AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071579

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071579.t1 MTR_4g077300 99.770 434 1 0 1 434 1 434 0.0 905
MS.gene071579.t1 MTR_4g077300 99.770 434 1 0 1 434 6 439 0.0 905
MS.gene071579.t1 MTR_2g040010 80.907 419 76 1 20 434 4 422 0.0 722
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071579.t1 AT5G57020 79.032 434 91 0 1 434 1 434 0.0 738
MS.gene071579.t1 AT2G44175 42.391 92 48 1 28 119 10 96 2.51e-18 80.9

Find 110 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGACCAAAGACATAAATTT+TGG 0.100981 4.4:-33353231 MS.gene071579:CDS
GCTTTCAAAGTTGAGTAATT+TGG 0.173591 4.4:+33352320 None:intergenic
TCAGTGACCTCGTGAGTTTC+AGG 0.204412 4.4:+33352386 None:intergenic
TTTCCCAAAATTTATGTCTT+TGG 0.247451 4.4:+33353227 None:intergenic
ACCGACATCAATTAGTTTCT+TGG 0.257794 4.4:+33352646 None:intergenic
CTGCGGTTACAAGGCTAATT+AGG 0.267951 4.4:-33352514 MS.gene071579:CDS
CTTTCAAAGTTGAGTAATTT+GGG 0.299469 4.4:+33352321 None:intergenic
TCAGCAGGTGCATTTCCATC+TGG 0.302312 4.4:+33353307 None:intergenic
TATAAAGGCAACCATCTTCT+TGG 0.307468 4.4:+33352898 None:intergenic
TGAAGTAGCCCGGAGGTTGC+AGG 0.313936 4.4:+33352954 None:intergenic
CCGTGATGAGGTTGTTAATA+TGG 0.329122 4.4:-33352849 MS.gene071579:CDS
CCTCATCACGGACTCGAATT+CGG 0.339678 4.4:+33352861 None:intergenic
TTCTTGAAGGAACTGAAGTT+TGG 0.345695 4.4:-33352170 MS.gene071579:CDS
GCGCTGGGCCCTGCAACCTC+CGG 0.353029 4.4:-33352963 MS.gene071579:CDS
AAGATGGTTGCCTTTATAAC+AGG 0.354888 4.4:-33352893 MS.gene071579:CDS
CCTGGTGTGACTGTTGATTC+TGG 0.363701 4.4:+33352566 None:intergenic
GAATGTTGTCGATAGTTATC+TGG 0.365092 4.4:-33352417 MS.gene071579:CDS
ATTCTCCAAGTGCACCCTTC+TGG 0.370742 4.4:+33352751 None:intergenic
TGGAGCATTGGCTTCTTCCT+AGG 0.375688 4.4:-33352442 MS.gene071579:CDS
CTCATCACGGACTCGAATTC+GGG 0.375743 4.4:+33352862 None:intergenic
TACTTCACAGCTTGGCATAT+TGG 0.377050 4.4:-33352938 MS.gene071579:CDS
CAGCAGGTGCATTTCCATCT+GGG 0.382043 4.4:+33353308 None:intergenic
CCGACATCAATTAGTTTCTT+GGG 0.382092 4.4:+33352647 None:intergenic
GGGTGCACTTGGAGAATATA+TGG 0.383844 4.4:-33352745 MS.gene071579:CDS
AAGATGATGAGAACATGTTT+AGG 0.387407 4.4:-33353009 MS.gene071579:CDS
CAGTAGCAACTTGCCAATAC+TGG 0.390437 4.4:-33352685 MS.gene071579:CDS
GGTGCATTTCCATCTGGGTT+GGG 0.393200 4.4:+33353313 None:intergenic
GGCAGGGATACCTGTTATAA+AGG 0.401328 4.4:+33352883 None:intergenic
GTTTCTCTCGGCTCGGTGCT+CGG 0.405888 4.4:-33352625 MS.gene071579:CDS
GTTGGGCAGTTCAAGGATAT+AGG 0.408153 4.4:-33353196 MS.gene071579:CDS
CCCCTTATCTGAGGTAAAAC+AGG 0.409550 4.4:-33353134 MS.gene071579:CDS
CGCTGGGCCCTGCAACCTCC+GGG 0.413953 4.4:-33352962 MS.gene071579:CDS
GCAAAATGAAAGCTTCTTGA+AGG 0.425222 4.4:-33352183 MS.gene071579:CDS
TGTTAAAACTTCCAAGAAGA+TGG 0.425379 4.4:-33352909 MS.gene071579:CDS
ACCTTCCTAACCTCTATGAA+TGG 0.426427 4.4:-33353102 MS.gene071579:CDS
ATATCCTTGAACTGCCCAAC+AGG 0.427798 4.4:+33353199 None:intergenic
TTGGGCAGTTCAAGGATATA+GGG 0.438419 4.4:-33353195 MS.gene071579:CDS
ATCTCTACAACTACCGAGTA+AGG 0.445048 4.4:-33352121 MS.gene071579:CDS
ACACTTCCTTCTAGTATCCT+TGG 0.449112 4.4:-33352347 MS.gene071579:CDS
CAACATAATTATTAGCAAGA+AGG 0.456558 4.4:+33353032 None:intergenic
GGTGGTTCGATAGGACCTTC+AGG 0.457527 4.4:+33353160 None:intergenic
TAGAGGTTAGGAAGGTTGTA+TGG 0.462978 4.4:+33353109 None:intergenic
CATTGAAGTCATCAGAGCTT+GGG 0.467422 4.4:-33352094 MS.gene071579:CDS
GTTGATAGCAATCCTTCCTC+TGG 0.471116 4.4:-33353358 MS.gene071579:CDS
GGGTTGCCAAGGATACTAGA+AGG 0.472607 4.4:+33352341 None:intergenic
TCAACCTGTTGGGCAGTTCA+AGG 0.473546 4.4:-33353203 MS.gene071579:CDS
TTCGAAGGAATTTCTGCGCT+GGG 0.475576 4.4:-33352978 MS.gene071579:CDS
AACATAATTATTAGCAAGAA+GGG 0.476139 4.4:+33353033 None:intergenic
CACACCAGGGTTTAGAAAGA+TGG 0.478975 4.4:-33352552 MS.gene071579:CDS
AGGTGCATTTCCATCTGGGT+TGG 0.483616 4.4:+33353312 None:intergenic
TTTGGGAAACTCAACCTGTT+GGG 0.485400 4.4:-33353213 MS.gene071579:CDS
CAGTATTGGCAAGTTGCTAC+TGG 0.490516 4.4:+33352686 None:intergenic
TCAAAGATCTGTGCCAGTAT+TGG 0.491976 4.4:+33352672 None:intergenic
GTCACCTCTTTGATCATGAC+AGG 0.495174 4.4:+33352773 None:intergenic
GTAACCCATTCATAGAGGTT+AGG 0.503092 4.4:+33353097 None:intergenic
CATTCATCAGCTGAAGCAAA+GGG 0.503326 4.4:+33352264 None:intergenic
GGTGACCAGAAGGGTGCACT+TGG 0.504257 4.4:-33352756 MS.gene071579:CDS
TTGAGTAATTTGGGTTGCCA+AGG 0.505565 4.4:+33352330 None:intergenic
ATGATGTTCCTGCGGTTACA+AGG 0.508314 4.4:-33352523 MS.gene071579:CDS
CCTTCCTAACCTCTATGAAT+GGG 0.513056 4.4:-33353101 MS.gene071579:CDS
GGAGCATTGGCTTCTTCCTA+GGG 0.513324 4.4:-33352441 MS.gene071579:CDS
GCATTGAAGTCATCAGAGCT+TGG 0.516250 4.4:-33352095 MS.gene071579:CDS
ATTCGAAGGAATTTCTGCGC+TGG 0.519044 4.4:-33352979 MS.gene071579:CDS
CTCCGGGCTACTTCACAGCT+TGG 0.520105 4.4:-33352946 MS.gene071579:CDS
TCACGGACTCGAATTCGGGC+AGG 0.527541 4.4:+33352866 None:intergenic
CCCATTCATAGAGGTTAGGA+AGG 0.528278 4.4:+33353101 None:intergenic
TGCTGAAAGTGATCTTGCAT+TGG 0.528701 4.4:-33353290 MS.gene071579:CDS
ACGAAAATGATGTGGAGCAT+TGG 0.530628 4.4:-33352454 MS.gene071579:CDS
TGGCAAGTTGCTACTGGTGT+AGG 0.531802 4.4:+33352692 None:intergenic
CATGACAGGAGCAAGCCTCT+TGG 0.536419 4.4:+33352787 None:intergenic
TAATTGATGTCGGTTTCTCT+CGG 0.541266 4.4:-33352637 MS.gene071579:CDS
ACTTCAATGCATGCCTTACT+CGG 0.542030 4.4:+33352108 None:intergenic
GAAGTAGCCCGGAGGTTGCA+GGG 0.543684 4.4:+33352955 None:intergenic
TCATTCATCAGCTGAAGCAA+AGG 0.547013 4.4:+33352263 None:intergenic
ATTTCCATCTTTCTAAACCC+TGG 0.548222 4.4:+33352548 None:intergenic
CACGGACTCGAATTCGGGCA+GGG 0.550332 4.4:+33352867 None:intergenic
AAGAATCACTCCTGCTGTGT+AGG 0.552278 4.4:+33352715 None:intergenic
GATGTCGGTTTCTCTCGGCT+CGG 0.552576 4.4:-33352632 MS.gene071579:CDS
TGCCAAGCTGTGAAGTAGCC+CGG 0.554188 4.4:+33352944 None:intergenic
CTAATTAGCCTTGTAACCGC+AGG 0.559185 4.4:+33352515 None:intergenic
CCAGAATCAACAGTCACACC+AGG 0.560206 4.4:-33352566 MS.gene071579:CDS
TTGTAACCGCAGGAACATCA+TGG 0.561294 4.4:+33352525 None:intergenic
CCCAAGAAACTAATTGATGT+CGG 0.561835 4.4:-33352647 MS.gene071579:CDS
ATAGGACCTTCAGGCAAAGT+GGG 0.564234 4.4:+33353169 None:intergenic
TGGCAGGCTGCCTACACAGC+AGG 0.566798 4.4:-33352725 MS.gene071579:CDS
CTATCGACAACATTCTCCCT+AGG 0.573804 4.4:+33352425 None:intergenic
TGATCAAAGAGGTGACCAGA+AGG 0.575360 4.4:-33352766 MS.gene071579:CDS
AATGCAAGATCACTTTCAGC+AGG 0.575390 4.4:+33353292 None:intergenic
CACAAGTAACCCATTCATAG+AGG 0.576099 4.4:+33353092 None:intergenic
ACTCAAAATCCCAACCCAGA+TGG 0.582100 4.4:-33353322 MS.gene071579:CDS
CTGAAGTTTGGACCAGGTGA+TGG 0.583002 4.4:-33352158 MS.gene071579:CDS
GTTTAGGTTTAACTATTCGA+AGG 0.584434 4.4:-33352993 MS.gene071579:CDS
GATAGGACCTTCAGGCAAAG+TGG 0.591235 4.4:+33353168 None:intergenic
GCACTTGGAGAATATATGGC+AGG 0.591925 4.4:-33352741 MS.gene071579:CDS
GGGAACCCCACTTTGCCTGA+AGG 0.595352 4.4:-33353175 MS.gene071579:CDS
AAGGAACTGAAGTTTGGACC+AGG 0.609351 4.4:-33352164 MS.gene071579:CDS
TCTTCAGGTGATCCAGAGGA+AGG 0.613470 4.4:+33353346 None:intergenic
TAATGAAGTTTACCATCACC+TGG 0.622265 4.4:+33352146 None:intergenic
CCATATTAACAACCTCATCA+CGG 0.625479 4.4:+33352849 None:intergenic
ACAAGAAGCTTCGAACCAAG+AGG 0.628890 4.4:-33352802 MS.gene071579:CDS
GATCAAAGAGGTGACCAGAA+GGG 0.633175 4.4:-33352765 MS.gene071579:CDS
CCGAATTCGAGTCCGTGATG+AGG 0.640464 4.4:-33352861 MS.gene071579:CDS
AGTCTCTTCAGGTGATCCAG+AGG 0.644950 4.4:+33353342 None:intergenic
TGCTCCTGTCATGATCAAAG+AGG 0.676350 4.4:-33352777 MS.gene071579:CDS
GGAAATCCATGATGTTCCTG+CGG 0.677320 4.4:-33352531 MS.gene071579:CDS
TAGGACCTTCAGGCAAAGTG+GGG 0.681811 4.4:+33353170 None:intergenic
CAGAATCAACAGTCACACCA+GGG 0.712272 4.4:-33352565 MS.gene071579:CDS
ATTCATCAGCTGAAGCAAAG+GGG 0.718075 4.4:+33352265 None:intergenic
TGAAAGTCCTGAAACTCACG+AGG 0.726533 4.4:-33352393 MS.gene071579:CDS
CAAGCTGTGAAGTAGCCCGG+AGG 0.761817 4.4:+33352947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAATTATTAGCAAGAA+GGG + chr4.4:33352410-33352429 None:intergenic 20.0%
! CAACATAATTATTAGCAAGA+AGG + chr4.4:33352411-33352430 None:intergenic 25.0%
! CTTTCAAAGTTGAGTAATTT+GGG + chr4.4:33353122-33353141 None:intergenic 25.0%
! TTTCCCAAAATTTATGTCTT+TGG + chr4.4:33352216-33352235 None:intergenic 25.0%
AAGATGATGAGAACATGTTT+AGG - chr4.4:33352431-33352450 MS.gene071579:CDS 30.0%
GCTTTCAAAGTTGAGTAATT+TGG + chr4.4:33353123-33353142 None:intergenic 30.0%
TGTTAAAACTTCCAAGAAGA+TGG - chr4.4:33352531-33352550 MS.gene071579:CDS 30.0%
! ACATCATTTTCGTCAAAATC+AGG + chr4.4:33352979-33352998 None:intergenic 30.0%
! CGACCAAAGACATAAATTTT+GGG - chr4.4:33352210-33352229 MS.gene071579:CDS 30.0%
! GTTTAGGTTTAACTATTCGA+AGG - chr4.4:33352447-33352466 MS.gene071579:CDS 30.0%
! TCGACCAAAGACATAAATTT+TGG - chr4.4:33352209-33352228 MS.gene071579:CDS 30.0%
! TTATGATGTTTTCAACGCTT+TGG - chr4.4:33353227-33353246 MS.gene071579:CDS 30.0%
!! TGATTTTGACGAAAATGATG+TGG - chr4.4:33352978-33352997 MS.gene071579:CDS 30.0%
AAGATGGTTGCCTTTATAAC+AGG - chr4.4:33352547-33352566 MS.gene071579:CDS 35.0%
ATTTCCATCTTTCTAAACCC+TGG + chr4.4:33352895-33352914 None:intergenic 35.0%
CCATATTAACAACCTCATCA+CGG + chr4.4:33352594-33352613 None:intergenic 35.0%
CCCAAGAAACTAATTGATGT+CGG - chr4.4:33352793-33352812 MS.gene071579:CDS 35.0%
GAATGTTGTCGATAGTTATC+TGG - chr4.4:33353023-33353042 MS.gene071579:CDS 35.0%
GCAAAATGAAAGCTTCTTGA+AGG - chr4.4:33353257-33353276 MS.gene071579:CDS 35.0%
TAATGAAGTTTACCATCACC+TGG + chr4.4:33353297-33353316 None:intergenic 35.0%
TATAAAGGCAACCATCTTCT+TGG + chr4.4:33352545-33352564 None:intergenic 35.0%
TTCTTGAAGGAACTGAAGTT+TGG - chr4.4:33353270-33353289 MS.gene071579:CDS 35.0%
! ACCGACATCAATTAGTTTCT+TGG + chr4.4:33352797-33352816 None:intergenic 35.0%
! CCGACATCAATTAGTTTCTT+GGG + chr4.4:33352796-33352815 None:intergenic 35.0%
! TCCTGTTTTACCTCAGATAA+GGG + chr4.4:33352310-33352329 None:intergenic 35.0%
! TTCCTGTTTTACCTCAGATA+AGG + chr4.4:33352311-33352330 None:intergenic 35.0%
!! TAATTGATGTCGGTTTCTCT+CGG - chr4.4:33352803-33352822 MS.gene071579:CDS 35.0%
AATGCAAGATCACTTTCAGC+AGG + chr4.4:33352151-33352170 None:intergenic 40.0%
ACACTTCCTTCTAGTATCCT+TGG - chr4.4:33353093-33353112 MS.gene071579:CDS 40.0%
ACCTTCCTAACCTCTATGAA+TGG - chr4.4:33352338-33352357 MS.gene071579:CDS 40.0%
ACGAAAATGATGTGGAGCAT+TGG - chr4.4:33352986-33353005 MS.gene071579:CDS 40.0%
ACTTCAATGCATGCCTTACT+CGG + chr4.4:33353335-33353354 None:intergenic 40.0%
ATCTCTACAACTACCGAGTA+AGG - chr4.4:33353319-33353338 MS.gene071579:CDS 40.0%
ATTCATCAGCTGAAGCAAAG+GGG + chr4.4:33353178-33353197 None:intergenic 40.0%
CACAAGTAACCCATTCATAG+AGG + chr4.4:33352351-33352370 None:intergenic 40.0%
CATTCATCAGCTGAAGCAAA+GGG + chr4.4:33353179-33353198 None:intergenic 40.0%
CATTGAAGTCATCAGAGCTT+GGG - chr4.4:33353346-33353365 MS.gene071579:CDS 40.0%
CCGTGATGAGGTTGTTAATA+TGG - chr4.4:33352591-33352610 MS.gene071579:CDS 40.0%
CCTTCCTAACCTCTATGAAT+GGG - chr4.4:33352339-33352358 MS.gene071579:CDS 40.0%
GTAACCCATTCATAGAGGTT+AGG + chr4.4:33352346-33352365 None:intergenic 40.0%
TACTTCACAGCTTGGCATAT+TGG - chr4.4:33352502-33352521 MS.gene071579:CDS 40.0%
TAGAGGTTAGGAAGGTTGTA+TGG + chr4.4:33352334-33352353 None:intergenic 40.0%
TCAAAGATCTGTGCCAGTAT+TGG + chr4.4:33352771-33352790 None:intergenic 40.0%
TCATTCATCAGCTGAAGCAA+AGG + chr4.4:33353180-33353199 None:intergenic 40.0%
TGCTGAAAGTGATCTTGCAT+TGG - chr4.4:33352150-33352169 MS.gene071579:CDS 40.0%
TTGGGCAGTTCAAGGATATA+GGG - chr4.4:33352245-33352264 MS.gene071579:CDS 40.0%
TTTGGGAAACTCAACCTGTT+GGG - chr4.4:33352227-33352246 MS.gene071579:CDS 40.0%
! CCTGTTTTACCTCAGATAAG+GGG + chr4.4:33352309-33352328 None:intergenic 40.0%
! CTGTTTTACCTCAGATAAGG+GGG + chr4.4:33352308-33352327 None:intergenic 40.0%
!! TTGAGTAATTTGGGTTGCCA+AGG + chr4.4:33353113-33353132 None:intergenic 40.0%
!! TTGGGATTTTGAGTCTCTTC+AGG + chr4.4:33352112-33352131 None:intergenic 40.0%
!! TTTTGGGAAACTCAACCTGT+TGG - chr4.4:33352226-33352245 MS.gene071579:CDS 40.0%
AAGAATCACTCCTGCTGTGT+AGG + chr4.4:33352728-33352747 None:intergenic 45.0%
AAGGAACTGAAGTTTGGACC+AGG - chr4.4:33353276-33353295 MS.gene071579:CDS 45.0%
ACAAGAAGCTTCGAACCAAG+AGG - chr4.4:33352638-33352657 MS.gene071579:CDS 45.0%
ACTCAAAATCCCAACCCAGA+TGG - chr4.4:33352118-33352137 MS.gene071579:CDS 45.0%
ATAGGACCTTCAGGCAAAGT+GGG + chr4.4:33352274-33352293 None:intergenic 45.0%
ATATCCTTGAACTGCCCAAC+AGG + chr4.4:33352244-33352263 None:intergenic 45.0%
ATGATGTTCCTGCGGTTACA+AGG - chr4.4:33352917-33352936 MS.gene071579:CDS 45.0%
ATTCGAAGGAATTTCTGCGC+TGG - chr4.4:33352461-33352480 MS.gene071579:CDS 45.0%
CACACCAGGGTTTAGAAAGA+TGG - chr4.4:33352888-33352907 MS.gene071579:CDS 45.0%
CAGAATCAACAGTCACACCA+GGG - chr4.4:33352875-33352894 MS.gene071579:CDS 45.0%
CAGTAGCAACTTGCCAATAC+TGG - chr4.4:33352755-33352774 MS.gene071579:CDS 45.0%
CCCATTCATAGAGGTTAGGA+AGG + chr4.4:33352342-33352361 None:intergenic 45.0%
CTATCGACAACATTCTCCCT+AGG + chr4.4:33353018-33353037 None:intergenic 45.0%
CTGCGGTTACAAGGCTAATT+AGG - chr4.4:33352926-33352945 MS.gene071579:CDS 45.0%
GATCAAAGAGGTGACCAGAA+GGG - chr4.4:33352675-33352694 MS.gene071579:CDS 45.0%
GCACTTGGAGAATATATGGC+AGG - chr4.4:33352699-33352718 MS.gene071579:CDS 45.0%
GCATTGAAGTCATCAGAGCT+TGG - chr4.4:33353345-33353364 MS.gene071579:CDS 45.0%
GGAAATCCATGATGTTCCTG+CGG - chr4.4:33352909-33352928 MS.gene071579:CDS 45.0%
GGCAGGGATACCTGTTATAA+AGG + chr4.4:33352560-33352579 None:intergenic 45.0%
GGGTGCACTTGGAGAATATA+TGG - chr4.4:33352695-33352714 MS.gene071579:CDS 45.0%
GTCACCTCTTTGATCATGAC+AGG + chr4.4:33352670-33352689 None:intergenic 45.0%
GTTGGGCAGTTCAAGGATAT+AGG - chr4.4:33352244-33352263 MS.gene071579:CDS 45.0%
TGAAAGTCCTGAAACTCACG+AGG - chr4.4:33353047-33353066 MS.gene071579:CDS 45.0%
TGATCAAAGAGGTGACCAGA+AGG - chr4.4:33352674-33352693 MS.gene071579:CDS 45.0%
TGCTCCTGTCATGATCAAAG+AGG - chr4.4:33352663-33352682 MS.gene071579:CDS 45.0%
TTCGAAGGAATTTCTGCGCT+GGG - chr4.4:33352462-33352481 MS.gene071579:CDS 45.0%
TTGTAACCGCAGGAACATCA+TGG + chr4.4:33352918-33352937 None:intergenic 45.0%
TTTACCTCAGATAAGGGGGT+TGG + chr4.4:33352304-33352323 None:intergenic 45.0%
! CCCCTTATCTGAGGTAAAAC+AGG - chr4.4:33352306-33352325 MS.gene071579:CDS 45.0%
!! CAGTATTGGCAAGTTGCTAC+TGG + chr4.4:33352757-33352776 None:intergenic 45.0%
!! CTAATTAGCCTTGTAACCGC+AGG + chr4.4:33352928-33352947 None:intergenic 45.0%
!! GTTGATAGCAATCCTTCCTC+TGG - chr4.4:33352082-33352101 MS.gene071579:CDS 45.0%
AGGTGCATTTCCATCTGGGT+TGG + chr4.4:33352131-33352150 None:intergenic 50.0%
AGTCTCTTCAGGTGATCCAG+AGG + chr4.4:33352101-33352120 None:intergenic 50.0%
ATTCTCCAAGTGCACCCTTC+TGG + chr4.4:33352692-33352711 None:intergenic 50.0%
CAGCAGGTGCATTTCCATCT+GGG + chr4.4:33352135-33352154 None:intergenic 50.0%
CCAGAATCAACAGTCACACC+AGG - chr4.4:33352874-33352893 MS.gene071579:CDS 50.0%
CCTCATCACGGACTCGAATT+CGG + chr4.4:33352582-33352601 None:intergenic 50.0%
CTCATCACGGACTCGAATTC+GGG + chr4.4:33352581-33352600 None:intergenic 50.0%
CTGAAGTTTGGACCAGGTGA+TGG - chr4.4:33353282-33353301 MS.gene071579:CDS 50.0%
GATAGGACCTTCAGGCAAAG+TGG + chr4.4:33352275-33352294 None:intergenic 50.0%
GGGTTGCCAAGGATACTAGA+AGG + chr4.4:33353102-33353121 None:intergenic 50.0%
GGTGCATTTCCATCTGGGTT+GGG + chr4.4:33352130-33352149 None:intergenic 50.0%
TAGGACCTTCAGGCAAAGTG+GGG + chr4.4:33352273-33352292 None:intergenic 50.0%
TCAACCTGTTGGGCAGTTCA+AGG - chr4.4:33352237-33352256 MS.gene071579:CDS 50.0%
TCAGCAGGTGCATTTCCATC+TGG + chr4.4:33352136-33352155 None:intergenic 50.0%
TCAGTGACCTCGTGAGTTTC+AGG + chr4.4:33353057-33353076 None:intergenic 50.0%
TCTTCAGGTGATCCAGAGGA+AGG + chr4.4:33352097-33352116 None:intergenic 50.0%
TGGCAAGTTGCTACTGGTGT+AGG + chr4.4:33352751-33352770 None:intergenic 50.0%
!! CCTGGTGTGACTGTTGATTC+TGG + chr4.4:33352877-33352896 None:intergenic 50.0%
!! GGAGCATTGGCTTCTTCCTA+GGG - chr4.4:33352999-33353018 MS.gene071579:CDS 50.0%
!! TGGAGCATTGGCTTCTTCCT+AGG - chr4.4:33352998-33353017 MS.gene071579:CDS 50.0%
ACCACCAACCCCCTTATCTG+AGG - chr4.4:33352297-33352316 MS.gene071579:CDS 55.0%
ACCTCAGATAAGGGGGTTGG+TGG + chr4.4:33352301-33352320 None:intergenic 55.0%
CATGACAGGAGCAAGCCTCT+TGG + chr4.4:33352656-33352675 None:intergenic 55.0%
CCGAATTCGAGTCCGTGATG+AGG - chr4.4:33352579-33352598 MS.gene071579:CDS 55.0%
GGTGGTTCGATAGGACCTTC+AGG + chr4.4:33352283-33352302 None:intergenic 55.0%
TGCCAAGCTGTGAAGTAGCC+CGG + chr4.4:33352499-33352518 None:intergenic 55.0%
!! AAGGGGGTTGGTGGTTCGAT+AGG + chr4.4:33352292-33352311 None:intergenic 55.0%
!! GATGTCGGTTTCTCTCGGCT+CGG - chr4.4:33352808-33352827 MS.gene071579:CDS 55.0%
CAAGCTGTGAAGTAGCCCGG+AGG + chr4.4:33352496-33352515 None:intergenic 60.0%
CACGGACTCGAATTCGGGCA+GGG + chr4.4:33352576-33352595 None:intergenic 60.0%
CTCCGGGCTACTTCACAGCT+TGG - chr4.4:33352494-33352513 MS.gene071579:CDS 60.0%
GAAGTAGCCCGGAGGTTGCA+GGG + chr4.4:33352488-33352507 None:intergenic 60.0%
GGGAACCCCACTTTGCCTGA+AGG - chr4.4:33352265-33352284 MS.gene071579:CDS 60.0%
TCACGGACTCGAATTCGGGC+AGG + chr4.4:33352577-33352596 None:intergenic 60.0%
TGAAGTAGCCCGGAGGTTGC+AGG + chr4.4:33352489-33352508 None:intergenic 60.0%
! GGTGACCAGAAGGGTGCACT+TGG - chr4.4:33352684-33352703 MS.gene071579:CDS 60.0%
!! GTTTCTCTCGGCTCGGTGCT+CGG - chr4.4:33352815-33352834 MS.gene071579:CDS 60.0%
TGGCAGGCTGCCTACACAGC+AGG - chr4.4:33352715-33352734 MS.gene071579:CDS 65.0%
CGCTGGGCCCTGCAACCTCC+GGG - chr4.4:33352478-33352497 MS.gene071579:CDS 75.0%
GCGCTGGGCCCTGCAACCTC+CGG - chr4.4:33352477-33352496 MS.gene071579:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 33352079 33353383 33352079 ID=MS.gene071579
chr4.4 mRNA 33352079 33353383 33352079 ID=MS.gene071579.t1;Parent=MS.gene071579
chr4.4 exon 33352079 33353383 33352079 ID=MS.gene071579.t1.exon1;Parent=MS.gene071579.t1
chr4.4 CDS 33352079 33353383 33352079 ID=cds.MS.gene071579.t1;Parent=MS.gene071579.t1
Gene Sequence

>MS.gene071579

ATGGTTGATAGCAATCCTTCCTCTGGATCACCTGAAGAGACTCAAAATCCCAACCCAGATGGAAATGCACCTGCTGAAAGTGATCTTGCATTGGATAATCTAGCACAAAAAGTTCAAGAATCTCTATCTATCGACCAAAGACATAAATTTTGGGAAACTCAACCTGTTGGGCAGTTCAAGGATATAGGGAACCCCACTTTGCCTGAAGGTCCTATCGAACCACCAACCCCCTTATCTGAGGTAAAACAGGAACCATACAACCTTCCTAACCTCTATGAATGGGTTACTTGTGACATTCATGACGAGCAGATGTGTGATGAGATATATACCCTTCTTGCTAATAATTATGTTGAAGATGATGAGAACATGTTTAGGTTTAACTATTCGAAGGAATTTCTGCGCTGGGCCCTGCAACCTCCGGGCTACTTCACAGCTTGGCATATTGGTGTTCGTGTTAAAACTTCCAAGAAGATGGTTGCCTTTATAACAGGTATCCCTGCCCGAATTCGAGTCCGTGATGAGGTTGTTAATATGGCAGAAATTAACTTTTTGTGTGTTCACAAGAAGCTTCGAACCAAGAGGCTTGCTCCTGTCATGATCAAAGAGGTGACCAGAAGGGTGCACTTGGAGAATATATGGCAGGCTGCCTACACAGCAGGAGTGATTCTTCCTACACCAGTAGCAACTTGCCAATACTGGCACAGATCTTTGAATCCCAAGAAACTAATTGATGTCGGTTTCTCTCGGCTCGGTGCTCGGATGACAATGAGTAGAACTATCAAACTTTACAAGCTACCAGAATCAACAGTCACACCAGGGTTTAGAAAGATGGAAATCCATGATGTTCCTGCGGTTACAAGGCTAATTAGGAATTATTTGAGTCAATTTATTGTTGCGCCTGATTTTGACGAAAATGATGTGGAGCATTGGCTTCTTCCTAGGGAGAATGTTGTCGATAGTTATCTGGTTGAAAGTCCTGAAACTCACGAGGTCACTGACTTTTGTAGTTTTTACACACTTCCTTCTAGTATCCTTGGCAACCCAAATTACTCAACTTTGAAAGCAGCATACTCATTTTACAATGTTTCAACAGCTACCCCTTTGCTTCAGCTGATGAATGATGCTCTCATTGTAGCGAAACAGAAAGATTATGATGTTTTCAACGCTTTGGACGTCATGCAAAATGAAAGCTTCTTGAAGGAACTGAAGTTTGGACCAGGTGATGGTAAACTTCATTATTATCTCTACAACTACCGAGTAAGGCATGCATTGAAGTCATCAGAGCTTGGGCTTGTGCTTCTGTAG
Protein sequence

>MS.gene071579.t1

MVDSNPSSGSPEETQNPNPDGNAPAESDLALDNLAQKVQESLSIDQRHKFWETQPVGQFKDIGNPTLPEGPIEPPTPLSEVKQEPYNLPNLYEWVTCDIHDEQMCDEIYTLLANNYVEDDENMFRFNYSKEFLRWALQPPGYFTAWHIGVRVKTSKKMVAFITGIPARIRVRDEVVNMAEINFLCVHKKLRTKRLAPVMIKEVTRRVHLENIWQAAYTAGVILPTPVATCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPESTVTPGFRKMEIHDVPAVTRLIRNYLSQFIVAPDFDENDVEHWLLPRENVVDSYLVESPETHEVTDFCSFYTLPSSILGNPNYSTLKAAYSFYNVSTATPLLQLMNDALIVAKQKDYDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRVRHALKSSELGLVLL