 MS.gene052469:CDS 30.0%
! TAAATTTTGTGTGCAGTACA+AGG + chr6.1:75840644-75840663 MS.gene052469:intron 30.0%
! TTCAAAGGGAAAATAGGTTT+TGG + chr6.1:75839278-75839297 MS.gene052469:CDS 30.0%
! TTCTCACAGAACTTCTTTTA+AGG + chr6.1:75842412-75842431 MS.gene052469:CDS 30.0%
! TTGTTGGGGAATTTTATGAT+GGG + chr6.1:75839319-75839338 MS.gene052469:CDS 30.0%
! TTTGTTGGGGAATTTTATGA+TGG + chr6.1:75839318-75839337 MS.gene052469:CDS 30.0%
!! CACAAGAAAATTTTGGAAAG+CGG - chr6.1:75842480-75842499 None:intergenic 30.0%
!! CCGAGCTTTATTTAACTTTA+AGG + chr6.1:75841871-75841890 MS.gene052469:intron 30.0%
!! TTTCATTTGTTGTGTAGCTA+TGG + chr6.1:75842294-75842313 MS.gene052469:intron 30.0%
!! TTTGATGATGAGGTATGTAA+TGG + chr6.1:75842839-75842858 MS.gene052469:intron 30.0%
!! TTTTGGAAATTTTGTGAAGG+TGG + chr6.1:75840250-75840269 MS.gene052469:intron 30.0%
!!! ACGTTTATTGTTTTTTCGTG+TGG + chr6.1:75842453-75842472 MS.gene052469:intron 30.0%
!!! CATATGTGACGTTGATTTTT+TGG + chr6.1:75840233-75840252 MS.gene052469:intron 30.0%
!!! TTCTGTCTTCTTTTTGAGTT+AGG - chr6.1:75843165-75843184 None:intergenic 30.0%
!!! TTTTATGATGGGTTCTAAGT+TGG + chr6.1:75839330-75839349 MS.gene052469:CDS 30.0%
AAAAGGAAGTAAGCATCATC+AGG - chr6.1:75842277-75842296 None:intergenic 35.0%
AAAGGAAATTGTTGTGCCAA+TGG + chr6.1:75841279-75841298 MS.gene052469:intron 35.0%
AAATGTACACAGAGAACACA+TGG + chr6.1:75843482-75843501 MS.gene052469:CDS 35.0%
AATGTTCTAGCAACAGTTTC+AGG - chr6.1:75842710-75842729 None:intergenic 35.0%
ACCAACGTTTGTAACACAAA+AGG - chr6.1:75842995-75843014 None:intergenic 35.0%
ACTCAACAGATAAACAATGC+TGG + chr6.1:75841427-75841446 MS.gene052469:intron 35.0%
AGAAGATAGGAGGATAGTTA+GGG - chr6.1:75842061-75842080 None:intergenic 35.0%
AGAGCTTGAGGAAAATCTAA+AGG + chr6.1:75840863-75840882 MS.gene052469:CDS 35.0%
AGGGACCAAAAGTGAAATTT+AGG + chr6.1:75843249-75843268 MS.gene052469:intron 35.0%
ATAACACAACAAGGGCTATT+TGG - chr6.1:75839918-75839937 None:intergenic 35.0%
ATATTTAATATGGACGGTGC+AGG + chr6.1:75841756-75841775 MS.gene052469:CDS 35.0%
ATGAAACCGACAAATGTCAA+TGG - chr6.1:75843027-75843046 None:intergenic 35.0%
ATTGTCTCGACAAATTTGGT+CGG + chr6.1:75841672-75841691 MS.gene052469:CDS 35.0%
CAAAAAGATACTGACACATG+TGG + chr6.1:75841127-75841146 MS.gene052469:intron 35.0%
CACCGTCCATATTAAATATG+TGG - chr6.1:75841755-75841774 None:intergenic 35.0%
CTTGAGGAAAATCTAAAGGA+AGG + chr6.1:75840867-75840886 MS.gene052469:CDS 35.0%
CTTTCTCAAGCAAAAGTTGT+AGG + chr6.1:75840924-75840943 MS.gene052469:CDS 35.0%
GGCCACATATTTAATATGGA+CGG + chr6.1:75841750-75841769 MS.gene052469:CDS 35.0%
GTAATGTTGTCATAACTGGA+AGG + chr6.1:75840383-75840402 MS.gene052469:CDS 35.0%
GTAGATTGTCTCGACAAATT+TGG + chr6.1:75841668-75841687 MS.gene052469:intron 35.0%
GTAGCTCAAATTCTTCATCT+GGG + chr6.1:75839128-75839147 MS.gene052469:CDS 35.0%
GTGATCCATGAAATTGTCTA+AGG - chr6.1:75842335-75842354 None:intergenic 35.0%
GTTATCATTGGGACAATGAT+AGG + chr6.1:75840319-75840338 MS.gene052469:CDS 35.0%
TAAGTACTTGTGAGACTGTT+TGG - chr6.1:75839820-75839839 None:intergenic 35.0%
TAGCTCAAATTCTTCATCTG+GGG + chr6.1:75839129-75839148 MS.gene052469:CDS 35.0%
TATCTACACGATTATCTACG+TGG + chr6.1:75840513-75840532 MS.gene052469:intron 35.0%
TATTGACATTTGGGTAAGTG+TGG + chr6.1:75841019-75841038 MS.gene052469:intron 35.0%
TCCATATTAAATATGTGGCC+TGG - chr6.1:75841750-75841769 None:intergenic 35.0%
TGAAACCGACAAATGTCAAT+GGG - chr6.1:75843026-75843045 None:intergenic 35.0%
TGAGTGTTCTTCAAAAGTCA+TGG + chr6.1:75842239-75842258 MS.gene052469:intron 35.0%
TGTGTACATTTCCATTGCAT+CGG - chr6.1:75843473-75843492 None:intergenic 35.0%
TTGACGACAGAAAAAGAAGT+TGG - chr6.1:75842512-75842531 None:intergenic 35.0%
TTGCTAGAACATTAGTTCCA+CGG + chr6.1:75842717-75842736 MS.gene052469:CDS 35.0%
TTGGTTTCTCATAATACGCA+TGG - chr6.1:75841721-75841740 None:intergenic 35.0%
TTGTCAAGAGAATACTCACA+CGG - chr6.1:75841811-75841830 None:intergenic 35.0%
! AAATTGATAGTAGGGTCCAT+TGG - chr6.1:75841298-75841317 None:intergenic 35.0%
! AATTTTGTGTGCAGTACAAG+GGG + chr6.1:75840646-75840665 MS.gene052469:intron 35.0%
! ACATCTGAAATCCAATTGCA+AGG - chr6.1:75840077-75840096 None:intergenic 35.0%
! AGCTATGGTTCTACAAAATG+CGG + chr6.1:75842309-75842328 MS.gene052469:intron 35.0%
! ATGCACTGATATGGTATAGT+TGG + chr6.1:75840287-75840306 MS.gene052469:CDS 35.0%
! CACATGTGTCAGTATCTTTT+TGG - chr6.1:75841129-75841148 None:intergenic 35.0%
! GGTTGTGTTTGAAAAAGTGT+AGG + chr6.1:75839179-75839198 MS.gene052469:CDS 35.0%
! GTGTAATTGTTACTTCACGA+AGG + chr6.1:75840713-75840732 MS.gene052469:CDS 35.0%
! TAATTGTTACTTCACGAAGG+TGG + chr6.1:75840716-75840735 MS.gene052469:intron 35.0%
! TCCTTTTGTGTTACAAACGT+TGG + chr6.1:75842991-75843010 MS.gene052469:intron 35.0%
!! GGTTGATGAAGTTCTATCTA+AGG + chr6.1:75839381-75839400 MS.gene052469:CDS 35.0%
!!! GTTGGTTTTAGTATCTTGCT+CGG + chr6.1:75841195-75841214 MS.gene052469:intron 35.0%
AACATGATAGAAGGCTCATG+TGG - chr6.1:75842102-75842121 None:intergenic 40.0%
ACCACACTCAGCAAGAAATA+AGG - chr6.1:75841355-75841374 None:intergenic 40.0%
AGGAGGAGTCAAGTAATTGA+TGG - chr6.1:75842771-75842790 None:intergenic 40.0%
ATTAAATATGTGGCCTGGCT+TGG - chr6.1:75841745-75841764 None:intergenic 40.0%
CAAAGATGAACCAACTGCAT+TGG - chr6.1:75840898-75840917 None:intergenic 40.0%
CAGTGACGAAGATATCAAAC+AGG + chr6.1:75841483-75841502 MS.gene052469:CDS 40.0%
CATTGCTTGTGATGTTTGTG+AGG + chr6.1:75840947-75840966 MS.gene052469:CDS 40.0%
CCAGTTATGACAACATTACG+CGG - chr6.1:75840382-75840401 None:intergenic 40.0%
CTGATATGGTATAGTTGGCT+TGG + chr6.1:75840292-75840311 MS.gene052469:CDS 40.0%
GACAATGATAGGTGCTAACT+GGG + chr6.1:75840330-75840349 MS.gene052469:CDS 40.0%
GAGAAGATAGGAGGATAGTT+AGG - chr6.1:75842062-75842081 None:intergenic 40.0%
GCAATTGGATTTCAGATGTC+AGG + chr6.1:75840078-75840097 MS.gene052469:CDS 40.0%
GCCAGGCCACATATTTAATA+TGG + chr6.1:75841746-75841765 MS.gene052469:CDS 40.0%
GGCTAATGATGTTCAGAGAT+TGG + chr6.1:75840968-75840987 MS.gene052469:CDS 40.0%
GGTAGCTCAAATTCTTCATC+TGG + chr6.1:75839127-75839146 MS.gene052469:CDS 40.0%
GTAGTTTCTTATCGAATGGG+AGG + chr6.1:75841833-75841852 MS.gene052469:intron 40.0%
GTGTTCTTCAAAAGTCATGG+TGG + chr6.1:75842242-75842261 MS.gene052469:intron 40.0%
GTTACAAACGTTGGTCACTT+TGG + chr6.1:75843000-75843019 MS.gene052469:intron 40.0%
TACTTGTGAGACTGTTTGGT+TGG - chr6.1:75839816-75839835 None:intergenic 40.0%
TCAACGTCACATATGATACG+AGG - chr6.1:75840228-75840247 None:intergenic 40.0%
TCAGAGATTGGCAAACTTTG+CGG + chr6.1:75840980-75840999 MS.gene052469:CDS 40.0%
TCATAATACGCATGGCTTCT+CGG - chr6.1:75841713-75841732 None:intergenic 40.0%
TCCGTCAAATGTTTCATACG+CGG + chr6.1:75843109-75843128 MS.gene052469:intron 40.0%
TCGTCACTGAATTGAAGCAA+TGG - chr6.1:75841472-75841491 None:intergenic 40.0%
TGTGATAGAGAGAAGATAGG+AGG - chr6.1:75842071-75842090 None:intergenic 40.0%
TTACCTACGAATCACTGACA+CGG + chr6.1:75843279-75843298 MS.gene052469:intron 40.0%
TTGGATTTCAGATGTCAGGT+TGG + chr6.1:75840082-75840101 MS.gene052469:intron 40.0%
TTTGGCCCATTGACATTTGT+CGG + chr6.1:75843018-75843037 MS.gene052469:intron 40.0%
! AATTCTTCATCTGGGGTGTT+TGG + chr6.1:75839136-75839155 MS.gene052469:CDS 40.0%
! ACATATGATACGAGGCATCT+TGG - chr6.1:75840220-75840239 None:intergenic 40.0%
! TCATACGCGGCATTATGTTT+TGG + chr6.1:75843122-75843141 MS.gene052469:intron 40.0%
! TCCTTATTTCTTGCTGAGTG+TGG + chr6.1:75841351-75841370 MS.gene052469:intron 40.0%
!! ATATGGTATAGTTGGCTTGG+AGG + chr6.1:75840295-75840314 MS.gene052469:CDS 40.0%
!! GTTCTTTGTTAGGGTTGATG+AGG + chr6.1:75839503-75839522 MS.gene052469:intron 40.0%
!! TGAGTGTGGTTTCTGCTTTT+TGG + chr6.1:75841365-75841384 MS.gene052469:intron 40.0%
!! TGTTTTGGACCTTGCTGATT+AGG + chr6.1:75843137-75843156 MS.gene052469:intron 40.0%
!!! GTGTGGCTTTTTTTTTGCAG+TGG + chr6.1:75842638-75842657 MS.gene052469:intron 40.0%
AAGGCAAGCAAGATTCTAGG+AGG - chr6.1:75842788-75842807 None:intergenic 45.0%
ACCAAGGCAAGCAAGATTCT+AGG - chr6.1:75842791-75842810 None:intergenic 45.0%
AGGGCTTTCAAGAGTGAAGA+TGG + chr6.1:75839199-75839218 MS.gene052469:CDS 45.0%
ATGAGAAACCAAACCAAGCC+AGG + chr6.1:75841729-75841748 MS.gene052469:CDS 45.0%
ATGCGAGTCGTTAAAGGAAC+TGG + chr6.1:75842740-75842759 MS.gene052469:CDS 45.0%
ATTGTGACCATGATGAGCAC+TGG + chr6.1:75840045-75840064 MS.gene052469:CDS 45.0%
CATAATACGCATGGCTTCTC+GGG - chr6.1:75841712-75841731 None:intergenic 45.0%
CCGCGTAATGTTGTCATAAC+TGG + chr6.1:75840379-75840398 MS.gene052469:CDS 45.0%
CTTTGACACTTGACACGTGT+CGG + chr6.1:75841094-75841113 MS.gene052469:intron 45.0%
GCCGCGTATGAAACATTTGA+CGG - chr6.1:75843113-75843132 None:intergenic 45.0%
GCTTTCAAGAGTGAAGATGG+TGG + chr6.1:75839202-75839221 MS.gene052469:CDS 45.0%
GGACAATGATAGGTGCTAAC+TGG + chr6.1:75840329-75840348 MS.gene052469:CDS 45.0%
GGCTTGGAGGAGTTATCATT+GGG + chr6.1:75840308-75840327 MS.gene052469:CDS 45.0%
GTTTCTAAGTCGGTCTGCTT+CGG - chr6.1:75843419-75843438 None:intergenic 45.0%
TCCTAGAATCTTGCTTGCCT+TGG + chr6.1:75842787-75842806 MS.gene052469:CDS 45.0%
TGAAGGTGGAGATAGTCAGA+TGG + chr6.1:75840264-75840283 MS.gene052469:intron 45.0%
TGCGGCCTTAGACAATTTCA+TGG + chr6.1:75842327-75842346 MS.gene052469:CDS 45.0%
TTGGAGGATTATTGTCGCGA+AGG + chr6.1:75840355-75840374 MS.gene052469:CDS 45.0%
TTTCGGCCCAGTTTCTAAGT+CGG - chr6.1:75843429-75843448 None:intergenic 45.0%
! AAGCAGACCGACTTAGAAAC+TGG + chr6.1:75843419-75843438 MS.gene052469:CDS 45.0%
! AGCAGACCGACTTAGAAACT+GGG + chr6.1:75843420-75843439 MS.gene052469:CDS 45.0%
! CATTTCCATTGCATCGGTGA+AGG - chr6.1:75843467-75843486 None:intergenic 45.0%
! GTCAGATGGATGCACTGATA+TGG + chr6.1:75840278-75840297 MS.gene052469:CDS 45.0%
! GTTTTCCTTCACCGATGCAA+TGG + chr6.1:75843459-75843478 MS.gene052469:CDS 45.0%
! TGGCTTGGAGGAGTTATCAT+TGG + chr6.1:75840307-75840326 MS.gene052469:CDS 45.0%
! TTCAAGAGTGAAGATGGTGG+TGG + chr6.1:75839205-75839224 MS.gene052469:CDS 45.0%
!! ACTGGTGTCATCCTTGCAAT+TGG + chr6.1:75840063-75840082 MS.gene052469:CDS 45.0%
!! AGATGGTGGTGGTGATTTGA+AGG + chr6.1:75839216-75839235 MS.gene052469:CDS 45.0%
AACTTTGCGGTCAGCGAACT+TGG + chr6.1:75840993-75841012 MS.gene052469:CDS 50.0%
AAGGGGATTGGGCAAAGCTT+TGG + chr6.1:75840663-75840682 MS.gene052469:CDS 50.0%
AATACTCACACGGCTGTCAG+AGG - chr6.1:75841801-75841820 None:intergenic 50.0%
AATATGGACGGTGCAGGTTC+CGG + chr6.1:75841762-75841781 MS.gene052469:CDS 50.0%
AGCACTAGCAGCAATTTGCC+TGG + chr6.1:75843553-75843572 MS.gene052469:CDS 50.0%
AGCGACTGTGAAAGAGCTTG+AGG + chr6.1:75840851-75840870 MS.gene052469:CDS 50.0%
AGTTAGGCGCCTAATCAGCA+AGG - chr6.1:75843149-75843168 None:intergenic 50.0%
AGTTCTGTGAGAACCATGCC+TGG - chr6.1:75842405-75842424 None:intergenic 50.0%
CCTTCACAGAATTCGAGAGC+GGG - chr6.1:75840813-75840832 None:intergenic 50.0%
CCTTGGTCACTGCTTGGTTA+CGG + chr6.1:75842804-75842823 MS.gene052469:CDS 50.0%
GAGTGCAAGCGATCGAAAGT+AGG + chr6.1:75842363-75842382 MS.gene052469:CDS 50.0%
GATAGGTGCTAACTGGGTGT+TGG + chr6.1:75840336-75840355 MS.gene052469:CDS 50.0%
GATGACACCAGTGCTCATCA+TGG - chr6.1:75840055-75840074 None:intergenic 50.0%
GCCTTCACAGAATTCGAGAG+CGG - chr6.1:75840814-75840833 None:intergenic 50.0%
GTGTGCAGTACAAGGGGATT+GGG + chr6.1:75840652-75840671 MS.gene052469:intron 50.0%
TCTACGTGGTGCGCTGTATT+TGG + chr6.1:75840527-75840546 MS.gene052469:intron 50.0%
TGTCCGTGTCAGTGATTCGT+AGG - chr6.1:75843285-75843304 None:intergenic 50.0%
TGTGTGCAGTACAAGGGGAT+TGG + chr6.1:75840651-75840670 MS.gene052469:intron 50.0%
! GGAAAACCGTGCACGGTTTT+CGG - chr6.1:75843446-75843465 None:intergenic 50.0%
!! AGGTCGCTGGTTTGATGATG+AGG + chr6.1:75842829-75842848 MS.gene052469:CDS 50.0%
!! ATATGTGGCCTGGCTTGGTT+TGG - chr6.1:75841740-75841759 None:intergenic 50.0%
!! GAAGGCATTGCCAATGCAGT+TGG + chr6.1:75840885-75840904 MS.gene052469:CDS 50.0%
ACAGTCGCTTGCACAGACTC+GGG - chr6.1:75840840-75840859 None:intergenic 55.0%
CACAGTCGCTTGCACAGACT+CGG - chr6.1:75840841-75840860 None:intergenic 55.0%
CCACGGATGCGAGTCGTTAA+AGG + chr6.1:75842734-75842753 MS.gene052469:CDS 55.0%
CCATACAGCATCTCCAGGCA+TGG + chr6.1:75842389-75842408 MS.gene052469:CDS 55.0%
CCATGCCTGGAGATGCTGTA+TGG - chr6.1:75842392-75842411 None:intergenic 55.0%
CCCGCTCTCGAATTCTGTGA+AGG + chr6.1:75840810-75840829 MS.gene052469:intron 55.0%
CCGTAACCAAGCAGTGACCA+AGG - chr6.1:75842807-75842826 None:intergenic 55.0%
CCTTTAACGACTCGCATCCG+TGG - chr6.1:75842737-75842756 None:intergenic 55.0%
CGAATCACTGACACGGACAC+AGG + chr6.1:75843286-75843305 MS.gene052469:intron 55.0%
CGGTGAAGGAAAACCGTGCA+CGG - chr6.1:75843453-75843472 None:intergenic 55.0%
GCATGGCTTCTCGGGTACAA+AGG - chr6.1:75841704-75841723 None:intergenic 55.0%
GCGCGGGAGTTTCTTCTTTC+GGG + chr6.1:75840685-75840704 MS.gene052469:CDS 55.0%
GGCGCGGGAGTTTCTTCTTT+CGG + chr6.1:75840684-75840703 MS.gene052469:CDS 55.0%
GGTGTCCATACAGCATCTCC+AGG + chr6.1:75842384-75842403 MS.gene052469:CDS 55.0%
TGCTTGCCTTGGTCACTGCT+TGG + chr6.1:75842798-75842817 MS.gene052469:CDS 55.0%
! ATTGGGCAAAGCTTTGGCGC+GGG + chr6.1:75840669-75840688 MS.gene052469:CDS 55.0%
! GATTGGGCAAAGCTTTGGCG+CGG + chr6.1:75840668-75840687 MS.gene052469:CDS 55.0%
!! AGGTGCTAACTGGGTGTTGG+AGG + chr6.1:75840339-75840358 MS.gene052469:CDS 55.0%
ACTGGGCCGAAAACCGTGCA+CGG + chr6.1:75843437-75843456 MS.gene052469:CDS 60.0%
CAGTCGCTTGCACAGACTCG+GGG - chr6.1:75840839-75840858 None:intergenic 60.0%
GTCACTGCTTGGTTACGGCG+AGG + chr6.1:75842809-75842828 MS.gene052469:CDS 60.0%
! CAGAGGTGTGCTAGACCCTC+CGG - chr6.1:75841784-75841803 None:intergenic 60.0%
ATGGACGGTGCAGGTTCCGG+AGG + chr6.1:75841765-75841784 MS.gene052469:CDS 65.0%
CTTGGTTACGGCGAGGTCGC+TGG + chr6.1:75842816-75842835 MS.gene052469:CDS 65.0%
TGGACGGTGCAGGTTCCGGA+GGG + chr6.1:75841766-75841785 MS.gene052469:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 75839052 75843582 75839052 ID=MS.gene052469
chr6.1 mRNA 75839052 75843582 75839052 ID=MS.gene052469.t1;Parent=MS.gene052469
chr6.1 exon 75839052 75839402 75839052 ID=MS.gene052469.t1.exon1;Parent=MS.gene052469.t1
chr6.1 CDS 75839052 75839402 75839052 ID=cds.MS.gene052469.t1;Parent=MS.gene052469.t1
chr6.1 exon 75840021 75840099 75840021 ID=MS.gene052469.t1.exon2;Parent=MS.gene052469.t1
chr6.1 CDS 75840021 75840099 75840021 ID=cds.MS.gene052469.t1;Parent=MS.gene052469.t1
chr6.1 exon 75840269 75840404 75840269 ID=MS.gene052469.t1.exon3;Parent=MS.gene052469.t1
chr6.1 CDS 75840269 75840404 75840269 ID=cds.MS.gene052469.t1;Parent=MS.gene052469.t1
chr6.1 exon 75840660 75840734 75840660 ID=MS.gene052469.t1.exon4;Parent=MS.gene052469.t1
chr6.1 CDS 75840660 75840734 75840660 ID=cds.MS.gene052469.t1;Parent=MS.gene052469.t1
chr6.1 exon 75840836 75841031 75840836 ID=MS.gene052469.t1.exon5;Parent=MS.gene052469.t1
chr6.1 CDS 75840836 75841031 75840836 ID=cds.MS.gene052469.t1;Parent=MS.gene052469.t1
chr6.1 exon 75841436 75841504 75841436 ID=MS.gene052469.t1.exon6;Parent=MS.gene052469.t1
chr6.1 CDS 75841436 75841504 75841436 ID=cds.MS.gene052469.t1;Parent=MS.gene052469.t1
chr6.1 exon 75841672 75841811 75841672 ID=MS.gene052469.t1.exon7;Parent=MS.gene052469.t1
chr6.1 CDS 75841672 75841811 75841672 ID=cds.MS.gene052469.t1;Parent=MS.gene052469.t1
chr6.1 exon 75842311 75842433 75842311 ID=MS.gene052469.t1.exon8;Parent=MS.gene052469.t1
chr6.1 CDS 75842311 75842433 75842311 ID=cds.MS.gene052469.t1;Parent=MS.gene052469.t1
chr6.1 exon 75842658 75842850 75842658 ID=MS.gene052469.t1.exon9;Parent=MS.gene052469.t1
chr6.1 CDS 75842658 75842850 75842658 ID=cds.MS.gene052469.t1;Parent=MS.gene052469.t1
chr6.1 exon 75843397 75843582 75843397 ID=MS.gene052469.t1.exon10;Parent=MS.gene052469.t1
chr6.1 CDS 75843397 75843582 75843397 ID=cds.MS.gene052469.t1;Parent=MS.gene052469.t1
Gene Sequence

>MS.gene052469

ATGGCTACTACAATTGTTAAGCTTCAAGTTTTTCCAGAGTGTAATTTGAATAAACATAAGCTTAGAAATGGATTTGGTAGCTCAAATTCTTCATCTGGGGTGTTTGGTTTTGAACAAAATTTTGGTCGGTTGTGTTTGAAAAAGTGTAGGGCTTTCAAGAGTGAAGATGGTGGTGGTGATTTGAAGGAGAAAAAGTTGAGAAGTTTGAAGAAAAATGAAGTGAAAGTTCAAAGGGAAAATAGGTTTTGGAGTAATTTTAGAAATGTTTTGTTGGGGAATTTTATGATGGGTTCTAAGTTGGATGATGAATATAGACAAGCTGTTGTTAGGGTTGATGAAGTTCTATCTAAGGTGAGTTCTTGTTTTTGATTATTTATCATTTTTTAGTCTGTTTGGATAATTAATTGTTTCATATAGCATAAGCACTTATCATATAAGTAGTTATGTATTAGTTCTTTGTTAGGGTTGATGAGGTTCTATTATTCTTGATTCTGTTTGGATTAACAACTTAATTGAGTGATTTTAACATATAAGTTCTTATGGATAAGCTATTTCTTTAACAAAAGATAAAATTAAGTGTTTATCTATAACTTGTTTTCATATGTTATCTTGGAGAGTTTGGAAACTTATGTATAGCTTATTTCTATAACAAAAGATAAAATAAGTGCTTATCTATAACTTGTTTTCTTAAGTTATCTCGGCGAGTTACAGAAAGTAAGTTGAAAATAGCTTACAGAAATAATTTGTTTTCATGAATTGTTCCAACCAAACAGTCTCACAAGTACTTAATTTAGTCTCACATACAAGTACTTAATCTAGTCTCACAAGTGCTTAATCTTGTAGATAAGCTCAAATAAGCAAATCCAAATAGCCCTTGTTGTGTTATTTCCTTGTTTCTTTCTTTTTTTCAATCTTGTGTGGTATTGAATGTTGAATATAACTGTGTGTTTATGTATTTGTGAAAACAAGATTGCTGTACAAATTGGAAGATATATTGTGACCATGATGAGCACTGGTGTCATCCTTGCAATTGGATTTCAGATGTCAGGTTGGTATATATTCTACTTTCCTAATTTAGAATGTGTATATGAAAATGTTTGCACTTATAGTCGAGTTTCCGACAATAGTGTAAACAAGTTTTACACAAACGTTCAATCATATCTCACCAAGATGCCTCGTATCATATGTGACGTTGATTTTTTGGAAATTTTGTGAAGGTGGAGATAGTCAGATGGATGCACTGATATGGTATAGTTGGCTTGGAGGAGTTATCATTGGGACAATGATAGGTGCTAACTGGGTGTTGGAGGATTATTGTCGCGAAGGTCCGCGTAATGTTGTCATAACTGGAAGGTAAATTCACTCACCGATAATATTCTAGAAATCGATTTCCAAAATTTTTTGCTTTTTGACGAGCCTATGCATTCTTCTATGTAGTATCTTTCAGTTTTTTTGCAAAAATATCTACACGATTATCTACGTGGTGCGCTGTATTTGGATGCATGTGTAAAAAAAATTAACACTGATATTGCATACCGATTAAAGTTGATTACATCTAAGTTTTCTTTCATAATATTGACTCTTGCATCTTGTAAATTTTGTGTGCAGTACAAGGGGATTGGGCAAAGCTTTGGCGCGGGAGTTTCTTCTTTCGGGAGATCGTGTAATTGTTACTTCACGAAGGTGGTATCACAAACTATGAGAACATTTTATAAAGATGAAATTAATATATTTTGTTGCTCACAACGTGTTGTTGCTCCCGCTCTCGAATTCTGTGAAGGCAGCCCCGAGTCTGTGCAAGCGACTGTGAAAGAGCTTGAGGAAAATCTAAAGGAAGGCATTGCCAATGCAGTTGGTTCATCTTTGACAAAGCTTTCTCAAGCAAAAGTTGTAGGCATTGCTTGTGATGTTTGTGAGGCTAATGATGTTCAGAGATTGGCAAACTTTGCGGTCAGCGAACTTGGTTATATTGACATTTGGGTAAGTGTGGCTGTTCTTTCTATTGAGCACTATGTAGCACTGACACTTGAGATTGAACGTGTCTTTGACACTTGACACGTGTCGGCATTAGATACCAAAAAGATACTGACACATGTGGTTACATTCAATCACTTTCATTTTCTTAAATAATATTTCTTAAGGTGTTGGTTTTAGTATCTTGCTCGGTGTCTGTGTCAGTGTTACATAGATTGAGCATCACATGAGCTAGTTTTTTGCACATTAGCATAAAGGAAATTGTTGTGCCAATGGACCCTACTATCAATTTTGTTATCGGTTCAATGAAAGTTTTATATTGGATTCCTTATTTCTTGCTGAGTGTGGTTTCTGCTTTTTGGTCCTAATCTAATTTTTCGTGTTGTTTTTTTATTCAAACTACTCAACAGATAAACAATGCTGGAACAAATAAAGGTTTTAGACCATTGCTTCAATTCAGTGACGAAGATATCAAACAGGTATGTAACTGCATAATTTCTTTTTTATTTTGTTGAAACATAAAGGCCGTTAAGTTAAGTTTTCTTTCATTCCGTCTAAGAATGAGATGTTGTAAAATTTCTTCTCATGAATGATCGTTTTTTCAACTTCATCCTTAACTTGAAAAGTTGTTTTTTTTCTTCTGTAGATTGTCTCGACAAATTTGGTCGGTTCTATCCTTTGTACCCGAGAAGCCATGCGTATTATGAGAAACCAAACCAAGCCAGGCCACATATTTAATATGGACGGTGCAGGTTCCGGAGGGTCTAGCACACCTCTGACAGCCGTGTGAGTATTCTCTTGACAACAGTAGTTTCTTATCGAATGGGAGGATGTTAATCATTCCACCGAGCTTTATTTAACTTTAAGGCTCATGCACTTTTTCATGTTTTCACTTCAATCAATAAACATGATTGATTATTGGTTCTATATTTTTCTCATTATTTTCTGTTACAATTTTCAAAAACAGATTCAACATTTTTAAGAAATTCTGAGAATGCCAAATTTTTTTCCTTGTTTTTGAAAATGAATTCTCCCTAACTATCCTCCTATCTTCTCTCTATCACATATATTCACCACATGAGCCTTCTATCATGTTGTTTACAGTCTAAAATGAACACAAATTTAAGATAGTGAAAATTGAAAATGTTTTCTGAAACTAAATGAGACATTCTATATGTTACTCGAAATATGCGTGATTGTGTGTATCTATGAATGAGTGTTCTTCAAAAGTCATGGTGGATAACGATTCCTGATGATGCTTACTTCCTTTTCATTTGTTGTGTAGCTATGGTTCTACAAAATGCGGCCTTAGACAATTTCATGGATCACTATTGACGGAGTGCAAGCGATCGAAAGTAGGTGTCCATACAGCATCTCCAGGCATGGTTCTCACAGAACTTCTTTTAAGGTAACATCTCTATTTGCAAACGTTTATTGTTTTTTCGTGTGGACCGCTTTCCAAAATTTTCTTGTGTAGGAATTACCAACTTCTTTTTCTGTCGTCAACTATATTTTCAGCTCGTCCTTTTTAATCTTATAACGAATAGCATTCTTGTGTTTCTTTGTGTAACTTTCTCTGATCTAAGTTAATATAGTTTAATAATTCTTAGAAGTGTGGCTTTTTTTTTGCAGTGGTTCAACTATCCAAAACAAGCAAATGTTCAATATCATATGTGAGCTTCCTGAAACTGTTGCTAGAACATTAGTTCCACGGATGCGAGTCGTTAAAGGAACTGGCAAAGCCATCAATTACTTGACTCCTCCTAGAATCTTGCTTGCCTTGGTCACTGCTTGGTTACGGCGAGGTCGCTGGTTTGATGATGAGGTATGTAATGGCGATAATTTTGAGGCTGAAACCAGTACACTTTAATTACTTGGTATTCTATCATATAAATGCTCATCTTTGAATATAGTAATTAGGCTAAATTACACTTTTGGTCACATAAGTATTTTCCTTCATTTTAGTCCTTTTGTGTTACAAACGTTGGTCACTTTGGCCCATTGACATTTGTCGGTTTCATATTAGTCCCTTAAGTTACAAATATCAGACACTTACATCATTTCTCTCAGTTTTCTGTTTGAGTCCGTCAAATGTTTCATACGCGGCATTATGTTTTGGACCTTGCTGATTAGGCGCCTAACTCAAAAAGAAGACAGAAACATTTTACGAACTAAAACAGAAAACTGATAGAAAAGACCAAAGTGAAACTTAAAAATAACTGAAGGGACCAAAAGTGAAATTTAGGCTACTAATTACCTACGAATCACTGACACGGACACAGGACACGACACAGACACATAGTGTTTGATAGTAATTTTTAAAAATAGAAGTGGTTCAATGTAATTCTTAAGAGTTATATGCATGTTTCAGGGAAGAGCATTATACTCAGCCGAAGCAGACCGACTTAGAAACTGGGCCGAAAACCGTGCACGGTTTTCCTTCACCGATGCAATGGAAATGTACACAGAGAACACATGGTTATCAGTCTTCTCACTTTCAGTTGTTTGTGCATTCATAATTCTTTCTAGCACTAGCAGCAATTTGCCTGGAACATAA

Protein sequence

>MS.gene052469.t1

MATTIVKLQVFPECNLNKHKLRNGFGSSNSSSGVFGFEQNFGRLCLKKCRAFKSEDGGGDLKEKKLRSLKKNEVKVQRENRFWSNFRNVLLGNFMMGSKLDDEYRQAVVRVDEVLSKIAVQIGRYIVTMMSTGVILAIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANWVLEDYCREGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQATVKELEENLKEGIANAVGSSLTKLSQAKVVGIACDVCEANDVQRLANFAVSELGYIDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRIMRNQTKPGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSLLTECKRSKVGVHTASPGMVLTELLLSGSTIQNKQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYSAEADRLRNWAENRARFSFTDAMEMYTENTWLSVFSLSVVCAFIILSSTSSNLPGT