AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051662


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051662.t1 MTR_1g017380 99.155 592 4 1 1 592 1 591 0.0 1164
MS.gene051662.t1 MTR_1g017390 98.649 592 7 1 1 592 1 591 0.0 1159
MS.gene051662.t1 MTR_4g057970 51.195 586 280 5 1 584 1 582 0.0 543
MS.gene051662.t1 MTR_4g084130 48.134 536 272 5 44 577 37 568 2.09e-170 496
MS.gene051662.t1 MTR_1g090140 45.267 581 302 5 11 586 4 573 2.96e-167 488
MS.gene051662.t1 MTR_1g090130 46.490 527 277 3 48 573 34 556 4.46e-162 475
MS.gene051662.t1 MTR_8g017080 43.297 552 299 5 46 586 27 575 1.93e-149 443
MS.gene051662.t1 MTR_4g084130 47.912 455 234 3 125 577 3 456 1.43e-143 424
MS.gene051662.t1 MTR_0991s0010 96.894 161 5 0 26 186 25 185 3.99e-102 307
MS.gene051662.t1 MTR_5g087560 23.252 572 329 22 65 591 30 536 4.34e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051662.t1 AT1G55490 90.811 555 50 1 37 591 46 599 0.0 1005
MS.gene051662.t1 AT1G55490 90.811 555 50 1 37 591 46 599 0.0 1005
MS.gene051662.t1 AT1G55490 90.811 555 50 1 37 591 46 599 0.0 1005
MS.gene051662.t1 AT1G55490 90.811 555 50 1 37 591 46 599 0.0 1005
MS.gene051662.t1 AT1G55490 90.811 555 50 1 37 591 46 599 0.0 1005
MS.gene051662.t1 AT3G13470 89.910 555 55 1 37 591 42 595 0.0 1001
MS.gene051662.t1 AT5G56500 89.408 557 57 2 37 592 42 597 0.0 993
MS.gene051662.t1 AT5G56500 89.408 557 57 2 37 592 42 597 0.0 993
MS.gene051662.t1 AT1G26230 66.318 573 192 1 13 584 4 576 0.0 782
MS.gene051662.t1 AT1G26230 68.593 519 163 0 66 584 6 524 0.0 746
MS.gene051662.t1 AT1G26230 68.932 515 160 0 70 584 2 516 0.0 745
MS.gene051662.t1 AT1G26230 64.833 509 178 1 13 520 4 512 0.0 674
MS.gene051662.t1 AT1G26230 64.237 439 156 1 13 450 4 442 0.0 577
MS.gene051662.t1 AT2G28000 51.583 537 255 4 37 572 37 569 0.0 528
MS.gene051662.t1 AT2G33210 46.346 561 291 6 22 579 9 562 8.08e-167 488
MS.gene051662.t1 AT3G23990 45.280 572 296 5 8 578 5 560 8.05e-166 485
MS.gene051662.t1 AT2G33210 46.168 561 287 7 22 579 9 557 4.84e-163 478
MS.gene051662.t1 AT3G13860 44.991 569 296 7 27 592 18 572 4.79e-156 459
MS.gene051662.t1 AT5G18820 46.561 567 290 9 18 579 7 565 9.68e-156 459
MS.gene051662.t1 AT5G18820 46.943 458 239 4 125 579 3 459 1.60e-127 383
MS.gene051662.t1 AT5G18820 45.455 385 206 3 44 427 31 412 5.12e-103 319
MS.gene051662.t1 AT3G11830 23.105 554 310 21 65 566 30 519 2.30e-11 67.0
MS.gene051662.t1 AT3G11830 23.022 556 310 21 65 566 30 521 4.80e-11 65.9

Find 150 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCCATGGCTGAGACTTT+AGG 0.154088 1.3:+5193804 None:intergenic
TCCTCTGCAATTATCAAAAT+AGG 0.166829 1.3:+5191114 None:intergenic
TGGCCATGGCTGAGACTTTA+GGG 0.222791 1.3:+5193805 None:intergenic
AACTACTACCTCTGTTGTTT+TGG 0.233024 1.3:-5192923 MS.gene051662:CDS
TGAGAATATTGGTGCTAAAT+TGG 0.241648 1.3:-5192989 MS.gene051662:CDS
GCACTTAAGGCTCCTGGATT+TGG 0.266390 1.3:-5191027 MS.gene051662:CDS
AACTATTGTGGTTGTATCTT+TGG 0.272759 1.3:+5190746 None:intergenic
AATCTATAAATCACCTTTGT+TGG 0.276775 1.3:+5189465 None:intergenic
CTCGCTTGGTAACTGCTTCT+TGG 0.288189 1.3:+5190709 None:intergenic
TGTGAACAAGCTTGCGGATT+TGG 0.336342 1.3:-5193642 MS.gene051662:CDS
ACACCATCATTAACAATCTT+AGG 0.351092 1.3:+5193560 None:intergenic
CCTGGTGAGAGCGACGTTGC+TGG 0.360381 1.3:+5193839 None:intergenic
TTTAGGGCTCCGATTCTTCC+TGG 0.368398 1.3:+5193821 None:intergenic
TGGCGGTGTGGCTGTAATTC+AGG 0.378807 1.3:-5190298 MS.gene051662:intron
CCTCTGCAATTATCAAAATA+GGG 0.385162 1.3:+5191115 None:intergenic
CTGTGTTGTTGTTGAGATAA+AGG 0.387501 1.3:-5187955 MS.gene051662:CDS
TCGCTTGGTAACTGCTTCTT+GGG 0.387602 1.3:+5190710 None:intergenic
GTTGTTCTTGAGAGCAAGTA+TGG 0.388399 1.3:-5193587 MS.gene051662:CDS
TGGTGTTACTCTTGGTCCTA+AGG 0.393067 1.3:-5193618 MS.gene051662:CDS
ACTGAAGATTGCAGCACTTA+AGG 0.394593 1.3:-5191040 MS.gene051662:CDS
TACGGATATAATGCTGCAAC+TGG 0.399922 1.3:-5189525 MS.gene051662:CDS
CTTGTTGTGAACAAACTTAG+AGG 0.403832 1.3:-5191066 MS.gene051662:CDS
AGCCGCCAAGACAAATGATT+TGG 0.408630 1.3:-5192956 MS.gene051662:CDS
GGTAACCCAATGGACAATTC+AGG 0.411976 1.3:-5187912 MS.gene051662:intron
GGATATTGAACAAGAAGCTT+TGG 0.413311 1.3:-5191094 MS.gene051662:CDS
AAAGCTGGGAATGAGGTTCT+AGG 0.414128 1.3:-5190792 MS.gene051662:CDS
GTTGAGGAGGGTATTGTAGT+TGG 0.422734 1.3:-5190007 MS.gene051662:CDS
GATGATATTGCCATCTTGAC+AGG 0.432753 1.3:-5190982 MS.gene051662:CDS
TTAGCACCAATATTCTCAAC+TGG 0.436766 1.3:+5192994 None:intergenic
GAGGATCCAGTTGAGAATAT+TGG 0.438153 1.3:-5193000 MS.gene051662:CDS
TTGTCCATTGGGTTACCAAC+AGG 0.439504 1.3:+5187918 None:intergenic
TATGAAGATTTAATGTCGGC+TGG 0.440375 1.3:-5189498 MS.gene051662:CDS
TACATACCTGAATTGTCCAT+TGG 0.446386 1.3:+5187906 None:intergenic
GAGGGTATTGTAGTTGGCGG+TGG 0.446592 1.3:-5190001 MS.gene051662:CDS
GTTGAGTAAGGTTGGTAGAA+AGG 0.446649 1.3:-5191446 MS.gene051662:CDS
TGGTGCTAAATTGGTTAGAC+AGG 0.448444 1.3:-5192980 MS.gene051662:CDS
CTCACTGTCTGTAACAAAGT+AGG 0.452915 1.3:+5191336 None:intergenic
ATTGCAGCACTTAAGGCTCC+TGG 0.453971 1.3:-5191033 MS.gene051662:CDS
GGACTTAGCTTAGACAAAGC+TGG 0.456634 1.3:-5190807 MS.gene051662:CDS
CTTAATTTGTGAAACTCGCT+TGG 0.457406 1.3:+5190695 None:intergenic
ACAAATTAAGAACCAAATTG+AGG 0.459257 1.3:-5190682 MS.gene051662:intron
GCCTGCCAAATCATTTGTCT+TGG 0.460705 1.3:+5192951 None:intergenic
TCTTATTGCAGAAGGTGTTA+AGG 0.461521 1.3:-5192893 MS.gene051662:intron
GAAAGGATTGCAAAACTGTC+TGG 0.467114 1.3:-5190318 MS.gene051662:CDS
TTTGTTGAAATACAACTCCT+TGG 0.469848 1.3:+5193785 None:intergenic
GAAAGATTAAGTCACCTTTG+TGG 0.473592 1.3:+5190099 None:intergenic
GAGTTGTATTTCAACAAAGA+TGG 0.475978 1.3:-5193780 MS.gene051662:CDS
GATTTGGTTGGTGTTACTCT+TGG 0.477460 1.3:-5193626 MS.gene051662:CDS
TTCTGCGGGCGGAAGAAGAT+GGG 0.478610 1.3:+5193868 None:intergenic
GACTTAGCTTAGACAAAGCT+GGG 0.483882 1.3:-5190806 MS.gene051662:CDS
GATAGCTGAGGCGTTGAGTA+AGG 0.484566 1.3:-5191458 MS.gene051662:CDS
CCAGGTGGTCAGATGTTGCT+TGG 0.488161 1.3:-5188018 MS.gene051662:intron
TAAACAAACACACACCTCTC+TGG 0.488579 1.3:+5193529 None:intergenic
AAAGATACAACCACAATAGT+TGG 0.489610 1.3:-5190744 MS.gene051662:CDS
GCAGGTTGAGGATAGTGAAT+TGG 0.491700 1.3:-5191530 MS.gene051662:intron
ATCAAAGGTGGATGCAATCA+AGG 0.491996 1.3:-5189957 MS.gene051662:CDS
CTTTCAGGCCGCTGTTGAGG+AGG 0.494985 1.3:-5190020 MS.gene051662:intron
GTTAATAAGATCCCTTGCAT+TGG 0.496312 1.3:+5191167 None:intergenic
TGGCAATATCATCAAGGTAC+TGG 0.496736 1.3:+5190992 None:intergenic
CTCTTGCGTTCTCCAAATCC+AGG 0.496984 1.3:+5191015 None:intergenic
TGCCAAATCATTTGTCTTGG+CGG 0.501395 1.3:+5192954 None:intergenic
TCGCTCTCACCAGGAAGAAT+CGG 0.502728 1.3:-5193830 MS.gene051662:CDS
TTACTTTCAGGCCGCTGTTG+AGG 0.503371 1.3:-5190023 MS.gene051662:intron
AGAAGATGGGAATGAAGAAA+TGG 0.505552 1.3:+5193881 None:intergenic
ACATACCTGAATTGTCCATT+GGG 0.507022 1.3:+5187907 None:intergenic
GGTGTTACTCTTGGTCCTAA+GGG 0.507915 1.3:-5193617 MS.gene051662:CDS
TTTGCTCAGACTTGCATCAA+AGG 0.510939 1.3:-5189972 MS.gene051662:CDS
TGCAGAACAAGATTATGAAA+AGG 0.511288 1.3:-5190352 MS.gene051662:CDS
AGGGTATTGTAGTTGGCGGT+GGG 0.514410 1.3:-5190000 MS.gene051662:CDS
TTACCAACAGGTGCAGCCTC+AGG 0.516329 1.3:+5187930 None:intergenic
TTGAGTAAGGTTGGTAGAAA+GGG 0.519613 1.3:-5191445 MS.gene051662:CDS
ACAAATGATTTGGCAGGCGA+TGG 0.521838 1.3:-5192946 MS.gene051662:CDS
TCTCCTAAGATTGTTAATGA+TGG 0.522934 1.3:-5193563 MS.gene051662:CDS
CTTAGACAAAGCTGGGAATG+AGG 0.523660 1.3:-5190799 MS.gene051662:CDS
TCACTGTCTGTAACAAAGTA+GGG 0.525001 1.3:+5191337 None:intergenic
GGTTCTAGGCACTGCGGCCA+AGG 0.525331 1.3:-5190778 MS.gene051662:CDS
TTTCTGCGGGCGGAAGAAGA+TGG 0.527764 1.3:+5193867 None:intergenic
ATACCACGTGTGATAAGCAC+AGG 0.529277 1.3:+5192741 None:intergenic
TCCGTATCTCGTATCGTCGT+TGG 0.531135 1.3:+5189542 None:intergenic
CCAGCAACGTCGCTCTCACC+AGG 0.531654 1.3:-5193839 MS.gene051662:CDS
GCCAAGACAAATGATTTGGC+AGG 0.531683 1.3:-5192952 MS.gene051662:CDS
ATCTTTGGTGAGCACCACCT+TGG 0.533468 1.3:+5190761 None:intergenic
AGAACAACATTCCTTCCCTT+AGG 0.535555 1.3:+5193602 None:intergenic
GATGTGGCAGCAGTTAGTGC+AGG 0.549028 1.3:-5191505 MS.gene051662:CDS
TTATAAACCTCCTGTCAAGA+TGG 0.550939 1.3:+5190972 None:intergenic
AAATGGCAGCGGAGGAAGAG+AGG 0.551209 1.3:+5193898 None:intergenic
GCTCAAGGTCTTATTGCAGA+AGG 0.554354 1.3:-5192901 MS.gene051662:CDS
ACTTCCATCACCAACTATTG+TGG 0.557957 1.3:+5190734 None:intergenic
CTAGAGGACGCAATTAGAAA+CGG 0.558599 1.3:-5191141 MS.gene051662:CDS
GAGGAGGGTATTGTAGTTGG+CGG 0.560061 1.3:-5190004 MS.gene051662:CDS
AAAAGGAGAAGCTGAACGAA+AGG 0.560321 1.3:-5190335 MS.gene051662:CDS
AAGAGAGGTTGCATGAGGAG+AGG 0.563023 1.3:+5193913 None:intergenic
TTTCAGGCCGCTGTTGAGGA+GGG 0.565478 1.3:-5190019 MS.gene051662:intron
ATGAAGATTTAATGTCGGCT+GGG 0.566175 1.3:-5189497 MS.gene051662:CDS
AAACAATCTGTATGTTGTTG+AGG 0.570389 1.3:-5191389 MS.gene051662:CDS
AACAATCTGTATGTTGTTGA+GGG 0.571719 1.3:-5191388 MS.gene051662:CDS
GAACCTGAGGCTGCACCTGT+TGG 0.571946 1.3:-5187933 MS.gene051662:CDS
AAAATATGAAGATTTAATGT+CGG 0.572459 1.3:-5189502 MS.gene051662:CDS
ACTTAAACTAATGTCAAAAG+AGG 0.575994 1.3:-5192688 MS.gene051662:intron
AACAAGCTTGCGGATTTGGT+TGG 0.576745 1.3:-5193638 MS.gene051662:CDS
TTCCGCTATCAAGAAACTCC+AGG 0.579355 1.3:-5193757 MS.gene051662:intron
TGCAAAACTGTCTGGCGGTG+TGG 0.580627 1.3:-5190310 MS.gene051662:CDS
GCTGAGGCGTTGAGTAAGGT+TGG 0.581310 1.3:-5191454 MS.gene051662:CDS
TGGCAGTGTTGTTAGTGAGA+AGG 0.588442 1.3:-5189654 MS.gene051662:intron
TCCAACGACGATACGAGATA+CGG 0.590192 1.3:-5189543 MS.gene051662:CDS
TAAAGTCTCAGCCATGGCCA+AGG 0.591758 1.3:-5193802 MS.gene051662:CDS
TCTAGGCACTGCGGCCAAGG+TGG 0.592690 1.3:-5190775 MS.gene051662:CDS
TTACTCTTGGTCCTAAGGGA+AGG 0.596314 1.3:-5193613 MS.gene051662:CDS
ACAACCACAATAGTTGGTGA+TGG 0.599514 1.3:-5190738 MS.gene051662:CDS
GCAGGGAACAATCATGAGGT+AGG 0.602361 1.3:-5191487 MS.gene051662:CDS
CACCTGGAGTTTCTTGATAG+CGG 0.605493 1.3:+5193755 None:intergenic
TCAAGATGGCAATATCATCA+AGG 0.606055 1.3:+5190986 None:intergenic
TCGTGACACTTGAGGAGGGA+AGG 0.606314 1.3:-5191420 MS.gene051662:CDS
GCTCAGACTTGCATCAAAGG+TGG 0.608186 1.3:-5189969 MS.gene051662:CDS
GATATTGCCATCTTGACAGG+AGG 0.609386 1.3:-5190979 MS.gene051662:intron
GAAATACAACTCCTTGGCCA+TGG 0.609599 1.3:+5193791 None:intergenic
GGAAAAGAAATTGAGAGTTG+AGG 0.612753 1.3:-5190134 MS.gene051662:CDS
CTTGCAGTTCTCAAATTCAA+CGG 0.614107 1.3:+5191306 None:intergenic
ACAAACTGAGACAGAACTCA+AGG 0.620054 1.3:-5190155 MS.gene051662:CDS
ACTGTTATCAGAGAGGAGGT+TGG 0.622682 1.3:-5190828 MS.gene051662:CDS
GAATGAAGAAATGGCAGCGG+AGG 0.629838 1.3:+5193890 None:intergenic
TGGGAATGAAGAAATGGCAG+CGG 0.632892 1.3:+5193887 None:intergenic
GGATAGTGAATTGGCTGATG+TGG 0.636323 1.3:-5191521 MS.gene051662:CDS
GAGCCCTAAAGTCTCAGCCA+TGG 0.644700 1.3:-5193808 MS.gene051662:CDS
TACAATACCCTCCTCAACAG+CGG 0.645508 1.3:+5190012 None:intergenic
AACCCTGTGCTTATCACACG+TGG 0.648183 1.3:-5192744 MS.gene051662:CDS
AGGTACTGTTATCAGAGAGG+AGG 0.651028 1.3:-5190832 MS.gene051662:CDS
TGCACCTGTTGGTAACCCAA+TGG 0.655339 1.3:-5187922 MS.gene051662:CDS
GGGTGTCGTGACACTTGAGG+AGG 0.655940 1.3:-5191425 MS.gene051662:CDS
GGAGGAAGAGAGGTTGCATG+AGG 0.656006 1.3:+5193908 None:intergenic
GGAGAGGTTGCATGATGCCA+TGG 0.657034 1.3:+5193929 None:intergenic
GAGGGCATGCAATTTGATCG+AGG 0.658220 1.3:-5191370 MS.gene051662:CDS
ATGTGGCAGCAGTTAGTGCA+GGG 0.658714 1.3:-5191504 MS.gene051662:CDS
AAAGGGTGTCGTGACACTTG+AGG 0.659317 1.3:-5191428 MS.gene051662:CDS
GGTGAGAGCGACGTTGCTGG+TGG 0.659437 1.3:+5193842 None:intergenic
GGTGTCGTGACACTTGAGGA+GGG 0.659758 1.3:-5191424 MS.gene051662:CDS
GAATGGTGTGAACAAGCTTG+CGG 0.665076 1.3:-5193648 MS.gene051662:CDS
GGATCTTATTAACATACTAG+AGG 0.670020 1.3:-5191157 MS.gene051662:CDS
TGGTGTCACTGTTGCCAGAG+AGG 0.672652 1.3:-5193543 MS.gene051662:intron
TGGGATCATTGATCCAACAA+AGG 0.675402 1.3:-5189478 MS.gene051662:intron
AGGATTGCAAAACTGTCTGG+CGG 0.685391 1.3:-5190315 MS.gene051662:CDS
GGTAGGAAATATGATAGCTG+AGG 0.689740 1.3:-5191470 MS.gene051662:CDS
GGACGCTCTTAATGCCACAA+AGG 0.695512 1.3:-5190113 MS.gene051662:intron
CGTTGAATTTGAGAACTGCA+AGG 0.697779 1.3:-5191305 MS.gene051662:intron
TACAGGTACTGTTATCAGAG+AGG 0.700067 1.3:-5190835 MS.gene051662:intron
TAGTGCAGGGAACAATCATG+AGG 0.700989 1.3:-5191491 MS.gene051662:CDS
TGTTGAGATAAAGGAACCTG+AGG 0.713419 1.3:-5187946 MS.gene051662:CDS
ACCTTGAGCCAAAACAACAG+AGG 0.725524 1.3:+5192915 None:intergenic
TACCACGTGTGATAAGCACA+GGG 0.757852 1.3:+5192742 None:intergenic
GAATGAGGTTCTAGGCACTG+CGG 0.821029 1.3:-5190784 MS.gene051662:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG + chr1.3:5189394-5189413 None:intergenic 0.0%
!!! AAAACTATGATTTTAAATAT+TGG - chr1.3:5193853-5193872 MS.gene051662:CDS 10.0%
!!! AAACTATGATTTTAAATATT+GGG - chr1.3:5193854-5193873 MS.gene051662:CDS 10.0%
!!! TATAAATGTATTTTTGAATA+GGG + chr1.3:5192494-5192513 None:intergenic 10.0%
!! AAAATATGAAGATTTAATGT+CGG - chr1.3:5191972-5191991 MS.gene051662:intron 15.0%
!! AATTTCCTTAAAAAAAATTG+TGG - chr1.3:5192627-5192646 MS.gene051662:intron 15.0%
!! ACTATTAATGTAAAAAACAT+AGG + chr1.3:5189828-5189847 None:intergenic 15.0%
!! ATAACTTTATAATTAAAACG+TGG - chr1.3:5191721-5191740 MS.gene051662:intron 15.0%
!! TCCATTATTAATTAATAACA+CGG + chr1.3:5193621-5193640 None:intergenic 15.0%
!!! AAAAAAAAAAAAACTGACTT+TGG + chr1.3:5189310-5189329 None:intergenic 15.0%
!!! AATAAACAATGGTATTTTTT+TGG + chr1.3:5193775-5193794 None:intergenic 15.0%
!!! AGAGTGAAATTTTATTTTAT+AGG - chr1.3:5188690-5188709 MS.gene051662:intron 15.0%
!!! ATAAATGTATTTTTGAATAG+GGG + chr1.3:5192493-5192512 None:intergenic 15.0%
!!! GTATAAATGTATTTTTGAAT+AGG + chr1.3:5192495-5192514 None:intergenic 15.0%
!!! GTTTTTGTAAATAAATAGTT+AGG - chr1.3:5189626-5189645 MS.gene051662:intron 15.0%
!!! GTTTTTTTAGATTGATTAAT+TGG - chr1.3:5189648-5189667 MS.gene051662:intron 15.0%
!!! TTAAAAAATGCGAAATATTT+TGG - chr1.3:5190917-5190936 MS.gene051662:intron 15.0%
!!! TTCTTTTTTATGAATTGAAA+TGG - chr1.3:5189413-5189432 MS.gene051662:intron 15.0%
!!! TTTACTTGAATTATTGTTTT+AGG - chr1.3:5188231-5188250 MS.gene051662:intron 15.0%
!!! TTTACTTGAATTATTGTTTT+TGG - chr1.3:5188231-5188250 MS.gene051662:intron 15.0%
!!! TTTTAGTGAATTAATAATGT+GGG - chr1.3:5188402-5188421 MS.gene051662:intron 15.0%
!!! TTTTTAGTGAATTAATAATG+TGG - chr1.3:5188401-5188420 MS.gene051662:intron 15.0%
!! AAAAAAAGTCTACATTATAC+AGG - chr1.3:5191047-5191066 MS.gene051662:CDS 20.0%
!! AAAAATATCTCCATATAAAG+GGG + chr1.3:5191614-5191633 None:intergenic 20.0%
!! AAAATGTCTACATATTCTAT+AGG - chr1.3:5191098-5191117 MS.gene051662:CDS 20.0%
!! AAATTAATAGCAAAAAATGC+TGG - chr1.3:5191791-5191810 MS.gene051662:intron 20.0%
!! AAGCAAAGGAAAAAAAAAAT+TGG + chr1.3:5189075-5189094 None:intergenic 20.0%
!! AAGTTTAAATGAAAAAGATG+AGG + chr1.3:5189900-5189919 None:intergenic 20.0%
!! ACTAGAACATAAAATAAATC+AGG + chr1.3:5193258-5193277 None:intergenic 20.0%
!! AGTTTAAATGAAAAAGATGA+GGG + chr1.3:5189899-5189918 None:intergenic 20.0%
!! GAAAAATATCTCCATATAAA+GGG + chr1.3:5191615-5191634 None:intergenic 20.0%
!! TATAAAGTTATAATCAGTGT+CGG + chr1.3:5191712-5191731 None:intergenic 20.0%
!! TATAATATCATCATCACATT+CGG - chr1.3:5192784-5192803 MS.gene051662:intron 20.0%
!! TTCCTTAGAAAAATTGTATT+TGG - chr1.3:5192241-5192260 MS.gene051662:intron 20.0%
!! TTTAGTGAATTAATAATGTG+GGG - chr1.3:5188403-5188422 MS.gene051662:intron 20.0%
!!! AAAAAATTAGCCTTCAATTA+TGG - chr1.3:5189445-5189464 MS.gene051662:intron 20.0%
!!! AAAAATTAGCCTTCAATTAT+GGG - chr1.3:5189446-5189465 MS.gene051662:intron 20.0%
!!! AACTTATGTAACTTGTATAT+TGG - chr1.3:5191899-5191918 MS.gene051662:intron 20.0%
!!! ACCGTGTTATTAATTAATAA+TGG - chr1.3:5193617-5193636 MS.gene051662:CDS 20.0%
!!! ATTTATTTTGTCTGAGTTTA+GGG - chr1.3:5188200-5188219 MS.gene051662:intron 20.0%
!!! ATTTTTATTACACGTGTTAT+GGG - chr1.3:5188846-5188865 MS.gene051662:intron 20.0%
!!! CATTATAAATGGTTTGTATA+TGG - chr1.3:5192133-5192152 MS.gene051662:intron 20.0%
!!! CTTGTGTTTTGATTAAATTT+TGG - chr1.3:5192160-5192179 MS.gene051662:intron 20.0%
!!! TAAAATTTCACTCTAAAATG+AGG + chr1.3:5188684-5188703 None:intergenic 20.0%
!!! TAAATTAAACTTAGCTTGTA+GGG - chr1.3:5192103-5192122 MS.gene051662:intron 20.0%
!!! TAAGCAAAAATTCACTTTTT+AGG + chr1.3:5192926-5192945 None:intergenic 20.0%
!!! TACATCCACAATTTTTTTTA+AGG + chr1.3:5192635-5192654 None:intergenic 20.0%
!!! TATTTATTTTGTCTGAGTTT+AGG - chr1.3:5188199-5188218 MS.gene051662:intron 20.0%
!!! TTCACTTGAATTATTGTTTT+TGG - chr1.3:5188053-5188072 MS.gene051662:intron 20.0%
!!! TTTTAAAAACTGACAATAAG+AGG + chr1.3:5192557-5192576 None:intergenic 20.0%
!!! TTTTAGTGAATTAGTTATGT+GGG - chr1.3:5188130-5188149 MS.gene051662:intron 20.0%
!!! TTTTTAGTGAATTAGTTATG+TGG - chr1.3:5188129-5188148 MS.gene051662:intron 20.0%
!!! TTTTTGCTATTAATTTCAGA+GGG + chr1.3:5191787-5191806 None:intergenic 20.0%
!!! TTTTTGCTTATATTTGTGAT+CGG + chr1.3:5192827-5192846 None:intergenic 20.0%
!!! TTTTTTCTCAATTAGATGTA+GGG - chr1.3:5189220-5189239 MS.gene051662:intron 20.0%
!!! TTTTTTGCTATTAATTTCAG+AGG + chr1.3:5191788-5191807 None:intergenic 20.0%
!!! TTTTTTTCTCAATTAGATGT+AGG - chr1.3:5189219-5189238 MS.gene051662:intron 20.0%
! AAAATATCTCCATATAAAGG+GGG + chr1.3:5191613-5191632 None:intergenic 25.0%
! AAACAAACAGACTATTAATG+TGG - chr1.3:5193223-5193242 MS.gene051662:intron 25.0%
! AACAAACAGACTATTAATGT+GGG - chr1.3:5193224-5193243 MS.gene051662:intron 25.0%
! AAGAAATGATAATCAATGAG+GGG - chr1.3:5189147-5189166 MS.gene051662:intron 25.0%
! AATCTATAAATCACCTTTGT+TGG + chr1.3:5192012-5192031 None:intergenic 25.0%
! ACAAACCATTTATAATGATG+CGG + chr1.3:5192130-5192149 None:intergenic 25.0%
! ACAAATTAAGAACCAAATTG+AGG - chr1.3:5190792-5190811 MS.gene051662:CDS 25.0%
! ACATCACAGAATTAAAAAAC+AGG + chr1.3:5187977-5187996 None:intergenic 25.0%
! ACTAAACCAAATTTATGGTT+CGG - chr1.3:5189260-5189279 MS.gene051662:intron 25.0%
! ACTTAAACTAATGTCAAAAG+AGG - chr1.3:5188786-5188805 MS.gene051662:intron 25.0%
! AGAGTAATAGGAATAAACAA+TGG + chr1.3:5193786-5193805 None:intergenic 25.0%
! ATATACAAGTGCATCTAAAT+AGG + chr1.3:5189716-5189735 None:intergenic 25.0%
! ATTCTATGACGATTCTTAAA+AGG - chr1.3:5193309-5193328 MS.gene051662:intron 25.0%
! ATTTAAACTTAGAAGAGTTG+TGG - chr1.3:5189910-5189929 MS.gene051662:intron 25.0%
! CAGATTTGTAAATTATGAAG+TGG - chr1.3:5189486-5189505 MS.gene051662:CDS 25.0%
! CATGAACTAAACCAAATTTA+TGG - chr1.3:5189255-5189274 MS.gene051662:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - chr1.3:5192862-5192881 MS.gene051662:intron 25.0%
! CCTTAAAATTCAAGATTCTT+AGG + chr1.3:5193831-5193850 None:intergenic 25.0%
! CGAAAAATATCTCCATATAA+AGG + chr1.3:5191616-5191635 None:intergenic 25.0%
! CTGTGTAATTCGTATATTAA+TGG + chr1.3:5192712-5192731 None:intergenic 25.0%
! CTTAGAAAAATTGTATTTGG+AGG - chr1.3:5192244-5192263 MS.gene051662:intron 25.0%
! GAAATTATGAAGAGAGAAAT+AGG - chr1.3:5192338-5192357 MS.gene051662:intron 25.0%
! GAAGAAATGATAATCAATGA+GGG - chr1.3:5189146-5189165 MS.gene051662:intron 25.0%
! GTATAAGAAATGAAAGCAAA+GGG - chr1.3:5193010-5193029 MS.gene051662:CDS 25.0%
! TAAACCAAAAAAGGAACAAA+GGG + chr1.3:5190584-5190603 None:intergenic 25.0%
! TAAGTAACTAATAATGTGCT+TGG - chr1.3:5188627-5188646 MS.gene051662:intron 25.0%
! TAATTTCAACCCATAATTGA+AGG + chr1.3:5189458-5189477 None:intergenic 25.0%
! TATACAAGTGCATCTAAATA+GGG + chr1.3:5189715-5189734 None:intergenic 25.0%
! TGAAGAAATGATAATCAATG+AGG - chr1.3:5189145-5189164 MS.gene051662:intron 25.0%
! TGGCAAAGATAATAATAAGT+TGG + chr1.3:5190217-5190236 None:intergenic 25.0%
! TGTATAAGAAATGAAAGCAA+AGG - chr1.3:5193009-5193028 MS.gene051662:CDS 25.0%
! TGTTTACATTTGCGTTAAAA+AGG - chr1.3:5188443-5188462 MS.gene051662:intron 25.0%
! TTACTTATTCTTCATGTACA+AGG + chr1.3:5190889-5190908 None:intergenic 25.0%
! TTTAGTGAATTAGTTATGTG+GGG - chr1.3:5188131-5188150 MS.gene051662:intron 25.0%
!! ATCTTTTTGTAAAACGTTGT+TGG - chr1.3:5193887-5193906 MS.gene051662:CDS 25.0%
!! ATGGAGATATTTTTCGTTTT+AGG - chr1.3:5191620-5191639 MS.gene051662:intron 25.0%
!! CATTTTTATTACACGTGTTA+TGG - chr1.3:5188845-5188864 MS.gene051662:intron 25.0%
!! CCTAAGAATCTTGAATTTTA+AGG - chr1.3:5193828-5193847 MS.gene051662:CDS 25.0%
!! CTCCAAATACAATTTTTCTA+AGG + chr1.3:5192246-5192265 None:intergenic 25.0%
!! GTTTATTGTTTCTCAAAACT+GGG + chr1.3:5189570-5189589 None:intergenic 25.0%
!! TAAGTAAAAACACAAGTTGA+TGG + chr1.3:5190237-5190256 None:intergenic 25.0%
!! TATGTAACTTGTATATTGGT+AGG - chr1.3:5191903-5191922 MS.gene051662:intron 25.0%
!! TCATTAATTCATCCTTTTAC+CGG - chr1.3:5191407-5191426 MS.gene051662:CDS 25.0%
!! TTTATTGTTTCTCAAAACTG+GGG + chr1.3:5189569-5189588 None:intergenic 25.0%
!! TTTTATAAACCCGTTCAATT+TGG - chr1.3:5189327-5189346 MS.gene051662:intron 25.0%
!! TTTTGGTGAATTAGTTATGT+GGG - chr1.3:5188248-5188267 MS.gene051662:intron 25.0%
!! TTTTTCTCAATTAGATGTAG+GGG - chr1.3:5189221-5189240 MS.gene051662:intron 25.0%
!! TTTTTCTTCATCATTTGCAA+GGG + chr1.3:5191546-5191565 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr1.3:5192936-5192955 MS.gene051662:CDS 25.0%
!!! AGTAGATTTGAAGTATTGTT+TGG - chr1.3:5192401-5192420 MS.gene051662:intron 25.0%
!!! ATGTTCTAGTTTCTTGATTA+GGG - chr1.3:5193268-5193287 MS.gene051662:intron 25.0%
!!! GTAAATTAAACTTAGCTTGT+AGG - chr1.3:5192102-5192121 MS.gene051662:intron 25.0%
!!! TATGTTCTAGTTTCTTGATT+AGG - chr1.3:5193267-5193286 MS.gene051662:intron 25.0%
!!! TTTGTGTTTTTGTTACAGAA+TGG - chr1.3:5187809-5187828 MS.gene051662:intron 25.0%
!!! TTTTAGGTGAATTAGTTATG+TGG - chr1.3:5188324-5188343 MS.gene051662:intron 25.0%
!!! TTTTTGGTGAATTAGTTATG+TGG - chr1.3:5188247-5188266 MS.gene051662:intron 25.0%
AAACAATCTGTATGTTGTTG+AGG - chr1.3:5190085-5190104 MS.gene051662:intron 30.0%
AAACTATGAGCTTATAGAAC+CGG + chr1.3:5191429-5191448 None:intergenic 30.0%
AAAGATACAACCACAATAGT+TGG - chr1.3:5190730-5190749 MS.gene051662:CDS 30.0%
AACAATCTGTATGTTGTTGA+GGG - chr1.3:5190086-5190105 MS.gene051662:intron 30.0%
AACTAATAATGTGCTTGGTT+TGG - chr1.3:5188632-5188651 MS.gene051662:intron 30.0%
AACTATTGTGGTTGTATCTT+TGG + chr1.3:5190731-5190750 None:intergenic 30.0%
AAGAGAAGAAGAAGAGAAAT+AGG - chr1.3:5192427-5192446 MS.gene051662:intron 30.0%
AAGTTATAGTTCATGTGAAC+CGG - chr1.3:5189676-5189695 MS.gene051662:CDS 30.0%
AATCATATGAATAGCAGAAG+AGG - chr1.3:5189519-5189538 MS.gene051662:CDS 30.0%
AATGCTCAATTTCTTCAGTT+TGG + chr1.3:5193157-5193176 None:intergenic 30.0%
AATTGTATTTGGAGGATGTT+AGG - chr1.3:5192252-5192271 MS.gene051662:intron 30.0%
ACAAAAAGATATCCAATGCA+AGG - chr1.3:5190295-5190314 MS.gene051662:intron 30.0%
ACAAGTCAATAACACTTTCA+AGG + chr1.3:5191647-5191666 None:intergenic 30.0%
ACACCATCATTAACAATCTT+AGG + chr1.3:5187917-5187936 None:intergenic 30.0%
AGTTTCTTGATTAGGGAAAT+TGG - chr1.3:5193275-5193294 MS.gene051662:intron 30.0%
ATACAAGTGCATCTAAATAG+GGG + chr1.3:5189714-5189733 None:intergenic 30.0%
ATCATATGAATAGCAGAAGA+GGG - chr1.3:5189520-5189539 MS.gene051662:CDS 30.0%
ATGCCATGCAAACAATATTT+AGG + chr1.3:5190851-5190870 None:intergenic 30.0%
CAAAAAGATATCCAATGCAA+GGG - chr1.3:5190296-5190315 MS.gene051662:intron 30.0%
CAAACCATTTATAATGATGC+GGG + chr1.3:5192129-5192148 None:intergenic 30.0%
CATGATTTAAGAACCTCATT+TGG + chr1.3:5192193-5192212 None:intergenic 30.0%
CATTGAATAGATGATGTATG+TGG + chr1.3:5192901-5192920 None:intergenic 30.0%
CCTCTGCAATTATCAAAATA+GGG + chr1.3:5190362-5190381 None:intergenic 30.0%
CTAAACCAAAAAAGGAACAA+AGG + chr1.3:5190585-5190604 None:intergenic 30.0%
CTCATAGTTTCTTTACTTTC+AGG - chr1.3:5191439-5191458 MS.gene051662:CDS 30.0%
GAGTTGTATTTCAACAAAGA+TGG - chr1.3:5187694-5187713 MS.gene051662:intron 30.0%
GGATCTTATTAACATACTAG+AGG - chr1.3:5190317-5190336 MS.gene051662:CDS 30.0%
GTTTCTTGATTAGGGAAATT+GGG - chr1.3:5193276-5193295 MS.gene051662:intron 30.0%
TCCTCTGCAATTATCAAAAT+AGG + chr1.3:5190363-5190382 None:intergenic 30.0%
TCTCCTAAGATTGTTAATGA+TGG - chr1.3:5187911-5187930 MS.gene051662:intron 30.0%
TGCAGAACAAGATTATGAAA+AGG - chr1.3:5191122-5191141 MS.gene051662:CDS 30.0%
TGCCATGCAAACAATATTTA+GGG + chr1.3:5190850-5190869 None:intergenic 30.0%
TTACATTTGCGTTAAAAAGG+TGG - chr1.3:5188446-5188465 MS.gene051662:intron 30.0%
TTTCTTGATTAGGGAAATTG+GGG - chr1.3:5193277-5193296 MS.gene051662:intron 30.0%
TTTGGTGAATTAGTTATGTG+GGG - chr1.3:5188249-5188268 MS.gene051662:intron 30.0%
TTTGTTGAAATACAACTCCT+TGG + chr1.3:5187692-5187711 None:intergenic 30.0%
! CGATTTTGAACCAAATTGAA+CGG + chr1.3:5189340-5189359 None:intergenic 30.0%
! CGTTCAATTTGGTTCAAAAT+CGG - chr1.3:5189338-5189357 MS.gene051662:intron 30.0%
! CTTTTTCTTCATCATTTGCA+AGG + chr1.3:5191547-5191566 None:intergenic 30.0%
! GATTTTGAACCAAATTGAAC+GGG + chr1.3:5189339-5189358 None:intergenic 30.0%
! GGTTTATTGTTTCTCAAAAC+TGG + chr1.3:5189571-5189590 None:intergenic 30.0%
!! TGAGAATATTGGTGCTAAAT+TGG - chr1.3:5188485-5188504 MS.gene051662:intron 30.0%
!! TTGCTTGTTGTTACATGATT+GGG - chr1.3:5188657-5188676 MS.gene051662:intron 30.0%
!! TTGTGTTTTGTTACGAGTAT+AGG - chr1.3:5191289-5191308 MS.gene051662:intron 30.0%
!! TTTGCTTGTTGTTACATGAT+TGG - chr1.3:5188656-5188675 MS.gene051662:intron 30.0%
!!! GTTTTTTTTCCCCCTTTATA+TGG - chr1.3:5191601-5191620 MS.gene051662:intron 30.0%
!!! TTCGTTTTTTGAGCATGATT+GGG + chr1.3:5187752-5187771 None:intergenic 30.0%
!!! TTTCGTTTTTTGAGCATGAT+TGG + chr1.3:5187753-5187772 None:intergenic 30.0%
AAAATCCTTGACCCTAAACT+CGG + chr1.3:5188096-5188115 None:intergenic 35.0%
ACAGTTACACACAGAGTAAT+AGG + chr1.3:5193798-5193817 None:intergenic 35.0%
ACATACCTGAATTGTCCATT+GGG + chr1.3:5193570-5193589 None:intergenic 35.0%
ACCAACAGCTAAACCAAAAA+AGG + chr1.3:5190593-5190612 None:intergenic 35.0%
ACGATTCTTAAAAGGCTTCT+TGG - chr1.3:5193317-5193336 MS.gene051662:intron 35.0%
ACTGAACCGAACCATAAATT+TGG + chr1.3:5189269-5189288 None:intergenic 35.0%
AGAAGATGGGAATGAAGAAA+TGG + chr1.3:5187596-5187615 None:intergenic 35.0%
AGAATAAGCAAAAAAGTGGG+AGG + chr1.3:5188881-5188900 None:intergenic 35.0%
AGACATGCTACTAAAGATAG+CGG + chr1.3:5192081-5192100 None:intergenic 35.0%
ATTAATGGCGAGCAATTTCA+AGG + chr1.3:5192697-5192716 None:intergenic 35.0%
CCATGCAAACAATATTTAGG+GGG + chr1.3:5190848-5190867 None:intergenic 35.0%
CTTGCAGTTCTCAAATTCAA+CGG + chr1.3:5190171-5190190 None:intergenic 35.0%
GAAAGATTAAGTCACCTTTG+TGG + chr1.3:5191378-5191397 None:intergenic 35.0%
GCAAAAAATGCTGGTGTAAA+TGG - chr1.3:5191800-5191819 MS.gene051662:intron 35.0%
GCCAGAATAAGCAAAAAAGT+GGG + chr1.3:5188884-5188903 None:intergenic 35.0%
GCCATGCAAACAATATTTAG+GGG + chr1.3:5190849-5190868 None:intergenic 35.0%
GGAAAAGAAATTGAGAGTTG+AGG - chr1.3:5191340-5191359 MS.gene051662:CDS 35.0%
GGATATTGAACAAGAAGCTT+TGG - chr1.3:5190380-5190399 MS.gene051662:intron 35.0%
GTTAAGCAATGTAATCCCAA+AGG + chr1.3:5188955-5188974 None:intergenic 35.0%
GTTAATAAGATCCCTTGCAT+TGG + chr1.3:5190310-5190329 None:intergenic 35.0%
GTTTAATTCGTCCGAGTTTA+GGG - chr1.3:5188082-5188101 MS.gene051662:intron 35.0%
TACATACCTGAATTGTCCAT+TGG + chr1.3:5193571-5193590 None:intergenic 35.0%
TATCTTCCTAATTCGCTTAC+AGG - chr1.3:5190622-5190641 MS.gene051662:intron 35.0%
TATGAAACACGAACACCTTT+GGG - chr1.3:5188985-5189004 MS.gene051662:intron 35.0%
TATGAAGATTTAATGTCGGC+TGG - chr1.3:5191976-5191995 MS.gene051662:intron 35.0%
TCAAGATGGCAATATCATCA+AGG + chr1.3:5190491-5190510 None:intergenic 35.0%
TCACTGTCTGTAACAAAGTA+GGG + chr1.3:5190140-5190159 None:intergenic 35.0%
TCATATGAATAGCAGAAGAG+GGG - chr1.3:5189521-5189540 MS.gene051662:CDS 35.0%
TGCTTATATTTGTGATCGGA+GGG + chr1.3:5192823-5192842 None:intergenic 35.0%
TGTTTAATTCGTCCGAGTTT+AGG - chr1.3:5188081-5188100 MS.gene051662:intron 35.0%
TTAGCACCAATATTCTCAAC+TGG + chr1.3:5188483-5188502 None:intergenic 35.0%
TTATAAACCTCCTGTCAAGA+TGG + chr1.3:5190505-5190524 None:intergenic 35.0%
TTATAATTAAAACGTGGCGC+AGG - chr1.3:5191727-5191746 MS.gene051662:intron 35.0%
TTGCTTATATTTGTGATCGG+AGG + chr1.3:5192824-5192843 None:intergenic 35.0%
TTGGTTCAAAATCGGTGAAT+TGG - chr1.3:5189346-5189365 MS.gene051662:intron 35.0%
! ATGAAGATTTAATGTCGGCT+GGG - chr1.3:5191977-5191996 MS.gene051662:intron 35.0%
! ATTAGTTATGTGGGGTGTTT+AGG - chr1.3:5188139-5188158 MS.gene051662:intron 35.0%
! ATTTTATAGGTTGTTGCAGC+TGG - chr1.3:5188703-5188722 MS.gene051662:intron 35.0%
! CTGTGTTGTTGTTGAGATAA+AGG - chr1.3:5193519-5193538 MS.gene051662:intron 35.0%
! CTTGTTGTGAACAAACTTAG+AGG - chr1.3:5190408-5190427 MS.gene051662:intron 35.0%
! CTTTCTTTTCTCCTAGGATT+CGG - chr1.3:5193920-5193939 MS.gene051662:CDS 35.0%
! TAAGAATGTTTTCGCAACAG+AGG + chr1.3:5193491-5193510 None:intergenic 35.0%
! TTAGTTATGTGGGGTGTTTA+GGG - chr1.3:5188140-5188159 MS.gene051662:intron 35.0%
!! AACTACTACCTCTGTTGTTT+TGG - chr1.3:5188551-5188570 MS.gene051662:intron 35.0%
!! CTTAATTTGTGAAACTCGCT+TGG + chr1.3:5190782-5190801 None:intergenic 35.0%
!! GTTTTGATGTTGGGTGTTTA+GGG - chr1.3:5188354-5188373 MS.gene051662:intron 35.0%
!! GTTTTGTTACGAGTATAGGT+TGG - chr1.3:5191293-5191312 MS.gene051662:intron 35.0%
!! TCTTATTGCAGAAGGTGTTA+AGG - chr1.3:5188581-5188600 MS.gene051662:intron 35.0%
!! TGCTTGTTGTTACATGATTG+GGG - chr1.3:5188658-5188677 MS.gene051662:intron 35.0%
!! TTGAGTAAGGTTGGTAGAAA+GGG - chr1.3:5190029-5190048 MS.gene051662:intron 35.0%
!!! CCCTATTTTGATAATTGCAG+AGG - chr1.3:5190359-5190378 MS.gene051662:intron 35.0%
!!! GGAGTGTTTGTTTTGATGTT+GGG - chr1.3:5188345-5188364 MS.gene051662:intron 35.0%
!!! GGTAGACTTGTTATGAGTTT+TGG - chr1.3:5188602-5188621 MS.gene051662:intron 35.0%
!!! TCCCACTTTTTTGCTTATTC+TGG - chr1.3:5188880-5188899 MS.gene051662:intron 35.0%
!!! TCCTTTTTTGGTTTAGCTGT+TGG - chr1.3:5190589-5190608 MS.gene051662:intron 35.0%
!!! TGGAGTGTTTGTTTTGATGT+TGG - chr1.3:5188344-5188363 MS.gene051662:intron 35.0%
!!! TGTTTTGATGTTGGGTGTTT+AGG - chr1.3:5188353-5188372 MS.gene051662:intron 35.0%
!!! TTCTCCCTTTGTTCCTTTTT+TGG - chr1.3:5190577-5190596 MS.gene051662:intron 35.0%
!!! TTTTGGTTTCACACCAAATG+AGG - chr1.3:5192177-5192196 MS.gene051662:intron 35.0%
AAAAGGAGAAGCTGAACGAA+AGG - chr1.3:5191139-5191158 MS.gene051662:CDS 40.0%
ACAAACTGAGACAGAACTCA+AGG - chr1.3:5191319-5191338 MS.gene051662:CDS 40.0%
ACAGTACCTGTAAGCGAATT+AGG + chr1.3:5190631-5190650 None:intergenic 40.0%
ACTCTTTGGACGTATCTATG+GGG - chr1.3:5189110-5189129 MS.gene051662:intron 40.0%
ACTGAAGATTGCAGCACTTA+AGG - chr1.3:5190434-5190453 MS.gene051662:intron 40.0%
ACTTCCATCACCAACTATTG+TGG + chr1.3:5190743-5190762 None:intergenic 40.0%
AGAACAACATTCCTTCCCTT+AGG + chr1.3:5187875-5187894 None:intergenic 40.0%
AGAGAAGGGGTAACATATAC+AGG + chr1.3:5193050-5193069 None:intergenic 40.0%
AGCGAAGAAAATGGAGAGAA+GGG + chr1.3:5193064-5193083 None:intergenic 40.0%
AGTGTAGTGTCACACATAGA+AGG + chr1.3:5193369-5193388 None:intergenic 40.0%
ATCAAAGGTGGATGCAATCA+AGG - chr1.3:5191517-5191536 MS.gene051662:CDS 40.0%
ATTCGTGCATCGTAGGTATT+AGG + chr1.3:5188931-5188950 None:intergenic 40.0%
CAACATGTCTGCATCATGTT+AGG - chr1.3:5189850-5189869 MS.gene051662:intron 40.0%
CAATTCAGGTATGTAGTGTG+CGG - chr1.3:5193576-5193595 MS.gene051662:CDS 40.0%
CACTCTTTGGACGTATCTAT+GGG - chr1.3:5189109-5189128 MS.gene051662:intron 40.0%
CCCCCTAAATATTGTTTGCA+TGG - chr1.3:5190845-5190864 MS.gene051662:intron 40.0%
CGAATCCTAGGAGAAAAGAA+AGG + chr1.3:5193922-5193941 None:intergenic 40.0%
CGCCAGAATAAGCAAAAAAG+TGG + chr1.3:5188885-5188904 None:intergenic 40.0%
CGTTGAATTTGAGAACTGCA+AGG - chr1.3:5190169-5190188 MS.gene051662:intron 40.0%
CTAAATTAGCCCACCCAAAT+TGG + chr1.3:5191013-5191032 None:intergenic 40.0%
CTAGAGGACGCAATTAGAAA+CGG - chr1.3:5190333-5190352 MS.gene051662:CDS 40.0%
CTATGAAACACGAACACCTT+TGG - chr1.3:5188984-5189003 MS.gene051662:intron 40.0%
CTCACTGTCTGTAACAAAGT+AGG + chr1.3:5190141-5190160 None:intergenic 40.0%
GAAAGGATTGCAAAACTGTC+TGG - chr1.3:5191156-5191175 MS.gene051662:CDS 40.0%
GACTTAGCTTAGACAAAGCT+GGG - chr1.3:5190668-5190687 MS.gene051662:intron 40.0%
GAGCTTATAGAACCGGTAAA+AGG + chr1.3:5191422-5191441 None:intergenic 40.0%
GAGGATCCAGTTGAGAATAT+TGG - chr1.3:5188474-5188493 MS.gene051662:intron 40.0%
GAGTTAGCAAAGAGAGAGAT+AGG + chr1.3:5193185-5193204 None:intergenic 40.0%
GATGATATTGCCATCTTGAC+AGG - chr1.3:5190492-5190511 MS.gene051662:intron 40.0%
GCTCAATTTCTTCAGTTTGG+TGG + chr1.3:5193154-5193173 None:intergenic 40.0%
GGTAGGAAATATGATAGCTG+AGG - chr1.3:5190004-5190023 MS.gene051662:CDS 40.0%
GTCCAGCAGAGAAATCAAAA+AGG - chr1.3:5193084-5193103 MS.gene051662:intron 40.0%
GTTGTTCTTGAGAGCAAGTA+TGG - chr1.3:5187887-5187906 MS.gene051662:intron 40.0%
TAAACAAACACACACCTCTC+TGG + chr1.3:5187948-5187967 None:intergenic 40.0%
TACGGATATAATGCTGCAAC+TGG - chr1.3:5191949-5191968 MS.gene051662:intron 40.0%
TGCAAACAATATTTAGGGGG+TGG + chr1.3:5190845-5190864 None:intergenic 40.0%
TGCCAAATCATTTGTCTTGG+CGG + chr1.3:5188523-5188542 None:intergenic 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr1.3:5192940-5192959 MS.gene051662:CDS 40.0%
TGGCAATATCATCAAGGTAC+TGG + chr1.3:5190485-5190504 None:intergenic 40.0%
TGGGATCATTGATCCAACAA+AGG - chr1.3:5191996-5192015 MS.gene051662:intron 40.0%
TGTTGAGATAAAGGAACCTG+AGG - chr1.3:5193528-5193547 MS.gene051662:intron 40.0%
TTCAACGAGTTCACTGAGAT+GGG + chr1.3:5191212-5191231 None:intergenic 40.0%
TTGCGTTAAAAAGGTGGAGT+TGG - chr1.3:5188452-5188471 MS.gene051662:intron 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr1.3:5192939-5192958 MS.gene051662:CDS 40.0%
TTTCAACGAGTTCACTGAGA+TGG + chr1.3:5191213-5191232 None:intergenic 40.0%
TTTGCTCAGACTTGCATCAA+AGG - chr1.3:5191502-5191521 MS.gene051662:CDS 40.0%
! ATAGGGGTGTGCATAAAAAC+CGG + chr1.3:5189698-5189717 None:intergenic 40.0%
! ATTAGATGTAGGGGTGTGAA+TGG - chr1.3:5189230-5189249 MS.gene051662:intron 40.0%
! CAATTTCTTCAGTTTGGTGG+AGG + chr1.3:5193151-5193170 None:intergenic 40.0%
! TACAGGTACTGTTATCAGAG+AGG - chr1.3:5190639-5190658 MS.gene051662:intron 40.0%
! TGGTGCTAAATTGGTTAGAC+AGG - chr1.3:5188494-5188513 MS.gene051662:intron 40.0%
!! ACAACCACAATAGTTGGTGA+TGG - chr1.3:5190736-5190755 MS.gene051662:CDS 40.0%
!! CAAAGGTGTTCGTGTTTCAT+AGG + chr1.3:5188986-5189005 None:intergenic 40.0%
!! CAGATTTGTTGAAGTGTCAC+TGG - chr1.3:5192287-5192306 MS.gene051662:intron 40.0%
!! CATCACATTCGGTTTGTTGT+GGG - chr1.3:5192795-5192814 MS.gene051662:intron 40.0%
!! GAAGTGTCACTGGACTTTTA+CGG - chr1.3:5192297-5192316 MS.gene051662:intron 40.0%
!! GATTTGGTTGGTGTTACTCT+TGG - chr1.3:5187848-5187867 MS.gene051662:intron 40.0%
!! GTTGAGTAAGGTTGGTAGAA+AGG - chr1.3:5190028-5190047 MS.gene051662:intron 40.0%
!! TCATCACATTCGGTTTGTTG+TGG - chr1.3:5192794-5192813 MS.gene051662:intron 40.0%
!!! ATATTTTGGCCTGATGGTGT+TGG - chr1.3:5190931-5190950 MS.gene051662:intron 40.0%
!!! CACCTTTTTGATTTCTCTGC+TGG + chr1.3:5193089-5193108 None:intergenic 40.0%
!!! TGCGAAATATTTTGGCCTGA+TGG - chr1.3:5190925-5190944 MS.gene051662:intron 40.0%
AAAGCTGGGAATGAGGTTCT+AGG - chr1.3:5190682-5190701 MS.gene051662:intron 45.0%
AACACACCTTAGGCACTCTT+TGG - chr1.3:5189096-5189115 MS.gene051662:intron 45.0%
AATTAAAACGTGGCGCAGGT+TGG - chr1.3:5191731-5191750 MS.gene051662:intron 45.0%
ACAATATTTAGGGGGTGGAG+AGG + chr1.3:5190840-5190859 None:intergenic 45.0%
ACCTTGAGCCAAAACAACAG+AGG + chr1.3:5188562-5188581 None:intergenic 45.0%
ACTGTTATCAGAGAGGAGGT+TGG - chr1.3:5190646-5190665 MS.gene051662:intron 45.0%
AGCCGCCAAGACAAATGATT+TGG - chr1.3:5188518-5188537 MS.gene051662:intron 45.0%
AGGATTGCAAAACTGTCTGG+CGG - chr1.3:5191159-5191178 MS.gene051662:CDS 45.0%
AGGGCCCGCATCATTATAAA+TGG - chr1.3:5192122-5192141 MS.gene051662:intron 45.0%
ATACCACGTGTGATAAGCAC+AGG + chr1.3:5188736-5188755 None:intergenic 45.0%
CACCTGGAGTTTCTTGATAG+CGG + chr1.3:5187722-5187741 None:intergenic 45.0%
CAGAAGAGGGGTTGTGAAAT+GGG - chr1.3:5189533-5189552 MS.gene051662:CDS 45.0%
CAGCGAAGAAAATGGAGAGA+AGG + chr1.3:5193065-5193084 None:intergenic 45.0%
CATAGAAGGCAGAAACATGC+AGG + chr1.3:5193355-5193374 None:intergenic 45.0%
CCTAAGGTGTGTTGAAGCAA+AGG + chr1.3:5189089-5189108 None:intergenic 45.0%
CCTTTGCTTCAACACACCTT+AGG - chr1.3:5189086-5189105 MS.gene051662:intron 45.0%
CGTTAAAAAGGTGGAGTTGG+AGG - chr1.3:5188455-5188474 MS.gene051662:intron 45.0%
CTTAGACAAAGCTGGGAATG+AGG - chr1.3:5190675-5190694 MS.gene051662:intron 45.0%
GAAATACAACTCCTTGGCCA+TGG + chr1.3:5187686-5187705 None:intergenic 45.0%
GAATCAAACCTGAGACCTTG+AGG + chr1.3:5190981-5191000 None:intergenic 45.0%
GAATGGTGTGAACAAGCTTG+CGG - chr1.3:5187826-5187845 MS.gene051662:intron 45.0%
GATATTGCCATCTTGACAGG+AGG - chr1.3:5190495-5190514 MS.gene051662:intron 45.0%
GCAAAAAAGTGGGAGGTTTG+AGG + chr1.3:5188874-5188893 None:intergenic 45.0%
GCACTCTTTGGACGTATCTA+TGG - chr1.3:5189108-5189127 MS.gene051662:intron 45.0%
GCCTGCCAAATCATTTGTCT+TGG + chr1.3:5188526-5188545 None:intergenic 45.0%
GCGAAGAAAATGGAGAGAAG+GGG + chr1.3:5193063-5193082 None:intergenic 45.0%
GCTATCAAGAAACTCCAGGT+GGG - chr1.3:5187721-5187740 MS.gene051662:intron 45.0%
GGACTTAGCTTAGACAAAGC+TGG - chr1.3:5190667-5190686 MS.gene051662:intron 45.0%
GGATAGTGAATTGGCTGATG+TGG - chr1.3:5189953-5189972 MS.gene051662:CDS 45.0%
GGTAACCCAATGGACAATTC+AGG - chr1.3:5193562-5193581 MS.gene051662:CDS 45.0%
GTTGTGGTTGTGTGAATTGC+AGG - chr1.3:5189926-5189945 MS.gene051662:intron 45.0%
GTTGTGTGAATTGCAGGTTG+AGG - chr1.3:5189932-5189951 MS.gene051662:CDS 45.0%
TACAATACCCTCCTCAACAG+CGG + chr1.3:5191465-5191484 None:intergenic 45.0%
TACCACGTGTGATAAGCACA+GGG + chr1.3:5188735-5188754 None:intergenic 45.0%
TACGATGCACGAATGCCTTT+GGG - chr1.3:5188937-5188956 MS.gene051662:intron 45.0%
TAGTGCAGGGAACAATCATG+AGG - chr1.3:5189983-5190002 MS.gene051662:CDS 45.0%
TCCAACGACGATACGAGATA+CGG - chr1.3:5191931-5191950 MS.gene051662:intron 45.0%
TGGGAATGAAGAAATGGCAG+CGG + chr1.3:5187590-5187609 None:intergenic 45.0%
TGTGAACAAGCTTGCGGATT+TGG - chr1.3:5187832-5187851 MS.gene051662:intron 45.0%
TTACTCTTGGTCCTAAGGGA+AGG - chr1.3:5187861-5187880 MS.gene051662:intron 45.0%
TTCCGCTATCAAGAAACTCC+AGG - chr1.3:5187717-5187736 MS.gene051662:intron 45.0%
TTGTCCATTGGGTTACCAAC+AGG + chr1.3:5193559-5193578 None:intergenic 45.0%
! AACAAGCTTGCGGATTTGGT+TGG - chr1.3:5187836-5187855 MS.gene051662:intron 45.0%
! ACAAATGATTTGGCAGGCGA+TGG - chr1.3:5188528-5188547 MS.gene051662:intron 45.0%
! AGGTACTGTTATCAGAGAGG+AGG - chr1.3:5190642-5190661 MS.gene051662:intron 45.0%
! CTCTGCCTTTCTTTTCTCCT+AGG - chr1.3:5193914-5193933 MS.gene051662:CDS 45.0%
! CTGGACTTTTACGGTGTGTT+TGG - chr1.3:5192306-5192325 MS.gene051662:intron 45.0%
! GCAGGTTGAGGATAGTGAAT+TGG - chr1.3:5189944-5189963 MS.gene051662:CDS 45.0%
! GCCAAGACAAATGATTTGGC+AGG - chr1.3:5188522-5188541 MS.gene051662:intron 45.0%
! TCGCTTGGTAACTGCTTCTT+GGG + chr1.3:5190767-5190786 None:intergenic 45.0%
! TGGCAGTGTTGTTAGTGAGA+AGG - chr1.3:5191820-5191839 MS.gene051662:intron 45.0%
!! ACACGAACACCTTTGGGATT+AGG - chr1.3:5188991-5189010 MS.gene051662:intron 45.0%
!! ATACGTCCAAAGAGTGCCTA+AGG + chr1.3:5189105-5189124 None:intergenic 45.0%
!! GCTCAAGGTCTTATTGCAGA+AGG - chr1.3:5188573-5188592 MS.gene051662:intron 45.0%
!! GGTGTTACTCTTGGTCCTAA+GGG - chr1.3:5187857-5187876 MS.gene051662:intron 45.0%
!! GTTGAGGAGGGTATTGTAGT+TGG - chr1.3:5191467-5191486 MS.gene051662:CDS 45.0%
!! TGGTGTTACTCTTGGTCCTA+AGG - chr1.3:5187856-5187875 MS.gene051662:intron 45.0%
!!! ACCTCTGTTGTTTTGGCTCA+AGG - chr1.3:5188558-5188577 MS.gene051662:intron 45.0%
!!! TTAAAATTTTAAAAACAATT+TGG + chr1.3:5189592-5189611 None:intergenic 5.0%
!!! TTGTTTTTAAAATTTTAAAT+TGG - chr1.3:5189594-5189613 MS.gene051662:intron 5.0%
AACCCTGTGCTTATCACACG+TGG - chr1.3:5188730-5188749 MS.gene051662:intron 50.0%
AAGAGAGGTTGCATGAGGAG+AGG + chr1.3:5187564-5187583 None:intergenic 50.0%
ACACACACACACACACACAC+AGG - chr1.3:5189791-5189810 MS.gene051662:intron 50.0%
ATATTTAGGGGGTGGAGAGG+CGG + chr1.3:5190837-5190856 None:intergenic 50.0%
ATCTTTGGTGAGCACCACCT+TGG + chr1.3:5190716-5190735 None:intergenic 50.0%
ATGATTGGGAAGAACCCACC+TGG + chr1.3:5187738-5187757 None:intergenic 50.0%
ATGTGGCAGCAGTTAGTGCA+GGG - chr1.3:5189970-5189989 MS.gene051662:CDS 50.0%
ATTGCAGCACTTAAGGCTCC+TGG - chr1.3:5190441-5190460 MS.gene051662:intron 50.0%
CGCTATCAAGAAACTCCAGG+TGG - chr1.3:5187720-5187739 MS.gene051662:intron 50.0%
CTACGATGCACGAATGCCTT+TGG - chr1.3:5188936-5188955 MS.gene051662:intron 50.0%
CTCTTGCGTTCTCCAAATCC+AGG + chr1.3:5190462-5190481 None:intergenic 50.0%
CTGCTGGACAGCGAAGAAAA+TGG + chr1.3:5193073-5193092 None:intergenic 50.0%
GAATGAAGAAATGGCAGCGG+AGG + chr1.3:5187587-5187606 None:intergenic 50.0%
GAGAGGGGGAAACCTCAATT+TGG + chr1.3:5190807-5190826 None:intergenic 50.0%
GCACGTAAGCCTAATCCCAA+AGG + chr1.3:5189003-5189022 None:intergenic 50.0%
GCACTTAAGGCTCCTGGATT+TGG - chr1.3:5190447-5190466 MS.gene051662:intron 50.0%
GCAGAAGAGGGGTTGTGAAA+TGG - chr1.3:5189532-5189551 MS.gene051662:CDS 50.0%
GCAGGGAACAATCATGAGGT+AGG - chr1.3:5189987-5190006 MS.gene051662:CDS 50.0%
GCTCAGACTTGCATCAAAGG+TGG - chr1.3:5191505-5191524 MS.gene051662:CDS 50.0%
GGACGCTCTTAATGCCACAA+AGG - chr1.3:5191361-5191380 MS.gene051662:CDS 50.0%
GTCTCAGGTTTGATTCTCCG+CGG - chr1.3:5190985-5191004 MS.gene051662:CDS 50.0%
TAAAGTCTCAGCCATGGCCA+AGG - chr1.3:5187672-5187691 MS.gene051662:intron 50.0%
TCAAACCTGAGACCTTGAGG+AGG + chr1.3:5190978-5190997 None:intergenic 50.0%
TCCGTATCTCGTATCGTCGT+TGG + chr1.3:5191935-5191954 None:intergenic 50.0%
TCGCTCTCACCAGGAAGAAT+CGG - chr1.3:5187644-5187663 MS.gene051662:intron 50.0%
TGGCCATGGCTGAGACTTTA+GGG + chr1.3:5187672-5187691 None:intergenic 50.0%
TTACTTTCAGGCCGCTGTTG+AGG - chr1.3:5191451-5191470 MS.gene051662:CDS 50.0%
TTGGCCATGGCTGAGACTTT+AGG + chr1.3:5187673-5187692 None:intergenic 50.0%
! ATTCTCCGCGGTGCCAATTT+GGG - chr1.3:5190997-5191016 MS.gene051662:CDS 50.0%
! CGTTGCTGGTGGTTTTTCTG+CGG + chr1.3:5187624-5187643 None:intergenic 50.0%
! CTCGCTTGGTAACTGCTTCT+TGG + chr1.3:5190768-5190787 None:intergenic 50.0%
! GAAGCATCCTACTGTTGTCC+AGG - chr1.3:5193438-5193457 MS.gene051662:intron 50.0%
! GAGGGCATGCAATTTGATCG+AGG - chr1.3:5190104-5190123 MS.gene051662:intron 50.0%
! GTGGGGTGTTTGCTTTGATG+CGG - chr1.3:5188266-5188285 MS.gene051662:intron 50.0%
! GTTGCTGGTGGTTTTTCTGC+GGG + chr1.3:5187623-5187642 None:intergenic 50.0%
! TTCGTCCGAGTTTAGGGTCA+AGG - chr1.3:5188088-5188107 MS.gene051662:intron 50.0%
! TTGTGACCGGAGGGTGTATT+GGG - chr1.3:5192949-5192968 MS.gene051662:CDS 50.0%
! TTTAGGGCTCCGATTCTTCC+TGG + chr1.3:5187656-5187675 None:intergenic 50.0%
! TTTGTGACCGGAGGGTGTAT+TGG - chr1.3:5192948-5192967 MS.gene051662:CDS 50.0%
!! AAAGGGTGTCGTGACACTTG+AGG - chr1.3:5190046-5190065 MS.gene051662:intron 50.0%
!! AGGGTATTGTAGTTGGCGGT+GGG - chr1.3:5191474-5191493 MS.gene051662:CDS 50.0%
!! CAAAGGCATTCGTGCATCGT+AGG + chr1.3:5188938-5188957 None:intergenic 50.0%
!! GAATGAGGTTCTAGGCACTG+CGG - chr1.3:5190690-5190709 MS.gene051662:CDS 50.0%
!! GAGGAGGGTATTGTAGTTGG+CGG - chr1.3:5191470-5191489 MS.gene051662:CDS 50.0%
!! GATAGCTGAGGCGTTGAGTA+AGG - chr1.3:5190016-5190035 MS.gene051662:CDS 50.0%
!! TGCACCTGTTGGTAACCCAA+TGG - chr1.3:5193552-5193571 MS.gene051662:CDS 50.0%
AAATGGCAGCGGAGGAAGAG+AGG + chr1.3:5187579-5187598 None:intergenic 55.0%
CCAAGCAACATCTGACCACC+TGG + chr1.3:5193459-5193478 None:intergenic 55.0%
CCAGGTGGTCAGATGTTGCT+TGG - chr1.3:5193456-5193475 MS.gene051662:intron 55.0%
CGTTTCCCCAATACACCCTC+CGG + chr1.3:5192958-5192977 None:intergenic 55.0%
CTGACCACCTGGACAACAGT+AGG + chr1.3:5193448-5193467 None:intergenic 55.0%
GAGCCCTAAAGTCTCAGCCA+TGG - chr1.3:5187666-5187685 MS.gene051662:intron 55.0%
GATGTGGCAGCAGTTAGTGC+AGG - chr1.3:5189969-5189988 MS.gene051662:CDS 55.0%
GCATCCTACTGTTGTCCAGG+TGG - chr1.3:5193441-5193460 MS.gene051662:intron 55.0%
GGAGGAAGAGAGGTTGCATG+AGG + chr1.3:5187569-5187588 None:intergenic 55.0%
TATTTAGGGGGTGGAGAGGC+GGG + chr1.3:5190836-5190855 None:intergenic 55.0%
TCGTGACACTTGAGGAGGGA+AGG - chr1.3:5190054-5190073 MS.gene051662:intron 55.0%
TGCAAAACTGTCTGGCGGTG+TGG - chr1.3:5191164-5191183 MS.gene051662:CDS 55.0%
TGGCGGTGTGGCTGTAATTC+AGG - chr1.3:5191176-5191195 MS.gene051662:CDS 55.0%
TTACCAACAGGTGCAGCCTC+AGG + chr1.3:5193547-5193566 None:intergenic 55.0%
TTCTGCGGGCGGAAGAAGAT+GGG + chr1.3:5187609-5187628 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG - chr1.3:5190963-5190982 MS.gene051662:intron 55.0%
TTTCAGGCCGCTGTTGAGGA+GGG - chr1.3:5191455-5191474 MS.gene051662:CDS 55.0%
TTTCTGCGGGCGGAAGAAGA+TGG + chr1.3:5187610-5187629 None:intergenic 55.0%
! GATTCTCCGCGGTGCCAATT+TGG - chr1.3:5190996-5191015 MS.gene051662:CDS 55.0%
! GGTGTCGTGACACTTGAGGA+GGG - chr1.3:5190050-5190069 MS.gene051662:intron 55.0%
! TGTGACCGGAGGGTGTATTG+GGG - chr1.3:5192950-5192969 MS.gene051662:CDS 55.0%
! TTGAGGAGGAGCACACTCCA+AGG + chr1.3:5190964-5190983 None:intergenic 55.0%
!! ATGGTGTTGGCTTGGGACCT+TGG - chr1.3:5190944-5190963 MS.gene051662:intron 55.0%
!! GAGGGTATTGTAGTTGGCGG+TGG - chr1.3:5191473-5191492 MS.gene051662:CDS 55.0%
!! GCTGAGGCGTTGAGTAAGGT+TGG - chr1.3:5190020-5190039 MS.gene051662:intron 55.0%
!! TGGCCTGATGGTGTTGGCTT+GGG - chr1.3:5190937-5190956 MS.gene051662:intron 55.0%
!! TGGTGTCACTGTTGCCAGAG+AGG - chr1.3:5187931-5187950 MS.gene051662:CDS 55.0%
!! TTGGCCTGATGGTGTTGGCT+TGG - chr1.3:5190936-5190955 MS.gene051662:intron 55.0%
AGAGGCGGGGAAAGAGAGAG+GGG + chr1.3:5190822-5190841 None:intergenic 60.0%
ATTTAGGGGGTGGAGAGGCG+GGG + chr1.3:5190835-5190854 None:intergenic 60.0%
CTTTCAGGCCGCTGTTGAGG+AGG - chr1.3:5191454-5191473 MS.gene051662:CDS 60.0%
GAACCTGAGGCTGCACCTGT+TGG - chr1.3:5193541-5193560 MS.gene051662:intron 60.0%
GAGAGGCGGGGAAAGAGAGA+GGG + chr1.3:5190823-5190842 None:intergenic 60.0%
GGTCCCAAGCCAACACCATC+AGG + chr1.3:5190943-5190962 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG - chr1.3:5190970-5190989 MS.gene051662:intron 60.0%
! GCTGGTGGTTTTTCTGCGGG+CGG + chr1.3:5187620-5187639 None:intergenic 60.0%
! GGGTGTCGTGACACTTGAGG+AGG - chr1.3:5190049-5190068 MS.gene051662:intron 60.0%
! TCCGCGGTGCCAATTTGGGT+GGG - chr1.3:5191001-5191020 MS.gene051662:CDS 60.0%
CCAGCAACGTCGCTCTCACC+AGG - chr1.3:5187635-5187654 MS.gene051662:intron 65.0%
CCTGGTGAGAGCGACGTTGC+TGG + chr1.3:5187638-5187657 None:intergenic 65.0%
GAGGCGGGGAAAGAGAGAGG+GGG + chr1.3:5190821-5190840 None:intergenic 65.0%
GCCCACCCAAATTGGCACCG+CGG + chr1.3:5191005-5191024 None:intergenic 65.0%
GGAGAGGCGGGGAAAGAGAG+AGG + chr1.3:5190824-5190843 None:intergenic 65.0%
GGTGAGAGCGACGTTGCTGG+TGG + chr1.3:5187635-5187654 None:intergenic 65.0%
! CTCCGCGGTGCCAATTTGGG+TGG - chr1.3:5191000-5191019 MS.gene051662:CDS 65.0%
! TCTAGGCACTGCGGCCAAGG+TGG - chr1.3:5190699-5190718 MS.gene051662:CDS 65.0%
!! GGTTCTAGGCACTGCGGCCA+AGG - chr1.3:5190696-5190715 MS.gene051662:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 5187547 5193949 5187547 ID=MS.gene051662
chr1.3 mRNA 5187547 5193949 5187547 ID=MS.gene051662.t1;Parent=MS.gene051662
chr1.3 exon 5193758 5193949 5193758 ID=MS.gene051662.t1.exon1;Parent=MS.gene051662.t1
chr1.3 CDS 5193758 5193949 5193758 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5193544 5193669 5193544 ID=MS.gene051662.t1.exon2;Parent=MS.gene051662.t1
chr1.3 CDS 5193544 5193669 5193544 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5192894 5193031 5192894 ID=MS.gene051662.t1.exon3;Parent=MS.gene051662.t1
chr1.3 CDS 5192894 5193031 5192894 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5192689 5192784 5192689 ID=MS.gene051662.t1.exon4;Parent=MS.gene051662.t1
chr1.3 CDS 5192689 5192784 5192689 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5191306 5191548 5191306 ID=MS.gene051662.t1.exon5;Parent=MS.gene051662.t1
chr1.3 CDS 5191306 5191548 5191306 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5190980 5191214 5190980 ID=MS.gene051662.t1.exon6;Parent=MS.gene051662.t1
chr1.3 CDS 5190980 5191214 5190980 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5190683 5190852 5190683 ID=MS.gene051662.t1.exon7;Parent=MS.gene051662.t1
chr1.3 CDS 5190683 5190852 5190683 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5190299 5190376 5190299 ID=MS.gene051662.t1.exon8;Parent=MS.gene051662.t1
chr1.3 CDS 5190299 5190376 5190299 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5190114 5190185 5190114 ID=MS.gene051662.t1.exon9;Parent=MS.gene051662.t1
chr1.3 CDS 5190114 5190185 5190114 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5189931 5190035 5189931 ID=MS.gene051662.t1.exon10;Parent=MS.gene051662.t1
chr1.3 CDS 5189931 5190035 5189931 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5189655 5189747 5189655 ID=MS.gene051662.t1.exon11;Parent=MS.gene051662.t1
chr1.3 CDS 5189655 5189747 5189655 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5189479 5189571 5189479 ID=MS.gene051662.t1.exon12;Parent=MS.gene051662.t1
chr1.3 CDS 5189479 5189571 5189479 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5187913 5188036 5187913 ID=MS.gene051662.t1.exon13;Parent=MS.gene051662.t1
chr1.3 CDS 5187913 5188036 5187913 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
chr1.3 exon 5187547 5187560 5187547 ID=MS.gene051662.t1.exon14;Parent=MS.gene051662.t1
chr1.3 CDS 5187547 5187560 5187547 ID=cds.MS.gene051662.t1;Parent=MS.gene051662.t1
Gene Sequence

>MS.gene051662

ATGGCATCATGCAACCTCTCCTCATGCAACCTCTCTTCCTCCGCTGCCATTTCTTCATTCCCATCTTCTTCCGCCCGCAGAAAAACCACCAGCAACGTCGCTCTCACCAGGAAGAATCGGAGCCCTAAAGTCTCAGCCATGGCCAAGGAGTTGTATTTCAACAAAGATGGTTCCGCTATCAAGAAACTCCAGGTGGGTTCTTCCCAATCATGCTCAAAAAACGAAAAAATTGATTTTTTTTAATGTTTTTTTAATTGTTTTGTTTGTGTTTTTGTTACAGAATGGTGTGAACAAGCTTGCGGATTTGGTTGGTGTTACTCTTGGTCCTAAGGGAAGGAATGTTGTTCTTGAGAGCAAGTATGGTTCTCCTAAGATTGTTAATGATGGTGTCACTGTTGCCAGAGAGGTGTGTGTTTGTTTACTTGAACCTGTTTTTTAATTCTGTGATGTTATTTTATTTTATATATGTGAATTAGATTAATTTGTGTGAGTTTAGAGTTCATGATTTCACTTGAATTATTGTTTTTGGTTATATGTTTAATTCGTCCGAGTTTAGGGTCAAGGATTTTACTTGAATTACTGTTTTTAGTGAATTAGTTATGTGGGGTGTTTAGGGTCTAAGATTTCACTTGAATTATTGTTTTTGGTTATATATTTATTTTGTCTGAGTTTAGGGTCTAAGATTTTACTTGAATTATTGTTTTTGGTGAATTAGTTATGTGGGGTGTTTGCTTTGATGCGGCGTGTTTAATGTCTAAGATTTTACTTGAATTATTGTTTTAGGTGAATTAGTTATGTGGAGTGTTTGTTTTGATGTTGGGTGTTTAGGGTCTAAGATTTTACTTGAATTATTATTTTTAGTGAATTAATAATGTGGGGTGTTTCATCTGATGTTCTGTTTACATTTGCGTTAAAAAGGTGGAGTTGGAGGATCCAGTTGAGAATATTGGTGCTAAATTGGTTAGACAGGCAGCCGCCAAGACAAATGATTTGGCAGGCGATGGAACTACTACCTCTGTTGTTTTGGCTCAAGGTCTTATTGCAGAAGGTGTTAAGGTAGACTTGTTATGAGTTTTGGAATAAGTAACTAATAATGTGCTTGGTTTGGTTTTGCTTGTTGTTACATGATTGGGGCCTCATTTTAGAGTGAAATTTTATTTTATAGGTTGTTGCAGCTGGTGCAAACCCTGTGCTTATCACACGTGGTATAGAGAAGACAGCGAAAGCTCTTGTTGCTGAACTTAAACTAATGTCAAAAGAGGTGAAGTCGTTTTCTTGTTTTTTTATGTATGTTTATGCATTTTTATTACACGTGTTATGGGTACCTCAAACCTCCCACTTTTTTGCTTATTCTGGCGTGTTCATTGCTTAGCAATTATTTCCTAATACCTACGATGCACGAATGCCTTTGGGATTACATTGCTTAACAATTTTTTCCTATGAAACACGAACACCTTTGGGATTAGGCTTACGTGCGTCGTTGCACGACACATGTACAACATGTGTAAGACAACTTAAACAAATACCAATTTTTTTTTTCCTTTGCTTCAACACACCTTAGGCACTCTTTGGACGTATCTATGGGGTTAAAGATGTGTTGAAGAAATGATAATCAATGAGGGGATTTAAGACATTCAATTTGATTACATCACTTTATCTTTTTGTAATGAATTTTTTTTCTCAATTAGATGTAGGGGTGTGAATGGTTCATGAACTAAACCAAATTTATGGTTCGGTTCAGTTCTTATAACTTCTATCATCCAAAGTCAGTTTTTTTTTTTTTTATAAACCCGTTCAATTTGGTTCAAAATCGGTGAATTGGTTTATATTATAAAACTAAAATAACCTTTTTTTTTTTTTTTTTTTTTCTTTTTTATGAATTGAAATGGTTTTGTGCTAAAAAATTAGCCTTCAATTATGGGTTGAAATTAAGAACTTGCAGATTTGTAAATTATGAAGTGGAAGTTTGTGAAATCATATGAATAGCAGAAGAGGGGTTGTGAAATGGGTACAGATATACCCCAGTTTTGAGAAACAATAAACCAAATTGTTTTTAAAATTTTAAATTGGACAGTATCAGTTTTTGTAAATAAATAGTTAGGTTTTTTTAGATTGATTAATTGGATTTTAAGTTATAGTTCATGTGAACCGGTTTTTATGCACACCCCTATTTAGATGCACTTGTATATTTTGATTCTCAATTTTAATATGTTATAAATAATGTTAATATTTTATTGAATTATAACACACACACACACACACACACAGGTGTCAATGTCCTATGTTTTTTACATTAATAGTGTCAACATGTCTGCATCATGTTAGGTGTTTGTGCTTCATAAATGATTTCCCTCATCTTTTTCATTTAAACTTAGAAGAGTTGTGGTTGTGTGAATTGCAGGTTGAGGATAGTGAATTGGCTGATGTGGCAGCAGTTAGTGCAGGGAACAATCATGAGGTAGGAAATATGATAGCTGAGGCGTTGAGTAAGGTTGGTAGAAAGGGTGTCGTGACACTTGAGGAGGGAAGGAGTGCTGAAAACAATCTGTATGTTGTTGAGGGCATGCAATTTGATCGAGGATATATTTCACCCTACTTTGTTACAGACAGTGAGAAAATGACCGTTGAATTTGAGAACTGCAAGGTGCGACATTTGTTTTCTATTCGCCAACTTATTATTATCTTTGCCATCAACTTGTGTTTTTACTTAAAAATTTATATATGTTTTTGTGCAGTTGCTTTTAGTTGACAAAAAGATATCCAATGCAAGGGATCTTATTAACATACTAGAGGACGCAATTAGAAACGGATTCCCTATTTTGATAATTGCAGAGGATATTGAACAAGAAGCTTTGGCAACTCTTGTTGTGAACAAACTTAGAGGATCACTGAAGATTGCAGCACTTAAGGCTCCTGGATTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACAGGAGGTTTATAAATTTAAATCTTTCTTGTCTTTGCTTATTCTGTTAAATTTAGAAGTGTATAATTTCTCCCTTTGTTCCTTTTTTGGTTTAGCTGTTGGTAACAATATGTATCTTCCTAATTCGCTTACAGGTACTGTTATCAGAGAGGAGGTTGGACTTAGCTTAGACAAAGCTGGGAATGAGGTTCTAGGCACTGCGGCCAAGGTGGTGCTCACCAAAGATACAACCACAATAGTTGGTGATGGAAGTACCCAAGAAGCAGTTACCAAGCGAGTTTCACAAATTAAGAACCAAATTGAGGTTTCCCCCTCTCTCTTTCCCCGCCTCTCCACCCCCTAAATATTGTTTGCATGGCATGTGACTTTTTTGAGACCTTGTACATGAAGAATAAGTAATGATAGTTTTAAAAAATGCGAAATATTTTGGCCTGATGGTGTTGGCTTGGGACCTTGGAGTGTGCTCCTCCTCAAGGTCTCAGGTTTGATTCTCCGCGGTGCCAATTTGGGTGGGCTAATTTAGCTTCTTCAAAAAAAAAAAAAAGTCTACATTATACAGGCTAGCTTCTTAATTTTTTTTTTTTTTTTAAAATGTCTACATATTCTATAGGCTGCAGAACAAGATTATGAAAAGGAGAAGCTGAACGAAAGGATTGCAAAACTGTCTGGCGGTGTGGCTGTAATTCAGGTAATAATGATCCCATCTCAGTGAACTCGTTGAAATTTGATAATAAGCTTGCTTTTAACTTCTCTTCAAATCATATTAAGCAGTGCAAATTTTGTGTTTTGTTACGAGTATAGGTTGGTGCACAAACTGAGACAGAACTCAAGGAAAAGAAATTGAGAGTTGAGGACGCTCTTAATGCCACAAAGGTGACTTAATCTTTCTCAGAATGTTCATTAATTCATCCTTTTACCGGTTCTATAAGCTCATAGTTTCTTTACTTTCAGGCCGCTGTTGAGGAGGGTATTGTAGTTGGCGGTGGGTGCACTTTGCTCAGACTTGCATCAAAGGTGGATGCAATCAAGGCTACCCTTGCAAATGATGAAGAAAAAGTGAGTCATCATTTGATATTGCAAGAACTCAAGTTGTTTTTTTTCCCCCTTTATATGGAGATATTTTTCGTTTTAGGTCCTTGAAAGTGTTATTGACTTGTTTGTGCTATGTTCAGTGATGTCATTATTTCATATTCAAATTTCCGACACTGATTATAACTTTATAATTAAAACGTGGCGCAGGTTGGAGCAGACATTGTTAAAAGAGCTCTTAGTTACCCTCTGAAATTAATAGCAAAAAATGCTGGTGTAAATGGCAGTGTTGTTAGTGAGAAGGTATAAAAATCGGCTAAATTTGGAACTCGTTACTCTCGTATGTGCTTGTGCTGATGTAACTTATGTAACTTGTATATTGGTAGGTTCTATCCAACGACGATACGAGATACGGATATAATGCTGCAACTGGAAAATATGAAGATTTAATGTCGGCTGGGATCATTGATCCAACAAAGGTGATTTATAGATTCATTAATGTACTGTATTGTTTTTTAACTTATCTGCATGTGAATTTACCGCTATCTTTAGTAGCATGTCTAGTAAATTAAACTTAGCTTGTAGGGCCCGCATCATTATAAATGGTTTGTATATGGATATCTTGTGTTTTGATTAAATTTTGGTTTCACACCAAATGAGGTTCTTAAATCATGCATATTGTTGCAAAATGAAAGTGTATCATTCCTTAGAAAAATTGTATTTGGAGGATGTTAGGCACAATACATTACAGATTTGTTGAAGTGTCACTGGACTTTTACGGTGTGTTTGGTTCGCAAGAGAAATTATGAAGAGAGAAATAGGTAAGAGAGAGTTTGAGAAGAGAGAAAGAAGTGAGAAATAGAGTAGATTTGAAGTATTGTTTGGTTCAAGAGAAGAAGAAGAGAAATAGGAAAGAGAGAAACACAATTATTTTTTGAATTGACAAATAAGCCCCTATTCAAAAATACATTTATACTAAAGTCTTATTGTCAAATTTAATTTATTTTTCATTAATCCTCTTATTGTCAGTTTTTAAAAAGTAAGTACATTTATTATTATCGTTGTTGAATAACGATTGTAAATGTAATAATTTCCTTAAAAAAAATTGTGGATGTAATAAAAATTGCTATTCTCATAAAAAAATAATCAAAGAAACCTTGAAATTGCTCGCCATTAATATACGAATTACACAGTAAATAGAATAATCAAAACTTGTAGCTAGCTACTTGCAATTTGATATTGCTTTATAATATCATCATCACATTCGGTTTGTTGTGGGCACCCTCCGATCACAAATATAAGCAAAAATTTACTTTTTAGATTCATTCAATAAATGATGTATGTGGTCTATTTAATAGTCCACATACATCATCTATTCAATGAACCTAAAAAGTGAATTTTTGCTTATATTTGTGACCGGAGGGTGTATTGGGGAAACGTCAAATAAAAATTAAAATTAAAGCATATGTATGTATAAGAAATGAAAGCAAAGGGTAAAGCTGTAATTACCTGTATATGTTACCCCTTCTCTCCATTTTCTTCGCTGTCCAGCAGAGAAATCAAAAAGGTGATATTTGATCTCTCATATTTCTCTCTCTTTAACTTCTCTCCTCCACCAAACTGAAGAAATTGAGCATTTCTCTCCTATCTCTCTCTTTGCTAACTCTCTTCACAATTTCTCTTCAAACAAACAGACTATTAATGTGGGAAACAAGACCTGATTTATTTTATGTTCTAGTTTCTTGATTAGGGAAATTGGGGTGTAATACTATTCTATGACGATTCTTAAAAGGCTTCTTGGAACATAGCTTATCCTGCATGTTTCTGCCTTCTATGTGTGACACTACACTCTATCATGTTTCTGCATTCTTTATTCTTGATACGAAACATTGATAATCTGAAGCATCCTACTGTTGTCCAGGTGGTCAGATGTTGCTTGGAACATGCAGCCTCTGTTGCGAAAACATTCTTAATGTCAGACTGTGTTGTTGTTGAGATAAAGGAACCTGAGGCTGCACCTGTTGGTAACCCAATGGACAATTCAGGTATGTAGTGTGCGGTATTTTTATGTTTCTATTACCGTGTTATTAATTAATAATGGAAATGTATGTATGATATCTATAAAAAGATAGTGATATTTTAATTAAAAGTGACAATAGAAAATAATAATAAATATTTTGATAACATTTTTTTTTATGTGATATACGTTTAAACTATATCTATTTGTTTGTAACCAAAAAAATACCATTGTTTATTCCTATTACTCTGTGTGTAACTGTCAATTGATAACCTAAGAATCTTGAATTTTAAGGTGAAAACTATGATTTTAAATATTGGGTATCTCACATATCTTTTTGTAAAACGTTGTTGGCTGACTCTGCCTTTCTTTTCTCCTAGGATTCGGCATGTAG

Protein sequence

>MS.gene051662.t1

MASCNLSSCNLSSSAAISSFPSSSARRKTTSNVALTRKNRSPKVSAMAKELYFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVAELKLMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKISNARDLINILEDAIRNGFPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKAGNEVLGTAAKVVLTKDTTTIVGDGSTQEAVTKRVSQIKNQIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDDTRYGYNAATGKYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEAAPVGNPMDNSGFGM