Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071628.t1 | XP_013469132.1 | 88.3 | 401 | 22 | 5 | 1 | 385 | 1 | 392 | 4.00E-198 | 700.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071628.t1 | F4I839 | 59.6 | 408 | 139 | 4 | 2 | 385 | 27 | 432 | 4.7e-139 | 495.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071628.t1 | A0A072VYL4 | 88.3 | 401 | 22 | 5 | 1 | 385 | 1 | 392 | 2.9e-198 | 700.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052133 | MS.gene071628 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene052732 | MS.gene071628 | 0.815005 | 1.15E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene071628 | 0.805459 | 1.32E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene071628 | 0.802156 | 6.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071628.t1 | MTR_1g085620 | 89.062 | 384 | 21 | 4 | 18 | 385 | 14 | 392 | 0.0 | 688 |
| MS.gene071628.t1 | MTR_7g110900 | 67.327 | 404 | 110 | 4 | 2 | 385 | 3 | 404 | 0.0 | 563 |
| MS.gene071628.t1 | MTR_7g110900 | 67.327 | 404 | 110 | 4 | 2 | 385 | 3 | 404 | 0.0 | 560 |
| MS.gene071628.t1 | MTR_1g085620 | 87.108 | 287 | 21 | 2 | 115 | 385 | 1 | 287 | 0.0 | 505 |
| MS.gene071628.t1 | MTR_7g111280 | 65.730 | 356 | 106 | 2 | 46 | 385 | 53 | 408 | 4.84e-178 | 502 |
| MS.gene071628.t1 | MTR_4g124320 | 58.435 | 409 | 139 | 6 | 1 | 385 | 9 | 410 | 3.67e-170 | 482 |
| MS.gene071628.t1 | MTR_1g085070 | 59.631 | 379 | 119 | 5 | 26 | 385 | 28 | 391 | 8.46e-165 | 468 |
| MS.gene071628.t1 | MTR_4g124320 | 59.211 | 304 | 103 | 5 | 1 | 290 | 9 | 305 | 1.01e-128 | 374 |
| MS.gene071628.t1 | MTR_7g060760 | 47.558 | 389 | 177 | 5 | 15 | 385 | 28 | 407 | 5.04e-128 | 375 |
| MS.gene071628.t1 | MTR_8g072010 | 46.797 | 359 | 173 | 3 | 45 | 385 | 23 | 381 | 1.03e-124 | 366 |
| MS.gene071628.t1 | MTR_1g101000 | 50.279 | 358 | 157 | 4 | 49 | 385 | 39 | 396 | 1.99e-123 | 363 |
| MS.gene071628.t1 | MTR_1g101020 | 50.279 | 358 | 157 | 4 | 49 | 385 | 39 | 396 | 2.79e-123 | 363 |
| MS.gene071628.t1 | MTR_8g072000 | 46.197 | 355 | 173 | 4 | 49 | 385 | 28 | 382 | 3.13e-123 | 362 |
| MS.gene071628.t1 | MTR_1g101000 | 49.062 | 373 | 162 | 5 | 49 | 393 | 39 | 411 | 3.64e-123 | 363 |
| MS.gene071628.t1 | MTR_8g072000 | 46.197 | 355 | 173 | 4 | 49 | 385 | 59 | 413 | 1.57e-122 | 361 |
| MS.gene071628.t1 | MTR_5g042650 | 46.348 | 356 | 169 | 5 | 48 | 385 | 28 | 379 | 2.58e-115 | 342 |
| MS.gene071628.t1 | MTR_1g101000 | 49.560 | 341 | 150 | 5 | 49 | 367 | 39 | 379 | 7.90e-115 | 340 |
| MS.gene071628.t1 | MTR_7g006750 | 31.373 | 153 | 80 | 4 | 139 | 275 | 417 | 560 | 2.67e-16 | 81.3 |
| MS.gene071628.t1 | MTR_1g036590 | 40.244 | 82 | 43 | 1 | 229 | 304 | 270 | 351 | 8.73e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071628.t1 | AT1G57590 | 59.559 | 408 | 139 | 4 | 2 | 385 | 27 | 432 | 7.05e-178 | 503 |
| MS.gene071628.t1 | AT3G62060 | 58.738 | 412 | 137 | 7 | 3 | 385 | 1 | 408 | 3.03e-172 | 488 |
| MS.gene071628.t1 | AT3G62060 | 58.738 | 412 | 137 | 7 | 3 | 385 | 1 | 408 | 7.23e-172 | 488 |
| MS.gene071628.t1 | AT3G05910 | 63.333 | 360 | 115 | 3 | 42 | 385 | 46 | 404 | 9.45e-172 | 486 |
| MS.gene071628.t1 | AT5G26670 | 58.477 | 407 | 136 | 4 | 7 | 385 | 4 | 405 | 1.95e-171 | 485 |
| MS.gene071628.t1 | AT2G46930 | 58.374 | 406 | 145 | 5 | 3 | 385 | 1 | 405 | 4.22e-168 | 477 |
| MS.gene071628.t1 | AT4G19420 | 52.941 | 357 | 148 | 4 | 48 | 385 | 24 | 379 | 2.07e-138 | 400 |
| MS.gene071628.t1 | AT4G19420 | 52.941 | 357 | 148 | 4 | 48 | 385 | 24 | 379 | 2.07e-138 | 400 |
| MS.gene071628.t1 | AT1G09550 | 51.944 | 360 | 152 | 5 | 31 | 374 | 28 | 382 | 2.97e-135 | 392 |
| MS.gene071628.t1 | AT5G23870 | 52.161 | 347 | 145 | 4 | 49 | 374 | 35 | 381 | 1.53e-131 | 384 |
| MS.gene071628.t1 | AT5G23870 | 52.161 | 347 | 145 | 4 | 49 | 374 | 35 | 381 | 1.53e-131 | 384 |
| MS.gene071628.t1 | AT4G19420 | 48.214 | 392 | 148 | 5 | 48 | 385 | 24 | 414 | 1.80e-131 | 384 |
| MS.gene071628.t1 | AT5G23870 | 52.161 | 347 | 145 | 4 | 49 | 374 | 35 | 381 | 2.60e-131 | 384 |
| MS.gene071628.t1 | AT5G23870 | 52.161 | 347 | 145 | 4 | 49 | 374 | 35 | 381 | 3.60e-131 | 384 |
| MS.gene071628.t1 | AT3G09410 | 46.923 | 390 | 184 | 4 | 15 | 385 | 31 | 416 | 2.36e-128 | 376 |
| MS.gene071628.t1 | AT3G05910 | 65.900 | 261 | 82 | 2 | 43 | 297 | 47 | 306 | 3.15e-127 | 369 |
| MS.gene071628.t1 | AT5G26670 | 59.233 | 287 | 101 | 2 | 115 | 385 | 1 | 287 | 1.34e-125 | 364 |
| MS.gene071628.t1 | AT5G26670 | 59.233 | 287 | 101 | 2 | 115 | 385 | 1 | 287 | 1.34e-125 | 364 |
| MS.gene071628.t1 | AT5G26670 | 59.233 | 287 | 101 | 2 | 115 | 385 | 1 | 287 | 1.34e-125 | 364 |
| MS.gene071628.t1 | AT3G09410 | 46.721 | 366 | 172 | 4 | 15 | 361 | 31 | 392 | 2.62e-119 | 352 |
| MS.gene071628.t1 | AT5G45280 | 46.264 | 348 | 169 | 4 | 49 | 378 | 24 | 371 | 1.55e-117 | 347 |
| MS.gene071628.t1 | AT4G19410 | 44.101 | 356 | 181 | 3 | 49 | 386 | 24 | 379 | 7.72e-117 | 345 |
| MS.gene071628.t1 | AT3G09405 | 44.681 | 376 | 186 | 5 | 29 | 385 | 32 | 404 | 9.67e-117 | 346 |
| MS.gene071628.t1 | AT4G19410 | 45.349 | 344 | 170 | 3 | 49 | 374 | 24 | 367 | 1.00e-114 | 345 |
| MS.gene071628.t1 | AT5G45280 | 48.582 | 282 | 137 | 2 | 49 | 322 | 24 | 305 | 5.40e-102 | 307 |
| MS.gene071628.t1 | AT4G19420 | 58.559 | 222 | 84 | 2 | 49 | 262 | 25 | 246 | 7.77e-92 | 278 |
| MS.gene071628.t1 | AT3G09405 | 44.295 | 298 | 145 | 4 | 107 | 385 | 2 | 297 | 3.20e-90 | 275 |
Find 0 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTATTTTAAAGATT+AGG | - | 10463:8207-8226 | MS.gene071628:intergenic | 10.0% |
| !! | ACTATAAAAAGATATAAACA+AGG | - | 10463:6155-6174 | MS.gene071628:intergenic | 15.0% |
| !! | CTATAAAAAGATATAAACAA+GGG | - | 10463:6154-6173 | MS.gene071628:intergenic | 15.0% |
| !! | TATTTAGTATAATATAGCAT+TGG | + | 10463:7856-7875 | MS.gene071628:intron | 15.0% |
| !! | TGATAAGAATTACAAATTTA+TGG | - | 10463:7892-7911 | MS.gene071628:intergenic | 15.0% |
| !! | TTTAATTAATATAATGCTGA+AGG | + | 10463:6256-6275 | MS.gene071628:intron | 15.0% |
| !!! | AAAGTATTGTTATTAAACTT+TGG | - | 10463:6677-6696 | MS.gene071628:intergenic | 15.0% |
| !!! | ATATCTTTTTATAGTTACAA+TGG | + | 10463:6160-6179 | MS.gene071628:intron | 15.0% |
| !! | ACTTTATCTTGTATACATTA+AGG | + | 10463:8376-8395 | MS.gene071628:intron | 20.0% |
| !! | ATTTCATACAATAACTCAAA+GGG | - | 10463:6021-6040 | MS.gene071628:intergenic | 20.0% |
| !! | CTAATCAATATATGTATATC+AGG | + | 10463:7529-7548 | MS.gene071628:intron | 20.0% |
| !! | GTTTAATAACAATACTTTCA+AGG | + | 10463:6679-6698 | MS.gene071628:intron | 20.0% |
| !!! | AAAATCCCTTAAGATTTTTA+TGG | + | 10463:7234-7253 | MS.gene071628:intron | 20.0% |
| !!! | AAATCTTAAGGGATTTTAAT+AGG | - | 10463:7231-7250 | MS.gene071628:intergenic | 20.0% |
| !!! | ATAGGAATTTTATAGATAAG+AGG | - | 10463:7213-7232 | MS.gene071628:intergenic | 20.0% |
| !!! | TAGGAATTTTATAGATAAGA+GGG | - | 10463:7212-7231 | MS.gene071628:intergenic | 20.0% |
| !!! | TGTTTTAATTGTCATGAATT+TGG | + | 10463:7060-7079 | MS.gene071628:intron | 20.0% |
| !!! | TTCTTTATCCTACATAATTT+TGG | + | 10463:6969-6988 | MS.gene071628:intron | 20.0% |
| !!! | TTTACTCTTTTTAACACAAT+AGG | - | 10463:6508-6527 | MS.gene071628:intergenic | 20.0% |
| ! | AAAAAGTTGTCTCAACAAAA+TGG | + | 10463:8140-8159 | MS.gene071628:CDS | 25.0% |
| ! | AAATTCACCAACTAAAGTAA+TGG | - | 10463:6063-6082 | MS.gene071628:intergenic | 25.0% |
| ! | AACAAATGCCAAAATTATGT+AGG | - | 10463:6980-6999 | MS.gene071628:intergenic | 25.0% |
| ! | AACAACAACATAAAGAAACA+TGG | - | 10463:7485-7504 | MS.gene071628:intergenic | 25.0% |
| ! | AATTCACCAACTAAAGTAAT+GGG | - | 10463:6062-6081 | MS.gene071628:intergenic | 25.0% |
| ! | AATTTCGTGGACAAAAAATA+TGG | + | 10463:7404-7423 | MS.gene071628:CDS | 25.0% |
| ! | AATTTGCATTCTTAGTTTCT+GGG | + | 10463:5792-5811 | MS.gene071628:CDS | 25.0% |
| ! | ACAACAACATAAAGAAACAT+GGG | - | 10463:7484-7503 | MS.gene071628:intergenic | 25.0% |
| ! | ACACTTTCTAAATTCCTATA+GGG | + | 10463:6813-6832 | MS.gene071628:intron | 25.0% |
| ! | ATTCCAAATGATCAATCTTT+CGG | - | 10463:7327-7346 | MS.gene071628:intergenic | 25.0% |
| ! | CATTTCATACAATAACTCAA+AGG | - | 10463:6022-6041 | MS.gene071628:intergenic | 25.0% |
| ! | CTGATATCAAATATTTGCAA+AGG | - | 10463:8081-8100 | MS.gene071628:intergenic | 25.0% |
| ! | GACTTTCTTCTAAATATAGT+AGG | - | 10463:6726-6745 | MS.gene071628:intergenic | 25.0% |
| ! | TATATTTAGAAGAAAGTCGA+TGG | + | 10463:6728-6747 | MS.gene071628:intron | 25.0% |
| ! | TTGTGTAGAATTGATATATC+TGG | + | 10463:7759-7778 | MS.gene071628:intron | 25.0% |
| !! | AAAGAGAATCTAAAATGATG+AGG | - | 10463:6104-6123 | MS.gene071628:intergenic | 25.0% |
| !! | ACTATCGATTATTTCATCTA+AGG | - | 10463:8924-8943 | MS.gene071628:intergenic | 25.0% |
| !! | AGGAATTTTATAGATAAGAG+GGG | - | 10463:7211-7230 | MS.gene071628:intergenic | 25.0% |
| !! | ATTTTGTTGAGACAACTTTT+TGG | - | 10463:8141-8160 | MS.gene071628:intergenic | 25.0% |
| !! | TATATAAAGTGTCTAGTCAA+TGG | - | 10463:7719-7738 | MS.gene071628:intergenic | 25.0% |
| !! | TGTTTTACGTCTTTGATAAA+AGG | + | 10463:8047-8066 | MS.gene071628:intron | 25.0% |
| !!! | CAGTACTATTTTGAAATTGT+AGG | + | 10463:8098-8117 | MS.gene071628:intron | 25.0% |
| !!! | TCATACGATTTTATTTTCTC+TGG | + | 10463:8950-8969 | MS.gene071628:intron | 25.0% |
| ACTAATTCTGCTAAAAGCTT+AGG | + | 10463:7984-8003 | MS.gene071628:intron | 30.0% | |
| ACTGGAATAGAGTCAAATTA+AGG | + | 10463:7117-7136 | MS.gene071628:CDS | 30.0% | |
| AGCCTTCCATAAAAATCTTA+AGG | - | 10463:7243-7262 | MS.gene071628:intergenic | 30.0% | |
| AGGGTATAATATTCTATGCA+AGG | - | 10463:6002-6021 | MS.gene071628:intergenic | 30.0% | |
| ATATGAGGTTGCAATGAATT+AGG | - | 10463:5878-5897 | MS.gene071628:intergenic | 30.0% | |
| CTCTTTCTTTAACTATGCTA+TGG | + | 10463:6774-6793 | MS.gene071628:intron | 30.0% | |
| GAATTTGCATTCTTAGTTTC+TGG | + | 10463:5791-5810 | MS.gene071628:CDS | 30.0% | |
| GACACTTTCTAAATTCCTAT+AGG | + | 10463:6812-6831 | MS.gene071628:intron | 30.0% | |
| GCCTTCCATAAAAATCTTAA+GGG | - | 10463:7242-7261 | MS.gene071628:intergenic | 30.0% | |
| GTAGGATAAAGAAAATACCT+GGG | - | 10463:6962-6981 | MS.gene071628:intergenic | 30.0% | |
| TAATTCATTGCAACCTCATA+TGG | + | 10463:5877-5896 | MS.gene071628:CDS | 30.0% | |
| TACACAATTGAACAGATCAT+AGG | - | 10463:7746-7765 | MS.gene071628:intergenic | 30.0% | |
| TGCTTCGAATATTCAAAACT+TGG | - | 10463:8234-8253 | MS.gene071628:intergenic | 30.0% | |
| TGTAGAATTGATATATCTGG+AGG | + | 10463:7762-7781 | MS.gene071628:intron | 30.0% | |
| TGTAGGATAAAGAAAATACC+TGG | - | 10463:6963-6982 | MS.gene071628:intergenic | 30.0% | |
| TTGTTCAATCTTAATGTTCG+TGG | + | 10463:7500-7519 | MS.gene071628:intron | 30.0% | |
| ! | AAATAGTTGGCTTATTCATC+TGG | + | 10463:6633-6652 | MS.gene071628:CDS | 30.0% |
| ! | GAGTAATATGTGTGTGATTT+TGG | + | 10463:7355-7374 | MS.gene071628:intron | 30.0% |
| ! | TCCCTTAAGATTTTTATGGA+AGG | + | 10463:7238-7257 | MS.gene071628:intron | 30.0% |
| ! | TTGACTTTCCATGTATTTTG+AGG | - | 10463:6898-6917 | MS.gene071628:intergenic | 30.0% |
| !! | AACTTTTTGGCAGATTTTTC+TGG | - | 10463:8128-8147 | MS.gene071628:intergenic | 30.0% |
| !! | CACTTCACTTTTGAAGATTT+TGG | - | 10463:7626-7645 | MS.gene071628:intergenic | 30.0% |
| !!! | TGATTTTGGTTCTTTTATCC+AGG | + | 10463:7369-7388 | MS.gene071628:intron | 30.0% |
| AAAGAAATCTGTGCATGGAA+TGG | - | 10463:7096-7115 | MS.gene071627:intergenic | 35.0% | |
| AACTATTGTCTCAAGGAATG+CGG | + | 10463:7443-7462 | MS.gene071628:CDS | 35.0% | |
| AATAAACCAGAAGAAAACCC+AGG | + | 10463:6942-6961 | MS.gene071628:CDS | 35.0% | |
| AATGAGAATTACCCGAAGTT+GGG | - | 10463:8167-8186 | MS.gene071628:intergenic | 35.0% | |
| ACATGAACTATGTTTCCATC+AGG | + | 10463:8455-8474 | MS.gene071628:intron | 35.0% | |
| ACGCACAATGAGAATATGTT+TGG | + | 10463:7785-7804 | MS.gene071628:CDS | 35.0% | |
| AGCTAACCCATTACTTTAGT+TGG | + | 10463:6053-6072 | MS.gene071628:intron | 35.0% | |
| AGTAGAGATTGAAAACACCT+TGG | - | 10463:8581-8600 | MS.gene071628:intergenic | 35.0% | |
| ATAGAGGAACTATTGTCTCA+AGG | + | 10463:7436-7455 | MS.gene071628:CDS | 35.0% | |
| ATTCAAATCCACGATCCAAA+TGG | - | 10463:6606-6625 | MS.gene071628:intergenic | 35.0% | |
| CAAACAAGCATAAGATACTC+TGG | - | 10463:6457-6476 | MS.gene071628:intergenic | 35.0% | |
| CAAACCTTGTCATCAATAAG+AGG | - | 10463:8865-8884 | MS.gene071628:intergenic | 35.0% | |
| CACAATGAGAATATGTTTGG+AGG | + | 10463:7788-7807 | MS.gene071628:CDS | 35.0% | |
| CAGTTAAAGAAATCTGTGCA+TGG | - | 10463:7101-7120 | MS.gene071628:intergenic | 35.0% | |
| CATGCACAGATTTCTTTAAC+TGG | + | 10463:7099-7118 | MS.gene071628:intron | 35.0% | |
| CTACCGAAAGATTGATCATT+TGG | + | 10463:7321-7340 | MS.gene071628:intron | 35.0% | |
| CTCCACTTCACAACAATATA+AGG | - | 10463:6219-6238 | MS.gene071628:intergenic | 35.0% | |
| CTTATATTGTTGTGAAGTGG+AGG | + | 10463:6217-6236 | MS.gene071628:intron | 35.0% | |
| CTTTCTAAATTCCTATAGGG+AGG | + | 10463:6816-6835 | MS.gene071628:intron | 35.0% | |
| GAAAGTCAAATACCATTCAC+AGG | + | 10463:6909-6928 | MS.gene071628:CDS | 35.0% | |
| GAACTCATCACAGTGTATTA+TGG | - | 10463:7591-7610 | MS.gene071628:intergenic | 35.0% | |
| GCAATTAACTCAGTCACTAA+AGG | - | 10463:7302-7321 | MS.gene071628:intergenic | 35.0% | |
| TACAGAAAAAAGACTCATCG+TGG | + | 10463:6870-6889 | MS.gene071628:CDS | 35.0% | |
| TGAAGAACTGTGTGGTTAAT+GGG | - | 10463:7943-7962 | MS.gene071628:intergenic | 35.0% | |
| TGCCTTATATTGTTGTGAAG+TGG | + | 10463:6214-6233 | MS.gene071628:intron | 35.0% | |
| TGTGCATAACTCAAACTCTT+CGG | + | 10463:6292-6311 | MS.gene071628:intron | 35.0% | |
| TTCTCAAGATCATCTCAAAC+TGG | + | 10463:8769-8788 | MS.gene071628:CDS | 35.0% | |
| TTGAAGAACTGTGTGGTTAA+TGG | - | 10463:7944-7963 | MS.gene071628:intergenic | 35.0% | |
| TTGAATCTGGTGCAAATAGT+TGG | + | 10463:6620-6639 | MS.gene071628:CDS | 35.0% | |
| TTGCTCAATATTCCTGTGAA+TGG | - | 10463:6924-6943 | MS.gene071628:intergenic | 35.0% | |
| ! | AAAATACCTGGGTTTTCTTC+TGG | - | 10463:6951-6970 | MS.gene071628:intergenic | 35.0% |
| ! | TGCAAGGTTCTAATACAAAG+AGG | - | 10463:5986-6005 | MS.gene071628:intergenic | 35.0% |
| !! | AAGATTTTGGTAACAAGCTC+TGG | - | 10463:7613-7632 | MS.gene071628:intergenic | 35.0% |
| !! | AATGGGTTAGCTTCAAAATG+TGG | - | 10463:6045-6064 | MS.gene071628:intergenic | 35.0% |
| !! | GATTTCTGAAGTCGTTTCAA+AGG | - | 10463:8726-8745 | MS.gene071628:intergenic | 35.0% |
| !! | GTCAAATTAAGGTACTGTGA+TGG | + | 10463:7128-7147 | MS.gene071628:CDS | 35.0% |
| !! | TCATAGCTTTGACAACTTCT+CGG | - | 10463:9050-9069 | MS.gene071628:intergenic | 35.0% |
| AACAAAATGGACCCAACTTC+GGG | + | 10463:8153-8172 | MS.gene071628:CDS | 40.0% | |
| AACATTGCCTGGTTACCATT+TGG | + | 10463:6588-6607 | MS.gene071628:CDS | 40.0% | |
| AGAGATTGAAAACACCTTGG+AGG | - | 10463:8578-8597 | MS.gene071628:intergenic | 40.0% | |
| ATTATGGCAGCTATTGTCAC+AGG | - | 10463:9084-9103 | MS.gene071628:intergenic | 40.0% | |
| CAACAAAATGGACCCAACTT+CGG | + | 10463:8152-8171 | MS.gene071628:CDS | 40.0% | |
| CATAGTTGCAGCATCAATGA+GGG | - | 10463:7026-7045 | MS.gene071628:intergenic | 40.0% | |
| CCAAAACTTGAAGAACTGTG+TGG | - | 10463:7951-7970 | MS.gene071628:intergenic | 40.0% | |
| GAATGAGAATTACCCGAAGT+TGG | - | 10463:8168-8187 | MS.gene071628:intergenic | 40.0% | |
| TCAAATGCTTGACGACATGA+AGG | + | 10463:8744-8763 | MS.gene071628:intron | 40.0% | |
| TCGTGGTTCCTCAAAATACA+TGG | + | 10463:6887-6906 | MS.gene071628:CDS | 40.0% | |
| TCTAAATTCCTATAGGGAGG+AGG | + | 10463:6819-6838 | MS.gene071628:intron | 40.0% | |
| TCTTATCACCACAGTCTGTT+TGG | + | 10463:6561-6580 | MS.gene071628:intron | 40.0% | |
| TGACAATAGCTGCCATAATC+TGG | + | 10463:9085-9104 | MS.gene071628:CDS | 40.0% | |
| TTATGGCAGCTATTGTCACA+GGG | - | 10463:9083-9102 | MS.gene071628:intergenic | 40.0% | |
| TTGGATCGTGGATTTGAATC+TGG | + | 10463:6607-6626 | MS.gene071628:CDS | 40.0% | |
| ! | AAGCTTAGGTTGTCAAGTGA+AGG | + | 10463:7998-8017 | MS.gene071628:intron | 40.0% |
| ! | ATTCAAGGAGCTGATTCCAA+AGG | + | 10463:5914-5933 | MS.gene071628:CDS | 40.0% |
| ! | CTCTCCTCTTATTGATGACA+AGG | + | 10463:8858-8877 | MS.gene071628:CDS | 40.0% |
| ! | GTGAAGTGTTTAAGTGATGC+AGG | + | 10463:7638-7657 | MS.gene071628:CDS | 40.0% |
| ! | GTTCTTTTATCCAGGCTGAA+GGG | + | 10463:7377-7396 | MS.gene071628:intron | 40.0% |
| ! | TAGTTGGCTTATTCATCTGG+AGG | + | 10463:6636-6655 | MS.gene071628:CDS | 40.0% |
| !! | AATATGGCTTGCTGCAATAG+AGG | + | 10463:7420-7439 | MS.gene071628:CDS | 40.0% |
| !! | ACCATTGTTTCTACTCAACG+CGG | + | 10463:8303-8322 | MS.gene071628:CDS | 40.0% |
| !! | CCACACAGTTCTTCAAGTTT+TGG | + | 10463:7948-7967 | MS.gene071628:intron | 40.0% |
| AATTCCTATAGGGAGGAGGA+TGG | + | 10463:6823-6842 | MS.gene071628:intron | 45.0% | |
| ACATGTTCGACCACATTCTG+AGG | - | 10463:8277-8296 | MS.gene071628:intergenic | 45.0% | |
| ACGACATCTCACGACATATG+TGG | + | 10463:6341-6360 | MS.gene071628:intron | 45.0% | |
| AGAGTGAGGTCTACCATATG+AGG | - | 10463:5893-5912 | MS.gene071628:intergenic | 45.0% | |
| AGTGCTTCTTCCTCAGAATG+TGG | + | 10463:8264-8283 | MS.gene071628:intron | 45.0% | |
| ATCACCACAGTCTGTTTGGA+TGG | + | 10463:6565-6584 | MS.gene071628:intron | 45.0% | |
| ATGATGTGTGGCAGGTAACA+TGG | + | 10463:8329-8348 | MS.gene071628:intron | 45.0% | |
| GACATACACAACATGGACAG+CGG | - | 10463:6427-6446 | MS.gene071628:intergenic | 45.0% | |
| GCATAGTTGCAGCATCAATG+AGG | - | 10463:7027-7046 | MS.gene071628:intergenic | 45.0% | |
| GCTGTCCATGTTGTGTATGT+CGG | + | 10463:6426-6445 | MS.gene071628:intron | 45.0% | |
| GTAGACCTCACTCTCATTCA+AGG | + | 10463:5899-5918 | MS.gene071628:CDS | 45.0% | |
| TATGGCAGCTATTGTCACAG+GGG | - | 10463:9082-9101 | MS.gene071628:intergenic | 45.0% | |
| TCTCAAATTCAGCTCCTCCA+AGG | + | 10463:8561-8580 | MS.gene071628:CDS | 45.0% | |
| TCTCCAACAGCAACTGCAAT+TGG | - | 10463:9015-9034 | MS.gene071628:intergenic | 45.0% | |
| TGCTGGAGACAGTGAAAATG+AGG | + | 10463:7160-7179 | MS.gene071628:CDS | 45.0% | |
| TGTTCCATCCAAACAGACTG+TGG | - | 10463:6572-6591 | MS.gene071628:intergenic | 45.0% | |
| TGTTTGGATGGAACATTGCC+TGG | + | 10463:6577-6596 | MS.gene071628:CDS | 45.0% | |
| ! | AAGTGTTGTGTCAGATCCAG+AGG | - | 10463:5825-5844 | MS.gene071628:intergenic | 45.0% |
| ! | ACATTCTGAGGAAGAAGCAC+TGG | - | 10463:8265-8284 | MS.gene071628:intergenic | 45.0% |
| ! | GAACTGTGTGGTTAATGGGT+TGG | - | 10463:7939-7958 | MS.gene071628:intergenic | 45.0% |
| ! | GGTTCTTTTATCCAGGCTGA+AGG | + | 10463:7376-7395 | MS.gene071628:intron | 45.0% |
| ! | GTTTCTGGGTTTATCTCCTC+TGG | + | 10463:5806-5825 | MS.gene071628:CDS | 45.0% |
| ! | TGGAGGTGTAGTCAGTTACA+GGG | + | 10463:7805-7824 | MS.gene071628:intron | 45.0% |
| ! | TTGGAGGTGTAGTCAGTTAC+AGG | + | 10463:7804-7823 | MS.gene071628:intron | 45.0% |
| !! | AAGCACCGACATACACAACA+TGG | - | 10463:6434-6453 | MS.gene071628:intergenic | 45.0% |
| !! | GTGGTTAATGGGTTGGAATG+TGG | - | 10463:7932-7951 | MS.gene071628:intergenic | 45.0% |
| !!! | GAAGCTGCTGCTGATTTTGT+TGG | + | 10463:5763-5782 | MS.gene071628:CDS | 45.0% |
| AGGAATGCGGAATGCAGAAC+AGG | + | 10463:7456-7475 | MS.gene071628:CDS | 50.0% | |
| AGTCATTCCAAGAGCCAAGG+GGG | - | 10463:8512-8531 | MS.gene071628:intergenic | 50.0% | |
| AGTCTGAGAGACAGGAGACA+TGG | + | 10463:8824-8843 | MS.gene071628:CDS | 50.0% | |
| ATGTCTCCTGTCTCTCAGAC+TGG | - | 10463:8825-8844 | MS.gene071628:intergenic | 50.0% | |
| CAGCCAATTGCAGTTGCTGT+TGG | + | 10463:9009-9028 | MS.gene071628:intron | 50.0% | |
| CAGCTATTGTCACAGGGGTA+CGG | - | 10463:9077-9096 | MS.gene071628:intergenic | 50.0% | |
| CAGCTCCTTGAATGAGAGTG+AGG | - | 10463:5907-5926 | MS.gene071628:intergenic | 50.0% | |
| CAGTCATTCCAAGAGCCAAG+GGG | - | 10463:8513-8532 | MS.gene071628:intergenic | 50.0% | |
| CCACGATCCAAATGGTAACC+AGG | - | 10463:6598-6617 | MS.gene071628:intergenic | 50.0% | |
| CCTGGTTACCATTTGGATCG+TGG | + | 10463:6595-6614 | MS.gene071628:CDS | 50.0% | |
| GAAATTGAAGCCCTTCAGCC+TGG | - | 10463:7390-7409 | MS.gene071628:intergenic | 50.0% | |
| GAGAGAGATACCAGCTCCTT+TGG | - | 10463:5933-5952 | MS.gene071628:intergenic | 50.0% | |
| GCAGTCATTCCAAGAGCCAA+GGG | - | 10463:8514-8533 | MS.gene071628:intergenic | 50.0% | |
| GCCGCGTTGAGTAGAAACAA+TGG | - | 10463:8307-8326 | MS.gene071628:intergenic | 50.0% | |
| GCTGAAGGGCTTCAATTTCG+TGG | + | 10463:7391-7410 | MS.gene071628:CDS | 50.0% | |
| GTATATCAGGCCCTTCTCTC+TGG | + | 10463:7542-7561 | MS.gene071628:intron | 50.0% | |
| TCAACGCGGCTTATGATGTG+TGG | + | 10463:8317-8336 | MS.gene071628:CDS | 50.0% | |
| TCATTGCCAGTCTGAGAGAC+AGG | + | 10463:8816-8835 | MS.gene071628:CDS | 50.0% | |
| TGCAGTCATTCCAAGAGCCA+AGG | - | 10463:8515-8534 | MS.gene071628:intergenic | 50.0% | |
| ! | AGCTATTGTCACAGGGGTAC+GGG | - | 10463:9076-9095 | MS.gene071628:intergenic | 50.0% |
| ! | TTGCAGTTGCTGTTGGAGAC+TGG | + | 10463:9016-9035 | MS.gene071628:CDS | 50.0% |
| !! | AGCTGTCTTTGGGGCTAAAC+TGG | - | 10463:8487-8506 | MS.gene071628:intergenic | 50.0% |
| !! | CTAAACTGGCTTGGACCTGA+TGG | - | 10463:8473-8492 | MS.gene071628:intergenic | 50.0% |
| !! | TCTTTGGGGCTAAACTGGCT+TGG | - | 10463:8482-8501 | MS.gene071628:intergenic | 50.0% |
| !! | TGTGATGGAGCGTCTTTTGC+TGG | + | 10463:7143-7162 | MS.gene071628:CDS | 50.0% |
| AAGGGGGTCAGCTGTCTTTG+GGG | - | 10463:8496-8515 | MS.gene071628:intergenic | 55.0% | |
| CAAGGGGGTCAGCTGTCTTT+GGG | - | 10463:8497-8516 | MS.gene071628:intergenic | 55.0% | |
| CACACCATCCTCCTCCCTAT+AGG | - | 10463:6830-6849 | MS.gene071628:intergenic | 55.0% | |
| CCTTCTCTCTGGATGCTCTG+CGG | + | 10463:7553-7572 | MS.gene071628:CDS | 55.0% | |
| CTTCTCTCTGGATGCTCTGC+GGG | + | 10463:7554-7573 | MS.gene071628:CDS | 55.0% | |
| ! | CGCAGAGCATCCAGAGAGAA+GGG | - | 10463:7555-7574 | MS.gene071628:intergenic | 55.0% |
| ! | GGAGCTGATTCCAAAGGAGC+TGG | + | 10463:5920-5939 | MS.gene071628:CDS | 55.0% |
| CCAAAGACAGCTGACCCCCT+TGG | + | 10463:8495-8514 | MS.gene071628:CDS | 60.0% | |
| CCAAGGGGGTCAGCTGTCTT+TGG | - | 10463:8498-8517 | MS.gene071628:intergenic | 60.0% | |
| CGCGGCTTATGATGTGTGGC+AGG | + | 10463:8321-8340 | MS.gene071628:CDS | 60.0% | |
| ! | CCGCAGAGCATCCAGAGAGA+AGG | - | 10463:7556-7575 | MS.gene071628:intergenic | 60.0% |
| CTCTCTGGATGCTCTGCGGG+TGG | + | 10463:7557-7576 | MS.gene071628:CDS | 65.0% | |
| ! | CAGCTGACCCCCTTGGCTCT+TGG | + | 10463:8502-8521 | MS.gene071628:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10463 | gene | 5755 | 9118 | 5755 | ID=MS.gene071628 |
| 10463 | mRNA | 5755 | 9118 | 5755 | ID=MS.gene071628.t1;Parent=MS.gene071628 |
| 10463 | exon | 5755 | 5941 | 5755 | ID=MS.gene071628.t1.exon1;Parent=MS.gene071628.t1 |
| 10463 | CDS | 5755 | 5941 | 5755 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 6575 | 6657 | 6575 | ID=MS.gene071628.t1.exon2;Parent=MS.gene071628.t1 |
| 10463 | CDS | 6575 | 6657 | 6575 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 6834 | 6963 | 6834 | ID=MS.gene071628.t1.exon3;Parent=MS.gene071628.t1 |
| 10463 | CDS | 6834 | 6963 | 6834 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 7108 | 7181 | 7108 | ID=MS.gene071628.t1.exon4;Parent=MS.gene071628.t1 |
| 10463 | CDS | 7108 | 7181 | 7108 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 7391 | 7477 | 7391 | ID=MS.gene071628.t1.exon5;Parent=MS.gene071628.t1 |
| 10463 | CDS | 7391 | 7477 | 7391 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 7551 | 7675 | 7551 | ID=MS.gene071628.t1.exon6;Parent=MS.gene071628.t1 |
| 10463 | CDS | 7551 | 7675 | 7551 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 7767 | 7809 | 7767 | ID=MS.gene071628.t1.exon7;Parent=MS.gene071628.t1 |
| 10463 | CDS | 7767 | 7809 | 7767 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 8120 | 8174 | 8120 | ID=MS.gene071628.t1.exon8;Parent=MS.gene071628.t1 |
| 10463 | CDS | 8120 | 8174 | 8120 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 8266 | 8342 | 8266 | ID=MS.gene071628.t1.exon9;Parent=MS.gene071628.t1 |
| 10463 | CDS | 8266 | 8342 | 8266 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 8477 | 8584 | 8477 | ID=MS.gene071628.t1.exon10;Parent=MS.gene071628.t1 |
| 10463 | CDS | 8477 | 8584 | 8477 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 8766 | 8879 | 8766 | ID=MS.gene071628.t1.exon11;Parent=MS.gene071628.t1 |
| 10463 | CDS | 8766 | 8879 | 8766 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| 10463 | exon | 9012 | 9118 | 9012 | ID=MS.gene071628.t1.exon12;Parent=MS.gene071628.t1 |
| 10463 | CDS | 9012 | 9118 | 9012 | ID=cds.MS.gene071628.t1;Parent=MS.gene071628.t1 |
| Gene Sequence |
| Protein sequence |
