AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071733

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071733.t1 MTR_1g016410 81.703 317 43 2 1 313 1 306 0.0 502
MS.gene071733.t1 MTR_1g016410 87.892 223 27 0 91 313 1 223 7.23e-143 402
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071733.t1 AT5G11810 47.634 317 151 7 1 313 1 306 1.08e-91 275

Find 75 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCCGAATATAGGTTTA+TGG 0.144055 1.2:+6568501 MS.gene071733:intron
AGGTTTGTTCATCATGAATT+TGG 0.196282 1.2:-6568109 None:intergenic
GGGGATCAAGCTCCATATTT+TGG 0.200742 1.2:-6569949 None:intergenic
GCTATAATGACCAACCATTC+AGG 0.286488 1.2:+6568535 MS.gene071733:CDS
GCTTTCAAGAGGGAAGGTTT+TGG 0.309366 1.2:+6568680 MS.gene071733:CDS
TTCTCCGAATATAGGTTTAT+GGG 0.317331 1.2:+6568502 MS.gene071733:intron
GATATAAAAGAAATACCTAT+TGG 0.334045 1.2:-6568135 None:intergenic
ATGTGGAAAGCTCCAAAATA+TGG 0.341782 1.2:+6569937 MS.gene071733:CDS
GAAGGAAAACAAGATCAAAT+TGG 0.378636 1.2:-6568710 None:intergenic
AACAAACCTCCATGAAATCT+TGG 0.395605 1.2:-6569441 None:intergenic
AACAACACTGAAGCCAAGTT+TGG 0.396858 1.2:-6568575 None:intergenic
AGCCGATCGCTGATTCTATA+CGG 0.398680 1.2:+6567831 MS.gene071733:CDS
AGGAACCTGAGGATTGGAAT+TGG 0.409480 1.2:-6567946 None:intergenic
GTTGAGATTCTCAAGTTGCT+TGG 0.420759 1.2:+6568658 MS.gene071733:CDS
ATGAACAAACCTTACCCAAT+AGG 0.429754 1.2:+6568120 MS.gene071733:CDS
TAAAAGATTTCAACCCTGAA+TGG 0.433252 1.2:-6568549 None:intergenic
CATGAGCTATGGCAAGGTCT+TGG 0.441819 1.2:+6568870 MS.gene071733:CDS
CTTCTTTGACACTGAAAACC+TGG 0.441872 1.2:-6568905 None:intergenic
ATATAAAAGAAATACCTATT+GGG 0.446107 1.2:-6568134 None:intergenic
TCATGTTGGAGCTGGTGAAA+AGG 0.446577 1.2:+6568731 MS.gene071733:CDS
TGTTGTTCAGTTGGATGAGT+TGG 0.461911 1.2:+6568591 MS.gene071733:CDS
TGGCTTCAGTGTTGTTCAGT+TGG 0.463762 1.2:+6568582 MS.gene071733:CDS
CATGTTGGAGCTGGTGAAAA+GGG 0.469294 1.2:+6568732 MS.gene071733:CDS
TTCATAGCATAACTTTGTAA+AGG 0.471242 1.2:-6568964 None:intergenic
TCTAACAATTCTATCATCCT+CGG 0.485473 1.2:-6568061 None:intergenic
CTAACAATTCTATCATCCTC+GGG 0.487896 1.2:-6568060 None:intergenic
AAAGAAATACCTATTGGGTA+AGG 0.489202 1.2:-6568129 None:intergenic
CTATAATGACCAACCATTCA+GGG 0.494929 1.2:+6568536 MS.gene071733:CDS
AAATGCTGATGTGGAGTTTG+TGG 0.495412 1.2:+6568771 MS.gene071733:CDS
AATAATGAGACAAGCGCAGC+CGG 0.495702 1.2:+6568810 MS.gene071733:CDS
AAGATGATGGATCGATGAAA+CGG 0.496428 1.2:-6567866 None:intergenic
TCTCTCCAATTCCAATCCTC+AGG 0.502146 1.2:+6567941 MS.gene071733:CDS
GAGCTATGGCAAGGTCTTGG+AGG 0.504579 1.2:+6568873 MS.gene071733:CDS
AGAGAAAGGAACCTGAGGAT+TGG 0.510071 1.2:-6567952 None:intergenic
AGAGAGAAGCGAGGGACTGA+AGG 0.513107 1.2:-6567899 None:intergenic
AGATGATGGATCGATGAAAC+GGG 0.514429 1.2:-6567865 None:intergenic
TGTGGAGTTTGTGGATGCAT+TGG 0.518144 1.2:+6568780 MS.gene071733:CDS
TTACAAAGTTATGCTATGAA+AGG 0.522292 1.2:+6568967 MS.gene071733:CDS
TGCTTGGCTTTCAAGAGGGA+AGG 0.527662 1.2:+6568674 MS.gene071733:CDS
TTGTCTGTTGTCATGAGCTA+TGG 0.536953 1.2:+6568859 MS.gene071733:CDS
CAAGTTGCTTGGCTTTCAAG+AGG 0.538504 1.2:+6568669 MS.gene071733:CDS
TGCAATTGAGCAATTAACAT+TGG 0.540100 1.2:-6569376 None:intergenic
ATCTCACAATACCAGCAGAT+AGG 0.541333 1.2:+6569890 MS.gene071733:CDS
TCTTGGAGGATGATGAGTCC+AGG 0.545029 1.2:+6568887 MS.gene071733:CDS
GAGTTTGTGGATGCATTGGT+TGG 0.545828 1.2:+6568784 MS.gene071733:CDS
TATAGAATCAGCGATCGGCT+TGG 0.548173 1.2:-6567828 None:intergenic
TTTCACCAGCTCCAACATGA+AGG 0.553634 1.2:-6568728 None:intergenic
AGATTTCAACCCTGAATGGT+TGG 0.554007 1.2:-6568545 None:intergenic
CAAAGTTATGCTATGAAAGG+AGG 0.560618 1.2:+6568970 MS.gene071733:CDS
GTCAAAGAAGGTTGACGAGA+AGG 0.562699 1.2:+6568918 MS.gene071733:CDS
TCGTGCAAGAACCTATCTGC+TGG 0.575055 1.2:-6569901 None:intergenic
AATTACCTCACATCCTTGCG+AGG 0.575548 1.2:-6568997 None:intergenic
CGAGAACCAACATCAGATCC+CGG 0.576985 1.2:-6568829 None:intergenic
TTTCTTGTTATGCAGAATGG+TGG 0.581399 1.2:+6569865 MS.gene071733:intron
AGGTTTGTGTGAGAAGATGA+TGG 0.586742 1.2:-6567879 None:intergenic
GCGCAGCCGGGATCTGATGT+TGG 0.589297 1.2:+6568823 MS.gene071733:CDS
AACCTCCATGAAATCTTGGA+AGG 0.591474 1.2:-6569437 None:intergenic
TCGCTGATTCTATACGGCGA+TGG 0.591978 1.2:+6567837 MS.gene071733:CDS
GCAGGAAGAGAGAGAAGCGA+GGG 0.592568 1.2:-6567907 None:intergenic
GGAGAGAGTTAAGAAAGCGC+AGG 0.593526 1.2:-6567925 None:intergenic
ATCACAAGACACTGATATTG+TGG 0.596048 1.2:+6568633 MS.gene071733:CDS
CGCAGGAAGAGAGAGAAGCG+AGG 0.597385 1.2:-6567908 None:intergenic
AAGTTGCTTGGCTTTCAAGA+GGG 0.602082 1.2:+6568670 MS.gene071733:CDS
GCAACATGCTGTGACTCGCA+AGG 0.610197 1.2:+6569396 MS.gene071733:CDS
GAAAGGAGGAGTTCCTCGCA+AGG 0.612920 1.2:+6568984 MS.gene071733:CDS
GAGCAATTAACATTGGCGAA+TGG 0.619596 1.2:-6569369 None:intergenic
CGCCGTATAGAATCAGCGAT+CGG 0.624581 1.2:-6567833 None:intergenic
GAGTTCCTCGCAAGGATGTG+AGG 0.625381 1.2:+6568992 MS.gene071733:CDS
TGTTGTCATGAGCTATGGCA+AGG 0.631696 1.2:+6568864 MS.gene071733:CDS
ATAATGAGACAAGCGCAGCC+GGG 0.641773 1.2:+6568811 MS.gene071733:CDS
TAGTGAACAAAATGCTGATG+TGG 0.648802 1.2:+6568762 MS.gene071733:CDS
GAGCTGGTGAAAAGGGACAA+TGG 0.664591 1.2:+6568739 MS.gene071733:CDS
TTCCTTCCAAGATTTCATGG+AGG 0.669194 1.2:+6569435 MS.gene071733:CDS
CTCGCAAGGATAATGTACAG+AGG 0.741638 1.2:+6569410 MS.gene071733:CDS
ACTTTGTAAAGGATACAGTG+TGG 0.743894 1.2:-6568953 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAAGAAATACCTATT+GGG - chr1.2:6568137-6568156 None:intergenic 15.0%
!!! TTTAGTTTTAAAGATTAATG+AGG + chr1.2:6569757-6569776 MS.gene071733:intron 15.0%
!! AATTGATTAAGAAAGAAATG+TGG - chr1.2:6567997-6568016 None:intergenic 20.0%
!! ATATGACAATAATCAATTGT+TGG + chr1.2:6568256-6568275 MS.gene071733:intron 20.0%
!! ATTGATTAAGAAAGAAATGT+GGG - chr1.2:6567996-6568015 None:intergenic 20.0%
!! GATATAAAAGAAATACCTAT+TGG - chr1.2:6568138-6568157 None:intergenic 20.0%
!! TAAGAAAAAGATACAGAATA+GGG - chr1.2:6569544-6569563 None:intergenic 20.0%
!! TTAAGAAAAAGATACAGAAT+AGG - chr1.2:6569545-6569564 None:intergenic 20.0%
!!! ATTTTCTTGATGATTTTGAT+TGG - chr1.2:6568214-6568233 None:intergenic 20.0%
!!! TTTTTAATATTCACCAAACA+TGG - chr1.2:6569083-6569102 None:intergenic 20.0%
! ACAATAATCAATTGTTGGAT+TGG + chr1.2:6568261-6568280 MS.gene071733:intron 25.0%
! ATCAATTGTATGTGGTATAT+TGG - chr1.2:6569644-6569663 None:intergenic 25.0%
! ATCCAAAAAGAAATAAAGCA+AGG - chr1.2:6569310-6569329 None:intergenic 25.0%
! ATTAAAAAGAGAAGAGAGAA+AGG - chr1.2:6567969-6567988 None:intergenic 25.0%
! TTACAAAGTTATGCTATGAA+AGG + chr1.2:6568967-6568986 MS.gene071733:CDS 25.0%
! TTCATAGCATAACTTTGTAA+AGG - chr1.2:6568967-6568986 None:intergenic 25.0%
! TTGGTCAATAATTTGGAAAT+AGG - chr1.2:6569596-6569615 None:intergenic 25.0%
! TTTGGTAGATAGGTTATAAT+GGG + chr1.2:6569030-6569049 MS.gene071733:intron 25.0%
!! AAATCTTTTAGTACCAAACT+TGG + chr1.2:6568562-6568581 MS.gene071733:CDS 25.0%
!! TTTTGGTAGATAGGTTATAA+TGG + chr1.2:6569029-6569048 MS.gene071733:intron 25.0%
!!! AAAACGAAGAAGTATTTTAC+AGG + chr1.2:6568368-6568387 MS.gene071733:intron 25.0%
!!! AAACGAAGAAGTATTTTACA+GGG + chr1.2:6568369-6568388 MS.gene071733:intron 25.0%
!!! ATCCTTGCTTTATTTCTTTT+TGG + chr1.2:6569305-6569324 MS.gene071733:intron 25.0%
AAAGAAATACCTATTGGGTA+AGG - chr1.2:6568132-6568151 None:intergenic 30.0%
AGATGATTGAAAAAACTGAG+TGG + chr1.2:6569128-6569147 MS.gene071733:intron 30.0%
ATATTCACCAAACATGGAAA+CGG - chr1.2:6569077-6569096 None:intergenic 30.0%
ATGGGATAAAACTGAACATA+TGG + chr1.2:6569048-6569067 MS.gene071733:intron 30.0%
CATCTTGTTGGTCAATAATT+TGG - chr1.2:6569603-6569622 None:intergenic 30.0%
CATTAATTGCACTTTGTGTT+TGG - chr1.2:6569271-6569290 None:intergenic 30.0%
CATTCCCATAAACCTATATT+CGG - chr1.2:6568509-6568528 None:intergenic 30.0%
CATTCTGCATAACAAGAAAA+AGG - chr1.2:6569864-6569883 None:intergenic 30.0%
CTTACAGAATCAATTGTATG+TGG - chr1.2:6569652-6569671 None:intergenic 30.0%
GAAGGAAAACAAGATCAAAT+TGG - chr1.2:6568713-6568732 None:intergenic 30.0%
TAAAAGATTTCAACCCTGAA+TGG - chr1.2:6568552-6568571 None:intergenic 30.0%
TCTAACAATTCTATCATCCT+CGG - chr1.2:6568064-6568083 None:intergenic 30.0%
TGCAATTGAGCAATTAACAT+TGG - chr1.2:6569379-6569398 None:intergenic 30.0%
TTACAGGGTTAAAGTGTAAT+GGG + chr1.2:6568384-6568403 MS.gene071733:intron 30.0%
TTCTCCGAATATAGGTTTAT+GGG + chr1.2:6568502-6568521 MS.gene071733:intron 30.0%
TTTACAGGGTTAAAGTGTAA+TGG + chr1.2:6568383-6568402 MS.gene071733:intron 30.0%
TTTCTCCGAATATAGGTTTA+TGG + chr1.2:6568501-6568520 MS.gene071733:intron 30.0%
TTTGATTCCACTGAAAATGT+GGG + chr1.2:6569156-6569175 MS.gene071733:intron 30.0%
! ACACAGGTATATGTTTTCTT+TGG - chr1.2:6569184-6569203 None:intergenic 30.0%
! ACATTTTCAGTGGAATCAAA+AGG - chr1.2:6569156-6569175 None:intergenic 30.0%
! AGGTTTGTTCATCATGAATT+TGG - chr1.2:6568112-6568131 None:intergenic 30.0%
! CACAGGTATATGTTTTCTTT+GGG - chr1.2:6569183-6569202 None:intergenic 30.0%
! TGTTGTGTATCAAACACTTT+TGG + chr1.2:6569201-6569220 MS.gene071733:intron 30.0%
! TTATTGTAAGGCATCATTGT+TGG + chr1.2:6569681-6569700 MS.gene071733:intron 30.0%
!! CTTTTTCTTGTTATGCAGAA+TGG + chr1.2:6569862-6569881 MS.gene071733:intron 30.0%
!! TACTTCTTCGTTTTTAAACG+AGG - chr1.2:6568362-6568381 None:intergenic 30.0%
!! TTTTGATTCCACTGAAAATG+TGG + chr1.2:6569155-6569174 MS.gene071733:intron 30.0%
!!! AGGTAATTTAAGCTAGCTTT+TGG + chr1.2:6569012-6569031 MS.gene071733:intron 30.0%
!!! TGATGATTTTGATTGGATGA+CGG - chr1.2:6568207-6568226 None:intergenic 30.0%
!!! TGTAATGGGTACGATATTTT+AGG + chr1.2:6568398-6568417 MS.gene071733:intron 30.0%
AAAGGAAACATGTAAAGCGA+AGG - chr1.2:6569846-6569865 None:intergenic 35.0%
AACAAACCTCCATGAAATCT+TGG - chr1.2:6569444-6569463 None:intergenic 35.0%
AAGCGTTTGCAGTTATTGTA+AGG + chr1.2:6569669-6569688 MS.gene071733:intron 35.0%
AAGTGTTTGATACACAACAC+AGG - chr1.2:6569200-6569219 None:intergenic 35.0%
ACTCTTGTCTGAGTTACTAT+TGG + chr1.2:6568321-6568340 MS.gene071733:intron 35.0%
ACTTAACAAGCCAAACACTA+GGG - chr1.2:6569793-6569812 None:intergenic 35.0%
ACTTTGTAAAGGATACAGTG+TGG - chr1.2:6568956-6568975 None:intergenic 35.0%
ATCACAAGACACTGATATTG+TGG + chr1.2:6568633-6568652 MS.gene071733:CDS 35.0%
ATGAACAAACCTTACCCAAT+AGG + chr1.2:6568120-6568139 MS.gene071733:CDS 35.0%
ATGTGGAAAGCTCCAAAATA+TGG + chr1.2:6569937-6569956 MS.gene071733:CDS 35.0%
CAAAGTTATGCTATGAAAGG+AGG + chr1.2:6568970-6568989 MS.gene071733:CDS 35.0%
CTAACAATTCTATCATCCTC+GGG - chr1.2:6568063-6568082 None:intergenic 35.0%
CTATAATGACCAACCATTCA+GGG + chr1.2:6568536-6568555 MS.gene071733:CDS 35.0%
CTTAGAATTTCCCTAGTGTT+TGG + chr1.2:6569780-6569799 MS.gene071733:intron 35.0%
GCGAAGGAATAATACAGTAA+TGG - chr1.2:6569830-6569849 None:intergenic 35.0%
TAGTGAACAAAATGCTGATG+TGG + chr1.2:6568762-6568781 MS.gene071733:CDS 35.0%
! GCATTCTTTTCTCCGAATAT+AGG + chr1.2:6568494-6568513 MS.gene071733:intron 35.0%
! GGAAATAGGTTTAAAGCGAA+TGG - chr1.2:6569582-6569601 None:intergenic 35.0%
! GTTTTCCTTCCAAGATTTCA+TGG + chr1.2:6569432-6569451 MS.gene071733:CDS 35.0%
! TTTCTTGTTATGCAGAATGG+TGG + chr1.2:6569865-6569884 MS.gene071733:intron 35.0%
!! AAGATGATGGATCGATGAAA+CGG - chr1.2:6567869-6567888 None:intergenic 35.0%
!! TCTTCGTTTTTAAACGAGGA+GGG - chr1.2:6568358-6568377 None:intergenic 35.0%
!! TTCTTCGTTTTTAAACGAGG+AGG - chr1.2:6568359-6568378 None:intergenic 35.0%
!! TTTGATTTTTGCTTTGCTGC+AGG + chr1.2:6569505-6569524 MS.gene071733:intron 35.0%
!!! ACGAGATAGCTTTTAAGATG+TGG + chr1.2:6569920-6569939 MS.gene071733:CDS 35.0%
!!! GATCTTGTTTTCCTTCATGT+TGG + chr1.2:6568717-6568736 MS.gene071733:CDS 35.0%
!!! TAAGCTAGCTTTTGGTAGAT+AGG + chr1.2:6569020-6569039 MS.gene071733:intron 35.0%
AAATGCTGATGTGGAGTTTG+TGG + chr1.2:6568771-6568790 MS.gene071733:CDS 40.0%
AACAACACTGAAGCCAAGTT+TGG - chr1.2:6568578-6568597 None:intergenic 40.0%
AACCTCCATGAAATCTTGGA+AGG - chr1.2:6569440-6569459 None:intergenic 40.0%
AGATTTCAACCCTGAATGGT+TGG - chr1.2:6568548-6568567 None:intergenic 40.0%
AGGTTTGTGTGAGAAGATGA+TGG - chr1.2:6567882-6567901 None:intergenic 40.0%
ATCTCACAATACCAGCAGAT+AGG + chr1.2:6569890-6569909 MS.gene071733:CDS 40.0%
ATGGTTTCCGTTTCCATGTT+TGG + chr1.2:6569067-6569086 MS.gene071733:intron 40.0%
CACTTAACAAGCCAAACACT+AGG - chr1.2:6569794-6569813 None:intergenic 40.0%
CTTCTTTGACACTGAAAACC+TGG - chr1.2:6568908-6568927 None:intergenic 40.0%
GAGCAATTAACATTGGCGAA+TGG - chr1.2:6569372-6569391 None:intergenic 40.0%
GCTATAATGACCAACCATTC+AGG + chr1.2:6568535-6568554 MS.gene071733:CDS 40.0%
TGTTGTTCAGTTGGATGAGT+TGG + chr1.2:6568591-6568610 MS.gene071733:CDS 40.0%
TTCCTTCCAAGATTTCATGG+AGG + chr1.2:6569435-6569454 MS.gene071733:CDS 40.0%
TTGTCTGTTGTCATGAGCTA+TGG + chr1.2:6568859-6568878 MS.gene071733:CDS 40.0%
! AAGTTGCTTGGCTTTCAAGA+GGG + chr1.2:6568670-6568689 MS.gene071733:CDS 40.0%
! ATGTAGTTTTCAGAAACCCG+AGG + chr1.2:6568044-6568063 MS.gene071733:intron 40.0%
! CAGGTTTTCAGTGTCAAAGA+AGG + chr1.2:6568906-6568925 MS.gene071733:CDS 40.0%
! GTTGAGATTCTCAAGTTGCT+TGG + chr1.2:6568658-6568677 MS.gene071733:CDS 40.0%
!! AGATGATGGATCGATGAAAC+GGG - chr1.2:6567868-6567887 None:intergenic 40.0%
AATAATGAGACAAGCGCAGC+CGG + chr1.2:6568810-6568829 MS.gene071733:CDS 45.0%
AATTACCTCACATCCTTGCG+AGG - chr1.2:6569000-6569019 None:intergenic 45.0%
ACCTCCATACCAAATGATGC+AGG + chr1.2:6569344-6569363 MS.gene071733:intron 45.0%
AGAAGAGAGAAAGGAACCTG+AGG - chr1.2:6567960-6567979 None:intergenic 45.0%
AGAGAAAGGAACCTGAGGAT+TGG - chr1.2:6567955-6567974 None:intergenic 45.0%
AGGAACCTGAGGATTGGAAT+TGG - chr1.2:6567949-6567968 None:intergenic 45.0%
CAACAAGATGTGTGCTTGAG+TGG + chr1.2:6569613-6569632 MS.gene071733:intron 45.0%
CACTCAAGCACACATCTTGT+TGG - chr1.2:6569615-6569634 None:intergenic 45.0%
CAGAATAGGGCCTCGTAATA+AGG - chr1.2:6569531-6569550 None:intergenic 45.0%
CATGTTGGAGCTGGTGAAAA+GGG + chr1.2:6568732-6568751 MS.gene071733:CDS 45.0%
CTCGCAAGGATAATGTACAG+AGG + chr1.2:6569410-6569429 MS.gene071733:CDS 45.0%
GTCAAAGAAGGTTGACGAGA+AGG + chr1.2:6568918-6568937 MS.gene071733:CDS 45.0%
TATAGAATCAGCGATCGGCT+TGG - chr1.2:6567831-6567850 None:intergenic 45.0%
TCATGTTGGAGCTGGTGAAA+AGG + chr1.2:6568731-6568750 MS.gene071733:CDS 45.0%
TCTCTCCAATTCCAATCCTC+AGG + chr1.2:6567941-6567960 MS.gene071733:CDS 45.0%
TGTGGAGTTTGTGGATGCAT+TGG + chr1.2:6568780-6568799 MS.gene071733:CDS 45.0%
TGTTGTCATGAGCTATGGCA+AGG + chr1.2:6568864-6568883 MS.gene071733:CDS 45.0%
TTTCACCAGCTCCAACATGA+AGG - chr1.2:6568731-6568750 None:intergenic 45.0%
! CAAGTTGCTTGGCTTTCAAG+AGG + chr1.2:6568669-6568688 MS.gene071733:CDS 45.0%
! GAGTTTGTGGATGCATTGGT+TGG + chr1.2:6568784-6568803 MS.gene071733:CDS 45.0%
! GCTTTCAAGAGGGAAGGTTT+TGG + chr1.2:6568680-6568699 MS.gene071733:CDS 45.0%
! GTTTTCCTTCATGTTGGAGC+TGG + chr1.2:6568723-6568742 MS.gene071733:CDS 45.0%
! TGGCTTCAGTGTTGTTCAGT+TGG + chr1.2:6568582-6568601 MS.gene071733:CDS 45.0%
! TTTGGGTCCCACATTTTCAG+TGG - chr1.2:6569166-6569185 None:intergenic 45.0%
!! AGCCGATCGCTGATTCTATA+CGG + chr1.2:6567831-6567850 MS.gene071733:CDS 45.0%
ATAATGAGACAAGCGCAGCC+GGG + chr1.2:6568811-6568830 MS.gene071733:CDS 50.0%
CATGAGCTATGGCAAGGTCT+TGG + chr1.2:6568870-6568889 MS.gene071733:CDS 50.0%
CGAATGGTGCCTGCATCATT+TGG - chr1.2:6569356-6569375 None:intergenic 50.0%
CGAGAACCAACATCAGATCC+CGG - chr1.2:6568832-6568851 None:intergenic 50.0%
CGCCGTATAGAATCAGCGAT+CGG - chr1.2:6567836-6567855 None:intergenic 50.0%
GAGCTGGTGAAAAGGGACAA+TGG + chr1.2:6568739-6568758 MS.gene071733:CDS 50.0%
GCCTGCATCATTTGGTATGG+AGG - chr1.2:6569348-6569367 None:intergenic 50.0%
GGTGCCTGCATCATTTGGTA+TGG - chr1.2:6569351-6569370 None:intergenic 50.0%
TCGTGCAAGAACCTATCTGC+TGG - chr1.2:6569904-6569923 None:intergenic 50.0%
TCTTGGAGGATGATGAGTCC+AGG + chr1.2:6568887-6568906 MS.gene071733:CDS 50.0%
! GGAGAGAGTTAAGAAAGCGC+AGG - chr1.2:6567928-6567947 None:intergenic 50.0%
! TGCTTGGCTTTCAAGAGGGA+AGG + chr1.2:6568674-6568693 MS.gene071733:CDS 50.0%
!! TCGCTGATTCTATACGGCGA+TGG + chr1.2:6567837-6567856 MS.gene071733:CDS 50.0%
!! TTGCTGCAGGCCTTATTACG+AGG + chr1.2:6569518-6569537 MS.gene071733:intron 50.0%
AGAGAGAAGCGAGGGACTGA+AGG - chr1.2:6567902-6567921 None:intergenic 55.0%
GAAAGGAGGAGTTCCTCGCA+AGG + chr1.2:6568984-6569003 MS.gene071733:CDS 55.0%
GAGCTATGGCAAGGTCTTGG+AGG + chr1.2:6568873-6568892 MS.gene071733:CDS 55.0%
GAGTTCCTCGCAAGGATGTG+AGG + chr1.2:6568992-6569011 MS.gene071733:CDS 55.0%
GCAACATGCTGTGACTCGCA+AGG + chr1.2:6569396-6569415 MS.gene071733:CDS 55.0%
GCAGGAAGAGAGAGAAGCGA+GGG - chr1.2:6567910-6567929 None:intergenic 55.0%
! CACTTTTGGCGTGACTCGCA+AGG + chr1.2:6569215-6569234 MS.gene071733:intron 55.0%
CGCAGGAAGAGAGAGAAGCG+AGG - chr1.2:6567911-6567930 None:intergenic 60.0%
GCGCAGCCGGGATCTGATGT+TGG + chr1.2:6568823-6568842 MS.gene071733:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 6567816 6569966 6567816 ID=MS.gene071733
chr1.2 mRNA 6567816 6569966 6567816 ID=MS.gene071733.t1;Parent=MS.gene071733
chr1.2 exon 6567816 6567962 6567816 ID=MS.gene071733.t1.exon1;Parent=MS.gene071733.t1
chr1.2 CDS 6567816 6567962 6567816 ID=cds.MS.gene071733.t1;Parent=MS.gene071733.t1
chr1.2 exon 6568057 6568175 6568057 ID=MS.gene071733.t1.exon2;Parent=MS.gene071733.t1
chr1.2 CDS 6568057 6568175 6568057 ID=cds.MS.gene071733.t1;Parent=MS.gene071733.t1
chr1.2 exon 6568516 6569013 6568516 ID=MS.gene071733.t1.exon3;Parent=MS.gene071733.t1
chr1.2 CDS 6568516 6569013 6568516 ID=cds.MS.gene071733.t1;Parent=MS.gene071733.t1
chr1.2 exon 6569366 6569456 6569366 ID=MS.gene071733.t1.exon4;Parent=MS.gene071733.t1
chr1.2 CDS 6569366 6569456 6569366 ID=cds.MS.gene071733.t1;Parent=MS.gene071733.t1
chr1.2 exon 6569880 6569966 6569880 ID=MS.gene071733.t1.exon5;Parent=MS.gene071733.t1
chr1.2 CDS 6569880 6569966 6569880 ID=cds.MS.gene071733.t1;Parent=MS.gene071733.t1
Gene Sequence

>MS.gene071733

ATGGCAGACAAACCAAGCCGATCGCTGATTCTATACGGCGATGGCTTAGCCCGTTTCATCGATCCATCATCTTCTCACACAAACCTTCAGTCCCTCGCTTCTCTCTCTTCCTGCGCTTTCTTAACTCTCTCCAATTCCAATCCTCAGGTTCCTTTCTCTCTTCTCTTTTTAATCTAACCCACATTTCTTTCTTAATCAATTACTTGTTTTCTTAATTCACTTGATTTTATGTAGTTTTCAGAAACCCGAGGATGATAGAATTGTTAGAGAATTCGCATTGCTTCTTGATGCATCCAAATTCATGATGAACAAACCTTACCCAATAGGTATTTCTTTTATATCATTCATTTTTTTCACAATGTTATTAGCTGATGTAAATAGTTTTACACCGTCATCCAATCAAAATCATCAAGAAAATTTTGTGTTAACTAAATTATATAATATGACAATAATCAATTGTTGGATTGGTGAAATTCGATATTTATAGCGAATTATTAAGCTATTAACTCTTGTCTGAGTTACTATTGGAGTAACTTGATCCCTCCTCGTTTAAAAACGAAGAAGTATTTTACAGGGTTAAAGTGTAATGGGTACGATATTTTAGGTACTAAAAACATTGTTTTTTTTCAGTTAGATTTGTTGCTGTTTTGTGAGATTACTGTGTCACATGAAACTTTTGCATTCTTTTCTCCGAATATAGGTTTATGGGAATGAAAGCTGCTATAATGACCAACCATTCAGGGTTGAAATCTTTTAGTACCAAACTTGGCTTCAGTGTTGTTCAGTTGGATGAGTTGGTGAAACAACATGCTTCTGAATCACAAGACACTGATATTGTGGCTGTTGAGATTCTCAAGTTGCTTGGCTTTCAAGAGGGAAGGTTTTGGACAATAGCCAATTTGATCTTGTTTTCCTTCATGTTGGAGCTGGTGAAAAGGGACAATGGTAGTGAACAAAATGCTGATGTGGAGTTTGTGGATGCATTGGTTGGTGCAATAATGAGACAAGCGCAGCCGGGATCTGATGTTGGTTCTCGCATGCACTTGTCTGTTGTCATGAGCTATGGCAAGGTCTTGGAGGATGATGAGTCCAGGTTTTCAGTGTCAAAGAAGGTTGACGAGAAGGACTCTTGTTTTTCCACACTGTATCCTTTACAAAGTTATGCTATGAAAGGAGGAGTTCCTCGCAAGGATGTGAGGTAATTTAAGCTAGCTTTTGGTAGATAGGTTATAATGGGATAAAACTGAACATATGGTTTCCGTTTCCATGTTTGGTGAATATTAAAAAGTTTACTTTATAGATAGATCATGAGAGATGATTGAAAAAACTGAGTGGTTCCTTTTGATTCCACTGAAAATGTGGGACCCAAAGAAAACATATACCTGTGTTGTGTATCAAACACTTTTGGCGTGACTCGCAAGGATATGTTCAGTATTTTCTAATTGTTGTGTACCAAACACAAAGTGCAATTAATGATATCGCTATCATAATCCTTGCTTTATTTCTTTTTGGATTGTCTTGCATATTTACCTCCATACCAAATGATGCAGGCACCATTCGCCAATGTTAATTGCTCAATTGCAACATGCTGTGACTCGCAAGGATAATGTACAGAGGTTTTCCTTCCAAGATTTCATGGAGGTTTGTTTGAATTTTACTCACAAGCTCATAGTTTATTACAAACAGTCTTTTGATTTTTGCTTTGCTGCAGGCCTTATTACGAGGCCCTATTCTGTATCTTTTTCTTAATGTTTGTTCTTTGTCCATTCGCTTTAAACCTATTTCCAAATTATTGACCAACAAGATGTGTGCTTGAGTGGTTATGCCAATATACCACATACAATTGATTCTGTAAGCGTTTGCAGTTATTGTAAGGCATCATTGTTGGAACATAAGTATGCTAGCAAGTCAATTACTGATGCTATCTATGATATCATTACTTTTAGTTTTAAAGATTAATGAGGCTTAGAATTTCCCTAGTGTTTGGCTTGTTAAGTGACATTGTAATGATCCATTACTGTATTATTCCTTCGCTTTACATGTTTCCTTTTTCTTGTTATGCAGAATGGTGGAAATCTCACAATACCAGCAGATAGGTTCTTGCACGAGATAGCTTTTAAGATGTGGAAAGCTCCAAAATATGGAGCTTGA
Protein sequence

>MS.gene071733.t1

MADKPSRSLILYGDGLARFIDPSSSHTNLQSLASLSSCAFLTLSNSNPQKPEDDRIVREFALLLDASKFMMNKPYPIGISFISFIFFTMFMGMKAAIMTNHSGLKSFSTKLGFSVVQLDELVKQHASESQDTDIVAVEILKLLGFQEGRFWTIANLILFSFMLELVKRDNGSEQNADVEFVDALVGAIMRQAQPGSDVGSRMHLSVVMSYGKVLEDDESRFSVSKKVDEKDSCFSTLYPLQSYAMKGGVPRKDVRHHSPMLIAQLQHAVTRKDNVQRFSFQDFMENGGNLTIPADRFLHEIAFKMWKAPKYGA