AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071893

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071893.t1 MTR_2g435930 98.422 507 8 0 1 507 1 507 0.0 1014
MS.gene071893.t1 MTR_6g043810 45.984 498 253 3 11 507 15 497 8.97e-160 463
MS.gene071893.t1 MTR_6g043810 45.984 498 253 3 11 507 25 507 1.26e-159 463
MS.gene071893.t1 MTR_3g111020 46.667 480 240 2 2 481 34 497 2.07e-151 444
MS.gene071893.t1 MTR_5g067460 45.860 471 239 2 11 481 47 501 8.13e-148 435
MS.gene071893.t1 MTR_0039s0080 43.359 512 259 4 1 507 17 502 4.84e-146 429
MS.gene071893.t1 MTR_1g101500 44.554 505 240 5 8 497 55 534 2.33e-141 417
MS.gene071893.t1 MTR_5g010830 43.856 472 247 3 5 476 53 506 2.13e-135 402
MS.gene071893.t1 MTR_8g102430 42.918 473 231 6 7 476 8 444 7.93e-132 390
MS.gene071893.t1 MTR_6g088805 42.308 468 251 5 17 484 25 473 1.11e-130 389
MS.gene071893.t1 MTR_4g027920 39.958 473 262 2 13 481 150 604 2.77e-120 366
MS.gene071893.t1 MTR_5g011540 32.298 483 300 3 4 480 28 489 1.44e-79 257
MS.gene071893.t1 MTR_6g081410 28.184 479 330 2 1 479 7 471 5.74e-73 239
MS.gene071893.t1 MTR_6g081810 28.964 473 294 3 5 477 13 443 3.54e-72 236
MS.gene071893.t1 MTR_6g081240 31.004 458 292 6 16 469 7 444 1.46e-70 232
MS.gene071893.t1 MTR_6g081780 26.804 485 329 3 1 479 7 471 3.61e-68 227
MS.gene071893.t1 MTR_6g081400 31.828 465 296 5 16 477 12 458 7.18e-68 226
MS.gene071893.t1 MTR_6g081300 29.938 481 312 5 16 492 7 466 1.06e-67 225
MS.gene071893.t1 MTR_6g066380 27.975 479 329 2 1 477 7 471 4.13e-67 224
MS.gene071893.t1 MTR_8g106670 27.673 477 329 2 17 493 10 470 2.35e-66 222
MS.gene071893.t1 MTR_1g108840 28.753 473 320 3 3 474 24 480 2.57e-65 219
MS.gene071893.t1 MTR_6g004220 29.299 471 316 3 8 477 12 466 4.31e-65 219
MS.gene071893.t1 MTR_1g108810 28.509 456 306 4 16 469 31 468 1.31e-64 217
MS.gene071893.t1 MTR_6g004220 29.374 463 310 3 8 469 19 465 4.57e-63 214
MS.gene071893.t1 MTR_6g081310 30.000 470 287 6 16 473 7 446 5.32e-63 213
MS.gene071893.t1 MTR_6g081390 29.158 463 311 3 16 477 9 455 1.74e-60 206
MS.gene071893.t1 MTR_7g082810 29.769 477 303 8 13 481 14 466 1.08e-59 204
MS.gene071893.t1 MTR_1g109060 28.633 461 309 4 19 477 24 466 7.50e-57 196
MS.gene071893.t1 MTR_7g082800 31.111 405 259 2 78 480 1 387 5.63e-56 192
MS.gene071893.t1 MTR_1g109060 28.698 453 303 4 19 469 24 458 1.28e-54 191
MS.gene071893.t1 MTR_1g108990 27.586 464 318 2 19 481 25 471 1.88e-50 179
MS.gene071893.t1 MTR_2g078930 25.758 462 319 2 18 475 42 483 3.67e-48 174
MS.gene071893.t1 MTR_6g004220 28.796 382 255 3 8 388 19 384 8.79e-48 172
MS.gene071893.t1 MTR_8g069470 26.392 485 320 10 6 477 31 491 7.59e-45 165
MS.gene071893.t1 MTR_2g079020 25.161 465 326 3 18 480 36 480 1.26e-44 164
MS.gene071893.t1 MTR_2g078960 25.806 465 323 2 18 479 32 477 7.98e-44 161
MS.gene071893.t1 MTR_4g048000 24.236 458 325 3 20 474 65 503 2.27e-41 155
MS.gene071893.t1 MTR_2g022980 24.396 455 324 4 25 475 50 488 4.79e-41 154
MS.gene071893.t1 MTR_2g088400 24.508 457 323 3 20 473 53 490 7.22e-41 154
MS.gene071893.t1 MTR_5g033100 24.034 466 333 5 16 479 53 499 9.80e-41 154
MS.gene071893.t1 MTR_2g078970 24.729 461 325 2 18 475 30 471 2.10e-40 152
MS.gene071893.t1 MTR_6g047610 26.134 463 299 8 19 469 31 462 5.75e-39 148
MS.gene071893.t1 MTR_5g032720 25.591 465 322 7 14 474 31 475 5.87e-38 145
MS.gene071893.t1 MTR_1g021740 23.319 476 348 3 2 477 18 476 2.65e-37 144
MS.gene071893.t1 MTR_5g032750 25.325 462 323 7 16 474 33 475 6.76e-37 142
MS.gene071893.t1 MTR_6g004220 28.754 313 206 3 8 319 19 315 2.89e-36 137
MS.gene071893.t1 MTR_2g088400 24.533 428 300 4 20 444 53 460 8.56e-36 139
MS.gene071893.t1 MTR_8g063590 26.097 433 303 5 50 481 84 500 2.55e-35 138
MS.gene071893.t1 MTR_1g100180 24.834 451 319 4 20 469 44 475 3.75e-34 135
MS.gene071893.t1 MTR_5g090290 25.532 470 323 7 31 492 54 504 2.27e-33 134
MS.gene071893.t1 MTR_7g087410 23.830 470 329 4 16 479 28 474 4.81e-33 132
MS.gene071893.t1 MTR_3g099720 22.759 435 319 3 50 484 72 489 1.39e-32 130
MS.gene071893.t1 MTR_7g087430 24.570 407 276 3 78 477 1 383 5.70e-32 127
MS.gene071893.t1 MTR_7g087400 21.622 481 329 5 5 477 30 470 1.82e-31 127
MS.gene071893.t1 MTR_3g099700 23.899 477 341 6 4 477 31 488 2.98e-31 127
MS.gene071893.t1 MTR_6g047640 23.516 455 303 6 19 469 31 444 6.54e-30 122
MS.gene071893.t1 MTR_7g087410 23.153 406 287 2 78 479 1 385 1.67e-29 120
MS.gene071893.t1 MTR_6g047640 24.176 455 319 5 19 469 31 463 1.86e-29 121
MS.gene071893.t1 MTR_6g047590 24.169 451 323 3 19 469 31 462 1.60e-28 118
MS.gene071893.t1 MTR_7g087370 21.086 479 315 4 7 477 18 441 1.89e-25 109
MS.gene071893.t1 MTR_6g027200 22.068 503 355 6 3 490 20 500 1.96e-23 103
MS.gene071893.t1 MTR_5g087930 22.319 457 310 7 34 483 41 459 1.26e-21 98.2
MS.gene071893.t1 MTR_6g027190 22.293 471 331 8 8 469 13 457 2.48e-19 91.3
MS.gene071893.t1 MTR_2g078990 24.766 214 161 0 262 475 87 300 3.98e-17 82.8
MS.gene071893.t1 MTR_2g079030 26.923 208 148 3 274 480 319 523 3.35e-15 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071893.t1 AT5G49130 62.279 509 175 4 1 500 1 501 0.0 619
MS.gene071893.t1 AT1G71870 45.509 501 262 4 3 493 7 506 1.41e-154 450
MS.gene071893.t1 AT4G29140 43.902 492 253 3 4 495 40 508 1.28e-144 426
MS.gene071893.t1 AT5G19700 43.408 493 255 6 4 492 20 492 1.38e-137 407
MS.gene071893.t1 AT5G52050 42.431 469 256 2 18 484 33 489 4.51e-135 400
MS.gene071893.t1 AT1G58340 44.161 471 247 3 9 479 47 501 6.63e-133 396
MS.gene071893.t1 AT4G23030 43.265 490 243 5 5 483 14 479 1.56e-120 363
MS.gene071893.t1 AT2G38510 36.917 493 292 5 16 507 2 476 2.50e-117 354
MS.gene071893.t1 AT4G22790 33.400 503 300 6 1 492 1 479 1.74e-78 254
MS.gene071893.t1 AT5G52450 29.630 486 322 4 10 492 13 481 2.03e-66 222
MS.gene071893.t1 AT1G15150 30.131 458 300 3 20 475 31 470 5.67e-65 218
MS.gene071893.t1 AT1G64820 30.769 494 313 6 18 505 27 497 5.93e-65 219
MS.gene071893.t1 AT1G15170 30.482 456 301 2 20 475 34 473 1.41e-64 217
MS.gene071893.t1 AT2G04080 28.782 476 319 4 4 477 11 468 2.20e-60 206
MS.gene071893.t1 AT1G71140 29.158 463 308 4 20 480 26 470 2.40e-60 206
MS.gene071893.t1 AT2G34360 27.968 497 323 6 1 487 1 472 3.06e-60 206
MS.gene071893.t1 AT1G15180 31.878 458 292 4 20 475 35 474 3.63e-60 206
MS.gene071893.t1 AT1G66760 29.004 462 312 3 19 480 27 472 4.56e-60 205
MS.gene071893.t1 AT1G15160 29.630 459 299 5 20 474 31 469 5.90e-60 205
MS.gene071893.t1 AT2G04100 28.390 472 321 3 7 477 16 471 6.05e-60 205
MS.gene071893.t1 AT2G04040 29.512 471 315 3 7 477 15 468 1.59e-59 204
MS.gene071893.t1 AT2G04070 29.231 455 306 2 20 474 27 465 4.47e-59 202
MS.gene071893.t1 AT2G04050 31.102 463 299 4 14 474 21 465 7.30e-59 202
MS.gene071893.t1 AT2G04080 28.846 468 313 4 4 469 11 460 1.07e-58 201
MS.gene071893.t1 AT2G04100 28.448 464 315 3 7 469 16 463 2.35e-58 201
MS.gene071893.t1 AT1G66780 29.841 439 292 2 39 477 54 476 2.28e-56 196
MS.gene071893.t1 AT1G66760 29.047 451 304 3 19 469 27 461 2.82e-56 195
MS.gene071893.t1 AT1G73700 28.205 468 320 2 13 480 17 468 5.48e-56 194
MS.gene071893.t1 AT2G04090 26.819 481 331 5 6 483 15 477 1.37e-54 191
MS.gene071893.t1 AT1G15170 29.973 367 241 2 109 475 4 354 3.78e-52 181
MS.gene071893.t1 AT1G11670 25.714 455 322 4 20 474 50 488 1.82e-49 177
MS.gene071893.t1 AT1G61890 25.658 456 323 4 20 475 47 486 8.85e-48 173
MS.gene071893.t1 AT1G15150 29.396 364 237 3 114 475 9 354 1.28e-46 166
MS.gene071893.t1 AT1G61890 25.333 450 320 4 20 469 47 480 2.01e-46 169
MS.gene071893.t1 AT3G23550 26.872 454 310 3 18 468 29 463 1.67e-43 160
MS.gene071893.t1 AT1G66760 29.076 368 245 3 19 386 27 378 8.04e-43 157
MS.gene071893.t1 AT3G21690 24.835 455 326 3 20 474 52 490 4.64e-42 157
MS.gene071893.t1 AT1G61890 25.537 419 296 4 20 438 47 449 3.18e-41 154
MS.gene071893.t1 AT4G21903 26.047 430 291 6 50 474 83 490 3.29e-41 155
MS.gene071893.t1 AT3G59030 26.608 451 313 6 34 483 65 498 4.04e-41 154
MS.gene071893.t1 AT3G26590 24.512 461 321 7 20 475 45 483 4.76e-41 154
MS.gene071893.t1 AT4G21910 25.495 455 322 5 20 474 55 492 6.78e-41 154
MS.gene071893.t1 AT4G21910 25.495 455 322 5 20 474 55 492 6.78e-41 154
MS.gene071893.t1 AT4G21903 25.676 444 299 7 50 484 83 504 3.62e-40 152
MS.gene071893.t1 AT5G38030 24.262 474 329 8 20 485 45 496 8.46e-40 150
MS.gene071893.t1 AT4G21910 24.781 456 326 5 20 475 57 495 2.87e-39 149
MS.gene071893.t1 AT4G21910 24.781 456 326 5 20 475 57 495 2.87e-39 149
MS.gene071893.t1 AT3G23560 25.212 472 327 4 4 468 19 471 1.03e-38 147
MS.gene071893.t1 AT4G21903 25.377 398 273 4 81 474 4 381 1.24e-38 145
MS.gene071893.t1 AT3G26590 24.623 398 277 5 81 475 4 381 2.68e-38 144
MS.gene071893.t1 AT1G12950 24.249 466 320 8 20 477 67 507 1.10e-37 145
MS.gene071893.t1 AT4G00350 23.799 458 331 2 18 475 86 525 2.61e-37 144
MS.gene071893.t1 AT5G44050 25.000 480 327 8 2 474 25 478 6.04e-37 142
MS.gene071893.t1 AT1G66760 27.666 347 235 3 123 469 3 333 2.96e-35 135
MS.gene071893.t1 AT1G47530 23.391 466 332 5 16 477 31 475 1.30e-34 136
MS.gene071893.t1 AT1G15180 30.496 282 176 4 109 388 4 267 3.18e-34 134
MS.gene071893.t1 AT1G23300 24.165 509 349 7 3 499 20 503 1.49e-33 133
MS.gene071893.t1 AT4G25640 22.838 451 328 2 20 469 34 465 1.13e-32 130
MS.gene071893.t1 AT4G25640 22.838 451 328 2 20 469 34 465 1.44e-32 130
MS.gene071893.t1 AT3G23560 25.459 381 258 4 4 377 19 380 1.06e-31 126
MS.gene071893.t1 AT1G33090 24.790 476 323 7 8 469 14 468 4.72e-31 126
MS.gene071893.t1 AT5G10420 23.974 463 328 6 16 474 34 476 6.32e-31 125
MS.gene071893.t1 AT5G65380 24.689 482 340 5 2 477 14 478 4.98e-30 123
MS.gene071893.t1 AT1G33100 24.336 452 321 4 20 469 33 465 7.32e-30 122
MS.gene071893.t1 AT1G33110 23.840 474 330 5 8 469 14 468 7.17e-29 119
MS.gene071893.t1 AT1G47530 23.250 400 282 5 82 477 5 383 1.68e-28 117
MS.gene071893.t1 AT4G25640 22.275 422 308 2 20 440 34 436 8.07e-28 116
MS.gene071893.t1 AT1G33080 23.557 433 300 5 49 474 65 473 1.11e-27 116
MS.gene071893.t1 AT1G33080 23.877 423 301 4 49 469 65 468 3.46e-27 115
MS.gene071893.t1 AT2G34360 26.087 230 163 1 1 223 1 230 1.12e-26 112
MS.gene071893.t1 AT2G34360 35.366 164 104 1 312 475 257 418 1.52e-20 94.7
MS.gene071893.t1 AT3G59030 25.815 368 247 6 34 396 65 411 4.61e-26 110
MS.gene071893.t1 AT3G03620 22.105 475 337 6 3 469 20 469 2.25e-24 106
MS.gene071893.t1 AT3G03620 22.105 475 337 6 3 469 20 469 2.25e-24 106
MS.gene071893.t1 AT5G17700 20.459 479 348 6 5 475 19 472 3.42e-21 97.1
MS.gene071893.t1 AT5G17700 20.459 479 348 6 5 475 19 472 3.42e-21 97.1

Find 125 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCTCACATTTGATTATT+TGG 0.125287 2.2:+52879036 None:intergenic
ACCGGTTACTCAGTCCTTTC+AGG 0.200835 2.2:-52880301 MS.gene071893:CDS
GTTCAACATTAGGGTTATTA+TGG 0.202311 2.2:-52879460 MS.gene071893:CDS
CATTACCCATTTCACTCTTA+TGG 0.213896 2.2:-52880171 MS.gene071893:CDS
CAGTTGTCGGGTATGTCTTT+TGG 0.247868 2.2:+52880893 None:intergenic
GGAGTGCAAGGCCAGGTATT+GGG 0.276246 2.2:-52879295 MS.gene071893:CDS
AAGAATGGGGCATGTTAATA+AGG 0.284500 2.2:-52879742 MS.gene071893:CDS
GTTGACAAATTTGCCTTTGA+TGG 0.291782 2.2:+52879512 None:intergenic
GAAGAAAAGGGTATTGAAAT+TGG 0.308573 2.2:+52879883 None:intergenic
ACTATGCTCATGGCTGCTAT+TGG 0.316954 2.2:+52880421 None:intergenic
TCACTAGCAAGTTCAACATT+AGG 0.321641 2.2:-52879470 MS.gene071893:CDS
TGTAGAACATGTATGATAAA+AGG 0.326149 2.2:+52879861 None:intergenic
GTTGTTTGCATGGGAAAGTT+AGG 0.349313 2.2:-52880373 MS.gene071893:CDS
CACTAGCAAGTTCAACATTA+GGG 0.353538 2.2:-52879469 MS.gene071893:CDS
AACTCACAAACACCAATTAT+AGG 0.359394 2.2:+52879359 None:intergenic
GGGTTATTATGGACAACATT+AGG 0.362622 2.2:-52879449 MS.gene071893:CDS
TGAGTTAGCAAGTGGTGCTT+TGG 0.364654 2.2:-52880344 MS.gene071893:CDS
AAAGGCAAATTTGTCAACTA+TGG 0.374974 2.2:-52879507 MS.gene071893:CDS
ACTAGTTGTGGAATGCTTAG+AGG 0.390010 2.2:-52879317 MS.gene071893:CDS
TGTATGATAAAAGGAAGAAA+AGG 0.401130 2.2:+52879870 None:intergenic
GCAAGTGGTGCTTTGGCCAT+AGG 0.404906 2.2:-52880337 MS.gene071893:CDS
CTATGCTCATGGCTGCTATT+GGG 0.407811 2.2:+52880422 None:intergenic
TTGTCAACTATGGTAGCAAT+TGG 0.413667 2.2:-52879497 MS.gene071893:CDS
ATTGAGCCATAAGAGTGAAA+TGG 0.414138 2.2:+52880165 None:intergenic
GGGAGTGCAAGGCCAGGTAT+TGG 0.419436 2.2:-52879296 MS.gene071893:CDS
AAGGTTAAGAAAATGATGAT+AGG 0.422391 2.2:+52879953 None:intergenic
ACCTGAAAGGACTGAGTAAC+CGG 0.424046 2.2:+52880300 None:intergenic
AACCCCAACACTATTCCTAT+TGG 0.430761 2.2:+52879233 None:intergenic
GTCTTGGAGTTTGCTTAGAA+TGG 0.433878 2.2:-52879703 MS.gene071893:CDS
GATGATAACAAGGGAGGACT+AGG 0.437114 2.2:+52879803 None:intergenic
AGTGAAGTACACCACAATAA+TGG 0.439407 2.2:+52879995 None:intergenic
TTGAGCCATAAGAGTGAAAT+GGG 0.442590 2.2:+52880166 None:intergenic
GCGCCAATAGGAATAGTGTT+GGG 0.442712 2.2:-52879236 MS.gene071893:CDS
CATGATCTTAGTTGTTTGCA+TGG 0.446886 2.2:-52880383 MS.gene071893:CDS
ACCGACGGCACTTAGTGCTT+CGG 0.461028 2.2:-52879573 MS.gene071893:CDS
TACACCAAGGTGAAGTTTGA+AGG 0.461500 2.2:+52879934 None:intergenic
CATGCCCCATTCTTTGCCTA+GGG 0.463542 2.2:+52879751 None:intergenic
TTTATCCCTGCCCCAATACC+TGG 0.465679 2.2:+52879284 None:intergenic
ACATGCCCCATTCTTTGCCT+AGG 0.465944 2.2:+52879750 None:intergenic
TTGTGGTATATAACACTGAT+TGG 0.471072 2.2:-52879133 MS.gene071893:CDS
TCAAAACCCTAGGCAAAGAA+TGG 0.471654 2.2:-52879757 MS.gene071893:CDS
ATAGCAGCCATGAGCATAGT+AGG 0.475953 2.2:-52880418 MS.gene071893:CDS
AACTCCAAGACAACTTTGAA+TGG 0.476284 2.2:+52879715 None:intergenic
CAAAACCCTAGGCAAAGAAT+GGG 0.476376 2.2:-52879756 MS.gene071893:CDS
GCAAGGCCAGGTATTGGGGC+AGG 0.476495 2.2:-52879290 MS.gene071893:CDS
ATAGGCTTCACCAATGTAAC+CGG 0.479266 2.2:-52880319 MS.gene071893:CDS
ATTCCACAACTAGTTGTTTG+TGG 0.480040 2.2:+52879326 None:intergenic
AAACTTCACCTTGGTGTACA+AGG 0.480431 2.2:-52879929 MS.gene071893:CDS
TGATGAAGGGATAACATGAA+TGG 0.481239 2.2:+52880136 None:intergenic
ATCGTACCTCAGCAGTTGTC+GGG 0.482070 2.2:+52880881 None:intergenic
AATAGATGCGGATCGGATGA+AGG 0.484025 2.2:+52880041 None:intergenic
CTCTTGTTGTGATGATAACA+AGG 0.487105 2.2:+52879793 None:intergenic
GATAGGGATATGAATGATAA+CGG 0.502534 2.2:+52879970 None:intergenic
GAGTGCAAGGCCAGGTATTG+GGG 0.506676 2.2:-52879294 MS.gene071893:CDS
GTATGATAAAAGGAAGAAAA+GGG 0.508071 2.2:+52879871 None:intergenic
GGTTACATTGGTGAAGCCTA+TGG 0.510196 2.2:+52880321 None:intergenic
GCTTCGGTTTCAACAAGGGT+AGG 0.520507 2.2:-52879557 MS.gene071893:CDS
GGTGTTCACAAATGATAAAG+AGG 0.524145 2.2:-52879408 MS.gene071893:CDS
ATGATCTTAGTTGTTTGCAT+GGG 0.527005 2.2:-52880382 MS.gene071893:CDS
GAGGCTATTCGCTATAAGAT+CGG 0.528355 2.2:+52880063 None:intergenic
GAATCGATAGGCGACAATAG+AGG 0.528699 2.2:+52880086 None:intergenic
GAGTTTGCTTAGAATGGTGG+TGG 0.529737 2.2:-52879697 MS.gene071893:CDS
GTAGGGAATGCACTTGGAGC+TGG 0.530874 2.2:-52879539 MS.gene071893:CDS
AAGGTATCCTACTATGCTCA+TGG 0.532294 2.2:+52880411 None:intergenic
AGGCTATTCGCTATAAGATC+GGG 0.539074 2.2:+52880064 None:intergenic
CTAGTTGTGGAATGCTTAGA+GGG 0.539611 2.2:-52879316 MS.gene071893:CDS
CGTGTAGCTTTAGCCACGGC+GGG 0.541296 2.2:-52879632 MS.gene071893:CDS
GTCCTTTCAGGTCTAGCCAT+GGG 0.551373 2.2:-52880289 MS.gene071893:CDS
AGGTTAAGAAAATGATGATA+GGG 0.552617 2.2:+52879954 None:intergenic
AAGCTACACGAGGGTTGTAA+AGG 0.553073 2.2:+52879645 None:intergenic
TTCAGGTCTAGCCATGGGAA+TGG 0.554899 2.2:-52880284 MS.gene071893:CDS
TGTGGTATATAACACTGATT+GGG 0.556810 2.2:-52879132 MS.gene071893:CDS
GAACAACTTGGCCATTATTG+TGG 0.558363 2.2:-52880006 MS.gene071893:CDS
TGTGGTATCAATTCTTGTTG+TGG 0.558880 2.2:-52879150 MS.gene071893:CDS
CGCATCTATTTACGTAGCAA+AGG 0.559351 2.2:-52880028 MS.gene071893:CDS
TGGAGCTGGTCAACCATCAA+AGG 0.562155 2.2:-52879525 MS.gene071893:CDS
GACTGAGTAACCGGTTACAT+TGG 0.562773 2.2:+52880309 None:intergenic
GGACGAGCTAAAGAGAATGA+TGG 0.563900 2.2:-52880455 MS.gene071893:CDS
CGCCAATAGGAATAGTGTTG+GGG 0.568084 2.2:-52879235 MS.gene071893:CDS
CTTAGAGGGAGTGCAAGGCC+AGG 0.570090 2.2:-52879302 MS.gene071893:CDS
GAGTTCATGACAATTCTAGC+TGG 0.573693 2.2:-52879671 MS.gene071893:CDS
CAAGGCCAGGTATTGGGGCA+GGG 0.575030 2.2:-52879289 MS.gene071893:CDS
TTGGAGTTTGCTTAGAATGG+TGG 0.575348 2.2:-52879700 MS.gene071893:CDS
CTTCGGTTTCAACAAGGGTA+GGG 0.577980 2.2:-52879556 MS.gene071893:CDS
TGTCCACAAACAACTAGTTG+TGG 0.580606 2.2:-52879329 MS.gene071893:CDS
GGCGCCAATAGGAATAGTGT+TGG 0.580799 2.2:-52879237 MS.gene071893:CDS
TATCGTACCTCAGCAGTTGT+CGG 0.582160 2.2:+52880880 None:intergenic
ACAAGGGTAGGGAATGCACT+TGG 0.586849 2.2:-52879545 MS.gene071893:CDS
CCTCTATGTACTCAAGCCAT+TGG 0.587982 2.2:-52880259 MS.gene071893:CDS
TTAACCTTCAAACTTCACCT+TGG 0.590547 2.2:-52879938 MS.gene071893:CDS
CTAAAGAGAATGATGGACAT+AGG 0.590660 2.2:-52880448 MS.gene071893:CDS
TTGGGAAAGAGAGTCATTGA+AGG 0.590950 2.2:-52879114 MS.gene071893:CDS
CTATAAGATCGGGAATCGAT+AGG 0.591963 2.2:+52880074 None:intergenic
TACGTAGCAAAGGAACAACT+TGG 0.600971 2.2:-52880018 MS.gene071893:CDS
AGTCCTTTCAGGTCTAGCCA+TGG 0.601305 2.2:-52880290 MS.gene071893:CDS
CCCTCGTGTAGCTTTAGCCA+CGG 0.602755 2.2:-52879636 MS.gene071893:CDS
AAGCACCACTTGCTAACTCA+AGG 0.604905 2.2:+52880347 None:intergenic
GGGAGGACTAGGGATAGGTA+TGG 0.606479 2.2:+52879814 None:intergenic
ACATAGAGGTTCCATTCCCA+TGG 0.608224 2.2:+52880273 None:intergenic
GAATGCTTAGAGGGAGTGCA+AGG 0.609636 2.2:-52879307 MS.gene071893:CDS
TTAGTGCTTCGGTTTCAACA+AGG 0.611369 2.2:-52879562 MS.gene071893:CDS
CCAACAAGTGTCAAAACCCT+AGG 0.611672 2.2:-52879767 MS.gene071893:CDS
TTCCCATGGCTAGACCTGAA+AGG 0.612296 2.2:+52880287 None:intergenic
CTTTGCTACGTAAATAGATG+CGG 0.615527 2.2:+52880029 None:intergenic
CCAATGGCTTGAGTACATAG+AGG 0.619410 2.2:+52880259 None:intergenic
ACTTATGTACACTTTACCGA+CGG 0.625353 2.2:-52879588 MS.gene071893:CDS
ATGATAACAAGGGAGGACTA+GGG 0.629298 2.2:+52879804 None:intergenic
GGAAGCCTTGAGTTAGCAAG+TGG 0.631750 2.2:-52880352 MS.gene071893:CDS
CTACGTAAATAGATGCGGAT+CGG 0.631810 2.2:+52880034 None:intergenic
AACAAGGGAGGACTAGGGAT+AGG 0.632327 2.2:+52879809 None:intergenic
TTGTATTACTATTCCCGCCG+TGG 0.632361 2.2:+52879619 None:intergenic
TAGTGCTTCGGTTTCAACAA+GGG 0.633465 2.2:-52879561 MS.gene071893:CDS
ACCGAAGCACTAAGTGCCGT+CGG 0.645077 2.2:+52879572 None:intergenic
GGTGTTAGAGTTGACAATGG+CGG 0.648706 2.2:-52879387 MS.gene071893:CDS
TCTTGTTGTGATGATAACAA+GGG 0.651593 2.2:+52879794 None:intergenic
GACATACCCGACAACTGCTG+AGG 0.660676 2.2:-52880887 MS.gene071893:intron
TGTTGTGATGATAACAAGGG+AGG 0.670573 2.2:+52879797 None:intergenic
GGCAGCACAAATAGCATGTG+TGG 0.671756 2.2:-52879168 MS.gene071893:CDS
GCCGTGGCTAAAGCTACACG+AGG 0.684997 2.2:+52879635 None:intergenic
AGATGCGGATCGGATGAAGG+AGG 0.692679 2.2:+52880044 None:intergenic
AAAACCCTAGGCAAAGAATG+GGG 0.698680 2.2:-52879755 MS.gene071893:CDS
AGAGGTGTTAGAGTTGACAA+TGG 0.702435 2.2:-52879390 MS.gene071893:CDS
TCGTGTAGCTTTAGCCACGG+CGG 0.710232 2.2:-52879633 MS.gene071893:CDS
TAGCAATACCTTGTACACCA+AGG 0.710910 2.2:+52879921 None:intergenic
CCGTGGCTAAAGCTACACGA+GGG 0.768897 2.2:+52879636 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATGATATATATTTTTTTT+TGG + chr2.2:52879320-52879339 None:intergenic 10.0%
!!! AAATTTTTACTCATTTTACT+TGG - chr2.2:52880656-52880675 MS.gene071893:intron 15.0%
!!! TGTTTTTGTTTTGTTTTTTC+AGG - chr2.2:52879438-52879457 MS.gene071893:CDS 20.0%
! AACATTAGGAAGAGAAAAAT+GGG - chr2.2:52880485-52880504 MS.gene071893:intron 25.0%
! AAGGTTAAGAAAATGATGAT+AGG + chr2.2:52879970-52879989 None:intergenic 25.0%
! ACTATGAGTATATAGTATGA+GGG + chr2.2:52879123-52879142 None:intergenic 25.0%
! ACTCATAGTATATACTTACA+TGG - chr2.2:52879134-52879153 MS.gene071893:CDS 25.0%
! AGGTTAAGAAAATGATGATA+GGG + chr2.2:52879969-52879988 None:intergenic 25.0%
! ATGAAAAATGTGAAAACCAT+GGG + chr2.2:52879083-52879102 None:intergenic 25.0%
! CTATGATATTGATGAAGAAA+TGG + chr2.2:52879285-52879304 None:intergenic 25.0%
! GAAATGGTATATGAAAACTA+TGG + chr2.2:52879269-52879288 None:intergenic 25.0%
! GCTTAGCATATATATTAACA+TGG - chr2.2:52879354-52879373 MS.gene071893:CDS 25.0%
! GTATGATAAAAGGAAGAAAA+GGG + chr2.2:52880052-52880071 None:intergenic 25.0%
! TACTATGAGTATATAGTATG+AGG + chr2.2:52879124-52879143 None:intergenic 25.0%
! TATGAAAAATGTGAAAACCA+TGG + chr2.2:52879084-52879103 None:intergenic 25.0%
! TGTAGAACATGTATGATAAA+AGG + chr2.2:52880062-52880081 None:intergenic 25.0%
! TGTATGATAAAAGGAAGAAA+AGG + chr2.2:52880053-52880072 None:intergenic 25.0%
!! TTTTACTCATTTTACTTGGT+GGG - chr2.2:52880660-52880679 MS.gene071893:intron 25.0%
!! TTTTTACTCATTTTACTTGG+TGG - chr2.2:52880659-52880678 MS.gene071893:intron 25.0%
!!! CAACTAAGATCATGTTTTTA+AGG + chr2.2:52879531-52879550 None:intergenic 25.0%
!!! TATGTCTTGATTTTGATGAA+GGG + chr2.2:52879800-52879819 None:intergenic 25.0%
!!! TTATGTCTTGATTTTGATGA+AGG + chr2.2:52879801-52879820 None:intergenic 25.0%
!!! TTTTGTTTTGTTTTTTCAGG+TGG - chr2.2:52879441-52879460 MS.gene071893:CDS 25.0%
AAAGGCAAATTTGTCAACTA+TGG - chr2.2:52880413-52880432 MS.gene071893:CDS 30.0%
AACTCACAAACACCAATTAT+AGG + chr2.2:52880564-52880583 None:intergenic 30.0%
ACATTAGGAAGAGAAAAATG+GGG - chr2.2:52880486-52880505 MS.gene071893:intron 30.0%
AGACATAGTTTAAAAGAGTG+AGG + chr2.2:52879393-52879412 None:intergenic 30.0%
ATGATCTTAGTTGTTTGCAT+GGG - chr2.2:52879538-52879557 MS.gene071893:CDS 30.0%
CAACATTAGGAAGAGAAAAA+TGG - chr2.2:52880484-52880503 MS.gene071893:intron 30.0%
CTTGCTCACATTTGATTATT+TGG + chr2.2:52880887-52880906 None:intergenic 30.0%
GATAGGGATATGAATGATAA+CGG + chr2.2:52879953-52879972 None:intergenic 30.0%
GTTCAACATTAGGGTTATTA+TGG - chr2.2:52880460-52880479 MS.gene071893:CDS 30.0%
TTGTGGTATATAACACTGAT+TGG - chr2.2:52880787-52880806 MS.gene071893:intron 30.0%
! TCTTGTTGTGATGATAACAA+GGG + chr2.2:52880129-52880148 None:intergenic 30.0%
! TGTGGTATATAACACTGATT+GGG - chr2.2:52880788-52880807 MS.gene071893:intron 30.0%
! TTTTCCATTCAAAGTTGTCT+TGG - chr2.2:52880201-52880220 MS.gene071893:CDS 30.0%
!! GAAGAAAAGGGTATTGAAAT+TGG + chr2.2:52880040-52880059 None:intergenic 30.0%
!! TTTACTCATTTTACTTGGTG+GGG - chr2.2:52880661-52880680 MS.gene071893:intron 30.0%
!!! GTTTGTTTTGAAATTAGGGT+TGG - chr2.2:52880707-52880726 MS.gene071893:intron 30.0%
!!! TGGGGTTTGTTTTGAAATTA+GGG - chr2.2:52880703-52880722 MS.gene071893:intron 30.0%
!!! TTGGGGTTTGTTTTGAAATT+AGG - chr2.2:52880702-52880721 MS.gene071893:intron 30.0%
AACTCCAAGACAACTTTGAA+TGG + chr2.2:52880208-52880227 None:intergenic 35.0%
AAGAATGGGGCATGTTAATA+AGG - chr2.2:52880178-52880197 MS.gene071893:CDS 35.0%
ACTTATGTACACTTTACCGA+CGG - chr2.2:52880332-52880351 MS.gene071893:CDS 35.0%
AGTGAAGTACACCACAATAA+TGG + chr2.2:52879928-52879947 None:intergenic 35.0%
ATACCATACAAAATCTCCCA+TGG - chr2.2:52879064-52879083 MS.gene071893:CDS 35.0%
ATTCCACAACTAGTTGTTTG+TGG + chr2.2:52880597-52880616 None:intergenic 35.0%
ATTGAGCCATAAGAGTGAAA+TGG + chr2.2:52879758-52879777 None:intergenic 35.0%
CACTAGCAAGTTCAACATTA+GGG - chr2.2:52880451-52880470 MS.gene071893:CDS 35.0%
CATGATCTTAGTTGTTTGCA+TGG - chr2.2:52879537-52879556 MS.gene071893:CDS 35.0%
CATTACCCATTTCACTCTTA+TGG - chr2.2:52879749-52879768 MS.gene071893:CDS 35.0%
CATTAGGAAGAGAAAAATGG+GGG - chr2.2:52880487-52880506 MS.gene071893:intron 35.0%
CTTTGCTACGTAAATAGATG+CGG + chr2.2:52879894-52879913 None:intergenic 35.0%
GGGTTATTATGGACAACATT+AGG - chr2.2:52880471-52880490 MS.gene071893:intron 35.0%
GGTGTTCACAAATGATAAAG+AGG - chr2.2:52880512-52880531 MS.gene071893:intron 35.0%
GTTGACAAATTTGCCTTTGA+TGG + chr2.2:52880411-52880430 None:intergenic 35.0%
TCACTAGCAAGTTCAACATT+AGG - chr2.2:52880450-52880469 MS.gene071893:CDS 35.0%
TGATGAAGGGATAACATGAA+TGG + chr2.2:52879787-52879806 None:intergenic 35.0%
TGTGGTATCAATTCTTGTTG+TGG - chr2.2:52880770-52880789 MS.gene071893:intron 35.0%
TTAACCTTCAAACTTCACCT+TGG - chr2.2:52879982-52880001 MS.gene071893:CDS 35.0%
TTGAGCCATAAGAGTGAAAT+GGG + chr2.2:52879757-52879776 None:intergenic 35.0%
TTGTCAACTATGGTAGCAAT+TGG - chr2.2:52880423-52880442 MS.gene071893:CDS 35.0%
! AAACCATGGGAGATTTTGTA+TGG + chr2.2:52879070-52879089 None:intergenic 35.0%
! ATGGCGGTTTTACCTATAAT+TGG - chr2.2:52880549-52880568 MS.gene071893:intron 35.0%
! CTCTTGTTGTGATGATAACA+AGG + chr2.2:52880130-52880149 None:intergenic 35.0%
!! AGAGAAGTTTTGTGAACCAA+TGG + chr2.2:52879680-52879699 None:intergenic 35.0%
!! CTAAAGAGAATGATGGACAT+AGG - chr2.2:52879472-52879491 MS.gene071893:CDS 35.0%
!! TTACTCATTTTACTTGGTGG+GGG - chr2.2:52880662-52880681 MS.gene071893:intron 35.0%
!!! GTTTTGAAATTAGGGTTGGT+GGG - chr2.2:52880711-52880730 MS.gene071893:intron 35.0%
!!! TGTTTTGAAATTAGGGTTGG+TGG - chr2.2:52880710-52880729 MS.gene071893:intron 35.0%
!!! TGTTTTGTTTTTTCAGGTGG+TGG - chr2.2:52879444-52879463 MS.gene071893:CDS 35.0%
!!! TTTTGAAATTAGGGTTGGTG+GGG - chr2.2:52880712-52880731 MS.gene071893:intron 35.0%
AAAACCCTAGGCAAAGAATG+GGG - chr2.2:52880165-52880184 MS.gene071893:CDS 40.0%
AAAAGAGTGAGGCTGCATAA+AGG + chr2.2:52879382-52879401 None:intergenic 40.0%
AACCCCAACACTATTCCTAT+TGG + chr2.2:52880690-52880709 None:intergenic 40.0%
ACTAGTTGTGGAATGCTTAG+AGG - chr2.2:52880603-52880622 MS.gene071893:intron 40.0%
AGGCTATTCGCTATAAGATC+GGG + chr2.2:52879859-52879878 None:intergenic 40.0%
ATAGGCTTCACCAATGTAAC+CGG - chr2.2:52879601-52879620 MS.gene071893:CDS 40.0%
ATGATAACAAGGGAGGACTA+GGG + chr2.2:52880119-52880138 None:intergenic 40.0%
ATTGAAGGCAAAAAGCTTGG+TGG - chr2.2:52880821-52880840 MS.gene071893:intron 40.0%
CAAAACCCTAGGCAAAGAAT+GGG - chr2.2:52880164-52880183 MS.gene071893:CDS 40.0%
CGCATCTATTTACGTAGCAA+AGG - chr2.2:52879892-52879911 MS.gene071893:CDS 40.0%
CTACGTAAATAGATGCGGAT+CGG + chr2.2:52879889-52879908 None:intergenic 40.0%
CTAGTTGTGGAATGCTTAGA+GGG - chr2.2:52880604-52880623 MS.gene071893:intron 40.0%
CTATAAGATCGGGAATCGAT+AGG + chr2.2:52879849-52879868 None:intergenic 40.0%
GAACAACTTGGCCATTATTG+TGG - chr2.2:52879914-52879933 MS.gene071893:CDS 40.0%
GAGGCTATTCGCTATAAGAT+CGG + chr2.2:52879860-52879879 None:intergenic 40.0%
GAGTTCATGACAATTCTAGC+TGG - chr2.2:52880249-52880268 MS.gene071893:CDS 40.0%
GTCATTGAAGGCAAAAAGCT+TGG - chr2.2:52880818-52880837 MS.gene071893:intron 40.0%
GTTGTTTGCATGGGAAAGTT+AGG - chr2.2:52879547-52879566 MS.gene071893:CDS 40.0%
TACACCAAGGTGAAGTTTGA+AGG + chr2.2:52879989-52880008 None:intergenic 40.0%
TACGTAGCAAAGGAACAACT+TGG - chr2.2:52879902-52879921 MS.gene071893:CDS 40.0%
TAGCAATACCTTGTACACCA+AGG + chr2.2:52880002-52880021 None:intergenic 40.0%
TAGTGCTTCGGTTTCAACAA+GGG - chr2.2:52880359-52880378 MS.gene071893:CDS 40.0%
TCAAAACCCTAGGCAAAGAA+TGG - chr2.2:52880163-52880182 MS.gene071893:CDS 40.0%
TGTCCACAAACAACTAGTTG+TGG - chr2.2:52880591-52880610 MS.gene071893:intron 40.0%
TGTTGTGATGATAACAAGGG+AGG + chr2.2:52880126-52880145 None:intergenic 40.0%
TTAGTGCTTCGGTTTCAACA+AGG - chr2.2:52880358-52880377 MS.gene071893:CDS 40.0%
TTGAAGGCAAAAAGCTTGGT+GGG - chr2.2:52880822-52880841 MS.gene071893:intron 40.0%
TTGGGAAAGAGAGTCATTGA+AGG - chr2.2:52880806-52880825 MS.gene071893:intron 40.0%
! AAACTTCACCTTGGTGTACA+AGG - chr2.2:52879991-52880010 MS.gene071893:CDS 40.0%
! AAGGTATCCTACTATGCTCA+TGG + chr2.2:52879512-52879531 None:intergenic 40.0%
! AGTTGTCGGGTATGTCTTTT+GGG + chr2.2:52879029-52879048 None:intergenic 40.0%
! GTCTTGGAGTTTGCTTAGAA+TGG - chr2.2:52880217-52880236 MS.gene071893:CDS 40.0%
! TTGGAGTTTGCTTAGAATGG+TGG - chr2.2:52880220-52880239 MS.gene071893:CDS 40.0%
!! AGAGGTGTTAGAGTTGACAA+TGG - chr2.2:52880530-52880549 MS.gene071893:intron 40.0%
!!! GGGGTTTTGTTATGGTTTGT+TGG - chr2.2:52880731-52880750 MS.gene071893:intron 40.0%
AAGCTACACGAGGGTTGTAA+AGG + chr2.2:52880278-52880297 None:intergenic 45.0%
AATAGATGCGGATCGGATGA+AGG + chr2.2:52879882-52879901 None:intergenic 45.0%
ACATAGAGGTTCCATTCCCA+TGG + chr2.2:52879650-52879669 None:intergenic 45.0%
ACCTGAAAGGACTGAGTAAC+CGG + chr2.2:52879623-52879642 None:intergenic 45.0%
ACTATGCTCATGGCTGCTAT+TGG + chr2.2:52879502-52879521 None:intergenic 45.0%
AGGAAGAGAAAAATGGGGGA+AGG - chr2.2:52880491-52880510 MS.gene071893:intron 45.0%
ATAGCAGCCATGAGCATAGT+AGG - chr2.2:52879502-52879521 MS.gene071893:CDS 45.0%
CCAACAAGTGTCAAAACCCT+AGG - chr2.2:52880153-52880172 MS.gene071893:CDS 45.0%
CCAATGGCTTGAGTACATAG+AGG + chr2.2:52879664-52879683 None:intergenic 45.0%
CCTCTATGTACTCAAGCCAT+TGG - chr2.2:52879661-52879680 MS.gene071893:CDS 45.0%
CGCCAATAGGAATAGTGTTG+GGG - chr2.2:52880685-52880704 MS.gene071893:intron 45.0%
CTATGCTCATGGCTGCTATT+GGG + chr2.2:52879501-52879520 None:intergenic 45.0%
CTGACATTTGATCAGAGAGC+TGG - chr2.2:52879200-52879219 MS.gene071893:CDS 45.0%
CTTCGGTTTCAACAAGGGTA+GGG - chr2.2:52880364-52880383 MS.gene071893:CDS 45.0%
GAATCGATAGGCGACAATAG+AGG + chr2.2:52879837-52879856 None:intergenic 45.0%
GACTGAGTAACCGGTTACAT+TGG + chr2.2:52879614-52879633 None:intergenic 45.0%
GATGATAACAAGGGAGGACT+AGG + chr2.2:52880120-52880139 None:intergenic 45.0%
GCGCCAATAGGAATAGTGTT+GGG - chr2.2:52880684-52880703 MS.gene071893:intron 45.0%
GGACGAGCTAAAGAGAATGA+TGG - chr2.2:52879465-52879484 MS.gene071893:CDS 45.0%
GGTGTTAGAGTTGACAATGG+CGG - chr2.2:52880533-52880552 MS.gene071893:intron 45.0%
GGTTACATTGGTGAAGCCTA+TGG + chr2.2:52879602-52879621 None:intergenic 45.0%
TATCGTACCTCAGCAGTTGT+CGG + chr2.2:52879043-52879062 None:intergenic 45.0%
TGACATTTGACCAGAGAGAG+AGG + chr2.2:52879173-52879192 None:intergenic 45.0%
TGAGTTAGCAAGTGGTGCTT+TGG - chr2.2:52879576-52879595 MS.gene071893:CDS 45.0%
TGGTATAGCCGACCTTTAGT+CGG - chr2.2:52879220-52879239 MS.gene071893:CDS 45.0%
TTGTATTACTATTCCCGCCG+TGG + chr2.2:52880304-52880323 None:intergenic 45.0%
! AAGCACCACTTGCTAACTCA+AGG + chr2.2:52879576-52879595 None:intergenic 45.0%
! CAGTTGTCGGGTATGTCTTT+TGG + chr2.2:52879030-52879049 None:intergenic 45.0%
! GAGTTTGCTTAGAATGGTGG+TGG - chr2.2:52880223-52880242 MS.gene071893:CDS 45.0%
!! CCTAGGGTTTTGACACTTGT+TGG + chr2.2:52880156-52880175 None:intergenic 45.0%
AACAAGGGAGGACTAGGGAT+AGG + chr2.2:52880114-52880133 None:intergenic 50.0%
ACAAGGGTAGGGAATGCACT+TGG - chr2.2:52880375-52880394 MS.gene071893:CDS 50.0%
ACATGCCCCATTCTTTGCCT+AGG + chr2.2:52880173-52880192 None:intergenic 50.0%
ACCGGTTACTCAGTCCTTTC+AGG - chr2.2:52879619-52879638 MS.gene071893:CDS 50.0%
ATAGCCGACCTTTAGTCGGA+GGG - chr2.2:52879224-52879243 MS.gene071893:CDS 50.0%
ATCGTACCTCAGCAGTTGTC+GGG + chr2.2:52879042-52879061 None:intergenic 50.0%
CAGAGAGAGAGGCAGCAAAA+AGG + chr2.2:52879162-52879181 None:intergenic 50.0%
CATGCCCCATTCTTTGCCTA+GGG + chr2.2:52880172-52880191 None:intergenic 50.0%
GCTTCGGTTTCAACAAGGGT+AGG - chr2.2:52880363-52880382 MS.gene071893:CDS 50.0%
GGAAGCCTTGAGTTAGCAAG+TGG - chr2.2:52879568-52879587 MS.gene071893:CDS 50.0%
GGCAGCACAAATAGCATGTG+TGG - chr2.2:52880752-52880771 MS.gene071893:intron 50.0%
GGCGCCAATAGGAATAGTGT+TGG - chr2.2:52880683-52880702 MS.gene071893:intron 50.0%
GTTATGCTCCCTCCGACTAA+AGG + chr2.2:52879235-52879254 None:intergenic 50.0%
TATAGCCGACCTTTAGTCGG+AGG - chr2.2:52879223-52879242 MS.gene071893:CDS 50.0%
TGGAGCTGGTCAACCATCAA+AGG - chr2.2:52880395-52880414 MS.gene071893:CDS 50.0%
TTCAGGTCTAGCCATGGGAA+TGG - chr2.2:52879636-52879655 MS.gene071893:CDS 50.0%
TTCCCATGGCTAGACCTGAA+AGG + chr2.2:52879636-52879655 None:intergenic 50.0%
TTTATCCCTGCCCCAATACC+TGG + chr2.2:52880639-52880658 None:intergenic 50.0%
! AGTCCTTTCAGGTCTAGCCA+TGG - chr2.2:52879630-52879649 MS.gene071893:CDS 50.0%
! CTTTTTGCTGCCTCTCTCTC+TGG - chr2.2:52879160-52879179 MS.gene071893:CDS 50.0%
! GAATGCTTAGAGGGAGTGCA+AGG - chr2.2:52880613-52880632 MS.gene071893:intron 50.0%
! GTCCTTTCAGGTCTAGCCAT+GGG - chr2.2:52879631-52879650 MS.gene071893:CDS 50.0%
!!! GGGTTGGTGGGGTTTTGTTA+TGG - chr2.2:52880723-52880742 MS.gene071893:intron 50.0%
ACCGACGGCACTTAGTGCTT+CGG - chr2.2:52880347-52880366 MS.gene071893:CDS 55.0%
AGATGCGGATCGGATGAAGG+AGG + chr2.2:52879879-52879898 None:intergenic 55.0%
CCGTGGCTAAAGCTACACGA+GGG + chr2.2:52880287-52880306 None:intergenic 55.0%
GACATACCCGACAACTGCTG+AGG - chr2.2:52879033-52879052 MS.gene071893:CDS 55.0%
GCAAGTGGTGCTTTGGCCAT+AGG - chr2.2:52879583-52879602 MS.gene071893:CDS 55.0%
GGAGTGCAAGGCCAGGTATT+GGG - chr2.2:52880625-52880644 MS.gene071893:intron 55.0%
GGGAGGACTAGGGATAGGTA+TGG + chr2.2:52880109-52880128 None:intergenic 55.0%
GTAGGGAATGCACTTGGAGC+TGG - chr2.2:52880381-52880400 MS.gene071893:CDS 55.0%
TGCTCCCTCCGACTAAAGGT+CGG + chr2.2:52879231-52879250 None:intergenic 55.0%
! ACCGAAGCACTAAGTGCCGT+CGG + chr2.2:52880351-52880370 None:intergenic 55.0%
! GAGTGCAAGGCCAGGTATTG+GGG - chr2.2:52880626-52880645 MS.gene071893:intron 55.0%
!! CCCTCGTGTAGCTTTAGCCA+CGG - chr2.2:52880284-52880303 MS.gene071893:CDS 55.0%
!! TCGTGTAGCTTTAGCCACGG+CGG - chr2.2:52880287-52880306 MS.gene071893:CDS 55.0%
GCCGTGGCTAAAGCTACACG+AGG + chr2.2:52880288-52880307 None:intergenic 60.0%
! CTTAGAGGGAGTGCAAGGCC+AGG - chr2.2:52880618-52880637 MS.gene071893:intron 60.0%
! GGGAGTGCAAGGCCAGGTAT+TGG - chr2.2:52880624-52880643 MS.gene071893:intron 60.0%
!! CAAGGCCAGGTATTGGGGCA+GGG - chr2.2:52880631-52880650 MS.gene071893:intron 60.0%
!! CGTGTAGCTTTAGCCACGGC+GGG - chr2.2:52880288-52880307 MS.gene071893:CDS 60.0%
!! TACTTGGTGGGGGCGCCAAT+AGG - chr2.2:52880672-52880691 MS.gene071893:intron 60.0%
!! GCAAGGCCAGGTATTGGGGC+AGG - chr2.2:52880630-52880649 MS.gene071893:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 52879007 52880935 52879007 ID=MS.gene071893
chr2.2 mRNA 52879007 52880935 52879007 ID=MS.gene071893.t1;Parent=MS.gene071893
chr2.2 exon 52880888 52880935 52880888 ID=MS.gene071893.t1.exon1;Parent=MS.gene071893.t1
chr2.2 CDS 52880888 52880935 52880888 ID=cds.MS.gene071893.t1;Parent=MS.gene071893.t1
chr2.2 exon 52879007 52880482 52879007 ID=MS.gene071893.t1.exon2;Parent=MS.gene071893.t1
chr2.2 CDS 52879007 52880482 52879007 ID=cds.MS.gene071893.t1;Parent=MS.gene071893.t1
Gene Sequence

>MS.gene071893

ATGGTTGCTCAAGAGAAATCCCAAAAGACATACCCGACAACTGCTGAGGTACGATATATACCATACAAAATCTCCCATGGTTTTCACATTTTTCATACATATCACTTCTTCATCCCTCATACTATATACTCATAGTATATACTTACATGGATCCTTTTTGCTGCCTCTCTCTCTGGTCAAATGTCATCAATTGCTGACATTTGATCAGAGAGCTGGTATAGCCGACCTTTAGTCGGAGGGAGCATAACATATTAAAATTCCATAGTTTTCATATACCATTTCTTCATCAATATCATAGCATAGCATTAGTCCAAAAAAAAATATATATCATAGCATAGCATAGCATAGCTTAGCATATATATTAACATGGATCCTTTATGCAGCCTCACTCTTTTAAACTATGTCTTATATATACTTGTAAAAGTTCATATTGTTTTTGTTTTGTTTTTTCAGGTGGTGGACGAGCTAAAGAGAATGATGGACATAGGTTTCCCAATAGCAGCCATGAGCATAGTAGGATACCTTAAAAACATGATCTTAGTTGTTTGCATGGGAAAGTTAGGAAGCCTTGAGTTAGCAAGTGGTGCTTTGGCCATAGGCTTCACCAATGTAACCGGTTACTCAGTCCTTTCAGGTCTAGCCATGGGAATGGAACCTCTATGTACTCAAGCCATTGGTTCACAAAACTTCTCTTTAGTCTCTCTCATATTAAGAAGAACAATTCTCATGTTATTAGTAGCTTCATTACCCATTTCACTCTTATGGCTCAATCTTGAACCATTCATGTTATCCCTTCATCAAAATCAAGACATAACAAGAATAGCAAGCCTCTATTGTCGCCTATCGATTCCCGATCTTATAGCGAATAGCCTCCTTCATCCGATCCGCATCTATTTACGTAGCAAAGGAACAACTTGGCCATTATTGTGGTGTACTTCACTTTCCGTTATCATTCATATCCCTATCATCATTTTCTTAACCTTCAAACTTCACCTTGGTGTACAAGGTATTGCTATTTCAGCTTTTGTTGCCAATTTCAATACCCTTTTCTTCCTTTTATCATACATGTTCTACATGCATGTCTCACATGTTTCAATCTCCATACCTATCCCTAGTCCTCCCTTGTTATCATCACAACAAGAGAAACCAACAAGTGTCAAAACCCTAGGCAAAGAATGGGGCATGTTAATAAGGTTTTCCATTCAAAGTTGTCTTGGAGTTTGCTTAGAATGGTGGTGGTATGAGTTCATGACAATTCTAGCTGGTTACCTTTACAACCCTCGTGTAGCTTTAGCCACGGCGGGAATAGTAATACAAACAACATCACTTATGTACACTTTACCGACGGCACTTAGTGCTTCGGTTTCAACAAGGGTAGGGAATGCACTTGGAGCTGGTCAACCATCAAAGGCAAATTTGTCAACTATGGTAGCAATTGGAATGTCACTAGCAAGTTCAACATTAGGGTTATTATGGACAACATTAGGAAGAGAAAAATGGGGGAAGGTGTTCACAAATGATAAAGAGGTGTTAGAGTTGACAATGGCGGTTTTACCTATAATTGGTGTTTGTGAGTTAGCAAATTGTCCACAAACAACTAGTTGTGGAATGCTTAGAGGGAGTGCAAGGCCAGGTATTGGGGCAGGGATAAATTTTTACTCATTTTACTTGGTGGGGGCGCCAATAGGAATAGTGTTGGGGTTTGTTTTGAAATTAGGGTTGGTGGGGTTTTGTTATGGTTTGTTGGCAGCACAAATAGCATGTGTGGTATCAATTCTTGTTGTGGTATATAACACTGATTGGGAAAGAGAGTCATTGAAGGCAAAAAGCTTGGTGGGTAATGATACATGTGACACATTATTTGCTCATGTTGAAGACCAAATAATCAAATGTGAGCAAGATATTGTCTTTCTCAATGAGAACAAGTGA
Protein sequence

>MS.gene071893.t1

MVAQEKSQKTYPTTAEVVDELKRMMDIGFPIAAMSIVGYLKNMILVVCMGKLGSLELASGALAIGFTNVTGYSVLSGLAMGMEPLCTQAIGSQNFSLVSLILRRTILMLLVASLPISLLWLNLEPFMLSLHQNQDITRIASLYCRLSIPDLIANSLLHPIRIYLRSKGTTWPLLWCTSLSVIIHIPIIIFLTFKLHLGVQGIAISAFVANFNTLFFLLSYMFYMHVSHVSISIPIPSPPLLSSQQEKPTSVKTLGKEWGMLIRFSIQSCLGVCLEWWWYEFMTILAGYLYNPRVALATAGIVIQTTSLMYTLPTALSASVSTRVGNALGAGQPSKANLSTMVAIGMSLASSTLGLLWTTLGREKWGKVFTNDKEVLELTMAVLPIIGVCELANCPQTTSCGMLRGSARPGIGAGINFYSFYLVGAPIGIVLGFVLKLGLVGFCYGLLAAQIACVVSILVVVYNTDWERESLKAKSLVGNDTCDTLFAHVEDQIIKCEQDIVFLNENK