Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071130.t1 | NP_001363155.1 | 92.4 | 485 | 37 | 0 | 2 | 486 | 68 | 552 | 1.00E-264 | 922.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071130.t1 | Q5UB07 | 92.2 | 485 | 38 | 0 | 2 | 486 | 68 | 552 | 1.2e-266 | 919.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071130.t1 | A0A072UIS6 | 92.4 | 485 | 37 | 0 | 2 | 486 | 68 | 552 | 7.4e-265 | 922.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050502 | MS.gene071130 | 0.804163 | 2.47E-49 | -1.69E-46 |
MS.gene052346 | MS.gene071130 | 0.842335 | 2.75E-58 | -1.69E-46 |
MS.gene053552 | MS.gene071130 | 0.865433 | 5.93E-65 | -1.69E-46 |
MS.gene055909 | MS.gene071130 | 0.811066 | 8.43E-51 | -1.69E-46 |
MS.gene055911 | MS.gene071130 | 0.815576 | 8.61E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071130.t1 | MTR_4g045810 | 92.371 | 485 | 37 | 0 | 2 | 486 | 68 | 552 | 0.0 | 942 |
MS.gene071130.t1 | MTR_2g064425 | 47.844 | 487 | 243 | 7 | 2 | 484 | 76 | 555 | 4.73e-145 | 428 |
MS.gene071130.t1 | MTR_2g065450 | 47.797 | 454 | 228 | 5 | 13 | 462 | 90 | 538 | 8.61e-143 | 422 |
MS.gene071130.t1 | MTR_2g064425 | 45.585 | 487 | 239 | 8 | 2 | 484 | 76 | 540 | 2.18e-132 | 395 |
MS.gene071130.t1 | MTR_8g057020 | 42.739 | 482 | 266 | 7 | 6 | 483 | 82 | 557 | 3.04e-125 | 377 |
MS.gene071130.t1 | MTR_2g089130 | 40.781 | 461 | 258 | 4 | 7 | 460 | 60 | 512 | 5.03e-113 | 345 |
MS.gene071130.t1 | MTR_4g081460 | 38.494 | 478 | 284 | 5 | 13 | 483 | 56 | 530 | 3.60e-112 | 343 |
MS.gene071130.t1 | MTR_2g089120 | 39.565 | 460 | 263 | 5 | 8 | 460 | 62 | 513 | 1.98e-111 | 341 |
MS.gene071130.t1 | MTR_7g010710 | 40.693 | 462 | 264 | 6 | 29 | 485 | 69 | 525 | 2.15e-110 | 338 |
MS.gene071130.t1 | MTR_6g008560 | 36.498 | 474 | 296 | 2 | 13 | 482 | 52 | 524 | 1.15e-103 | 321 |
MS.gene071130.t1 | MTR_6g039440 | 34.369 | 483 | 313 | 2 | 3 | 482 | 39 | 520 | 1.72e-103 | 320 |
MS.gene071130.t1 | MTR_4g048460 | 38.105 | 475 | 286 | 5 | 13 | 482 | 57 | 528 | 8.30e-103 | 318 |
MS.gene071130.t1 | MTR_2g082010 | 37.449 | 494 | 291 | 9 | 3 | 485 | 52 | 538 | 1.47e-101 | 316 |
MS.gene071130.t1 | MTR_2g064425 | 50.588 | 340 | 158 | 6 | 2 | 337 | 76 | 409 | 2.55e-101 | 311 |
MS.gene071130.t1 | MTR_5g062230 | 35.307 | 473 | 302 | 2 | 13 | 482 | 49 | 520 | 8.59e-99 | 308 |
MS.gene071130.t1 | MTR_3g464190 | 35.865 | 474 | 299 | 3 | 13 | 482 | 52 | 524 | 1.69e-94 | 297 |
MS.gene071130.t1 | MTR_8g007515 | 37.657 | 478 | 289 | 6 | 14 | 484 | 50 | 525 | 2.04e-94 | 297 |
MS.gene071130.t1 | MTR_4g092010 | 34.959 | 492 | 289 | 11 | 9 | 483 | 54 | 531 | 4.85e-94 | 296 |
MS.gene071130.t1 | MTR_2g081980 | 37.083 | 480 | 290 | 8 | 14 | 484 | 50 | 526 | 9.86e-94 | 295 |
MS.gene071130.t1 | MTR_5g094620 | 33.540 | 483 | 298 | 3 | 3 | 482 | 42 | 504 | 2.00e-93 | 293 |
MS.gene071130.t1 | MTR_4g048460 | 39.512 | 410 | 240 | 5 | 13 | 417 | 57 | 463 | 6.11e-91 | 285 |
MS.gene071130.t1 | MTR_2g064425 | 47.353 | 340 | 154 | 7 | 2 | 337 | 76 | 394 | 8.11e-89 | 278 |
MS.gene071130.t1 | MTR_5g073200 | 35.789 | 475 | 300 | 3 | 13 | 483 | 44 | 517 | 1.00e-87 | 279 |
MS.gene071130.t1 | MTR_2g082060 | 36.307 | 482 | 280 | 11 | 14 | 484 | 57 | 522 | 7.93e-87 | 277 |
MS.gene071130.t1 | MTR_5g073260 | 35.073 | 479 | 297 | 6 | 13 | 482 | 46 | 519 | 8.64e-87 | 277 |
MS.gene071130.t1 | MTR_6g008560 | 37.127 | 369 | 231 | 1 | 114 | 482 | 1 | 368 | 8.39e-82 | 259 |
MS.gene071130.t1 | MTR_2g010960 | 33.200 | 500 | 307 | 12 | 3 | 483 | 2 | 493 | 1.41e-77 | 252 |
MS.gene071130.t1 | MTR_4g092020 | 33.758 | 471 | 300 | 7 | 19 | 483 | 77 | 541 | 2.76e-77 | 252 |
MS.gene071130.t1 | MTR_3g063170 | 33.469 | 490 | 314 | 10 | 3 | 483 | 2 | 488 | 9.55e-76 | 247 |
MS.gene071130.t1 | MTR_6g064980 | 32.857 | 490 | 317 | 10 | 3 | 483 | 2 | 488 | 1.08e-75 | 247 |
MS.gene071130.t1 | MTR_4g019550 | 34.694 | 490 | 281 | 13 | 14 | 484 | 58 | 527 | 2.94e-75 | 247 |
MS.gene071130.t1 | MTR_3g465090 | 33.266 | 493 | 311 | 12 | 3 | 483 | 2 | 488 | 4.29e-75 | 245 |
MS.gene071130.t1 | MTR_3g063120 | 34.409 | 465 | 287 | 10 | 31 | 483 | 6 | 464 | 1.16e-74 | 243 |
MS.gene071130.t1 | MTR_3g063140 | 32.653 | 490 | 318 | 10 | 3 | 483 | 2 | 488 | 3.52e-74 | 243 |
MS.gene071130.t1 | MTR_3g052120 | 32.317 | 492 | 317 | 11 | 3 | 483 | 2 | 488 | 4.14e-70 | 232 |
MS.gene071130.t1 | MTR_2g082050 | 31.950 | 482 | 265 | 9 | 9 | 484 | 4 | 428 | 8.15e-68 | 224 |
MS.gene071130.t1 | MTR_6g065040 | 35.606 | 396 | 238 | 9 | 95 | 483 | 1 | 386 | 2.54e-66 | 219 |
MS.gene071130.t1 | MTR_5g081730 | 81.818 | 110 | 15 | 1 | 111 | 215 | 2 | 111 | 3.49e-54 | 179 |
MS.gene071130.t1 | MTR_3g058160 | 29.385 | 439 | 272 | 13 | 29 | 439 | 66 | 494 | 8.81e-42 | 157 |
MS.gene071130.t1 | MTR_2g064295 | 29.493 | 434 | 278 | 12 | 29 | 439 | 257 | 685 | 9.93e-42 | 159 |
MS.gene071130.t1 | MTR_2g012870 | 31.891 | 439 | 264 | 16 | 23 | 437 | 249 | 676 | 4.20e-41 | 157 |
MS.gene071130.t1 | MTR_3g058160 | 29.385 | 439 | 272 | 13 | 29 | 439 | 257 | 685 | 4.47e-41 | 157 |
MS.gene071130.t1 | MTR_3g058160 | 29.385 | 439 | 272 | 13 | 29 | 439 | 270 | 698 | 5.38e-41 | 157 |
MS.gene071130.t1 | MTR_3g058160 | 29.385 | 439 | 272 | 13 | 29 | 439 | 277 | 705 | 5.41e-41 | 157 |
MS.gene071130.t1 | MTR_2g012900 | 30.088 | 452 | 269 | 14 | 23 | 437 | 249 | 690 | 3.61e-38 | 149 |
MS.gene071130.t1 | MTR_3g058160 | 27.391 | 460 | 275 | 13 | 29 | 439 | 277 | 726 | 1.73e-37 | 147 |
MS.gene071130.t1 | MTR_3g063160 | 32.192 | 292 | 190 | 7 | 3 | 289 | 2 | 290 | 2.60e-33 | 128 |
MS.gene071130.t1 | MTR_7g011663 | 29.050 | 358 | 206 | 12 | 31 | 350 | 349 | 696 | 1.71e-26 | 114 |
MS.gene071130.t1 | MTR_7g050990 | 38.255 | 149 | 82 | 1 | 155 | 303 | 25 | 163 | 1.53e-25 | 111 |
MS.gene071130.t1 | MTR_5g094530 | 30.660 | 212 | 106 | 4 | 127 | 334 | 4 | 178 | 1.07e-22 | 95.9 |
MS.gene071130.t1 | MTR_7g094970 | 27.636 | 275 | 158 | 9 | 31 | 272 | 211 | 477 | 2.62e-22 | 100 |
MS.gene071130.t1 | MTR_5g030050 | 27.612 | 268 | 148 | 10 | 31 | 268 | 3 | 254 | 1.92e-20 | 92.4 |
MS.gene071130.t1 | MTR_7g011770 | 26.944 | 360 | 211 | 14 | 31 | 350 | 245 | 592 | 1.52e-19 | 92.4 |
MS.gene071130.t1 | MTR_7g057340 | 25.180 | 139 | 104 | 0 | 344 | 482 | 1 | 139 | 2.89e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071130.t1 | AT3G25830 | 42.213 | 488 | 264 | 9 | 13 | 486 | 81 | 564 | 2.16e-128 | 386 |
MS.gene071130.t1 | AT3G25820 | 42.213 | 488 | 264 | 9 | 13 | 486 | 81 | 564 | 2.16e-128 | 386 |
MS.gene071130.t1 | AT3G25810 | 43.579 | 475 | 243 | 9 | 29 | 486 | 101 | 567 | 4.31e-126 | 380 |
MS.gene071130.t1 | AT2G24210 | 41.104 | 489 | 265 | 10 | 13 | 486 | 80 | 560 | 4.88e-123 | 372 |
MS.gene071130.t1 | AT4G16730 | 39.381 | 485 | 279 | 6 | 14 | 486 | 28 | 509 | 2.33e-122 | 368 |
MS.gene071130.t1 | AT4G16730 | 39.700 | 466 | 268 | 5 | 31 | 486 | 1 | 463 | 3.30e-120 | 361 |
MS.gene071130.t1 | AT4G16740 | 41.379 | 493 | 264 | 9 | 7 | 486 | 54 | 534 | 1.29e-119 | 362 |
MS.gene071130.t1 | AT3G25820 | 43.931 | 346 | 180 | 7 | 13 | 348 | 81 | 422 | 1.93e-91 | 285 |
MS.gene071130.t1 | AT4G16740 | 44.675 | 338 | 168 | 6 | 7 | 332 | 54 | 384 | 6.54e-86 | 270 |
MS.gene071130.t1 | AT5G23960 | 35.570 | 447 | 269 | 7 | 24 | 462 | 58 | 493 | 2.05e-83 | 268 |
MS.gene071130.t1 | AT1G61680 | 33.333 | 459 | 295 | 5 | 29 | 482 | 94 | 546 | 4.36e-82 | 265 |
MS.gene071130.t1 | AT5G23960 | 34.468 | 470 | 287 | 9 | 24 | 483 | 58 | 516 | 1.81e-81 | 263 |
MS.gene071130.t1 | AT1G70080 | 34.753 | 446 | 275 | 6 | 27 | 462 | 118 | 557 | 1.31e-79 | 259 |
MS.gene071130.t1 | AT1G61680 | 32.680 | 459 | 291 | 6 | 29 | 482 | 94 | 539 | 1.36e-78 | 256 |
MS.gene071130.t1 | AT3G29410 | 31.291 | 457 | 309 | 4 | 29 | 483 | 13 | 466 | 9.15e-77 | 249 |
MS.gene071130.t1 | AT3G29410 | 31.291 | 457 | 309 | 4 | 29 | 483 | 118 | 571 | 1.41e-75 | 249 |
MS.gene071130.t1 | AT5G44630 | 33.630 | 449 | 283 | 7 | 22 | 462 | 63 | 504 | 1.93e-71 | 237 |
MS.gene071130.t1 | AT1G31950 | 31.148 | 427 | 287 | 3 | 29 | 451 | 118 | 541 | 2.57e-71 | 238 |
MS.gene071130.t1 | AT1G31950 | 31.148 | 427 | 287 | 3 | 29 | 451 | 119 | 542 | 2.71e-71 | 238 |
MS.gene071130.t1 | AT4G16740 | 42.722 | 316 | 162 | 6 | 7 | 310 | 54 | 362 | 3.45e-71 | 231 |
MS.gene071130.t1 | AT4G16740 | 42.722 | 316 | 162 | 6 | 7 | 310 | 54 | 362 | 3.45e-71 | 231 |
MS.gene071130.t1 | AT3G14490 | 30.364 | 494 | 327 | 8 | 4 | 485 | 82 | 570 | 4.52e-70 | 234 |
MS.gene071130.t1 | AT3G25820 | 43.706 | 286 | 147 | 7 | 13 | 288 | 81 | 362 | 1.54e-69 | 227 |
MS.gene071130.t1 | AT3G25820 | 43.706 | 286 | 147 | 7 | 13 | 288 | 81 | 362 | 1.54e-69 | 227 |
MS.gene071130.t1 | AT4G15870 | 33.411 | 428 | 267 | 7 | 38 | 462 | 132 | 544 | 7.52e-69 | 231 |
MS.gene071130.t1 | AT3G14520 | 29.873 | 472 | 314 | 6 | 8 | 467 | 88 | 554 | 2.79e-68 | 229 |
MS.gene071130.t1 | AT3G14540 | 30.238 | 463 | 306 | 6 | 1 | 451 | 79 | 536 | 3.38e-68 | 229 |
MS.gene071130.t1 | AT1G33750 | 30.989 | 455 | 308 | 4 | 31 | 483 | 121 | 571 | 8.36e-67 | 226 |
MS.gene071130.t1 | AT4G20230 | 31.042 | 451 | 302 | 6 | 38 | 483 | 126 | 572 | 8.47e-66 | 223 |
MS.gene071130.t1 | AT4G20230 | 31.042 | 451 | 302 | 6 | 38 | 483 | 138 | 584 | 1.03e-65 | 223 |
MS.gene071130.t1 | AT1G48800 | 33.333 | 462 | 276 | 12 | 25 | 468 | 114 | 561 | 6.20e-63 | 215 |
MS.gene071130.t1 | AT4G20200 | 30.704 | 469 | 310 | 7 | 23 | 483 | 111 | 572 | 1.31e-61 | 212 |
MS.gene071130.t1 | AT4G13300 | 29.876 | 482 | 321 | 9 | 13 | 483 | 46 | 521 | 7.88e-61 | 209 |
MS.gene071130.t1 | AT1G31950 | 30.357 | 392 | 266 | 3 | 29 | 416 | 119 | 507 | 1.12e-60 | 207 |
MS.gene071130.t1 | AT3G29190 | 30.022 | 453 | 310 | 5 | 23 | 471 | 108 | 557 | 1.33e-60 | 209 |
MS.gene071130.t1 | AT3G32030 | 27.181 | 493 | 346 | 5 | 1 | 483 | 82 | 571 | 3.95e-60 | 208 |
MS.gene071130.t1 | AT4G20210 | 32.237 | 456 | 288 | 12 | 38 | 482 | 122 | 567 | 1.28e-58 | 204 |
MS.gene071130.t1 | AT3G14540 | 29.439 | 428 | 285 | 6 | 1 | 416 | 79 | 501 | 4.52e-58 | 200 |
MS.gene071130.t1 | AT4G13280 | 29.018 | 448 | 308 | 6 | 41 | 483 | 79 | 521 | 9.79e-57 | 197 |
MS.gene071130.t1 | AT1G66020 | 29.614 | 466 | 319 | 6 | 23 | 483 | 105 | 566 | 9.39e-56 | 196 |
MS.gene071130.t1 | AT1G48820 | 32.426 | 441 | 242 | 13 | 38 | 468 | 124 | 518 | 3.33e-55 | 194 |
MS.gene071130.t1 | AT2G23230 | 29.783 | 460 | 310 | 7 | 13 | 462 | 90 | 546 | 7.24e-54 | 191 |
MS.gene071130.t1 | AT3G29110 | 30.303 | 429 | 292 | 5 | 38 | 462 | 119 | 544 | 4.77e-53 | 188 |
MS.gene071130.t1 | AT2G23230 | 30.065 | 459 | 305 | 8 | 13 | 462 | 90 | 541 | 5.79e-53 | 188 |
MS.gene071130.t1 | AT4G13280 | 28.348 | 448 | 281 | 8 | 41 | 483 | 79 | 491 | 1.73e-47 | 172 |
MS.gene071130.t1 | AT5G48110 | 33.106 | 293 | 185 | 5 | 174 | 458 | 2 | 291 | 7.11e-44 | 158 |
MS.gene071130.t1 | AT1G66020 | 34.146 | 287 | 180 | 6 | 23 | 304 | 105 | 387 | 1.18e-37 | 143 |
MS.gene071130.t1 | AT1G79460 | 31.649 | 376 | 230 | 12 | 29 | 381 | 275 | 646 | 1.22e-37 | 147 |
MS.gene071130.t1 | AT1G61120 | 27.991 | 468 | 284 | 16 | 23 | 458 | 280 | 726 | 6.52e-36 | 142 |
MS.gene071130.t1 | AT4G02780 | 32.222 | 270 | 142 | 10 | 31 | 267 | 334 | 595 | 1.87e-23 | 104 |
Find 85 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGACATTTATGATGTTTA+TGG | 0.162881 | 4.3:+52125016 | MS.gene071130:CDS |
ATGAAACTGCCTTAAGATTT+AGG | 0.186680 | 4.3:+52122885 | MS.gene071130:CDS |
TTGAGGTAGTCATCAAATTT+TGG | 0.199877 | 4.3:-52126087 | None:intergenic |
TTATGAAGGAGAACAAATTT+TGG | 0.222041 | 4.3:+52123978 | MS.gene071130:CDS |
CACAATGTTGAAATTCAATT+TGG | 0.223651 | 4.3:-52124190 | None:intergenic |
GGCTAATGGAATGTTTCTTT+TGG | 0.253920 | 4.3:+52124909 | MS.gene071130:CDS |
ATCATAAATGTCATCAATTA+AGG | 0.255486 | 4.3:-52125008 | None:intergenic |
TTAACATTCCTTTGATATCT+TGG | 0.275349 | 4.3:-52123930 | None:intergenic |
GGAAGTAAGAAGAATGATTA+AGG | 0.279467 | 4.3:+52122715 | MS.gene071130:CDS |
TTTAGGCTCCTTCGACAATA+TGG | 0.303451 | 4.3:+52122902 | MS.gene071130:CDS |
GTATATGAAGATATTCTTCT+TGG | 0.341174 | 4.3:+52125310 | MS.gene071130:CDS |
TAATGCAATTCAAATTCTTC+CGG | 0.348756 | 4.3:+52125286 | MS.gene071130:CDS |
TGCAGTGGTTCAAACAATAT+TGG | 0.363548 | 4.3:+52122851 | MS.gene071130:CDS |
TACCTTCACTAAGTTCTTTG+AGG | 0.366233 | 4.3:-52124029 | None:intergenic |
ATATGCTACATGAATGAAAA+TGG | 0.368865 | 4.3:+52126434 | MS.gene071130:CDS |
AAAGGAGGGGCTTGAGTACT+TGG | 0.380341 | 4.3:+52126182 | MS.gene071130:CDS |
AGATAGGAGAAGCCTTTGAT+AGG | 0.389550 | 4.3:+52122810 | MS.gene071130:CDS |
TGATCAAGTGAATCATTCAT+TGG | 0.390845 | 4.3:+52124068 | MS.gene071130:CDS |
ACCATCGAGTTTCAAGACTT+TGG | 0.414873 | 4.3:-52124113 | None:intergenic |
TATGACACACTTAAAGAAAC+AGG | 0.415257 | 4.3:+52125362 | MS.gene071130:CDS |
GGTAATTAGAGAGGAAACTT+TGG | 0.415262 | 4.3:-52124987 | None:intergenic |
CACGACCAAAGCTTAACCTT+GGG | 0.417065 | 4.3:-52124883 | None:intergenic |
ACATATGAAGGTGGTGGAAG+GGG | 0.417594 | 4.3:+52124849 | MS.gene071130:intron |
GGTTAAGCTTTGGTCGTGAT+AGG | 0.419053 | 4.3:+52124888 | MS.gene071130:CDS |
CTTTGGTCGTGATAGGCTAA+TGG | 0.425070 | 4.3:+52124895 | MS.gene071130:CDS |
TATCAATTCGAAAAGGAGAT+AGG | 0.437146 | 4.3:+52122794 | MS.gene071130:CDS |
GACGGTCTCTGCAACAATAT+AGG | 0.442085 | 4.3:-52126213 | None:intergenic |
TCACTAAACTGAGGCTCAAA+TGG | 0.444620 | 4.3:-52124947 | None:intergenic |
TGTGCAATCAACTCTTCAAC+AGG | 0.451044 | 4.3:+52124209 | MS.gene071130:CDS |
ATGAAGGTGGTGGAAGGGGA+TGG | 0.461912 | 4.3:+52124853 | MS.gene071130:intron |
CAATGATTTGGCTACTTCAT+CGG | 0.474012 | 4.3:+52126254 | MS.gene071130:CDS |
TCGAAGGAGCCTAAATCTTA+AGG | 0.477296 | 4.3:-52122894 | None:intergenic |
CTAGCCCCAAGGTTAAGCTT+TGG | 0.484468 | 4.3:+52124878 | MS.gene071130:CDS |
TGAAGGTGGTGGAAGGGGAT+GGG | 0.505139 | 4.3:+52124854 | MS.gene071130:intron |
AATGCATGGGTGTCTGTCTC+CGG | 0.505741 | 4.3:+52126111 | MS.gene071130:CDS |
GCATCATTTCTATCTTATGA+AGG | 0.509979 | 4.3:+52123964 | MS.gene071130:CDS |
CTTCACTAAGTTCTTTGAGG+TGG | 0.519302 | 4.3:-52124026 | None:intergenic |
TACATATGAAGGTGGTGGAA+GGG | 0.538647 | 4.3:+52124848 | MS.gene071130:intron |
TCACGACCAAAGCTTAACCT+TGG | 0.543926 | 4.3:-52124884 | None:intergenic |
AAGAATATCTTCATATACTC+CGG | 0.545115 | 4.3:-52125305 | None:intergenic |
TCTCAGTTATCAATTCGAAA+AGG | 0.545405 | 4.3:+52122787 | MS.gene071130:CDS |
TTACATATGAAGGTGGTGGA+AGG | 0.555487 | 4.3:+52124847 | MS.gene071130:intron |
ATCAATTAAGGTAATTAGAG+AGG | 0.557226 | 4.3:-52124996 | None:intergenic |
TTGTAGGCGGAGTTAGAAAG+AGG | 0.558058 | 4.3:+52126392 | MS.gene071130:intron |
CTCGATACGTGGATAGGAGT+AGG | 0.559477 | 4.3:+52122681 | MS.gene071130:CDS |
TATGGTTATGATGTTTCACC+AGG | 0.562009 | 4.3:+52122920 | MS.gene071130:CDS |
TAGGAGTAGGAGGATGCAAG+AGG | 0.567410 | 4.3:+52122694 | MS.gene071130:CDS |
CTTTGGACTCTACGATGTAG+TGG | 0.570277 | 4.3:-52124096 | None:intergenic |
TCAGTTTAGTGATATGCGCA+AGG | 0.571438 | 4.3:+52124958 | MS.gene071130:CDS |
ATGACTACCTCAACAATGCA+TGG | 0.572804 | 4.3:+52126097 | MS.gene071130:CDS |
AATGATTCACTTGATCAAAG+AGG | 0.573638 | 4.3:-52124062 | None:intergenic |
TCCAAAGTCTTGAAACTCGA+TGG | 0.575055 | 4.3:+52124112 | MS.gene071130:CDS |
CATTTCTACAAGAAGCAAGA+TGG | 0.579905 | 4.3:+52126046 | MS.gene071130:CDS |
AATCGTAACATAACAAAGGA+GGG | 0.583261 | 4.3:+52126168 | MS.gene071130:CDS |
CAGTTTAGTGATATGCGCAA+GGG | 0.586945 | 4.3:+52124959 | MS.gene071130:CDS |
AGGATGCTCGATACGTGGAT+AGG | 0.588378 | 4.3:+52122675 | MS.gene071130:intron |
ATCGATACTGTGAAACACTT+AGG | 0.593154 | 4.3:+52122764 | MS.gene071130:CDS |
GCGGAGTTAGAAAGAGGTGA+AGG | 0.597815 | 4.3:+52126398 | MS.gene071130:CDS |
CATCATAACCATATTGTCGA+AGG | 0.601484 | 4.3:-52122910 | None:intergenic |
TCATACCGCTTTGACAAGGT+AGG | 0.603491 | 4.3:-52125399 | None:intergenic |
ATCGTAACATAACAAAGGAG+GGG | 0.606500 | 4.3:+52126169 | MS.gene071130:CDS |
GCTAAATCGTAACATAACAA+AGG | 0.606945 | 4.3:+52126164 | MS.gene071130:CDS |
TTATGATGTTTATGGCACCT+TGG | 0.611011 | 4.3:+52125024 | MS.gene071130:CDS |
AAATCGTAACATAACAAAGG+AGG | 0.612370 | 4.3:+52126167 | MS.gene071130:CDS |
CATACCGCTTTGACAAGGTA+GGG | 0.613885 | 4.3:-52125398 | None:intergenic |
TGTCTTGTCCAAGATATCAA+AGG | 0.617651 | 4.3:+52123922 | MS.gene071130:CDS |
TTTCTAGGATGCTCGATACG+TGG | 0.619384 | 4.3:+52122670 | MS.gene071130:intron |
AGGGGATGGGACTAGCCCCA+AGG | 0.624304 | 4.3:+52124867 | MS.gene071130:CDS |
CACCTCAAAGAACTTAGTGA+AGG | 0.629751 | 4.3:+52124027 | MS.gene071130:CDS |
GAATGAAAATGGTGTTAGTG+AGG | 0.637998 | 4.3:+52126445 | MS.gene071130:CDS |
TCTTCCCTACCTTGTCAAAG+CGG | 0.642377 | 4.3:+52125394 | MS.gene071130:CDS |
TGCAGTGAGAAATTCTAGCA+AGG | 0.643300 | 4.3:-52126580 | None:intergenic |
AGGATCTTAAAGAAACGTCA+AGG | 0.646273 | 4.3:+52124229 | MS.gene071130:CDS |
ATGCCTTAAAATCTCCGTTG+TGG | 0.655650 | 4.3:-52123900 | None:intergenic |
TTGGTCATACCGCTTTGACA+AGG | 0.662027 | 4.3:-52125403 | None:intergenic |
GATACGTGGATAGGAGTAGG+AGG | 0.665547 | 4.3:+52122684 | MS.gene071130:CDS |
GTGGATGCTAGTGAAAGCAT+TGG | 0.666886 | 4.3:-52124007 | None:intergenic |
CAGACACCCATGCATTGTTG+AGG | 0.669111 | 4.3:-52126104 | None:intergenic |
TGAAAATGGTGTTAGTGAGG+AGG | 0.675695 | 4.3:+52126448 | MS.gene071130:CDS |
TGACTACCTCAACAATGCAT+GGG | 0.680426 | 4.3:+52126098 | MS.gene071130:CDS |
ATGGGTGAGTAAAACTACAC+CGG | 0.689202 | 4.3:-52126130 | None:intergenic |
ACGACCAAAGCTTAACCTTG+GGG | 0.696222 | 4.3:-52124882 | None:intergenic |
TTGCGCATATCACTAAACTG+AGG | 0.729129 | 4.3:-52124956 | None:intergenic |
GAGATGTTTAAGGACCACAA+CGG | 0.742734 | 4.3:+52123886 | MS.gene071130:CDS |
AGGAATGTTAAGTCTCTACG+AGG | 0.767381 | 4.3:+52123942 | MS.gene071130:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 52118191 | 52126603 | 52118191 | ID=MS.gene071130 |
chr4.3 | mRNA | 52118191 | 52126603 | 52118191 | ID=MS.gene071130.t1;Parent=MS.gene071130 |
chr4.3 | exon | 52118191 | 52118196 | 52118191 | ID=MS.gene071130.t1.exon1;Parent=MS.gene071130.t1 |
chr4.3 | CDS | 52118191 | 52118196 | 52118191 | ID=cds.MS.gene071130.t1;Parent=MS.gene071130.t1 |
chr4.3 | exon | 52122677 | 52122941 | 52122677 | ID=MS.gene071130.t1.exon2;Parent=MS.gene071130.t1 |
chr4.3 | CDS | 52122677 | 52122941 | 52122677 | ID=cds.MS.gene071130.t1;Parent=MS.gene071130.t1 |
chr4.3 | exon | 52123878 | 52124250 | 52123878 | ID=MS.gene071130.t1.exon3;Parent=MS.gene071130.t1 |
chr4.3 | CDS | 52123878 | 52124250 | 52123878 | ID=cds.MS.gene071130.t1;Parent=MS.gene071130.t1 |
chr4.3 | exon | 52124859 | 52125080 | 52124859 | ID=MS.gene071130.t1.exon4;Parent=MS.gene071130.t1 |
chr4.3 | CDS | 52124859 | 52125080 | 52124859 | ID=cds.MS.gene071130.t1;Parent=MS.gene071130.t1 |
chr4.3 | exon | 52125277 | 52125415 | 52125277 | ID=MS.gene071130.t1.exon5;Parent=MS.gene071130.t1 |
chr4.3 | CDS | 52125277 | 52125415 | 52125277 | ID=cds.MS.gene071130.t1;Parent=MS.gene071130.t1 |
chr4.3 | exon | 52126027 | 52126275 | 52126027 | ID=MS.gene071130.t1.exon6;Parent=MS.gene071130.t1 |
chr4.3 | CDS | 52126027 | 52126275 | 52126027 | ID=cds.MS.gene071130.t1;Parent=MS.gene071130.t1 |
chr4.3 | exon | 52126398 | 52126603 | 52126398 | ID=MS.gene071130.t1.exon7;Parent=MS.gene071130.t1 |
chr4.3 | CDS | 52126398 | 52126603 | 52126398 | ID=cds.MS.gene071130.t1;Parent=MS.gene071130.t1 |
Gene Sequence |
Protein sequence |