Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071835.t1 | AES65076.2 | 96.5 | 228 | 6 | 2 | 1 | 227 | 1 | 227 | 4.10E-115 | 424.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071835.t1 | Q8VXU6 | 50.6 | 235 | 95 | 8 | 1 | 226 | 1 | 223 | 5.2e-50 | 199.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071835.t1 | G7IMY1 | 96.5 | 228 | 6 | 2 | 1 | 227 | 1 | 227 | 3.0e-115 | 424.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene071835 | 0.827023 | 1.97E-54 | -1.69E-46 |
| MS.gene050330 | MS.gene071835 | -0.815707 | 8.05E-52 | -1.69E-46 |
| MS.gene051662 | MS.gene071835 | 0.820571 | 6.39E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene071835 | 0.802819 | 4.68E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene071835 | 0.804711 | 1.90E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene071835 | 0.804466 | 2.13E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene071835 | 0.803987 | 2.68E-49 | -1.69E-46 |
| MS.gene057260 | MS.gene071835 | 0.809867 | 1.53E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene071835 | 0.875854 | 2.22E-68 | -1.69E-46 |
| MS.gene059518 | MS.gene071835 | 0.801383 | 9.24E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene071835 | 0.809587 | 1.76E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071835.t1 | MTR_2g035070 | 97.368 | 228 | 4 | 2 | 1 | 227 | 1 | 227 | 6.12e-163 | 449 |
| MS.gene071835.t1 | MTR_1g083780 | 50.463 | 216 | 79 | 9 | 20 | 227 | 24 | 219 | 5.13e-60 | 188 |
| MS.gene071835.t1 | MTR_7g112400 | 49.474 | 95 | 43 | 1 | 20 | 109 | 32 | 126 | 1.04e-29 | 108 |
| MS.gene071835.t1 | MTR_7g109145 | 32.558 | 215 | 120 | 4 | 13 | 227 | 4 | 193 | 3.03e-22 | 90.5 |
| MS.gene071835.t1 | MTR_7g112403 | 48.000 | 125 | 57 | 4 | 109 | 227 | 1 | 123 | 3.14e-20 | 83.2 |
| MS.gene071835.t1 | MTR_7g109145 | 34.615 | 156 | 90 | 3 | 75 | 227 | 3 | 149 | 4.02e-18 | 78.2 |
| MS.gene071835.t1 | MTR_7g109145 | 34.459 | 148 | 85 | 3 | 83 | 227 | 3 | 141 | 7.25e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071835.t1 | AT5G49230 | 48.069 | 233 | 93 | 8 | 1 | 227 | 1 | 211 | 2.05e-55 | 176 |
| MS.gene071835.t1 | AT3G05700 | 44.958 | 238 | 105 | 9 | 1 | 227 | 1 | 223 | 5.26e-52 | 168 |
| MS.gene071835.t1 | AT5G49230 | 46.352 | 233 | 92 | 8 | 1 | 227 | 1 | 206 | 1.00e-51 | 166 |
| MS.gene071835.t1 | AT3G06760 | 50.000 | 210 | 88 | 7 | 23 | 227 | 27 | 224 | 1.71e-51 | 166 |
| MS.gene071835.t1 | AT5G26990 | 44.351 | 239 | 104 | 9 | 1 | 227 | 1 | 222 | 3.96e-51 | 166 |
| MS.gene071835.t1 | AT3G05700 | 45.408 | 196 | 82 | 8 | 1 | 186 | 1 | 181 | 4.28e-43 | 144 |
| MS.gene071835.t1 | AT1G56280 | 42.723 | 213 | 88 | 7 | 20 | 225 | 14 | 199 | 7.83e-42 | 141 |
| MS.gene071835.t1 | AT1G56280 | 43.878 | 196 | 79 | 7 | 37 | 225 | 34 | 205 | 2.49e-38 | 132 |
| MS.gene071835.t1 | AT4G02200 | 39.583 | 192 | 91 | 5 | 39 | 224 | 37 | 209 | 1.32e-33 | 120 |
| MS.gene071835.t1 | AT3G06760 | 41.629 | 221 | 100 | 8 | 23 | 227 | 27 | 234 | 1.72e-32 | 118 |
| MS.gene071835.t1 | AT4G02200 | 38.587 | 184 | 88 | 5 | 39 | 216 | 37 | 201 | 3.72e-30 | 111 |
| MS.gene071835.t1 | AT4G02200 | 36.893 | 206 | 91 | 6 | 39 | 224 | 37 | 223 | 1.69e-29 | 110 |
| MS.gene071835.t1 | AT1G02750 | 36.224 | 196 | 97 | 6 | 39 | 226 | 41 | 216 | 2.63e-28 | 107 |
| MS.gene071835.t1 | AT1G02750 | 34.392 | 189 | 94 | 6 | 39 | 226 | 41 | 200 | 1.54e-21 | 89.0 |
Find 47 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGGATTGCATTCTCTTCT+TGG | 0.245703 | 2.2:-53847686 | MS.gene071835:CDS |
| GTGGTGGTGGTGATGATTTA+AGG | 0.255964 | 2.2:-53849493 | MS.gene071835:CDS |
| TCATAATCTTCAGCACAAAA+AGG | 0.288334 | 2.2:+53849455 | None:intergenic |
| AAGTTTACGTGCAGCGTAAA+AGG | 0.305767 | 2.2:-53847763 | MS.gene071835:CDS |
| AGAAAAGAGTTGAGGGAAGC+AGG | 0.309169 | 2.2:-53847704 | MS.gene071835:CDS |
| AAAGAAACCAACTTTCAAAA+AGG | 0.347692 | 2.2:+53848269 | None:intergenic |
| ACAGCTTCGTCACCAACAAC+TGG | 0.357688 | 2.2:+53847596 | None:intergenic |
| AACGATTGCAACAAAGTATC+AGG | 0.362978 | 2.2:+53847629 | None:intergenic |
| TTTCGAGCTATCGTTTACTA+TGG | 0.363939 | 2.2:+53847541 | None:intergenic |
| TTCAGGTGTGTCCTGCTTGT+GGG | 0.376343 | 2.2:-53848356 | MS.gene071835:intron |
| CAAAGTATCAGGTTCGGAAT+TGG | 0.385398 | 2.2:+53847640 | None:intergenic |
| TGGTGGTGGTGATGATTTAA+GGG | 0.397394 | 2.2:-53849492 | MS.gene071835:CDS |
| GTTTACTATGGCAGCTTCAA+TGG | 0.397661 | 2.2:+53847553 | None:intergenic |
| CGCCGTTACTATTCTCGATC+CGG | 0.436721 | 2.2:-53849650 | MS.gene071835:intron |
| AAAACATGGACTCTGATTCA+TGG | 0.453838 | 2.2:-53849700 | None:intergenic |
| GGATTGCATTCTCTTCTTGG+AGG | 0.458470 | 2.2:-53847683 | MS.gene071835:CDS |
| TTTCAGGTGTGTCCTGCTTG+TGG | 0.467996 | 2.2:-53848357 | MS.gene071835:intron |
| CGAAGGTTTGATTTCGTGCA+AGG | 0.485172 | 2.2:-53846989 | MS.gene071835:CDS |
| GTTATTTAGAAAAGAGTTGA+GGG | 0.489200 | 2.2:-53847711 | MS.gene071835:CDS |
| GATGCTGAACCTGGTGGTGG+TGG | 0.514579 | 2.2:-53849506 | MS.gene071835:CDS |
| AGTATCAGGTTCGGAATTGG+AGG | 0.520777 | 2.2:+53847643 | None:intergenic |
| TTATAACTCATCATCAAGAA+TGG | 0.527350 | 2.2:+53846952 | None:intergenic |
| CGTTATTTAGAAAAGAGTTG+AGG | 0.531210 | 2.2:-53847712 | MS.gene071835:CDS |
| TAGCTCGAAAGATGATTTCG+TGG | 0.542543 | 2.2:-53847528 | MS.gene071835:CDS |
| TTGCAACAAAGTATCAGGTT+CGG | 0.543065 | 2.2:+53847634 | None:intergenic |
| ATCCTCTTCAAGCTAACACT+GGG | 0.551131 | 2.2:-53849397 | MS.gene071835:CDS |
| CATCCTCTTCAAGCTAACAC+TGG | 0.567489 | 2.2:-53849398 | MS.gene071835:CDS |
| CTTCTCTACTCGATCCTCGT+CGG | 0.568903 | 2.2:+53847015 | None:intergenic |
| GGAAATGATGATGCTGAACC+TGG | 0.576479 | 2.2:-53849515 | MS.gene071835:CDS |
| ACCCCAGTGTTAGCTTGAAG+AGG | 0.580064 | 2.2:+53849395 | None:intergenic |
| CGAAAGATGATTTCGTGGAA+AGG | 0.582410 | 2.2:-53847523 | MS.gene071835:intron |
| TTCGGAATTGGAGGAAGCTG+TGG | 0.593717 | 2.2:+53847652 | None:intergenic |
| GAAGGTTTGATTTCGTGCAA+GGG | 0.604633 | 2.2:-53846988 | MS.gene071835:CDS |
| CGTAAAAGGAGGGTGAGGAA+AGG | 0.608256 | 2.2:-53847749 | MS.gene071835:CDS |
| CAGCTTCGTCACCAACAACT+GGG | 0.608504 | 2.2:+53847597 | None:intergenic |
| TTTACGTGCAGCGTAAAAGG+AGG | 0.609185 | 2.2:-53847760 | MS.gene071835:CDS |
| TGCAGCGTAAAAGGAGGGTG+AGG | 0.609548 | 2.2:-53847754 | MS.gene071835:CDS |
| AAATCATCACCACCACCACC+AGG | 0.612097 | 2.2:+53849497 | None:intergenic |
| GATGATGCTGAACCTGGTGG+TGG | 0.614096 | 2.2:-53849509 | MS.gene071835:CDS |
| TAACTCATCATCAAGAATGG+TGG | 0.628185 | 2.2:+53846955 | None:intergenic |
| TCGTCGGAAAGCTGTACTTG+TGG | 0.638527 | 2.2:+53847031 | None:intergenic |
| AACCGGATCGAGAATAGTAA+CGG | 0.650025 | 2.2:+53849648 | None:intergenic |
| ATCGAGTAGAGAAGACACGA+AGG | 0.652664 | 2.2:-53847006 | MS.gene071835:CDS |
| TTACGTGCAGCGTAAAAGGA+GGG | 0.661430 | 2.2:-53847759 | MS.gene071835:CDS |
| ACAAGTACAGCTTTCCGACG+AGG | 0.683663 | 2.2:-53847029 | MS.gene071835:CDS |
| AATGATGATGCTGAACCTGG+TGG | 0.756267 | 2.2:-53849512 | MS.gene071835:CDS |
| TCCTCTTCAAGCTAACACTG+GGG | 0.784823 | 2.2:-53849396 | MS.gene071835:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAATGATAATTATGA+TGG | + | chr2.2:53847029-53847048 | None:intergenic | 10.0% |
| !!! | AATAAAGATATGTTTAATTT+TGG | - | chr2.2:53847468-53847487 | MS.gene071835:intron | 10.0% |
| !!! | TTTTATTACATAAATTTGAT+AGG | - | chr2.2:53847889-53847908 | MS.gene071835:intron | 10.0% |
| !! | TTTATTCAAAATTGTAATTG+AGG | + | chr2.2:53847454-53847473 | None:intergenic | 15.0% |
| !!! | AAAATGTGTACATTTTTTAA+TGG | - | chr2.2:53848598-53848617 | MS.gene071835:intron | 15.0% |
| !!! | CAACAATTTATTTTAAAATG+TGG | - | chr2.2:53847592-53847611 | MS.gene071835:CDS | 15.0% |
| !!! | TAAAAAATGTACACATTTTT+CGG | + | chr2.2:53848597-53848616 | None:intergenic | 15.0% |
| !!! | TAAAATGTGGTTATATTTTA+GGG | - | chr2.2:53847605-53847624 | MS.gene071835:CDS | 15.0% |
| !!! | TTAAAATGTGGTTATATTTT+AGG | - | chr2.2:53847604-53847623 | MS.gene071835:CDS | 15.0% |
| !! | AATGCAATAAAATATGAACA+TGG | + | chr2.2:53848534-53848553 | None:intergenic | 20.0% |
| !!! | AAAATATCCTTTTTGAAAGT+TGG | - | chr2.2:53848371-53848390 | MS.gene071835:intron | 20.0% |
| !!! | AAAATGTGGTTATATTTTAG+GGG | - | chr2.2:53847606-53847625 | MS.gene071835:CDS | 20.0% |
| !!! | GTTTTAATTAAGGTTATACA+TGG | - | chr2.2:53847515-53847534 | MS.gene071835:intron | 20.0% |
| !!! | TCAAATAAAATTTGTTTTCC+AGG | + | chr2.2:53848557-53848576 | None:intergenic | 20.0% |
| !!! | TCTATATAAAAGTATAGTAC+CGG | - | chr2.2:53849349-53849368 | MS.gene071835:intron | 20.0% |
| !!! | TTTAGTTTTGTTGAAATTGT+TGG | - | chr2.2:53847067-53847086 | MS.gene071835:intron | 20.0% |
| !!! | TTTCAGTTTTCACATATATT+AGG | - | chr2.2:53847364-53847383 | MS.gene071835:intron | 20.0% |
| ! | AAAGAAACCAACTTTCAAAA+AGG | + | chr2.2:53848381-53848400 | None:intergenic | 25.0% |
| ! | ATATAACATTATGCAGTGTT+TGG | - | chr2.2:53847987-53848006 | MS.gene071835:intron | 25.0% |
| ! | ATGTATATGGATACTATTGT+TGG | - | chr2.2:53849148-53849167 | MS.gene071835:intron | 25.0% |
| ! | CATAAATTTGATAGGTTGTT+TGG | - | chr2.2:53847897-53847916 | MS.gene071835:intron | 25.0% |
| ! | CATGCTAAATATAAACATAC+TGG | + | chr2.2:53848668-53848687 | None:intergenic | 25.0% |
| ! | GAGTTAAGTAATCTATATAC+CGG | + | chr2.2:53849328-53849347 | None:intergenic | 25.0% |
| ! | GTATTTAGTGCAATTTACTT+TGG | - | chr2.2:53847641-53847660 | MS.gene071835:CDS | 25.0% |
| ! | GTTATTTAGAAAAGAGTTGA+GGG | - | chr2.2:53848936-53848955 | MS.gene071835:intron | 25.0% |
| ! | TAATTAAAACAAGTTGTGTC+TGG | - | chr2.2:53848809-53848828 | MS.gene071835:intron | 25.0% |
| ! | TCTTCATAGAATAGATATAC+AGG | - | chr2.2:53848038-53848057 | MS.gene071835:intron | 25.0% |
| ! | TTATAACTCATCATCAAGAA+TGG | + | chr2.2:53849698-53849717 | None:intergenic | 25.0% |
| ! | TTTATTTCAGTATCGTTAGA+TGG | - | chr2.2:53848746-53848765 | MS.gene071835:intron | 25.0% |
| !! | TTCATATTTTATTGCATTCC+TGG | - | chr2.2:53848536-53848555 | MS.gene071835:intron | 25.0% |
| !!! | AAATGTGGTTATATTTTAGG+GGG | - | chr2.2:53847607-53847626 | MS.gene071835:CDS | 25.0% |
| !!! | AAGTTGTAGGTATTTTTGTA+GGG | - | chr2.2:53849204-53849223 | MS.gene071835:intron | 25.0% |
| !!! | ACACTTGGTAGTTTTAATTA+AGG | - | chr2.2:53847505-53847524 | MS.gene071835:intron | 25.0% |
| !!! | ATAATTATGATGGTTCTAAC+CGG | + | chr2.2:53847019-53847038 | None:intergenic | 25.0% |
| !!! | GTTTTTAACTTTCAAACACT+TGG | - | chr2.2:53847490-53847509 | MS.gene071835:intron | 25.0% |
| !!! | TAAGTTGTAGGTATTTTTGT+AGG | - | chr2.2:53849203-53849222 | MS.gene071835:intron | 25.0% |
| !!! | TTTATTTTTAACCCAGTTGT+TGG | - | chr2.2:53849039-53849058 | MS.gene071835:intron | 25.0% |
| ACACCGAAAACATATATGAA+TGG | + | chr2.2:53848458-53848477 | None:intergenic | 30.0% | |
| AGAAATCATAGATACGATGA+GGG | - | chr2.2:53847711-53847730 | MS.gene071835:CDS | 30.0% | |
| ATCAATGTATGCAGAGTAAA+TGG | + | chr2.2:53849388-53849407 | None:intergenic | 30.0% | |
| CAATTGATACACAAGTTTGT+TGG | - | chr2.2:53848495-53848514 | MS.gene071835:intron | 30.0% | |
| CATAATCTTCAGCACAAAAA+GGG | + | chr2.2:53847194-53847213 | None:intergenic | 30.0% | |
| CGTTATTTAGAAAAGAGTTG+AGG | - | chr2.2:53848935-53848954 | MS.gene071835:intron | 30.0% | |
| CTGATGATTGTGATAATTGA+TGG | - | chr2.2:53848254-53848273 | MS.gene071835:intron | 30.0% | |
| GCTCATTAAAACTAATAAGC+AGG | + | chr2.2:53848170-53848189 | None:intergenic | 30.0% | |
| TAAGTAATCTATATACCGGT+GGG | + | chr2.2:53849324-53849343 | None:intergenic | 30.0% | |
| TAGAATATTATTTACCCCAC+CGG | - | chr2.2:53849306-53849325 | MS.gene071835:intron | 30.0% | |
| TCATAATCTTCAGCACAAAA+AGG | + | chr2.2:53847195-53847214 | None:intergenic | 30.0% | |
| TGATGAAATGTTGTATCCTT+AGG | - | chr2.2:53849442-53849461 | MS.gene071835:CDS | 30.0% | |
| TTAAGTAATCTATATACCGG+TGG | + | chr2.2:53849325-53849344 | None:intergenic | 30.0% | |
| TTTAGTGCAATTTACTTTGG+AGG | - | chr2.2:53847644-53847663 | MS.gene071835:CDS | 30.0% | |
| ! | ATTGTGATAATTGATGGCAT+TGG | - | chr2.2:53848260-53848279 | MS.gene071835:intron | 30.0% |
| ! | GCACCATTCATATATGTTTT+CGG | - | chr2.2:53848452-53848471 | MS.gene071835:intron | 30.0% |
| ! | GCATACATTGATTAGATTTG+TGG | - | chr2.2:53849396-53849415 | MS.gene071835:intron | 30.0% |
| !! | GATTTCCTTTGCTTTAGAAA+TGG | - | chr2.2:53849176-53849195 | MS.gene071835:intron | 30.0% |
| !! | GTTATATTTTAGGGGGAAAA+AGG | - | chr2.2:53847614-53847633 | MS.gene071835:CDS | 30.0% |
| !! | GTTGTTTCAGATCTGTTTTT+GGG | - | chr2.2:53847108-53847127 | MS.gene071835:intron | 30.0% |
| !!! | TGTTGGTGATGATTTGTTTT+TGG | - | chr2.2:53847084-53847103 | MS.gene071835:intron | 30.0% |
| !!! | TGTTGTTTCAGATCTGTTTT+TGG | - | chr2.2:53847107-53847126 | MS.gene071835:intron | 30.0% |
| AAGTAATCTATATACCGGTG+GGG | + | chr2.2:53849323-53849342 | None:intergenic | 35.0% | |
| AATGTATGCAGAGTAAATGG+CGG | + | chr2.2:53849385-53849404 | None:intergenic | 35.0% | |
| AGAAATGGATGCTAAGTTGT+AGG | - | chr2.2:53849191-53849210 | MS.gene071835:intron | 35.0% | |
| CATACTAACTTTCCCATATC+CGG | + | chr2.2:53847846-53847865 | None:intergenic | 35.0% | |
| CATCTTAAAAGTAGCGAATC+CGG | - | chr2.2:53847824-53847843 | MS.gene071835:intron | 35.0% | |
| CTATTACAGTTCAAGTCACA+TGG | + | chr2.2:53849483-53849502 | None:intergenic | 35.0% | |
| CTGTTCTACCAATACTTGTT+TGG | - | chr2.2:53848119-53848138 | MS.gene071835:intron | 35.0% | |
| CTTGAACACCAAACAAGTAT+TGG | + | chr2.2:53848130-53848149 | None:intergenic | 35.0% | |
| GAAAAACTTTGCATGTTGAG+TGG | + | chr2.2:53848351-53848370 | None:intergenic | 35.0% | |
| GAAACCAGACATTATTCCTA+AGG | + | chr2.2:53849461-53849480 | None:intergenic | 35.0% | |
| GACAAAGACTGACTAAAACA+TGG | + | chr2.2:53848192-53848211 | None:intergenic | 35.0% | |
| GAGAAATCATAGATACGATG+AGG | - | chr2.2:53847710-53847729 | MS.gene071835:CDS | 35.0% | |
| GTATCCTTAGGAATAATGTC+TGG | - | chr2.2:53849454-53849473 | MS.gene071835:CDS | 35.0% | |
| TAACTCATCATCAAGAATGG+TGG | + | chr2.2:53849695-53849714 | None:intergenic | 35.0% | |
| TAGTATGAGTTTGTGTTGAG+TGG | - | chr2.2:53847859-53847878 | MS.gene071835:intron | 35.0% | |
| TTTCGAGCTATCGTTTACTA+TGG | + | chr2.2:53849109-53849128 | None:intergenic | 35.0% | |
| ! | AACGATTGCAACAAAGTATC+AGG | + | chr2.2:53849021-53849040 | None:intergenic | 35.0% |
| ! | ATTTGTGGACACTTTGTTTG+AGG | - | chr2.2:53849411-53849430 | MS.gene071835:CDS | 35.0% |
| ! | TACTGTCAGACTACATGTTT+TGG | + | chr2.2:53849579-53849598 | None:intergenic | 35.0% |
| ! | TTCGTGGAAAGGTATGTATA+TGG | - | chr2.2:53849135-53849154 | MS.gene071835:intron | 35.0% |
| ! | TTGCAACAAAGTATCAGGTT+CGG | + | chr2.2:53849016-53849035 | None:intergenic | 35.0% |
| !! | AGCATCCATTTCTAAAGCAA+AGG | + | chr2.2:53849184-53849203 | None:intergenic | 35.0% |
| !!! | GGATTCGCTACTTTTAAGAT+GGG | + | chr2.2:53847825-53847844 | None:intergenic | 35.0% |
| !!! | GGTTGGTGTTTCTTTGTTTT+TGG | - | chr2.2:53848221-53848240 | MS.gene071835:intron | 35.0% |
| !!! | TGGCATTGGTTATACTTTTC+AGG | - | chr2.2:53848274-53848293 | MS.gene071835:intron | 35.0% |
| AAAAGTAGCGAATCCGGATA+TGG | - | chr2.2:53847830-53847849 | MS.gene071835:intron | 40.0% | |
| AAAGTAGCGAATCCGGATAT+GGG | - | chr2.2:53847831-53847850 | MS.gene071835:intron | 40.0% | |
| AACCGGATCGAGAATAGTAA+CGG | + | chr2.2:53847002-53847021 | None:intergenic | 40.0% | |
| AAGTTTACGTGCAGCGTAAA+AGG | - | chr2.2:53848884-53848903 | MS.gene071835:intron | 40.0% | |
| AGAAACACCAACCATGACAA+TGG | + | chr2.2:53848214-53848233 | None:intergenic | 40.0% | |
| ATCCTCTTCAAGCTAACACT+GGG | - | chr2.2:53847250-53847269 | MS.gene071835:intron | 40.0% | |
| ATGTAGTCTGACAGTAGCTA+TGG | - | chr2.2:53849583-53849602 | MS.gene071835:intron | 40.0% | |
| ATGTATGCAGAGTAAATGGC+GGG | + | chr2.2:53849384-53849403 | None:intergenic | 40.0% | |
| CGAAAGATGATTTCGTGGAA+AGG | - | chr2.2:53849124-53849143 | MS.gene071835:intron | 40.0% | |
| GTTTACTATGGCAGCTTCAA+TGG | + | chr2.2:53849097-53849116 | None:intergenic | 40.0% | |
| TAGCTCGAAAGATGATTTCG+TGG | - | chr2.2:53849119-53849138 | MS.gene071835:intron | 40.0% | |
| TCAGTCTTTGTCCATTGTCA+TGG | - | chr2.2:53848200-53848219 | MS.gene071835:intron | 40.0% | |
| TCTTTGTCCATTGTCATGGT+TGG | - | chr2.2:53848204-53848223 | MS.gene071835:intron | 40.0% | |
| ! | CAAAGTATCAGGTTCGGAAT+TGG | + | chr2.2:53849010-53849029 | None:intergenic | 40.0% |
| ! | GAAGGTTTGATTTCGTGCAA+GGG | - | chr2.2:53849659-53849678 | MS.gene071835:CDS | 40.0% |
| ! | TGCACGTAAACTTCTGGTTA+TGG | + | chr2.2:53848877-53848896 | None:intergenic | 40.0% |
| !! | ATTTTAGGGGGAAAAAGGCT+TGG | - | chr2.2:53847619-53847638 | MS.gene071835:CDS | 40.0% |
| !! | TGGTGGTGGTGATGATTTAA+GGG | - | chr2.2:53847155-53847174 | MS.gene071835:intron | 40.0% |
| !!! | CGGATTCGCTACTTTTAAGA+TGG | + | chr2.2:53847826-53847845 | None:intergenic | 40.0% |
| !!! | GTTTCAGATCTGTTTTTGGG+TGG | - | chr2.2:53847111-53847130 | MS.gene071835:intron | 40.0% |
| AGAAAAGAGTTGAGGGAAGC+AGG | - | chr2.2:53848943-53848962 | MS.gene071835:intron | 45.0% | |
| AGTATCAGGTTCGGAATTGG+AGG | + | chr2.2:53849007-53849026 | None:intergenic | 45.0% | |
| ATCGAGTAGAGAAGACACGA+AGG | - | chr2.2:53849641-53849660 | MS.gene071835:intron | 45.0% | |
| CATCCTCTTCAAGCTAACAC+TGG | - | chr2.2:53847249-53847268 | MS.gene071835:intron | 45.0% | |
| GCAGGATTGCATTCTCTTCT+TGG | - | chr2.2:53848961-53848980 | MS.gene071835:intron | 45.0% | |
| GGATTGCATTCTCTTCTTGG+AGG | - | chr2.2:53848964-53848983 | MS.gene071835:intron | 45.0% | |
| TCCTCTTCAAGCTAACACTG+GGG | - | chr2.2:53847251-53847270 | MS.gene071835:intron | 45.0% | |
| TTACGCTGCACGTAAACTTC+TGG | + | chr2.2:53848883-53848902 | None:intergenic | 45.0% | |
| TTACGTGCAGCGTAAAAGGA+GGG | - | chr2.2:53848888-53848907 | MS.gene071835:intron | 45.0% | |
| TTTACGTGCAGCGTAAAAGG+AGG | - | chr2.2:53848887-53848906 | MS.gene071835:intron | 45.0% | |
| ! | AATGATGATGCTGAACCTGG+TGG | - | chr2.2:53847135-53847154 | MS.gene071835:intron | 45.0% |
| ! | CGAAGGTTTGATTTCGTGCA+AGG | - | chr2.2:53849658-53849677 | MS.gene071835:CDS | 45.0% |
| ! | GGAAATGATGATGCTGAACC+TGG | - | chr2.2:53847132-53847151 | MS.gene071835:intron | 45.0% |
| !! | GTGGTGGTGGTGATGATTTA+AGG | - | chr2.2:53847154-53847173 | MS.gene071835:intron | 45.0% |
| !!! | TAATAAAAATTGTATTTTTA+AGG | - | chr2.2:53847332-53847351 | MS.gene071835:intron | 5.0% |
| AAATCATCACCACCACCACC+AGG | + | chr2.2:53847153-53847172 | None:intergenic | 50.0% | |
| ACAAGTACAGCTTTCCGACG+AGG | - | chr2.2:53849618-53849637 | MS.gene071835:intron | 50.0% | |
| ACAGCTTCGTCACCAACAAC+TGG | + | chr2.2:53849054-53849073 | None:intergenic | 50.0% | |
| CAGCTTCGTCACCAACAACT+GGG | + | chr2.2:53849053-53849072 | None:intergenic | 50.0% | |
| CCTGCTTGTGGGCAAAAAGT+GGG | - | chr2.2:53848302-53848321 | MS.gene071835:CDS | 50.0% | |
| CGCCGTTACTATTCTCGATC+CGG | - | chr2.2:53846997-53847016 | MS.gene071835:CDS | 50.0% | |
| CGTAAAAGGAGGGTGAGGAA+AGG | - | chr2.2:53848898-53848917 | MS.gene071835:intron | 50.0% | |
| CTGCTTGTGGGCAAAAAGTG+GGG | - | chr2.2:53848303-53848322 | MS.gene071835:CDS | 50.0% | |
| CTTCAAGCTAACACTGGGGT+GGG | - | chr2.2:53847255-53847274 | MS.gene071835:intron | 50.0% | |
| CTTCTCTACTCGATCCTCGT+CGG | + | chr2.2:53849635-53849654 | None:intergenic | 50.0% | |
| TCCTGCTTGTGGGCAAAAAG+TGG | - | chr2.2:53848301-53848320 | MS.gene071835:CDS | 50.0% | |
| TCGTCGGAAAGCTGTACTTG+TGG | + | chr2.2:53849619-53849638 | None:intergenic | 50.0% | |
| TCTTCAAGCTAACACTGGGG+TGG | - | chr2.2:53847254-53847273 | MS.gene071835:intron | 50.0% | |
| TTCAGGTGTGTCCTGCTTGT+GGG | - | chr2.2:53848291-53848310 | MS.gene071835:CDS | 50.0% | |
| TTCGGAATTGGAGGAAGCTG+TGG | + | chr2.2:53848998-53849017 | None:intergenic | 50.0% | |
| TTGTGGGCAAAAAGTGGGGA+TGG | - | chr2.2:53848307-53848326 | MS.gene071835:CDS | 50.0% | |
| ! | AAATGGCGGGAACATGCATC+CGG | + | chr2.2:53849371-53849390 | None:intergenic | 50.0% |
| ! | ACCCCAGTGTTAGCTTGAAG+AGG | + | chr2.2:53847255-53847274 | None:intergenic | 50.0% |
| ! | TTTCAGGTGTGTCCTGCTTG+TGG | - | chr2.2:53848290-53848309 | MS.gene071835:CDS | 50.0% |
| GATGATGCTGAACCTGGTGG+TGG | - | chr2.2:53847138-53847157 | MS.gene071835:intron | 55.0% | |
| TGCAGCGTAAAAGGAGGGTG+AGG | - | chr2.2:53848893-53848912 | MS.gene071835:intron | 55.0% | |
| !!! | CCCACTTTTTGCCCACAAGC+AGG | + | chr2.2:53848305-53848324 | None:intergenic | 55.0% |
| !! | GATGCTGAACCTGGTGGTGG+TGG | - | chr2.2:53847141-53847160 | MS.gene071835:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 53846952 | 53849717 | 53846952 | ID=MS.gene071835 |
| chr2.2 | mRNA | 53846952 | 53849717 | 53846952 | ID=MS.gene071835.t1;Parent=MS.gene071835 |
| chr2.2 | exon | 53849651 | 53849717 | 53849651 | ID=MS.gene071835.t1.exon1;Parent=MS.gene071835.t1 |
| chr2.2 | CDS | 53849651 | 53849717 | 53849651 | ID=cds.MS.gene071835.t1;Parent=MS.gene071835.t1 |
| chr2.2 | exon | 53849397 | 53849551 | 53849397 | ID=MS.gene071835.t1.exon2;Parent=MS.gene071835.t1 |
| chr2.2 | CDS | 53849397 | 53849551 | 53849397 | ID=cds.MS.gene071835.t1;Parent=MS.gene071835.t1 |
| chr2.2 | exon | 53848277 | 53848373 | 53848277 | ID=MS.gene071835.t1.exon3;Parent=MS.gene071835.t1 |
| chr2.2 | CDS | 53848277 | 53848373 | 53848277 | ID=cds.MS.gene071835.t1;Parent=MS.gene071835.t1 |
| chr2.2 | exon | 53847524 | 53847782 | 53847524 | ID=MS.gene071835.t1.exon4;Parent=MS.gene071835.t1 |
| chr2.2 | CDS | 53847524 | 53847782 | 53847524 | ID=cds.MS.gene071835.t1;Parent=MS.gene071835.t1 |
| chr2.2 | exon | 53846952 | 53847057 | 53846952 | ID=MS.gene071835.t1.exon5;Parent=MS.gene071835.t1 |
| chr2.2 | CDS | 53846952 | 53847057 | 53846952 | ID=cds.MS.gene071835.t1;Parent=MS.gene071835.t1 |
| Gene Sequence |
| Protein sequence |
