Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071788.t1 | XP_003603557.1 | 95.7 | 323 | 13 | 1 | 1 | 323 | 3 | 324 | 3.20E-153 | 551.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071788.t1 | Q94B65 | 78.4 | 324 | 66 | 3 | 1 | 323 | 3 | 323 | 8.3e-126 | 451.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071788.t1 | G7J2T9 | 95.7 | 323 | 13 | 1 | 1 | 323 | 3 | 324 | 2.3e-153 | 551.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071788 | MS.gene032018 | PPI |
| MS.gene69267 | MS.gene071788 | PPI |
| MS.gene008096 | MS.gene071788 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071788.t1 | MTR_3g109070 | 95.666 | 323 | 13 | 1 | 1 | 323 | 3 | 324 | 0.0 | 606 |
| MS.gene071788.t1 | MTR_3g109070 | 94.796 | 269 | 13 | 1 | 1 | 269 | 3 | 270 | 3.42e-178 | 493 |
| MS.gene071788.t1 | MTR_3g109070 | 93.665 | 221 | 13 | 1 | 1 | 221 | 3 | 222 | 5.45e-143 | 404 |
| MS.gene071788.t1 | MTR_2g085160 | 28.511 | 235 | 166 | 1 | 71 | 305 | 37 | 269 | 2.83e-24 | 100 |
| MS.gene071788.t1 | MTR_2g085160 | 28.522 | 291 | 190 | 6 | 31 | 305 | 40 | 328 | 4.11e-24 | 100 |
| MS.gene071788.t1 | MTR_5g091610 | 86.000 | 50 | 7 | 0 | 221 | 270 | 192 | 241 | 1.69e-18 | 84.0 |
| MS.gene071788.t1 | MTR_1g012590 | 29.565 | 230 | 146 | 5 | 16 | 231 | 41 | 268 | 3.91e-18 | 83.2 |
| MS.gene071788.t1 | MTR_1g012590 | 29.412 | 221 | 136 | 5 | 16 | 216 | 41 | 261 | 1.34e-17 | 81.6 |
| MS.gene071788.t1 | MTR_3g463360 | 25.000 | 264 | 182 | 6 | 14 | 266 | 103 | 361 | 2.77e-12 | 67.4 |
| MS.gene071788.t1 | MTR_4g113270 | 28.235 | 255 | 170 | 6 | 18 | 264 | 18 | 267 | 2.56e-11 | 64.3 |
| MS.gene071788.t1 | MTR_4g113270 | 28.235 | 255 | 170 | 6 | 18 | 264 | 18 | 267 | 3.24e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071788.t1 | AT4G31600 | 78.086 | 324 | 67 | 3 | 1 | 323 | 3 | 323 | 3.53e-180 | 501 |
| MS.gene071788.t1 | AT4G31600 | 76.106 | 226 | 50 | 3 | 1 | 225 | 3 | 225 | 1.58e-112 | 328 |
| MS.gene071788.t1 | AT4G32272 | 30.233 | 301 | 195 | 6 | 16 | 303 | 42 | 340 | 6.34e-32 | 122 |
| MS.gene071788.t1 | AT2G14695 | 28.840 | 319 | 209 | 6 | 2 | 305 | 29 | 344 | 7.52e-32 | 122 |
| MS.gene071788.t1 | AT4G32272 | 29.932 | 294 | 191 | 6 | 23 | 303 | 64 | 355 | 2.51e-30 | 118 |
Find 0 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTTTTTTTTAAGT+AGG | + | 24227:914-933 | MS.gene071788:intron | 10.0% |
| !! | AATAATACAGATAAAGAATA+TGG | - | 24227:2210-2229 | MS.gene071788:intergenic | 15.0% |
| !! | ATAATAAGAAACATCAAAAA+CGG | - | 24227:2171-2190 | MS.gene071788:intergenic | 15.0% |
| !! | ATAATACAGATAAAGAATAT+GGG | - | 24227:2209-2228 | MS.gene071788:intergenic | 15.0% |
| !! | ATTATACAATATAGACAAAT+AGG | - | 24227:2862-2881 | MS.gene071788:intergenic | 15.0% |
| !!! | ACTTTTTTCTGATTATATTA+AGG | - | 24227:813-832 | MS.gene071788:intergenic | 15.0% |
| !!! | CAGAAAAAAGTATATATATT+TGG | + | 24227:822-841 | MS.gene071788:intron | 15.0% |
| !!! | TTATTTTGAGTGAAAAAAAT+AGG | - | 24227:2621-2640 | MS.gene071788:intergenic | 15.0% |
| !!! | TTTTAAGTAGGTTTAAATAA+GGG | + | 24227:926-945 | MS.gene071788:intron | 15.0% |
| !!! | TTTTTAAGTAGGTTTAAATA+AGG | + | 24227:925-944 | MS.gene071788:intron | 15.0% |
| !!! | TTTTTATCTTAATGAATTTC+TGG | + | 24227:1708-1727 | MS.gene071788:intron | 15.0% |
| !! | AAATACAAACAAAAGATGAA+TGG | - | 24227:3400-3419 | MS.gene071788:intergenic | 20.0% |
| !! | AAATGTAATGTTTGTTTGAT+TGG | + | 24227:1589-1608 | MS.gene071788:intron | 20.0% |
| !! | AATCTTGTTGAAAGAAAAAT+AGG | + | 24227:2722-2741 | MS.gene071788:intron | 20.0% |
| !! | AATGTAATGTTTGTTTGATT+GGG | + | 24227:1590-1609 | MS.gene071788:intron | 20.0% |
| !! | ATCTTGTTGAAAGAAAAATA+GGG | + | 24227:2723-2742 | MS.gene071788:intron | 20.0% |
| !! | GGAAAAACATACTTATATTT+AGG | + | 24227:713-732 | MS.gene071788:intron | 20.0% |
| !! | TTCCCTAAAAAAAAAGAAAA+AGG | - | 24227:697-716 | MS.gene071788:intergenic | 20.0% |
| !! | TTTATCTGTATTATTTGCAA+AGG | + | 24227:2215-2234 | MS.gene071788:CDS | 20.0% |
| !!! | AGACCTTTTTCTTTTTTTTT+AGG | + | 24227:691-710 | MS.gene071788:intron | 20.0% |
| !!! | ATTTTGATCTACTTACTATT+AGG | + | 24227:2447-2466 | MS.gene071788:intron | 20.0% |
| !!! | GACCTTTTTCTTTTTTTTTA+GGG | + | 24227:692-711 | MS.gene071788:intron | 20.0% |
| !!! | TAAATATAAGCATTTTGGAA+AGG | - | 24227:749-768 | MS.gene071788:intergenic | 20.0% |
| !!! | TCAGTTCTAAATTATATCAT+TGG | + | 24227:2938-2957 | MS.gene071788:intron | 20.0% |
| !!! | TTTTCTGATTATATTAAGGT+AGG | - | 24227:809-828 | MS.gene071788:intergenic | 20.0% |
| !!! | TTTTTTGTTTGTTAATGTCA+AGG | + | 24227:1275-1294 | MS.gene071788:intron | 20.0% |
| ! | AAGCACAAAACATTTAGTAT+AGG | - | 24227:2478-2497 | MS.gene071788:intergenic | 25.0% |
| ! | AGAACCTAATATTGATACAT+AGG | + | 24227:3368-3387 | MS.gene071788:intron | 25.0% |
| ! | AGCACAAAACATTTAGTATA+GGG | - | 24227:2477-2496 | MS.gene071788:intergenic | 25.0% |
| ! | AGTGTAAACTCTACTAAAAT+TGG | - | 24227:1810-1829 | MS.gene071788:intergenic | 25.0% |
| ! | ATGTAAGTGTAAACATGATT+TGG | - | 24227:849-868 | MS.gene071788:intergenic | 25.0% |
| ! | CATTATAGAAAAATGAAACC+GGG | - | 24227:1099-1118 | MS.gene071788:intergenic | 25.0% |
| ! | GCATTATAGAAAAATGAAAC+CGG | - | 24227:1100-1119 | MS.gene071788:intergenic | 25.0% |
| ! | GTATCTATTACTCCATTTAA+AGG | - | 24227:2010-2029 | MS.gene071788:intergenic | 25.0% |
| ! | TATGCCTATGTATCAATATT+AGG | - | 24227:3375-3394 | MS.gene071788:intergenic | 25.0% |
| ! | TCTTTATGGCAATATACATT+GGG | - | 24227:1165-1184 | MS.gene071788:intergenic | 25.0% |
| ! | TTACTCCATTTAAAGGATTA+TGG | - | 24227:2003-2022 | MS.gene071788:intergenic | 25.0% |
| ! | TTGAAAGAAAAATAGGGAAA+GGG | + | 24227:2729-2748 | MS.gene071788:intron | 25.0% |
| ! | TTGAATGAAGAAAGAATTGA+AGG | - | 24227:326-345 | MS.gene071788:intergenic | 25.0% |
| !! | AATCTACTTCATTTTCTTCA+AGG | + | 24227:293-312 | MS.gene071788:CDS | 25.0% |
| !! | ATTTTTCCTTTGACCTTTTT+GGG | + | 24227:1921-1940 | MS.gene071788:CDS | 25.0% |
| !! | CAATTTTCAGAATCCATTTT+GGG | - | 24227:1527-1546 | MS.gene071788:intergenic | 25.0% |
| !! | TACTTTTCATGCTTATGTTT+AGG | + | 24227:870-889 | MS.gene071788:intron | 25.0% |
| !! | TCAATTTTCAGAATCCATTT+TGG | - | 24227:1528-1547 | MS.gene071788:intergenic | 25.0% |
| !! | TTAATTTTGCCATGATAAGA+CGG | + | 24227:2815-2834 | MS.gene071788:intron | 25.0% |
| !! | TTGTATAAACTTTGTTGTGA+TGG | + | 24227:2996-3015 | MS.gene071788:intron | 25.0% |
| !!! | CTACAGTTGTATTTATTTTG+CGG | + | 24227:1761-1780 | MS.gene071788:intron | 25.0% |
| !!! | GAGTTATTCTTTTTCATTTC+TGG | + | 24227:3177-3196 | MS.gene071788:intron | 25.0% |
| !!! | TACAGTTGTATTTATTTTGC+GGG | + | 24227:1762-1781 | MS.gene071788:intron | 25.0% |
| !!! | TTTTGAGTGAAAAAAATAGG+TGG | - | 24227:2618-2637 | MS.gene071788:intergenic | 25.0% |
| AAAGAAACTGCTAAAAGTCT+TGG | + | 24227:2414-2433 | MS.gene071788:intron | 30.0% | |
| AAATGAAGTAGATTCTGCAT+CGG | - | 24227:287-306 | MS.gene071788:intergenic | 30.0% | |
| AAATGCCAACATTCAAAACA+TGG | - | 24227:2287-2306 | MS.gene071788:intergenic | 30.0% | |
| AAATGCTTATATTTACGAGC+AGG | + | 24227:754-773 | MS.gene071788:intron | 30.0% | |
| AATGCTTATATTTACGAGCA+GGG | + | 24227:755-774 | MS.gene071788:intron | 30.0% | |
| ACAAATAGGTGTTCAATTAC+TGG | - | 24227:2848-2867 | MS.gene071788:intergenic | 30.0% | |
| AGAAGAATAAGAAGAACCAT+TGG | + | 24227:1424-1443 | MS.gene071788:intron | 30.0% | |
| ATAAGAAGAACCATTGGTAA+CGG | + | 24227:1430-1449 | MS.gene071788:intron | 30.0% | |
| ATGTTGATGCAGTTTAATTG+CGG | + | 24227:386-405 | MS.gene071788:intron | 30.0% | |
| ATGTTTCTTATTATAGCCAC+AGG | + | 24227:2177-2196 | MS.gene071788:CDS | 30.0% | |
| CAAAATCTCTGATTAAACTG+TGG | + | 24227:1346-1365 | MS.gene071788:intron | 30.0% | |
| CAATGTATATTGCCATAAAG+AGG | + | 24227:1164-1183 | MS.gene071788:CDS | 30.0% | |
| CTCTTTATGGCAATATACAT+TGG | - | 24227:1166-1185 | MS.gene071788:intergenic | 30.0% | |
| CTTGGTTAATGTTATGAAGA+GGG | + | 24227:1455-1474 | MS.gene071788:intron | 30.0% | |
| GAAAAAAAGTAAGACAGTGA+AGG | + | 24227:3594-3613 | MS.gene071788:CDS | 30.0% | |
| GAGTTTACACTCAATAGAAA+TGG | + | 24227:1819-1838 | MS.gene071788:intron | 30.0% | |
| GCACAAAACATTTAGTATAG+GGG | - | 24227:2476-2495 | MS.gene071788:intergenic | 30.0% | |
| GTTGAAAGAAAAATAGGGAA+AGG | + | 24227:2728-2747 | MS.gene071788:intron | 30.0% | |
| GTTGTCCATAATCCTTTAAA+TGG | + | 24227:1995-2014 | MS.gene071788:intron | 30.0% | |
| TATACACTTTGGTCGAAAAT+GGG | + | 24227:1025-1044 | MS.gene071788:CDS | 30.0% | |
| TCGAAACATTATTCCCAAAA+TGG | + | 24227:1511-1530 | MS.gene071788:intron | 30.0% | |
| TCTAGTGACAGAAAATTCTA+TGG | - | 24227:3351-3370 | MS.gene071788:intergenic | 30.0% | |
| TCTGATTATATTAAGGTAGG+AGG | - | 24227:806-825 | MS.gene071788:intergenic | 30.0% | |
| TGTTTCTTATTATAGCCACA+GGG | + | 24227:2178-2197 | MS.gene071788:CDS | 30.0% | |
| TTATACACTTTGGTCGAAAA+TGG | + | 24227:1024-1043 | MS.gene071788:CDS | 30.0% | |
| TTCTGGTAGAATAGACATTA+TGG | + | 24227:1725-1744 | MS.gene071788:intron | 30.0% | |
| ! | AATTTAAGTTTGTGGGAACT+CGG | + | 24227:2681-2700 | MS.gene071788:intron | 30.0% |
| ! | GATTTTTCCTTTGACCTTTT+TGG | + | 24227:1920-1939 | MS.gene071788:CDS | 30.0% |
| ! | GCTCGTAAATATAAGCATTT+TGG | - | 24227:754-773 | MS.gene071788:intergenic | 30.0% |
| ! | GGATTCTGAAAATTGAAGAA+GGG | + | 24227:1532-1551 | MS.gene071788:intron | 30.0% |
| ! | TAATTTTGCCATGATAAGAC+GGG | + | 24227:2816-2835 | MS.gene071788:intron | 30.0% |
| ! | TGGAGAGAATTTAAGTTTGT+GGG | + | 24227:2674-2693 | MS.gene071788:intron | 30.0% |
| ! | TGGATTCTGAAAATTGAAGA+AGG | + | 24227:1531-1550 | MS.gene071788:intron | 30.0% |
| ! | TTATTGTTTCTTCAGACCTT+TGG | + | 24227:3469-3488 | MS.gene071788:intron | 30.0% |
| ! | TTGGAGAGAATTTAAGTTTG+TGG | + | 24227:2673-2692 | MS.gene071788:intron | 30.0% |
| ! | TTTCATTTCTGTTTTCTTCC+AGG | + | 24227:1955-1974 | MS.gene071788:CDS | 30.0% |
| !!! | ACAGTTGTATTTATTTTGCG+GGG | + | 24227:1763-1782 | MS.gene071788:intron | 30.0% |
| !!! | ATTTTTTGTCAGCTTAAGAG+AGG | - | 24227:1659-1678 | MS.gene071788:intergenic | 30.0% |
| !!! | TTTTTTGTCAGCTTAAGAGA+GGG | - | 24227:1658-1677 | MS.gene071788:intergenic | 30.0% |
| AAAATAACACCTACCTGTTG+AGG | + | 24227:2634-2653 | MS.gene071788:intron | 35.0% | |
| AACAATAGTGCACAAGAACA+TGG | - | 24227:3248-3267 | MS.gene071788:intergenic | 35.0% | |
| CAAAATATCAGCATATCACC+TGG | - | 24227:1976-1995 | MS.gene071788:intergenic | 35.0% | |
| CTGTTCACTGCTGTAATATA+AGG | - | 24227:1564-1583 | MS.gene071788:intergenic | 35.0% | |
| CTTCTACCTACTAAGACTAT+TGG | + | 24227:1616-1635 | MS.gene071788:intron | 35.0% | |
| GAAAAAGAATAACTCTGCGA+AGG | - | 24227:3172-3191 | MS.gene071788:intergenic | 35.0% | |
| GAAAATTCTATGGCAAACAC+AGG | - | 24227:3341-3360 | MS.gene071788:intergenic | 35.0% | |
| GCTTGGTTAATGTTATGAAG+AGG | + | 24227:1454-1473 | MS.gene071788:intron | 35.0% | |
| GCTTTAACTACAACGATTGT+GGG | + | 24227:3274-3293 | MS.gene071788:CDS | 35.0% | |
| GTCAAAGGAAAAATCTCCAA+GGG | - | 24227:1915-1934 | MS.gene071788:intergenic | 35.0% | |
| GTCATATGGAATTGCTTCAA+TGG | + | 24227:413-432 | MS.gene071788:CDS | 35.0% | |
| GTTTCTTATTATAGCCACAG+GGG | + | 24227:2179-2198 | MS.gene071788:CDS | 35.0% | |
| TCTGAAAATTGAAGAAGGGA+AGG | + | 24227:1536-1555 | MS.gene071788:intron | 35.0% | |
| TGCTTTAACTACAACGATTG+TGG | + | 24227:3273-3292 | MS.gene071788:CDS | 35.0% | |
| TGGTCAACAAAGATCAAAGA+GGG | + | 24227:1366-1385 | MS.gene071788:intron | 35.0% | |
| TTCCTTTCTGTCGTAATATC+AGG | + | 24227:1844-1863 | MS.gene071788:intron | 35.0% | |
| TTTCATGCTTATGTTTAGGC+TGG | + | 24227:874-893 | MS.gene071788:intron | 35.0% | |
| ! | ACCTTTGGTTTCTTCTTACT+GGG | + | 24227:3484-3503 | MS.gene071788:CDS | 35.0% |
| ! | ATGCTACCAATAGTCTTAGT+AGG | - | 24227:1625-1644 | MS.gene071788:intergenic | 35.0% |
| ! | ATTTAAGTTTGTGGGAACTC+GGG | + | 24227:2682-2701 | MS.gene071788:intron | 35.0% |
| ! | CAATAGTCTTAGTAGGTAGA+AGG | - | 24227:1618-1637 | MS.gene071788:intergenic | 35.0% |
| ! | CGTTCATAAACTAGCTTCAA+AGG | - | 24227:1318-1337 | MS.gene071788:intergenic | 35.0% |
| ! | TAAGAAGAACCATTGGTAAC+GGG | + | 24227:1431-1450 | MS.gene071788:intron | 35.0% |
| ! | TAGTATCTGATAACGTGACA+TGG | + | 24227:3077-3096 | MS.gene071788:intron | 35.0% |
| ! | TCATAAACTAGCTTCAAAGG+TGG | - | 24227:1315-1334 | MS.gene071788:intergenic | 35.0% |
| !! | CTTATTCTTTCGTTGGTGAT+GGG | + | 24227:3205-3224 | MS.gene071788:CDS | 35.0% |
| !! | GATATTGACTCCTTTCAAAC+TGG | - | 24227:1143-1162 | MS.gene071788:intergenic | 35.0% |
| !!! | CAGTTGTATTTATTTTGCGG+GGG | + | 24227:1764-1783 | MS.gene071788:intron | 35.0% |
| AAGCCATGCTATACCCAAAA+AGG | - | 24227:1937-1956 | MS.gene071788:intergenic | 40.0% | |
| ACCAAAGTGTATAAGCAAGG+TGG | - | 24227:1018-1037 | MS.gene071788:intergenic | 40.0% | |
| ACCACCTTGCTTATACACTT+TGG | + | 24227:1014-1033 | MS.gene071788:CDS | 40.0% | |
| ACCCAGTAAGAAGAAACCAA+AGG | - | 24227:3488-3507 | MS.gene071788:intergenic | 40.0% | |
| ACGATTGTGGGTGTTCTTAA+AGG | + | 24227:3286-3305 | MS.gene071788:CDS | 40.0% | |
| ACTTATCGCTGGATGTTTCA+TGG | + | 24227:1204-1223 | MS.gene071788:CDS | 40.0% | |
| AGTGAAGGTAGTTACAGATG+TGG | + | 24227:3609-3628 | MS.gene071788:CDS | 40.0% | |
| ATCCAGTCACATTCAAAGCA+TGG | - | 24227:3522-3541 | MS.gene071788:intergenic | 40.0% | |
| ATGATGCATGCTAAGTGTCT+TGG | - | 24227:608-627 | MS.gene071788:intergenic | 40.0% | |
| ATGCTTATGTTTAGGCTGGA+GGG | + | 24227:878-897 | MS.gene071788:intron | 40.0% | |
| CACCTGATATTACGACAGAA+AGG | - | 24227:1849-1868 | MS.gene071788:intergenic | 40.0% | |
| CCATCACCAACGAAAGAATA+AGG | - | 24227:3207-3226 | MS.gene071788:intergenic | 40.0% | |
| CTTATCGCTGGATGTTTCAT+GGG | + | 24227:1205-1224 | MS.gene071788:CDS | 40.0% | |
| GAAACCATTACCTGAGTTGT+AGG | - | 24227:1241-1260 | MS.gene071788:intergenic | 40.0% | |
| GCTATACCCAAAAAGGTCAA+AGG | - | 24227:1930-1949 | MS.gene071788:intergenic | 40.0% | |
| GGTCAAAGGAAAAATCTCCA+AGG | - | 24227:1916-1935 | MS.gene071788:intergenic | 40.0% | |
| GGTGATCCTTATTCTTTCGT+TGG | + | 24227:3198-3217 | MS.gene071788:CDS | 40.0% | |
| GTGGTCAACAAAGATCAAAG+AGG | + | 24227:1365-1384 | MS.gene071788:intron | 40.0% | |
| TCGACCAAAGTGTATAAGCA+AGG | - | 24227:1021-1040 | MS.gene071788:intergenic | 40.0% | |
| TGAAATTACCTGAGTGTGGT+GGG | + | 24227:2754-2773 | MS.gene071788:intron | 40.0% | |
| TGGAATTGCTTCAATGGCAA+TGG | + | 24227:419-438 | MS.gene071788:CDS | 40.0% | |
| TTAATTGCGGCAGTGTCATA+TGG | + | 24227:399-418 | MS.gene071788:CDS | 40.0% | |
| TTATCGCTGGATGTTTCATG+GGG | + | 24227:1206-1225 | MS.gene071788:CDS | 40.0% | |
| TTTGCTTTGGCCAGTTTGAA+AGG | + | 24227:1130-1149 | MS.gene071788:CDS | 40.0% | |
| ! | AACCATAGCTTGCAACTATC+TGG | + | 24227:3030-3049 | MS.gene071788:intron | 40.0% |
| ! | ACCATAGCTTGCAACTATCT+GGG | + | 24227:3031-3050 | MS.gene071788:intron | 40.0% |
| ! | CCTTATTCTTTCGTTGGTGA+TGG | + | 24227:3204-3223 | MS.gene071788:CDS | 40.0% |
| ! | GACCTTTGGTTTCTTCTTAC+TGG | + | 24227:3483-3502 | MS.gene071788:intron | 40.0% |
| ! | TCTTAAAGGAGTTGGTTCCA+CGG | + | 24227:3300-3319 | MS.gene071788:CDS | 40.0% |
| ! | TGAGAATGGACTTTCATCAG+TGG | + | 24227:2113-2132 | MS.gene071788:CDS | 40.0% |
| ! | TGCTTTGAATGTGACTGGAT+TGG | + | 24227:3522-3541 | MS.gene071788:CDS | 40.0% |
| ! | TTTGGTTTCTTCTTACTGGG+TGG | + | 24227:3487-3506 | MS.gene071788:CDS | 40.0% |
| !! | AAGAAGAACCATTGGTAACG+GGG | + | 24227:1432-1451 | MS.gene071788:intron | 40.0% |
| !! | AAGTAGATTCTGCATCGGTT+CGG | - | 24227:282-301 | MS.gene071788:intergenic | 40.0% |
| !!! | TGACCTTTTTGGGTATAGCA+TGG | + | 24227:1931-1950 | MS.gene071788:CDS | 40.0% |
| AAACCTCTCAAACCAGACTG+AGG | - | 24227:2583-2602 | MS.gene071788:intergenic | 45.0% | |
| AAGAGCAAGAGGGGTAGATT+TGG | + | 24227:1054-1073 | MS.gene071788:CDS | 45.0% | |
| AAGAGGGGTAGATTTGGCAA+CGG | + | 24227:1060-1079 | MS.gene071788:CDS | 45.0% | |
| AAGCGGTGTAAGCCTCTTTA+TGG | - | 24227:1179-1198 | MS.gene071788:intergenic | 45.0% | |
| AATGACTCTCCTCACTTTGC+AGG | + | 24227:482-501 | MS.gene071788:CDS | 45.0% | |
| ACAAGGTACATGGTCTGCAT+AGG | - | 24227:2072-2091 | MS.gene071788:intergenic | 45.0% | |
| AGAATATGGGAATTCCCCTG+TGG | - | 24227:2196-2215 | MS.gene071788:intergenic | 45.0% | |
| ATAACACCTACCTGTTGAGG+AGG | + | 24227:2637-2656 | MS.gene071788:intron | 45.0% | |
| ATGGGATACACAAGAGCAAG+AGG | + | 24227:1043-1062 | MS.gene071788:CDS | 45.0% | |
| CATGCTTATGTTTAGGCTGG+AGG | + | 24227:877-896 | MS.gene071788:intron | 45.0% | |
| GAAATTACCTGAGTGTGGTG+GGG | + | 24227:2755-2774 | MS.gene071788:intron | 45.0% | |
| GAAGGTAGTTACAGATGTGG+AGG | + | 24227:3612-3631 | MS.gene071788:CDS | 45.0% | |
| GAGACCTACAACTCAGGTAA+TGG | + | 24227:1234-1253 | MS.gene071788:intron | 45.0% | |
| GAGTTGTCAGGCAACTCAAA+GGG | + | 24227:2524-2543 | MS.gene071788:intron | 45.0% | |
| GCAAACAAACCTGCAAAGTG+AGG | - | 24227:494-513 | MS.gene071788:intergenic | 45.0% | |
| GGAAAAGACCCGTCTTATCA+TGG | - | 24227:2827-2846 | MS.gene071788:intergenic | 45.0% | |
| GGTGTGAAATTACCTGAGTG+TGG | + | 24227:2750-2769 | MS.gene071788:intron | 45.0% | |
| GTGAAATTACCTGAGTGTGG+TGG | + | 24227:2753-2772 | MS.gene071788:intron | 45.0% | |
| GTGGGTGTTCTTAAAGGAGT+TGG | + | 24227:3292-3311 | MS.gene071788:CDS | 45.0% | |
| TAACACCTACCTGTTGAGGA+GGG | + | 24227:2638-2657 | MS.gene071788:intron | 45.0% | |
| TCCCAGATAGTTGCAAGCTA+TGG | - | 24227:3035-3054 | MS.gene071788:intergenic | 45.0% | |
| TGGGATACACAAGAGCAAGA+GGG | + | 24227:1044-1063 | MS.gene071788:CDS | 45.0% | |
| TTGGTCATCAATACAGCTGG+TGG | + | 24227:3541-3560 | MS.gene071788:CDS | 45.0% | |
| ! | CAGATTTTTCCACCAGCACA+AGG | - | 24227:2089-2108 | MS.gene071788:intergenic | 45.0% |
| ! | CTTGTGCTGGTGGAAAAATC+TGG | + | 24227:2087-2106 | MS.gene071788:CDS | 45.0% |
| ! | GAAAAATCTGGCGCTGAGAA+TGG | + | 24227:2099-2118 | MS.gene071788:CDS | 45.0% |
| ! | GTCCATGCTTTGAATGTGAC+TGG | + | 24227:3517-3536 | MS.gene071788:CDS | 45.0% |
| ! | TCAGTGATATTGACTGCTGC+TGG | + | 24227:1875-1894 | MS.gene071788:CDS | 45.0% |
| !! | CGCTGCCATGTTTTGAATGT+TGG | + | 24227:2279-2298 | MS.gene071788:intron | 45.0% |
| !! | CTTTGAGTTGCCTGACAACT+CGG | - | 24227:2525-2544 | MS.gene071788:intergenic | 45.0% |
| !! | GGATTGGTCATCAATACAGC+TGG | + | 24227:3538-3557 | MS.gene071788:CDS | 45.0% |
| AACACCTACCTGTTGAGGAG+GGG | + | 24227:2639-2658 | MS.gene071788:intron | 50.0% | |
| AGTTTGTGGGAACTCGGGAT+TGG | + | 24227:2687-2706 | MS.gene071788:intron | 50.0% | |
| CATGGTCTGCATAGGAGAGT+AGG | - | 24227:2064-2083 | MS.gene071788:intergenic | 50.0% | |
| CCAGCGATAAGTACAGCAAG+CGG | - | 24227:1196-1215 | MS.gene071788:intergenic | 50.0% | |
| CGAGTTGTCAGGCAACTCAA+AGG | + | 24227:2523-2542 | MS.gene071788:intron | 50.0% | |
| CTCTCAAACCAGACTGAGGA+GGG | - | 24227:2579-2598 | MS.gene071788:intergenic | 50.0% | |
| CTGGATGTTTCATGGGGAAG+GGG | + | 24227:1212-1231 | MS.gene071788:CDS | 50.0% | |
| GCTGGATGTTTCATGGGGAA+GGG | + | 24227:1211-1230 | MS.gene071788:CDS | 50.0% | |
| GCTTGTCTTTCCGAGTTGTC+AGG | + | 24227:2512-2531 | MS.gene071788:intron | 50.0% | |
| GGCCAAAGCAAATGCGACAT+GGG | - | 24227:1122-1141 | MS.gene071788:intergenic | 50.0% | |
| GGGATACACAAGAGCAAGAG+GGG | + | 24227:1045-1064 | MS.gene071788:CDS | 50.0% | |
| GTTTGTGGGAACTCGGGATT+GGG | + | 24227:2688-2707 | MS.gene071788:intron | 50.0% | |
| TAACCAAGCCCCGTTACCAA+TGG | - | 24227:1443-1462 | MS.gene071788:intergenic | 50.0% | |
| TCTCAAACCAGACTGAGGAG+GGG | - | 24227:2578-2597 | MS.gene071788:intergenic | 50.0% | |
| TGCCCATGTCGCATTTGCTT+TGG | + | 24227:1117-1136 | MS.gene071788:CDS | 50.0% | |
| TGGCCAAAGCAAATGCGACA+TGG | - | 24227:1123-1142 | MS.gene071788:intergenic | 50.0% | |
| TTCCACCAGCACAAGGTACA+TGG | - | 24227:2082-2101 | MS.gene071788:intergenic | 50.0% | |
| ! | AGTTGGTTCCACGGTAAGCT+AGG | + | 24227:3309-3328 | MS.gene071788:intron | 50.0% |
| ! | TCAATACAGCTGGTGGTGTG+TGG | + | 24227:3548-3567 | MS.gene071788:CDS | 50.0% |
| ACACCTACCTGTTGAGGAGG+GGG | + | 24227:2640-2659 | MS.gene071788:intron | 55.0% | |
| CCTCTCAAACCAGACTGAGG+AGG | - | 24227:2580-2599 | MS.gene071788:intergenic | 55.0% | |
| CGCTGGATGTTTCATGGGGA+AGG | + | 24227:1210-1229 | MS.gene071788:CDS | 55.0% | |
| GAAGGGGAGACCTACAACTC+AGG | + | 24227:1228-1247 | MS.gene071788:CDS | 55.0% | |
| GACCATGTACCTTGTGCTGG+TGG | + | 24227:2077-2096 | MS.gene071788:intron | 55.0% | |
| GCAGACCATGTACCTTGTGC+TGG | + | 24227:2074-2093 | MS.gene071788:intron | 55.0% | |
| GGAGTTCTCATAGCAGCCCT+TGG | + | 24227:1896-1915 | MS.gene071788:CDS | 55.0% | |
| GGATCACTCCTAGCTTACCG+TGG | - | 24227:3320-3339 | MS.gene071788:intergenic | 55.0% | |
| TGAAACCGGGAGCAGTTGCT+TGG | - | 24227:1086-1105 | MS.gene071788:intergenic | 55.0% | |
| ! | ATTACCTGAGTGTGGTGGGG+TGG | + | 24227:2758-2777 | MS.gene071788:intron | 55.0% |
| ! | CCTCCTCAGTCTGGTTTGAG+AGG | + | 24227:2577-2596 | MS.gene071788:intron | 55.0% |
| !! | CCGCTTGCTGTACTTATCGC+TGG | + | 24227:1193-1212 | MS.gene071788:CDS | 55.0% |
| !! | GAACCATTGGTAACGGGGCT+TGG | + | 24227:1437-1456 | MS.gene071788:intron | 55.0% |
| AACGGCCAAGCAACTGCTCC+CGG | + | 24227:1078-1097 | MS.gene071788:CDS | 60.0% | |
| ACCTACCTGTTGAGGAGGGG+GGG | + | 24227:2642-2661 | MS.gene071788:intron | 60.0% | |
| CACCTACCTGTTGAGGAGGG+GGG | + | 24227:2641-2660 | MS.gene071788:intron | 60.0% | |
| CAGACTGAGGAGGGGAAGAC+TGG | - | 24227:2570-2589 | MS.gene071788:intergenic | 60.0% | |
| CAGTCTTCCCCTCCTCAGTC+TGG | + | 24227:2568-2587 | MS.gene071788:intron | 60.0% | |
| CTTTCCACCCCACCACACTC+AGG | - | 24227:2765-2784 | MS.gene071788:intergenic | 60.0% | |
| AGGAGGGGGGGGTTGAGGTT+TGG | + | 24227:2654-2673 | MS.gene071788:intron | 65.0% | |
| CCTACCTGTTGAGGAGGGGG+GGG | + | 24227:2643-2662 | MS.gene071788:intron | 65.0% | |
| TCAACCCCCCCCTCCTCAAC+AGG | - | 24227:2650-2669 | MS.gene071788:intergenic | 65.0% | |
| TGTTGAGGAGGGGGGGGTTG+AGG | + | 24227:2649-2668 | MS.gene071788:intron | 65.0% | |
| CCCCCCCCTCCTCAACAGGT+AGG | - | 24227:2646-2665 | MS.gene071788:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24227 | gene | 277 | 3648 | 277 | ID=MS.gene071788 |
| 24227 | mRNA | 277 | 3648 | 277 | ID=MS.gene071788.t1;Parent=MS.gene071788 |
| 24227 | exon | 277 | 314 | 277 | ID=MS.gene071788.t1.exon1;Parent=MS.gene071788.t1 |
| 24227 | CDS | 277 | 314 | 277 | ID=cds.MS.gene071788.t1;Parent=MS.gene071788.t1 |
| 24227 | exon | 398 | 507 | 398 | ID=MS.gene071788.t1.exon2;Parent=MS.gene071788.t1 |
| 24227 | CDS | 398 | 507 | 398 | ID=cds.MS.gene071788.t1;Parent=MS.gene071788.t1 |
| 24227 | exon | 1005 | 1249 | 1005 | ID=MS.gene071788.t1.exon3;Parent=MS.gene071788.t1 |
| 24227 | CDS | 1005 | 1249 | 1005 | ID=cds.MS.gene071788.t1;Parent=MS.gene071788.t1 |
| 24227 | exon | 1866 | 1976 | 1866 | ID=MS.gene071788.t1.exon4;Parent=MS.gene071788.t1 |
| 24227 | CDS | 1866 | 1976 | 1866 | ID=cds.MS.gene071788.t1;Parent=MS.gene071788.t1 |
| 24227 | exon | 2078 | 2236 | 2078 | ID=MS.gene071788.t1.exon5;Parent=MS.gene071788.t1 |
| 24227 | CDS | 2078 | 2236 | 2078 | ID=cds.MS.gene071788.t1;Parent=MS.gene071788.t1 |
| 24227 | exon | 3178 | 3321 | 3178 | ID=MS.gene071788.t1.exon6;Parent=MS.gene071788.t1 |
| 24227 | CDS | 3178 | 3321 | 3178 | ID=cds.MS.gene071788.t1;Parent=MS.gene071788.t1 |
| 24227 | exon | 3484 | 3648 | 3484 | ID=MS.gene071788.t1.exon7;Parent=MS.gene071788.t1 |
| 24227 | CDS | 3484 | 3648 | 3484 | ID=cds.MS.gene071788.t1;Parent=MS.gene071788.t1 |
| Gene Sequence |
| Protein sequence |
