AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071212

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071212.t1 MTR_7g013140 94.024 251 15 0 1 251 1 251 9.67e-180 493
MS.gene071212.t1 MTR_7g013150 81.818 253 44 1 1 251 1 253 1.99e-159 442
MS.gene071212.t1 MTR_7g013120 76.285 253 58 2 1 251 1 253 2.38e-146 409
MS.gene071212.t1 MTR_8g058990 73.518 253 65 1 1 251 1 253 7.71e-138 387
MS.gene071212.t1 MTR_8g464350 70.079 254 73 2 1 251 1 254 3.90e-130 368
MS.gene071212.t1 MTR_3g094060 58.921 241 94 3 10 247 12 250 8.80e-98 286
MS.gene071212.t1 MTR_3g094040 56.627 249 102 4 3 247 4 250 1.49e-97 286
MS.gene071212.t1 MTR_7g061720 61.261 222 84 1 28 247 32 253 3.10e-97 285
MS.gene071212.t1 MTR_5g079950 54.331 254 109 2 1 247 1 254 3.54e-97 285
MS.gene071212.t1 MTR_2g097030 59.910 222 87 1 28 247 34 255 5.56e-96 282
MS.gene071212.t1 MTR_5g075320 55.600 250 103 4 4 248 3 249 1.14e-95 281
MS.gene071212.t1 MTR_3g435430 59.910 222 85 2 28 247 25 244 2.07e-93 275
MS.gene071212.t1 MTR_5g041700 54.878 246 104 3 7 247 1 244 1.30e-92 273
MS.gene071212.t1 MTR_3g466760 55.336 253 105 3 1 247 7 257 1.84e-92 273
MS.gene071212.t1 MTR_3g466790 55.336 253 105 3 1 247 1 251 3.30e-92 272
MS.gene071212.t1 MTR_4g081950 53.200 250 107 3 6 247 33 280 1.19e-90 269
MS.gene071212.t1 MTR_7g011060 55.602 241 98 3 7 247 6 237 1.97e-90 267
MS.gene071212.t1 MTR_4g063975 59.009 222 89 1 28 247 32 253 2.19e-90 268
MS.gene071212.t1 MTR_1g085460 57.848 223 88 4 28 245 30 251 3.35e-86 257
MS.gene071212.t1 MTR_1g026020 51.765 255 115 4 1 251 5 255 4.20e-85 254
MS.gene071212.t1 MTR_0040s0140 48.425 254 125 2 1 248 1 254 2.84e-84 252
MS.gene071212.t1 MTR_2g090255 48.178 247 123 2 7 248 4 250 5.58e-84 251
MS.gene071212.t1 MTR_4g124340 51.556 225 104 3 27 248 60 282 1.02e-83 251
MS.gene071212.t1 MTR_7g111010 49.020 255 123 5 3 251 1 254 1.64e-82 248
MS.gene071212.t1 MTR_7g110990 53.275 229 101 4 28 251 12 239 5.82e-82 246
MS.gene071212.t1 MTR_5g076950 54.464 224 99 2 27 248 40 262 6.30e-82 246
MS.gene071212.t1 MTR_5g011210 49.213 254 119 5 7 251 10 262 1.26e-79 240
MS.gene071212.t1 MTR_6g012520 54.772 241 100 3 7 247 8 239 2.03e-79 239
MS.gene071212.t1 MTR_4g102450 49.004 251 118 5 10 251 12 261 2.40e-77 234
MS.gene071212.t1 MTR_0008s0120 49.020 255 70 4 1 251 1 199 4.74e-75 226
MS.gene071212.t1 MTR_3g064510 47.863 234 107 6 27 248 52 282 1.44e-70 218
MS.gene071212.t1 MTR_2g090270 32.500 240 138 8 24 251 31 258 5.00e-31 115
MS.gene071212.t1 MTR_2g090265 30.970 268 154 11 3 251 1 256 5.37e-31 115
MS.gene071212.t1 MTR_0122s0020 31.559 263 154 9 1 251 16 264 3.98e-29 110
MS.gene071212.t1 MTR_6g012500 54.639 97 44 0 151 247 181 277 1.42e-27 107
MS.gene071212.t1 MTR_0809s0010 31.120 241 134 11 27 251 46 270 2.88e-24 98.2
MS.gene071212.t1 MTR_4g028640 30.522 249 142 12 18 251 32 264 2.13e-21 90.5
MS.gene071212.t1 MTR_4g099370 27.686 242 156 9 14 246 14 245 7.87e-21 88.6
MS.gene071212.t1 MTR_5g013440 28.063 253 151 11 14 251 15 251 3.98e-19 84.0
MS.gene071212.t1 MTR_0118s0070 26.923 234 145 9 33 251 53 275 4.01e-18 81.6
MS.gene071212.t1 MTR_4g075790 27.711 249 145 10 16 248 11 240 4.28e-18 81.3
MS.gene071212.t1 MTR_0122s0020 32.768 177 96 7 24 189 37 201 3.45e-17 77.8
MS.gene071212.t1 MTR_4g098930 25.000 256 160 10 7 246 8 247 1.71e-11 62.8
MS.gene071212.t1 MTR_1g085365 54.902 51 23 0 195 245 4 54 1.73e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071212.t1 AT5G39280 60.456 263 90 2 1 251 15 275 6.69e-119 340
MS.gene071212.t1 AT5G39300 67.686 229 72 1 23 251 50 276 2.84e-118 339
MS.gene071212.t1 AT5G39290 66.667 228 74 1 24 251 54 279 2.73e-116 334
MS.gene071212.t1 AT5G39270 67.105 228 73 1 24 251 54 279 5.10e-116 333
MS.gene071212.t1 AT5G02260 62.162 222 82 1 28 247 32 253 3.31e-102 298
MS.gene071212.t1 AT5G39310 62.667 225 81 2 28 251 90 312 3.27e-101 297
MS.gene071212.t1 AT5G56320 57.613 243 99 2 7 247 8 248 5.37e-100 292
MS.gene071212.t1 AT5G56320 57.613 243 99 2 7 247 8 248 5.37e-100 292
MS.gene071212.t1 AT5G56320 57.613 243 99 2 7 247 8 248 5.00e-99 291
MS.gene071212.t1 AT2G37640 60.811 222 85 1 28 247 36 257 3.51e-98 288
MS.gene071212.t1 AT2G39700 60.811 222 85 1 28 247 31 252 1.18e-97 286
MS.gene071212.t1 AT2G40610 58.091 241 96 3 10 247 12 250 1.84e-96 283
MS.gene071212.t1 AT5G39260 59.227 233 87 3 20 251 37 262 2.49e-95 280
MS.gene071212.t1 AT3G55500 54.762 252 105 3 5 247 4 255 8.18e-95 279
MS.gene071212.t1 AT2G03090 56.148 244 102 3 7 247 8 249 8.62e-94 276
MS.gene071212.t1 AT5G05290 61.435 223 81 3 28 247 32 252 1.40e-93 276
MS.gene071212.t1 AT1G69530 57.627 236 94 3 14 247 15 246 1.54e-93 275
MS.gene071212.t1 AT1G69530 57.627 236 94 3 14 247 15 246 1.54e-93 275
MS.gene071212.t1 AT1G69530 57.692 234 93 3 14 245 15 244 7.07e-93 275
MS.gene071212.t1 AT2G28950 59.009 222 89 1 28 247 31 252 2.52e-92 273
MS.gene071212.t1 AT2G37640 60.476 210 81 1 40 247 23 232 4.18e-91 269
MS.gene071212.t1 AT1G26770 54.918 244 102 3 10 247 4 245 3.28e-89 264
MS.gene071212.t1 AT1G26770 54.918 244 102 3 10 247 14 255 5.73e-89 264
MS.gene071212.t1 AT3G29030 58.636 220 84 2 28 247 38 250 2.01e-88 263
MS.gene071212.t1 AT4G01630 52.000 250 113 5 7 251 8 255 3.50e-85 254
MS.gene071212.t1 AT1G12560 52.423 227 103 4 28 251 37 261 5.97e-85 254
MS.gene071212.t1 AT1G20190 53.540 226 100 3 30 251 28 252 9.70e-81 243
MS.gene071212.t1 AT1G62980 47.581 248 126 3 7 251 10 256 6.74e-80 241
MS.gene071212.t1 AT3G03220 53.363 223 101 2 27 247 39 260 9.60e-80 241
MS.gene071212.t1 AT1G69530 54.884 215 89 4 14 226 15 223 5.97e-78 236
MS.gene071212.t1 AT1G69530 58.462 195 75 3 14 206 15 205 1.83e-77 233
MS.gene071212.t1 AT4G38210 42.449 245 137 2 8 248 8 252 3.57e-74 226
MS.gene071212.t1 AT3G15370 44.706 255 130 7 1 250 1 249 7.59e-68 210
MS.gene071212.t1 AT1G20190 52.850 193 86 3 63 251 2 193 1.07e-65 202
MS.gene071212.t1 AT3G15370 40.351 285 129 9 1 250 1 279 8.67e-62 196
MS.gene071212.t1 AT1G65680 32.645 242 136 11 25 251 44 273 3.36e-27 106
MS.gene071212.t1 AT4G28250 31.667 240 139 9 25 251 33 260 9.73e-27 104
MS.gene071212.t1 AT2G20750 30.797 276 157 12 1 251 1 267 2.72e-26 103
MS.gene071212.t1 AT4G28250 30.962 239 136 9 25 251 33 254 1.42e-24 99.0
MS.gene071212.t1 AT2G45110 29.237 236 140 9 31 251 36 259 1.30e-20 88.2
MS.gene071212.t1 AT1G65681 29.464 224 133 8 41 251 11 222 1.85e-20 87.0
MS.gene071212.t1 AT3G60570 26.437 261 166 7 4 251 10 257 4.30e-18 81.6
MS.gene071212.t1 AT4G17030 26.667 255 171 9 1 248 1 246 2.05e-17 79.3
MS.gene071212.t1 AT3G45970 29.817 218 121 9 47 247 15 217 3.85e-16 75.5
MS.gene071212.t1 AT2G20750 29.717 212 117 10 1 189 1 203 4.01e-15 72.4
MS.gene071212.t1 AT4G28250 29.714 175 96 7 25 189 33 190 2.91e-14 70.1
MS.gene071212.t1 AT4G28250 29.714 175 96 7 25 189 33 190 3.65e-14 69.7
MS.gene071212.t1 AT3G45970 27.442 215 122 9 51 247 46 244 1.58e-13 68.9
MS.gene071212.t1 AT3G45960 28.571 196 107 9 69 247 16 195 4.40e-12 63.9
MS.gene071212.t1 AT3G45960 27.570 214 122 9 51 247 46 243 5.00e-12 64.7

Find 69 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTTCAAATTGGCAATT+TGG 0.156079 7.3:-84653903 MS.gene071212:CDS
GCATGAGCATCGTACCAATT+TGG 0.200212 7.3:+84654879 None:intergenic
TTGGAATATTGGAACGAATT+TGG 0.216299 7.3:-84653991 MS.gene071212:CDS
GTCTAACACTTTGGTTCCTT+TGG 0.256747 7.3:-84654946 MS.gene071212:CDS
CTCCTTCAAATTGGCAATTT+GGG 0.280827 7.3:-84653902 MS.gene071212:CDS
TACGAGGAGCATCATGAAAA+AGG 0.321545 7.3:+84654923 None:intergenic
CGTGTTCCATGCATTAAAAC+TGG 0.322549 7.3:-84654158 MS.gene071212:CDS
ATTCAGTTGCTCCTTCAAAT+TGG 0.331715 7.3:-84653911 MS.gene071212:CDS
GGTTCCTATGTCACGCAATT+GGG 0.335226 7.3:-84654021 MS.gene071212:CDS
CATGAGCATCGTACCAATTT+GGG 0.339274 7.3:+84654880 None:intergenic
GCAGAGGGAGCTTGTGGTTA+TGG 0.345450 7.3:-84654473 MS.gene071212:intron
TGGCTGGCATTGACCCAAAT+TGG 0.353682 7.3:-84654893 MS.gene071212:CDS
TTTGTTGCGGTTATCGTGAT+AGG 0.354832 7.3:+84654314 None:intergenic
AGCACTGCTCTATTCAATAA+TGG 0.360305 7.3:-84654407 MS.gene071212:CDS
GGGTTCCTATGTCACGCAAT+TGG 0.362649 7.3:-84654022 MS.gene071212:CDS
TCAGTGGTCTTGCTGTAATC+TGG 0.378673 7.3:+84654281 None:intergenic
CAATTTGGGCAGACCTTTGA+GGG 0.397290 7.3:-84653888 MS.gene071212:CDS
TGTAGTAACTTGGAATGATA+AGG 0.400793 7.3:+84653959 None:intergenic
TTCATGATGCTCCTCGTAAA+GGG 0.402214 7.3:-84654918 MS.gene071212:CDS
CGACCCACAATGGTGCATAA+AGG 0.404687 7.3:-84654345 MS.gene071212:CDS
GGAACACGTCGATATTTAAC+GGG 0.404956 7.3:+84654173 None:intergenic
AGTATCAAGGGGTCTAATAC+TGG 0.408483 7.3:-84654047 MS.gene071212:CDS
GTGTTCAATGTTGCCAATGC+TGG 0.419882 7.3:-84654086 MS.gene071212:CDS
ACCCGCTGCATCACCGTAGA+AGG 0.421455 7.3:+84654854 None:intergenic
CACCCTTTATGCACCATTGT+GGG 0.424099 7.3:+84654342 None:intergenic
ACAGCAAGACCACTGACATT+TGG 0.434617 7.3:-84654274 MS.gene071212:CDS
GATCTCTTCAAACAAGGGTA+TGG 0.441783 7.3:-84654449 MS.gene071212:CDS
GATGCTCATGCAACCTTCTA+CGG 0.442027 7.3:-84654867 MS.gene071212:CDS
TTCCGTCACTTGTAGTAACT+TGG 0.449920 7.3:+84653949 None:intergenic
GACCCACAATGGTGCATAAA+GGG 0.450130 7.3:-84654344 MS.gene071212:CDS
CTCCTCGTAAAGGGCATGGC+TGG 0.450828 7.3:-84654909 MS.gene071212:CDS
TTTCATGATGCTCCTCGTAA+AGG 0.462175 7.3:-84654919 MS.gene071212:CDS
TGTTTCTCGTGTTAGTATCA+AGG 0.464353 7.3:-84654060 MS.gene071212:CDS
GGGCAGACCTTTGAGGGCAA+TGG 0.465089 7.3:-84653882 MS.gene071212:CDS
TTCAATAATGGATTTACTTG+TGG 0.476193 7.3:-84654395 MS.gene071212:CDS
GCAATTTGGGCAGACCTTTG+AGG 0.481360 7.3:-84653889 MS.gene071212:CDS
TGCCCAAATTGCCAATTTGA+AGG 0.491435 7.3:+84653900 None:intergenic
CATGGCTATGTCTAACACTT+TGG 0.491922 7.3:-84654955 MS.gene071212:CDS
AGGGTATGGGCTTGCAACTA+CGG 0.497920 7.3:-84654435 MS.gene071212:CDS
GTTTCTCGTGTTAGTATCAA+GGG 0.498724 7.3:-84654059 MS.gene071212:CDS
TGGAACACGTCGATATTTAA+CGG 0.500310 7.3:+84654172 None:intergenic
GCACCCTTTATGCACCATTG+TGG 0.503658 7.3:+84654341 None:intergenic
AATATTGGAACGAATTTGGT+AGG 0.506008 7.3:-84653987 MS.gene071212:CDS
TTGTTGCGGTTATCGTGATA+GGG 0.519560 7.3:+84654315 None:intergenic
ACCTTCTACGGTGATGCAGC+GGG 0.524229 7.3:-84654855 MS.gene071212:CDS
AAAATTTCCATTGCCCTCAA+AGG 0.530553 7.3:+84653875 None:intergenic
ATCTCTTCAAACAAGGGTAT+GGG 0.533065 7.3:-84654448 MS.gene071212:CDS
GTTCCTATGTCACGCAATTG+GGG 0.548993 7.3:-84654020 MS.gene071212:CDS
TCAAGGGGTCTAATACTGGA+TGG 0.550792 7.3:-84654043 MS.gene071212:CDS
GGTGTTAGGTTTGAAATCAA+AGG 0.556743 7.3:-84654134 MS.gene071212:CDS
GTGTTCCATGCATTAAAACT+GGG 0.567747 7.3:-84654157 MS.gene071212:CDS
ACGAGAAACATCTCCAGCAT+TGG 0.571727 7.3:+84654073 None:intergenic
TTCCAAGTTACTACAAGTGA+CGG 0.572335 7.3:-84653951 MS.gene071212:CDS
CAAGGGGTCTAATACTGGAT+GGG 0.588570 7.3:-84654042 MS.gene071212:CDS
TATTATGCAGAGGGAGCTTG+TGG 0.589305 7.3:-84654479 MS.gene071212:intron
AACCTTCTACGGTGATGCAG+CGG 0.592492 7.3:-84654856 MS.gene071212:CDS
TATGGTGATCTCTTCAAACA+AGG 0.598795 7.3:-84654455 MS.gene071212:CDS
GATGCTCCTCGTAAAGGGCA+TGG 0.605480 7.3:-84654913 MS.gene071212:CDS
CTTGTGTCGACGACCCACAA+TGG 0.630491 7.3:-84654355 MS.gene071212:CDS
TGCCAGCCATGCCCTTTACG+AGG 0.647367 7.3:+84654907 None:intergenic
TTTCTCGTGTTAGTATCAAG+GGG 0.647748 7.3:-84654058 MS.gene071212:CDS
GTGGTCTTGCTGTAATCTGG+AGG 0.654551 7.3:+84654284 None:intergenic
TTCCTATGTCACGCAATTGG+GGG 0.667015 7.3:-84654019 MS.gene071212:CDS
TTCTACGGTGATGCAGCGGG+TGG 0.667920 7.3:-84654852 MS.gene071212:CDS
TGTTCCATGCATTAAAACTG+GGG 0.668445 7.3:-84654156 MS.gene071212:CDS
AGGGTTGCACCAAATGTCAG+TGG 0.668476 7.3:+84654265 None:intergenic
ATGGTGATCTCTTCAAACAA+GGG 0.669728 7.3:-84654454 MS.gene071212:CDS
GTTCCATGCATTAAAACTGG+GGG 0.703952 7.3:-84654155 MS.gene071212:CDS
GAACACGTCGATATTTAACG+GGG 0.756543 7.3:+84654174 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTATTAGTAAATACA+TGG - chr7.3:84654134-84654153 MS.gene071212:CDS 10.0%
!!! TTTGATATATTTTTTTGTTG+AGG - chr7.3:84654286-84654305 MS.gene071212:CDS 15.0%
! ACCAAAACAAGCAAAAAATT+AGG + chr7.3:84654722-84654741 None:intergenic 25.0%
! ATATATGGTATATTATGCAG+AGG - chr7.3:84654337-84654356 MS.gene071212:CDS 25.0%
! CCAAAACAAGCAAAAAATTA+GGG + chr7.3:84654721-84654740 None:intergenic 25.0%
! TATATGGTATATTATGCAGA+GGG - chr7.3:84654338-84654357 MS.gene071212:CDS 25.0%
!!! TTCAATAATGGATTTACTTG+TGG - chr7.3:84654431-84654450 MS.gene071212:CDS 25.0%
AATATTGGAACGAATTTGGT+AGG - chr7.3:84654839-84654858 MS.gene071212:intron 30.0%
TGTAGTAACTTGGAATGATA+AGG + chr7.3:84654870-84654889 None:intergenic 30.0%
TTGGAATATTGGAACGAATT+TGG - chr7.3:84654835-84654854 MS.gene071212:intron 30.0%
!! CTCAAATCAAAGTGTTTTTG+CGG + chr7.3:84654587-84654606 None:intergenic 30.0%
!!! CCCTAATTTTTTGCTTGTTT+TGG - chr7.3:84654718-84654737 MS.gene071212:intron 30.0%
AAAATTTCCATTGCCCTCAA+AGG + chr7.3:84654954-84654973 None:intergenic 35.0%
AGCACTGCTCTATTCAATAA+TGG - chr7.3:84654419-84654438 MS.gene071212:CDS 35.0%
ATGGTGATCTCTTCAAACAA+GGG - chr7.3:84654372-84654391 MS.gene071212:CDS 35.0%
ATTCAGTTGCTCCTTCAAAT+TGG - chr7.3:84654915-84654934 MS.gene071212:CDS 35.0%
ATTGAGAACAATAGCATGCA+TGG - chr7.3:84654183-84654202 MS.gene071212:CDS 35.0%
CTCCTTCAAATTGGCAATTT+GGG - chr7.3:84654924-84654943 MS.gene071212:CDS 35.0%
GAAACCATGCGTAAGTTATA+GGG - chr7.3:84653998-84654017 MS.gene071212:CDS 35.0%
GTGTTCCATGCATTAAAACT+GGG - chr7.3:84654669-84654688 MS.gene071212:intron 35.0%
GTTTCTCGTGTTAGTATCAA+GGG - chr7.3:84654767-84654786 MS.gene071212:intron 35.0%
TATGGTGATCTCTTCAAACA+AGG - chr7.3:84654371-84654390 MS.gene071212:CDS 35.0%
TCTATTGCTTACGAAAAAGC+AGG - chr7.3:84654623-84654642 MS.gene071212:intron 35.0%
TGAAACCATGCGTAAGTTAT+AGG - chr7.3:84653997-84654016 MS.gene071212:CDS 35.0%
TGGAACACGTCGATATTTAA+CGG + chr7.3:84654657-84654676 None:intergenic 35.0%
TGTTCCATGCATTAAAACTG+GGG - chr7.3:84654670-84654689 MS.gene071212:intron 35.0%
TGTTTCTCGTGTTAGTATCA+AGG - chr7.3:84654766-84654785 MS.gene071212:intron 35.0%
TTCCAAGTTACTACAAGTGA+CGG - chr7.3:84654875-84654894 MS.gene071212:CDS 35.0%
TTTCTCGTGTTAGTATCAAG+GGG - chr7.3:84654768-84654787 MS.gene071212:intron 35.0%
! ATCTCTTCAAACAAGGGTAT+GGG - chr7.3:84654378-84654397 MS.gene071212:CDS 35.0%
! GGTGTTAGGTTTGAAATCAA+AGG - chr7.3:84654692-84654711 MS.gene071212:intron 35.0%
!! AAATCAAAGTGTTTTTGCGG+AGG + chr7.3:84654584-84654603 None:intergenic 35.0%
!! AATCAAAGTGTTTTTGCGGA+GGG + chr7.3:84654583-84654602 None:intergenic 35.0%
!! TGGAGGACAAAAATTTGTTG+CGG + chr7.3:84654528-84654547 None:intergenic 35.0%
!!! TGCTTTTTCGTAAGCAATAG+AGG + chr7.3:84654624-84654643 None:intergenic 35.0%
AGCATCATGAAAAAGGCCAA+AGG + chr7.3:84653899-84653918 None:intergenic 40.0%
AGTATCAAGGGGTCTAATAC+TGG - chr7.3:84654779-84654798 MS.gene071212:intron 40.0%
CGTGTTCCATGCATTAAAAC+TGG - chr7.3:84654668-84654687 MS.gene071212:intron 40.0%
GAACACGTCGATATTTAACG+GGG + chr7.3:84654655-84654674 None:intergenic 40.0%
GATCTCTTCAAACAAGGGTA+TGG - chr7.3:84654377-84654396 MS.gene071212:CDS 40.0%
GCTCCTTCAAATTGGCAATT+TGG - chr7.3:84654923-84654942 MS.gene071212:CDS 40.0%
GGAACACGTCGATATTTAAC+GGG + chr7.3:84654656-84654675 None:intergenic 40.0%
GTTCCATGCATTAAAACTGG+GGG - chr7.3:84654671-84654690 MS.gene071212:intron 40.0%
TGCCCAAATTGCCAATTTGA+AGG + chr7.3:84654929-84654948 None:intergenic 40.0%
TGGGGGCAAAATTGGAATAT+TGG - chr7.3:84654824-84654843 MS.gene071212:intron 40.0%
TTCATGATGCTCCTCGTAAA+GGG - chr7.3:84653908-84653927 MS.gene071212:CDS 40.0%
TTCCGTCACTTGTAGTAACT+TGG + chr7.3:84654880-84654899 None:intergenic 40.0%
TTGTTGCGGTTATCGTGATA+GGG + chr7.3:84654514-84654533 None:intergenic 40.0%
TTTCATGATGCTCCTCGTAA+AGG - chr7.3:84653907-84653926 MS.gene071212:CDS 40.0%
TTTGTTGCGGTTATCGTGAT+AGG + chr7.3:84654515-84654534 None:intergenic 40.0%
! CATGAGCATCGTACCAATTT+GGG + chr7.3:84653949-84653968 None:intergenic 40.0%
! GTCTAACACTTTGGTTCCTT+TGG - chr7.3:84653880-84653899 MS.gene071212:CDS 40.0%
!! TACGAGGAGCATCATGAAAA+AGG + chr7.3:84653906-84653925 None:intergenic 40.0%
ACAGCAAGACCACTGACATT+TGG - chr7.3:84654552-84654571 MS.gene071212:intron 45.0%
ACCACCCTATAACTTACGCA+TGG + chr7.3:84654005-84654024 None:intergenic 45.0%
ACCATGCGTAAGTTATAGGG+TGG - chr7.3:84654001-84654020 MS.gene071212:CDS 45.0%
ACGAGAAACATCTCCAGCAT+TGG + chr7.3:84654756-84654775 None:intergenic 45.0%
CAAGGGGTCTAATACTGGAT+GGG - chr7.3:84654784-84654803 MS.gene071212:intron 45.0%
CAATTTGGGCAGACCTTTGA+GGG - chr7.3:84654938-84654957 MS.gene071212:CDS 45.0%
CACCCTTTATGCACCATTGT+GGG + chr7.3:84654487-84654506 None:intergenic 45.0%
GACCCACAATGGTGCATAAA+GGG - chr7.3:84654482-84654501 MS.gene071212:intron 45.0%
GATGCTCATGCAACCTTCTA+CGG - chr7.3:84653959-84653978 MS.gene071212:CDS 45.0%
GGTTCCTATGTCACGCAATT+GGG - chr7.3:84654805-84654824 MS.gene071212:intron 45.0%
GTGTTCAATGTTGCCAATGC+TGG - chr7.3:84654740-84654759 MS.gene071212:intron 45.0%
GTTCCTATGTCACGCAATTG+GGG - chr7.3:84654806-84654825 MS.gene071212:intron 45.0%
TATTATGCAGAGGGAGCTTG+TGG - chr7.3:84654347-84654366 MS.gene071212:CDS 45.0%
TCAAGGGGTCTAATACTGGA+TGG - chr7.3:84654783-84654802 MS.gene071212:intron 45.0%
TTCCTATGTCACGCAATTGG+GGG - chr7.3:84654807-84654826 MS.gene071212:intron 45.0%
! GCATGAGCATCGTACCAATT+TGG + chr7.3:84653950-84653969 None:intergenic 45.0%
! TCAGTGGTCTTGCTGTAATC+TGG + chr7.3:84654548-84654567 None:intergenic 45.0%
!! ACACCCCCAGTTTTAATGCA+TGG + chr7.3:84654677-84654696 None:intergenic 45.0%
!! GCATTAAAACTGGGGGTGTT+AGG - chr7.3:84654678-84654697 MS.gene071212:intron 45.0%
!!! TGCATGGCTGCTACTTTTGT+TGG - chr7.3:84654199-84654218 MS.gene071212:CDS 45.0%
!!! CTTTTTATATAAATTATATA+TGG - chr7.3:84654322-84654341 MS.gene071212:CDS 5.0%
!!! TAAAAAAAAATCTTTTTTTT+TGG - chr7.3:84654246-84654265 MS.gene071212:CDS 5.0%
AACCTTCTACGGTGATGCAG+CGG - chr7.3:84653970-84653989 MS.gene071212:CDS 50.0%
AGGGTATGGGCTTGCAACTA+CGG - chr7.3:84654391-84654410 MS.gene071212:CDS 50.0%
AGGGTTGCACCAAATGTCAG+TGG + chr7.3:84654564-84654583 None:intergenic 50.0%
CACGCAATTGGGGGCAAAAT+TGG - chr7.3:84654816-84654835 MS.gene071212:intron 50.0%
CGACCCACAATGGTGCATAA+AGG - chr7.3:84654481-84654500 MS.gene071212:intron 50.0%
GCAATTTGGGCAGACCTTTG+AGG - chr7.3:84654937-84654956 MS.gene071212:CDS 50.0%
GCACCCTTTATGCACCATTG+TGG + chr7.3:84654488-84654507 None:intergenic 50.0%
GGGTTCCTATGTCACGCAAT+TGG - chr7.3:84654804-84654823 MS.gene071212:intron 50.0%
! GTGGTCTTGCTGTAATCTGG+AGG + chr7.3:84654545-84654564 None:intergenic 50.0%
!! TGGCTGGCATTGACCCAAAT+TGG - chr7.3:84653933-84653952 MS.gene071212:CDS 50.0%
ACCTTCTACGGTGATGCAGC+GGG - chr7.3:84653971-84653990 MS.gene071212:CDS 55.0%
GATGCTCCTCGTAAAGGGCA+TGG - chr7.3:84653913-84653932 MS.gene071212:CDS 55.0%
GCAGAGGGAGCTTGTGGTTA+TGG - chr7.3:84654353-84654372 MS.gene071212:CDS 55.0%
TGCCCCCAATTGCGTGACAT+AGG + chr7.3:84654812-84654831 None:intergenic 55.0%
! CTTGTGTCGACGACCCACAA+TGG - chr7.3:84654471-84654490 MS.gene071212:CDS 55.0%
ACCCGCTGCATCACCGTAGA+AGG + chr7.3:84653975-84653994 None:intergenic 60.0%
TGCCAGCCATGCCCTTTACG+AGG + chr7.3:84653922-84653941 None:intergenic 60.0%
TTCTACGGTGATGCAGCGGG+TGG - chr7.3:84653974-84653993 MS.gene071212:CDS 60.0%
! CTCCTCGTAAAGGGCATGGC+TGG - chr7.3:84653917-84653936 MS.gene071212:CDS 60.0%
! GGGCAGACCTTTGAGGGCAA+TGG - chr7.3:84654944-84654963 MS.gene071212:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 84653872 84654976 84653872 ID=MS.gene071212
chr7.3 mRNA 84653872 84654976 84653872 ID=MS.gene071212.t1;Parent=MS.gene071212
chr7.3 exon 84654841 84654976 84654841 ID=MS.gene071212.t1.exon1;Parent=MS.gene071212.t1
chr7.3 CDS 84654841 84654976 84654841 ID=cds.MS.gene071212.t1;Parent=MS.gene071212.t1
chr7.3 exon 84653872 84654491 84653872 ID=MS.gene071212.t1.exon2;Parent=MS.gene071212.t1
chr7.3 CDS 84653872 84654491 84653872 ID=cds.MS.gene071212.t1;Parent=MS.gene071212.t1
Gene Sequence

>MS.gene071212

ATGGCTATGTCTAACACTTTGGTTCCTTTGGCCTTTTTCATGATGCTCCTCGTAAAGGGCATGGCTGGCATTGACCCAAATTGGTACGATGCTCATGCAACCTTCTACGGTGATGCAGCGGGTGGTGAAACCATGCGTAAGTTATAGGGTGGTGAATTTTTTTTTTGAATATCAATTGTTAAATTAAGACAAGTTGTTGATAAAATTTAATAGTATATTTAAATTTAAATATACTATCAATTGTTAAAAAAAAAATTCATAGTATATTTATTAGTAAATACATGGTTGTCTAAATTTCATCTAAACTAAACATTGAGAACAATAGCATGCATGGCTGCTACTTTTGTTGGTAACATTGATCTCATGCACAATTATAAAAAAAAATCTTTTTTTTTGGAAAATCTTGTTTAATTGTTTGATATATTTTTTTGTTGAGGTTGTTTCATTATACTTTTTATATAAATTATATATGGTATATTATGCAGAGGGAGCTTGTGGTTATGGTGATCTCTTCAAACAAGGGTATGGGCTTGCAACTACGGCGTTAAGCACTGCTCTATTCAATAATGGATTTACTTGTGGTGCATGTTTTCAGATAACTTGTGTCGACGACCCACAATGGTGCATAAAGGGTGCAAGCCCTATCACGATAACCGCAACAAATTTTTGTCCTCCAGATTACAGCAAGACCACTGACATTTGGTGCAACCCTCCGCAAAAACACTTTGATTTGAGTTATAAAATGTTCACCTCTATTGCTTACGAAAAAGCAGGTATTGTCCCCGTTAAATATCGACGTGTTCCATGCATTAAAACTGGGGGTGTTAGGTTTGAAATCAAAGGAAACCCTAATTTTTTGCTTGTTTTGGTGTTCAATGTTGCCAATGCTGGAGATGTTTCTCGTGTTAGTATCAAGGGGTCTAATACTGGATGGGTTCCTATGTCACGCAATTGGGGGCAAAATTGGAATATTGGAACGAATTTGGTAGGACAAACCTTATCATTCCAAGTTACTACAAGTGACGGAAAAACTTTAGAGTTAGATTCAGTTGCTCCTTCAAATTGGCAATTTGGGCAGACCTTTGAGGGCAATGGAAATTTTTAG
Protein sequence

>MS.gene071212.t1

MAMSNTLVPLAFFMMLLVKGMAGIDPNWYDAHATFYGDAAGGETMQGACGYGDLFKQGYGLATTALSTALFNNGFTCGACFQITCVDDPQWCIKGASPITITATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYEKAGIVPVKYRRVPCIKTGGVRFEIKGNPNFLLVLVFNVANAGDVSRVSIKGSNTGWVPMSRNWGQNWNIGTNLVGQTLSFQVTTSDGKTLELDSVAPSNWQFGQTFEGNGNF