Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053437.t1 | GAU25302.1 | 90.1 | 151 | 15 | 0 | 4 | 154 | 1 | 151 | 1.80E-74 | 288.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053437.t1 | Q6NM73 | 56.2 | 153 | 52 | 2 | 17 | 154 | 155 | 307 | 3.9e-41 | 169.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053437.t1 | A0A2Z6MJ25 | 90.1 | 151 | 15 | 0 | 4 | 154 | 1 | 151 | 1.3e-74 | 288.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene053437 | 0.813852 | 2.08E-51 | -1.69E-46 |
| MS.gene050778 | MS.gene053437 | 0.814467 | 1.52E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene053437 | 0.822661 | 2.10E-53 | -1.69E-46 |
| MS.gene051063 | MS.gene053437 | 0.80324 | 3.83E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene053437 | 0.811289 | 7.54E-51 | -1.69E-46 |
| MS.gene052856 | MS.gene053437 | 0.820198 | 7.79E-53 | -1.69E-46 |
| MS.gene053132 | MS.gene053437 | 0.821004 | 5.08E-53 | -1.69E-46 |
| MS.gene053437 | MS.gene055174 | 0.808748 | 2.66E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene055591 | -0.802962 | 4.37E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene056069 | -0.81342 | 2.58E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene056432 | 0.810499 | 1.12E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene057057 | 0.818328 | 2.08E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene058182 | 0.821885 | 3.18E-53 | -1.69E-46 |
| MS.gene053437 | MS.gene058851 | 0.804878 | 1.75E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene058906 | 0.829321 | 5.49E-55 | -1.69E-46 |
| MS.gene053437 | MS.gene059171 | 0.800328 | 1.52E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene06001 | 0.824961 | 6.08E-54 | -1.69E-46 |
| MS.gene053437 | MS.gene060165 | 0.803924 | 2.76E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene060476 | 0.807149 | 5.82E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene060619 | 0.822415 | 2.40E-53 | -1.69E-46 |
| MS.gene053437 | MS.gene061618 | 0.89313 | 8.37E-75 | -1.69E-46 |
| MS.gene053437 | MS.gene062352 | 0.861608 | 9.10E-64 | -1.69E-46 |
| MS.gene053437 | MS.gene063452 | 0.803061 | 4.17E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene064071 | 0.802176 | 6.35E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene064072 | 0.802177 | 6.35E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene064944 | 0.817926 | 2.56E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene065136 | -0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene065378 | 0.813637 | 2.31E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene06594 | 0.825779 | 3.89E-54 | -1.69E-46 |
| MS.gene053437 | MS.gene067029 | 0.809146 | 2.19E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene067071 | 0.803684 | 3.10E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene06806 | 0.829641 | 4.60E-55 | -1.69E-46 |
| MS.gene053437 | MS.gene068553 | 0.82827 | 9.87E-55 | -1.69E-46 |
| MS.gene053437 | MS.gene068659 | 0.819656 | 1.04E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene068695 | 0.81518 | 1.05E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene07089 | 0.831775 | 1.38E-55 | -1.69E-46 |
| MS.gene053437 | MS.gene071290 | 0.813355 | 2.67E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene071298 | 0.806709 | 7.21E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene071628 | 0.805459 | 1.32E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene072115 | 0.810696 | 1.01E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene07217 | 0.805361 | 1.39E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene07222 | 0.803641 | 3.16E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene072907 | 0.805015 | 1.64E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene073275 | 0.819795 | 9.63E-53 | -1.69E-46 |
| MS.gene053437 | MS.gene073827 | 0.848957 | 4.40E-60 | -1.69E-46 |
| MS.gene053437 | MS.gene073884 | 0.836824 | 7.46E-57 | -1.69E-46 |
| MS.gene053437 | MS.gene074465 | 0.817543 | 3.12E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene08545 | 0.801569 | 8.46E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene09032 | 0.804836 | 1.78E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene20740 | 0.801021 | 1.10E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene21089 | 0.817526 | 3.15E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene21200 | 0.820871 | 5.46E-53 | -1.69E-46 |
| MS.gene053437 | MS.gene22436 | 0.807771 | 4.30E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene23059 | 0.806853 | 6.72E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene23105 | 0.825202 | 5.33E-54 | -1.69E-46 |
| MS.gene053437 | MS.gene25077 | 0.811986 | 5.32E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene25229 | 0.801666 | 8.09E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene25754 | 0.813208 | 2.88E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene26267 | 0.816945 | 4.26E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene27991 | 0.828535 | 8.52E-55 | -1.69E-46 |
| MS.gene053437 | MS.gene28929 | 0.801428 | 9.05E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene28943 | 0.80054 | 1.37E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene30530 | 0.812431 | 4.25E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene30964 | 0.840488 | 8.44E-58 | -1.69E-46 |
| MS.gene053437 | MS.gene31148 | 0.835199 | 1.93E-56 | -1.69E-46 |
| MS.gene053437 | MS.gene33907 | 0.802179 | 6.34E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene35147 | 0.828355 | 9.41E-55 | -1.69E-46 |
| MS.gene053437 | MS.gene35214 | 0.809499 | 1.84E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene36245 | 0.803057 | 4.18E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene36482 | 0.800731 | 1.26E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene38293 | 0.83251 | 9.07E-56 | -1.69E-46 |
| MS.gene053437 | MS.gene38515 | 0.815611 | 8.46E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene40106 | 0.814511 | 1.48E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene41132 | 0.822552 | 2.23E-53 | -1.69E-46 |
| MS.gene053437 | MS.gene41870 | 0.82086 | 5.49E-53 | -1.69E-46 |
| MS.gene053437 | MS.gene43209 | 0.826352 | 2.84E-54 | -1.69E-46 |
| MS.gene053437 | MS.gene43884 | 0.806095 | 9.72E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene44135 | -0.81479 | 1.29E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene44141 | 0.805876 | 1.08E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene44540 | 0.802464 | 5.54E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene45498 | 0.837704 | 4.44E-57 | -1.69E-46 |
| MS.gene053437 | MS.gene46473 | 0.813097 | 3.04E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene47955 | 0.824061 | 9.90E-54 | -1.69E-46 |
| MS.gene053437 | MS.gene49203 | 0.806914 | 6.53E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene51240 | 0.800723 | 1.26E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene55422 | 0.812303 | 4.54E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene55732 | 0.815466 | 9.11E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene55887 | 0.802441 | 5.60E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene56555 | 0.862474 | 4.94E-64 | -1.69E-46 |
| MS.gene053437 | MS.gene59876 | 0.811709 | 6.11E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene62682 | 0.811992 | 5.30E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene63327 | 0.811778 | 5.91E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene63902 | 0.831533 | 1.58E-55 | -1.69E-46 |
| MS.gene053437 | MS.gene67884 | 0.81189 | 5.58E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene69262 | 0.80093 | 1.14E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene70514 | 0.818675 | 1.73E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene70819 | 0.81421 | 1.73E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene73391 | 0.839298 | 1.72E-57 | -1.69E-46 |
| MS.gene053437 | MS.gene74226 | 0.806499 | 7.99E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene74980 | 0.817125 | 3.88E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene75477 | 0.800282 | 1.55E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene78973 | 0.804706 | 1.90E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene79900 | 0.807568 | 4.74E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene81361 | 0.814683 | 1.36E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene82040 | 0.800703 | 1.27E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene82548 | 0.805103 | 1.57E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene82624 | 0.805046 | 1.61E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene86350 | 0.815857 | 7.46E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene86678 | 0.842439 | 2.58E-58 | -1.69E-46 |
| MS.gene053437 | MS.gene88087 | 0.857195 | 1.93E-62 | -1.69E-46 |
| MS.gene053437 | MS.gene88229 | 0.826719 | 2.33E-54 | -1.69E-46 |
| MS.gene053437 | MS.gene88645 | 0.806033 | 1.00E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene89721 | 0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene90787 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene96810 | 0.866662 | 2.42E-65 | -1.69E-46 |
| MS.gene053437 | MS.gene97761 | 0.810053 | 1.40E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene98699 | 0.817036 | 4.06E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene99313 | 0.810728 | 9.98E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053437.t1 | MTR_1g044580 | 98.667 | 150 | 2 | 0 | 3 | 152 | 141 | 290 | 2.26e-102 | 308 |
| MS.gene053437.t1 | MTR_1g073320 | 70.000 | 160 | 38 | 1 | 3 | 152 | 139 | 298 | 4.63e-71 | 217 |
| MS.gene053437.t1 | MTR_7g098410 | 47.651 | 149 | 76 | 2 | 5 | 152 | 135 | 282 | 1.39e-41 | 140 |
| MS.gene053437.t1 | MTR_1g080350 | 37.333 | 150 | 92 | 2 | 6 | 154 | 147 | 295 | 1.39e-27 | 104 |
| MS.gene053437.t1 | MTR_1g044560 | 43.689 | 103 | 58 | 0 | 4 | 106 | 24 | 126 | 2.62e-22 | 86.3 |
| MS.gene053437.t1 | MTR_8g104990 | 37.241 | 145 | 87 | 3 | 9 | 151 | 138 | 280 | 1.28e-19 | 83.2 |
| MS.gene053437.t1 | MTR_3g065370 | 38.384 | 99 | 56 | 2 | 53 | 149 | 177 | 272 | 5.27e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053437.t1 | AT1G04520 | 64.072 | 167 | 45 | 3 | 3 | 154 | 141 | 307 | 3.45e-66 | 204 |
| MS.gene053437.t1 | AT2G33330 | 62.346 | 162 | 51 | 2 | 3 | 154 | 143 | 304 | 1.29e-63 | 197 |
| MS.gene053437.t1 | AT3G04370 | 41.611 | 149 | 84 | 2 | 6 | 153 | 172 | 318 | 1.56e-34 | 123 |
| MS.gene053437.t1 | AT3G04370 | 41.611 | 149 | 84 | 2 | 6 | 153 | 171 | 317 | 1.89e-34 | 122 |
| MS.gene053437.t1 | AT5G43980 | 39.752 | 161 | 87 | 3 | 3 | 154 | 141 | 300 | 2.84e-33 | 119 |
| MS.gene053437.t1 | AT3G60720 | 33.557 | 149 | 84 | 5 | 6 | 150 | 143 | 280 | 3.73e-16 | 73.9 |
| MS.gene053437.t1 | AT3G60720 | 33.793 | 145 | 81 | 5 | 6 | 146 | 143 | 276 | 1.51e-15 | 72.0 |
| MS.gene053437.t1 | AT2G01660 | 38.298 | 94 | 53 | 2 | 53 | 143 | 185 | 276 | 5.01e-12 | 62.4 |
| MS.gene053437.t1 | AT2G01660 | 38.298 | 94 | 53 | 2 | 53 | 143 | 185 | 276 | 5.29e-12 | 62.4 |
Find 28 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTATCAGCGATGGAAAA+TGG | 0.195405 | 1.4:-29025298 | MS.gene053437:CDS |
| GAATGTGGCAACTCTATTTC+TGG | 0.253750 | 1.4:-29025145 | MS.gene053437:CDS |
| CATAAGTGTTTCATTAGTTA+TGG | 0.313486 | 1.4:-29025109 | MS.gene053437:CDS |
| GCACAATGTGAAGGTGATAT+TGG | 0.371110 | 1.4:-29025220 | MS.gene053437:CDS |
| CTTTATCAGCGATGGAAAAT+GGG | 0.376842 | 1.4:-29025297 | MS.gene053437:CDS |
| AATGTTGCTGGAAGTGGTTT+TGG | 0.382953 | 1.4:-29025337 | MS.gene053437:CDS |
| TGTCTAGATGGAACTCCATT+AGG | 0.401134 | 1.4:+29025079 | None:intergenic |
| AATGGGGTTGTTAGTGGTCA+TGG | 0.418001 | 1.4:-29025280 | MS.gene053437:CDS |
| TATCTTGCACAGATTATTGA+AGG | 0.421513 | 1.4:-29024279 | None:intergenic |
| AGTTATGGCTATTATCCTAA+TGG | 0.427351 | 1.4:-29025094 | MS.gene053437:CDS |
| GCAATGACAGGGCAAGATCC+AGG | 0.447894 | 1.4:-29024510 | MS.gene053437:intron |
| ATAATACTAGGAGGAATTGC+TGG | 0.462780 | 1.4:-29024474 | MS.gene053437:CDS |
| TGTGGGATAACAAATGTTGC+TGG | 0.470043 | 1.4:-29025349 | MS.gene053437:CDS |
| GAATATGAAGAATGTCTAGA+TGG | 0.484195 | 1.4:+29025067 | None:intergenic |
| ATGGAAAATGGGGTTGTTAG+TGG | 0.485449 | 1.4:-29025286 | MS.gene053437:CDS |
| TTATATTCTTGCTATTTGCT+AGG | 0.498339 | 1.4:-29024437 | MS.gene053437:CDS |
| ATAACAAATGTTGCTGGAAG+TGG | 0.510378 | 1.4:-29025343 | MS.gene053437:CDS |
| AAAACAGCTGCTATAATACT+AGG | 0.532912 | 1.4:-29024486 | MS.gene053437:CDS |
| CAGATGCTCTATAAGACTTG+TGG | 0.533238 | 1.4:-29025367 | MS.gene053437:CDS |
| AGATGCTCTATAAGACTTGT+GGG | 0.545982 | 1.4:-29025366 | MS.gene053437:CDS |
| GGACGCTGCTTTATCAGCGA+TGG | 0.565779 | 1.4:-29025305 | MS.gene053437:CDS |
| ACTAGGAGGAATTGCTGGAG+TGG | 0.599765 | 1.4:-29024469 | MS.gene053437:CDS |
| GATATTGGTGACTCTGATTG+TGG | 0.607730 | 1.4:-29025205 | MS.gene053437:CDS |
| CAATGACAGGGCAAGATCCA+GGG | 0.608246 | 1.4:-29024509 | MS.gene053437:intron |
| CAGAGAGCTCAAGTTGAATG+TGG | 0.627327 | 1.4:-29025160 | MS.gene053437:CDS |
| ACAGCTGCTATAATACTAGG+AGG | 0.630493 | 1.4:-29024483 | MS.gene053437:CDS |
| TTTATCAGCGATGGAAAATG+GGG | 0.640047 | 1.4:-29025296 | MS.gene053437:CDS |
| AATTTGACAAAGAAACACAA+TGG | 0.727029 | 1.4:-29024414 | MS.gene053437:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATATCAATTTAGTTCA+TGG | - | chr1.4:29024812-29024831 | MS.gene053437:intron | 15.0% |
| !!! | TTTTTATACAACAAACTATA+TGG | - | chr1.4:29024404-29024423 | MS.gene053437:intron | 15.0% |
| !! | TGATAATAATTTCAAACTGA+GGG | - | chr1.4:29024972-29024991 | MS.gene053437:intron | 20.0% |
| !!! | ATTTTGAAATATTGATGATG+TGG | - | chr1.4:29025030-29025049 | MS.gene053437:intron | 20.0% |
| !!! | TTGATAATAATTTCAAACTG+AGG | - | chr1.4:29024971-29024990 | MS.gene053437:intron | 20.0% |
| !!! | TTTTGAAATATTGATGATGT+GGG | - | chr1.4:29025031-29025050 | MS.gene053437:intron | 20.0% |
| ! | AAATAAGTAAGTGGATGTAA+TGG | - | chr1.4:29024864-29024883 | MS.gene053437:intron | 25.0% |
| ! | AATTTGACAAAGAAACACAA+TGG | - | chr1.4:29025247-29025266 | MS.gene053437:CDS | 25.0% |
| ! | CATAAGTGTTTCATTAGTTA+TGG | - | chr1.4:29024552-29024571 | MS.gene053437:intron | 25.0% |
| ! | CTTAACCATTGGAAAATTTA+GGG | + | chr1.4:29025085-29025104 | None:intergenic | 25.0% |
| ! | TAACCAACATTTGTCATAAA+GGG | + | chr1.4:29024748-29024767 | None:intergenic | 25.0% |
| ! | TTAACCAACATTTGTCATAA+AGG | + | chr1.4:29024749-29024768 | None:intergenic | 25.0% |
| !! | ATGTAATGGTTGATATTTGT+AGG | - | chr1.4:29024878-29024897 | MS.gene053437:intron | 25.0% |
| !! | CTATATGGCATTTTATGTTT+TGG | - | chr1.4:29024419-29024438 | MS.gene053437:CDS | 25.0% |
| !!! | AAAATAAGTGTCGATTTGTA+TGG | - | chr1.4:29024690-29024709 | MS.gene053437:intron | 25.0% |
| !!! | CTTATTTTTGGTGATCAATT+TGG | + | chr1.4:29024851-29024870 | None:intergenic | 25.0% |
| !!! | TACATCCACTTACTTATTTT+TGG | + | chr1.4:29024863-29024882 | None:intergenic | 25.0% |
| !!! | TTATATTCTTGCTATTTGCT+AGG | - | chr1.4:29025224-29025243 | MS.gene053437:CDS | 25.0% |
| AAAACAGCTGCTATAATACT+AGG | - | chr1.4:29025175-29025194 | MS.gene053437:CDS | 30.0% | |
| AGTTATGGCTATTATCCTAA+TGG | - | chr1.4:29024567-29024586 | MS.gene053437:intron | 30.0% | |
| CCTTAACCATTGGAAAATTT+AGG | + | chr1.4:29025086-29025105 | None:intergenic | 30.0% | |
| CTACACATTGAACCAAAATT+TGG | - | chr1.4:29024652-29024671 | MS.gene053437:intron | 30.0% | |
| GAATATGAAGAATGTCTAGA+TGG | + | chr1.4:29024597-29024616 | None:intergenic | 30.0% | |
| GATCACCAAAAATAAGTAAG+TGG | - | chr1.4:29024855-29024874 | MS.gene053437:intron | 30.0% | |
| ! | CCTAAATTTTCCAATGGTTA+AGG | - | chr1.4:29025083-29025102 | MS.gene053437:CDS | 30.0% |
| ! | GAGATGAATTTGAAACTAAG+TGG | - | chr1.4:29024930-29024949 | MS.gene053437:intron | 30.0% |
| ! | TTTTCCAATGGTTAAGGAAA+AGG | - | chr1.4:29025089-29025108 | MS.gene053437:CDS | 30.0% |
| !! | ATTGAACCAAAATTTGGTGT+TGG | - | chr1.4:29024658-29024677 | MS.gene053437:intron | 30.0% |
| !! | ATTGATTTGATGCAATGACA+GGG | - | chr1.4:29025140-29025159 | MS.gene053437:CDS | 30.0% |
| !! | TATTGATTTGATGCAATGAC+AGG | - | chr1.4:29025139-29025158 | MS.gene053437:CDS | 30.0% |
| !! | TCATATTCGTCATTTTCTTC+AGG | - | chr1.4:29024609-29024628 | MS.gene053437:intron | 30.0% |
| !! | TTGAACCAAAATTTGGTGTT+GGG | - | chr1.4:29024659-29024678 | MS.gene053437:intron | 30.0% |
| !!! | CAAATTTTGGTTCAATGTGT+AGG | + | chr1.4:29024654-29024673 | None:intergenic | 30.0% |
| AACATTTGTCATAAAGGGCA+AGG | + | chr1.4:29024743-29024762 | None:intergenic | 35.0% | |
| AGATGCTCTATAAGACTTGT+GGG | - | chr1.4:29024295-29024314 | MS.gene053437:intron | 35.0% | |
| ATAACAAATGTTGCTGGAAG+TGG | - | chr1.4:29024318-29024337 | MS.gene053437:intron | 35.0% | |
| ATAATACTAGGAGGAATTGC+TGG | - | chr1.4:29025187-29025206 | MS.gene053437:CDS | 35.0% | |
| CTTTATCAGCGATGGAAAAT+GGG | - | chr1.4:29024364-29024383 | MS.gene053437:intron | 35.0% | |
| TTGCCCTTTATGACAAATGT+TGG | - | chr1.4:29024742-29024761 | MS.gene053437:intron | 35.0% | |
| TTTATCAGCGATGGAAAATG+GGG | - | chr1.4:29024365-29024384 | MS.gene053437:intron | 35.0% | |
| ! | AGTACCTTTTCCTTAACCAT+TGG | + | chr1.4:29025096-29025115 | None:intergenic | 35.0% |
| ! | CTTTTCCCAACACCAAATTT+TGG | + | chr1.4:29024667-29024686 | None:intergenic | 35.0% |
| !! | CAAAATTTGGTGTTGGGAAA+AGG | - | chr1.4:29024665-29024684 | MS.gene053437:intron | 35.0% |
| !!! | TATGTTTTGGCACAATGTGA+AGG | - | chr1.4:29024432-29024451 | MS.gene053437:CDS | 35.0% |
| ACAGCTGCTATAATACTAGG+AGG | - | chr1.4:29025178-29025197 | MS.gene053437:CDS | 40.0% | |
| ATGGAAAATGGGGTTGTTAG+TGG | - | chr1.4:29024375-29024394 | MS.gene053437:intron | 40.0% | |
| CAGATGCTCTATAAGACTTG+TGG | - | chr1.4:29024294-29024313 | MS.gene053437:intron | 40.0% | |
| GAATGTGGCAACTCTATTTC+TGG | - | chr1.4:29024516-29024535 | MS.gene053437:intron | 40.0% | |
| GCACAATGTGAAGGTGATAT+TGG | - | chr1.4:29024441-29024460 | MS.gene053437:CDS | 40.0% | |
| GCTTTATCAGCGATGGAAAA+TGG | - | chr1.4:29024363-29024382 | MS.gene053437:intron | 40.0% | |
| TGTCTAGATGGAACTCCATT+AGG | + | chr1.4:29024585-29024604 | None:intergenic | 40.0% | |
| TGTGGGATAACAAATGTTGC+TGG | - | chr1.4:29024312-29024331 | MS.gene053437:intron | 40.0% | |
| ! | AATGTTGCTGGAAGTGGTTT+TGG | - | chr1.4:29024324-29024343 | MS.gene053437:intron | 40.0% |
| ! | CTGCTCCCTAAATTTTCCAA+TGG | - | chr1.4:29025077-29025096 | MS.gene053437:CDS | 40.0% |
| ! | GATATTGGTGACTCTGATTG+TGG | - | chr1.4:29024456-29024475 | MS.gene053437:CDS | 40.0% |
| !! | ATTATAGCAGCTGTTTTCCC+TGG | + | chr1.4:29025172-29025191 | None:intergenic | 40.0% |
| AATGGGGTTGTTAGTGGTCA+TGG | - | chr1.4:29024381-29024400 | MS.gene053437:intron | 45.0% | |
| !! | CAGAGAGCTCAAGTTGAATG+TGG | - | chr1.4:29024501-29024520 | MS.gene053437:CDS | 45.0% |
| !!! | AAGTGGTTTTGGCGAGAGAA+GGG | - | chr1.4:29024335-29024354 | MS.gene053437:intron | 45.0% |
| ACTAGGAGGAATTGCTGGAG+TGG | - | chr1.4:29025192-29025211 | MS.gene053437:CDS | 50.0% | |
| CAATGACAGGGCAAGATCCA+GGG | - | chr1.4:29025152-29025171 | MS.gene053437:CDS | 50.0% | |
| !!! | GAAGTGGTTTTGGCGAGAGA+AGG | - | chr1.4:29024334-29024353 | MS.gene053437:intron | 50.0% |
| GCAATGACAGGGCAAGATCC+AGG | - | chr1.4:29025151-29025170 | MS.gene053437:CDS | 55.0% | |
| ! | GGACGCTGCTTTATCAGCGA+TGG | - | chr1.4:29024356-29024375 | MS.gene053437:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 29024282 | 29025401 | 29024282 | ID=MS.gene053437 |
| chr1.4 | mRNA | 29024282 | 29025401 | 29024282 | ID=MS.gene053437.t1;Parent=MS.gene053437 |
| chr1.4 | exon | 29025053 | 29025401 | 29025053 | ID=MS.gene053437.t1.exon1;Parent=MS.gene053437.t1 |
| chr1.4 | CDS | 29025053 | 29025401 | 29025053 | ID=cds.MS.gene053437.t1;Parent=MS.gene053437.t1 |
| chr1.4 | exon | 29024415 | 29024522 | 29024415 | ID=MS.gene053437.t1.exon2;Parent=MS.gene053437.t1 |
| chr1.4 | CDS | 29024415 | 29024522 | 29024415 | ID=cds.MS.gene053437.t1;Parent=MS.gene053437.t1 |
| chr1.4 | exon | 29024282 | 29024289 | 29024282 | ID=MS.gene053437.t1.exon3;Parent=MS.gene053437.t1 |
| chr1.4 | CDS | 29024282 | 29024289 | 29024282 | ID=cds.MS.gene053437.t1;Parent=MS.gene053437.t1 |
| Gene Sequence |
| Protein sequence |
