Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072120.t1 | XP_013444296.1 | 96.2 | 448 | 16 | 1 | 1 | 447 | 1 | 448 | 7.70E-254 | 885.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072120.t1 | Q8VYU3 | 61.0 | 462 | 163 | 8 | 1 | 454 | 1 | 453 | 1.4e-155 | 550.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072120.t1 | A0A072TNB0 | 96.2 | 448 | 16 | 1 | 1 | 447 | 1 | 448 | 5.6e-254 | 885.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055251 | MS.gene072120 | 0.829557 | 4.82E-55 | -1.69E-46 |
| MS.gene060076 | MS.gene072120 | 0.822627 | 2.14E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072120.t1 | MTR_8g016030 | 96.205 | 448 | 16 | 1 | 1 | 447 | 1 | 448 | 0.0 | 895 |
| MS.gene072120.t1 | MTR_8g012570 | 70.236 | 467 | 127 | 5 | 1 | 457 | 1 | 465 | 0.0 | 646 |
| MS.gene072120.t1 | MTR_7g055700 | 68.251 | 463 | 128 | 6 | 1 | 454 | 1 | 453 | 0.0 | 631 |
| MS.gene072120.t1 | MTR_7g055700 | 68.986 | 345 | 96 | 4 | 119 | 454 | 1 | 343 | 3.03e-172 | 487 |
| MS.gene072120.t1 | MTR_7g060730 | 72.289 | 83 | 22 | 1 | 70 | 152 | 27 | 108 | 2.20e-38 | 135 |
| MS.gene072120.t1 | MTR_7g060740 | 49.153 | 118 | 40 | 4 | 193 | 310 | 14 | 111 | 2.76e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072120.t1 | AT3G07270 | 58.030 | 467 | 181 | 8 | 1 | 458 | 1 | 461 | 0.0 | 520 |
| MS.gene072120.t1 | AT3G07270 | 59.775 | 445 | 166 | 7 | 21 | 458 | 23 | 461 | 0.0 | 519 |
Find 91 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTACTGATTGCTTTAATTT+TGG | 0.144486 | 8.1:-81501690 | None:intergenic |
| TATATGAACAACACCATAAA+AGG | 0.177080 | 8.1:-81501960 | None:intergenic |
| TCTGCTTTGTGAGCCTTTCT+TGG | 0.182440 | 8.1:-81502069 | None:intergenic |
| AATGACAAAGTTCGTCTTAA+AGG | 0.202003 | 8.1:+81501620 | MS.gene072120:CDS |
| TCTTCAATTGTTAAATCTTT+AGG | 0.230854 | 8.1:+81501734 | MS.gene072120:CDS |
| GGCCTAAATAATAATAAAAT+TGG | 0.265269 | 8.1:+81501182 | MS.gene072120:CDS |
| CAAAGATCTGTTACTAGGTT+TGG | 0.272301 | 8.1:+81499346 | MS.gene072120:CDS |
| ATGAACTATTGATTGTAAAA+TGG | 0.296775 | 8.1:-81502023 | None:intergenic |
| AAAGATCTGTTACTAGGTTT+GGG | 0.298638 | 8.1:+81499347 | MS.gene072120:CDS |
| GTTAAGTTACTTGTTTCTTC+AGG | 0.301438 | 8.1:+81501521 | MS.gene072120:CDS |
| TTTAGTCTTCTTAAGTTTAG+AGG | 0.309476 | 8.1:+81501590 | MS.gene072120:CDS |
| AGCAATCAGTACTTCTATTA+TGG | 0.318044 | 8.1:+81501700 | MS.gene072120:CDS |
| TTATTATTTAGGCCATCTTC+AGG | 0.323009 | 8.1:-81501173 | None:intergenic |
| TCTACAAGCTCTTTCCTTGT+TGG | 0.323847 | 8.1:-81501764 | None:intergenic |
| ACCGCAACCATTGCCGTATT+AGG | 0.326394 | 8.1:+81502196 | MS.gene072120:CDS |
| TGCTTAAGCCTACCACTCTT+TGG | 0.341064 | 8.1:-81501322 | None:intergenic |
| CATGTTGGTTATATCCCTTC+AGG | 0.349179 | 8.1:+81501299 | MS.gene072120:CDS |
| GATATCGACTCAAACGATAT+AGG | 0.353026 | 8.1:+81501494 | MS.gene072120:CDS |
| TTACTTGTTTCTTCAGGATC+TGG | 0.355301 | 8.1:+81501527 | MS.gene072120:CDS |
| TGTAAAATGGACTTTCCAAT+TGG | 0.369408 | 8.1:-81502010 | None:intergenic |
| ACATGACACTTGACTTGAAA+TGG | 0.378614 | 8.1:-81501281 | None:intergenic |
| AGTATGATAGCAACTCCTTC+TGG | 0.380673 | 8.1:-81501440 | None:intergenic |
| TGCTCACATTGTGACCAAAA+AGG | 0.383650 | 8.1:-81501926 | None:intergenic |
| ATAGGATACTTTCTTTCTAA+AGG | 0.384378 | 8.1:+81501980 | MS.gene072120:CDS |
| TCGATATCTTTGTATGGAAA+AGG | 0.388798 | 8.1:-81501479 | None:intergenic |
| CCAAGTGCTACATCTCTTGA+AGG | 0.424595 | 8.1:+81502268 | MS.gene072120:CDS |
| ATATCGACTCAAACGATATA+GGG | 0.424779 | 8.1:+81501495 | MS.gene072120:CDS |
| TTTGAGTCGATATCTTTGTA+TGG | 0.426394 | 8.1:-81501485 | None:intergenic |
| TCTAAAGGATGCTATCCAAT+TGG | 0.437570 | 8.1:+81501995 | MS.gene072120:CDS |
| AATAAAATTGGTCATGGTGG+TGG | 0.440425 | 8.1:+81501194 | MS.gene072120:CDS |
| TTTCAGTTAATGGGGTCGTT+TGG | 0.445001 | 8.1:+81499227 | None:intergenic |
| AAGGCCTTTGCAACACGAAA+TGG | 0.450325 | 8.1:-81499404 | None:intergenic |
| TCCTAATACGGCAATGGTTG+CGG | 0.451246 | 8.1:-81502197 | None:intergenic |
| TCAAACTTCAAGTCCAAGAA+AGG | 0.460674 | 8.1:+81502056 | MS.gene072120:CDS |
| ACCTCTGGTTCCTTCAGAAA+AGG | 0.470637 | 8.1:-81499423 | None:intergenic |
| AGTTGAAAAGTGTCCTAATA+CGG | 0.473329 | 8.1:-81502209 | None:intergenic |
| GTCACACTTGTATGATCTCT+AGG | 0.476571 | 8.1:+81502149 | MS.gene072120:CDS |
| ATCTTTGACTGCACACTCAA+TGG | 0.481435 | 8.1:-81499330 | None:intergenic |
| TCCACCTACCAATGGTGAAA+GGG | 0.484027 | 8.1:-81502101 | None:intergenic |
| ATTGGTCATGGTGGTGGAGT+AGG | 0.493372 | 8.1:+81501200 | MS.gene072120:CDS |
| TGCAGAAACCCTTTCACCAT+TGG | 0.500531 | 8.1:+81502093 | MS.gene072120:CDS |
| TGTGTTCAGCTTTGCATCAA+GGG | 0.508751 | 8.1:+81501411 | MS.gene072120:CDS |
| CGATATCTTTGTATGGAAAA+GGG | 0.509754 | 8.1:-81501478 | None:intergenic |
| TTCCACCTACCAATGGTGAA+AGG | 0.509895 | 8.1:-81502102 | None:intergenic |
| ATGTGTTCAGCTTTGCATCA+AGG | 0.516850 | 8.1:+81501410 | MS.gene072120:CDS |
| CTAATACCAATGGAGAGGTA+AGG | 0.520921 | 8.1:+81501867 | MS.gene072120:CDS |
| CTACCACTCTTTGGCCTGAA+GGG | 0.523240 | 8.1:-81501313 | None:intergenic |
| CCTACCACTCTTTGGCCTGA+AGG | 0.523497 | 8.1:-81501314 | None:intergenic |
| CCTTCAAGAGATGTAGCACT+TGG | 0.525506 | 8.1:-81502268 | None:intergenic |
| AACATTGATATAGAGATGAA+TGG | 0.535613 | 8.1:+81501836 | MS.gene072120:CDS |
| TATTATTTAGGCCATCTTCA+GGG | 0.537173 | 8.1:-81501172 | None:intergenic |
| ATCAAACCTTACCTCTCCAT+TGG | 0.540240 | 8.1:-81501873 | None:intergenic |
| TCACACTTGTATGATCTCTA+GGG | 0.541059 | 8.1:+81502150 | MS.gene072120:CDS |
| GACACCATTTCGTGTTGCAA+AGG | 0.541589 | 8.1:+81499400 | MS.gene072120:CDS |
| AATAATAATAAAATTGGTCA+TGG | 0.542699 | 8.1:+81501188 | MS.gene072120:CDS |
| ATATGAACAACACCATAAAA+GGG | 0.543872 | 8.1:-81501959 | None:intergenic |
| AATAATAAAATTGGTCATGG+TGG | 0.544701 | 8.1:+81501191 | MS.gene072120:CDS |
| GGTTACATTTCTAATACCAA+TGG | 0.551456 | 8.1:+81501857 | MS.gene072120:CDS |
| GCAGTCAAAGATCTGTTACT+AGG | 0.561012 | 8.1:+81499341 | MS.gene072120:CDS |
| GGTGCATTATTCCCTGAAGA+TGG | 0.565188 | 8.1:+81501161 | MS.gene072120:CDS |
| CTTAAGCAAGCTTCCTCGTG+TGG | 0.570483 | 8.1:+81501337 | MS.gene072120:CDS |
| CCTTCAGGCCAAAGAGTGGT+AGG | 0.576895 | 8.1:+81501314 | MS.gene072120:CDS |
| TTTCAAGTCAAGTGTCATGT+TGG | 0.580286 | 8.1:+81501284 | MS.gene072120:CDS |
| AGAGGTAAGGTTTGATGACA+AGG | 0.581040 | 8.1:+81501880 | MS.gene072120:CDS |
| GGGGAAGATATTAATAGGGA+AGG | 0.581098 | 8.1:+81499368 | MS.gene072120:CDS |
| AAGATCTGTTACTAGGTTTG+GGG | 0.583510 | 8.1:+81499348 | MS.gene072120:CDS |
| ACCCTTTCACCATTGGTAGG+TGG | 0.594194 | 8.1:+81502100 | MS.gene072120:CDS |
| GGTCATGGTGGTGGAGTAGG+TGG | 0.598165 | 8.1:+81501203 | MS.gene072120:CDS |
| GAAACCCTTTCACCATTGGT+AGG | 0.598373 | 8.1:+81502097 | MS.gene072120:CDS |
| AAGGACCACTAGATCAATGT+TGG | 0.603976 | 8.1:+81501639 | MS.gene072120:CDS |
| AATGTGAAGGACATTGTTGA+AGG | 0.604917 | 8.1:+81501140 | MS.gene072120:CDS |
| GGACACCAACATTGATCTAG+TGG | 0.609250 | 8.1:-81501644 | None:intergenic |
| GAAACTTCAGCATATAGAGA+AGG | 0.616046 | 8.1:-81501665 | None:intergenic |
| AAGACTCACAATAAGAGTAG+AGG | 0.617418 | 8.1:-81501250 | None:intergenic |
| TCGACTCAAACGATATAGGG+TGG | 0.618583 | 8.1:+81501498 | MS.gene072120:CDS |
| CGACTCAAACGATATAGGGT+GGG | 0.620043 | 8.1:+81501499 | MS.gene072120:CDS |
| TTTCAACTAATCTTGCTGCA+AGG | 0.621567 | 8.1:+81502224 | MS.gene072120:CDS |
| AAAGTGTCCTAATACGGCAA+TGG | 0.624670 | 8.1:-81502203 | None:intergenic |
| CAAGTGCTACATCTCTTGAA+GGG | 0.625994 | 8.1:+81502269 | MS.gene072120:CDS |
| TCAAATGCATTCAAATTGTG+AGG | 0.628000 | 8.1:+81499250 | MS.gene072120:CDS |
| AAGCAAGCTTCCTCGTGTGG+CGG | 0.628840 | 8.1:+81501340 | MS.gene072120:CDS |
| AGATCTGTTACTAGGTTTGG+GGG | 0.630337 | 8.1:+81499349 | MS.gene072120:CDS |
| CTTTAGGAGAAGATCCAACA+AGG | 0.631850 | 8.1:+81501750 | MS.gene072120:CDS |
| CACACTTGTATGATCTCTAG+GGG | 0.636802 | 8.1:+81502151 | MS.gene072120:CDS |
| AGGTTATAGGCAAAATGTGA+AGG | 0.638395 | 8.1:+81501127 | MS.gene072120:intron |
| ATCACATTTCCACCTACCAA+TGG | 0.639419 | 8.1:-81502109 | None:intergenic |
| GCAAATGCTTCCGCCACACG+AGG | 0.643408 | 8.1:-81501350 | None:intergenic |
| CATTTCTAATACCAATGGAG+AGG | 0.648093 | 8.1:+81501862 | MS.gene072120:CDS |
| TATCCCTTCAGGCCAAAGAG+TGG | 0.666606 | 8.1:+81501310 | MS.gene072120:CDS |
| CATCAAGGGATACAACCAGA+AGG | 0.683587 | 8.1:+81501425 | MS.gene072120:CDS |
| ATCTCATCTGCTAAACGCTG+AGG | 0.692989 | 8.1:-81501389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATCAATTTCTTTA+TGG | - | chr8.1:81499889-81499908 | None:intergenic | 10.0% |
| !! | AAATTAATCAATTTCTTTAT+GGG | - | chr8.1:81499888-81499907 | None:intergenic | 10.0% |
| !!! | AAAATAAAAACTTTTTTCTT+TGG | + | chr8.1:81500370-81500389 | MS.gene072120:intron | 10.0% |
| !! | AATAATAATAAAATTGGTCA+TGG | + | chr8.1:81501188-81501207 | MS.gene072120:CDS | 15.0% |
| !! | AATTAATCAATTTCTTTATG+GGG | - | chr8.1:81499887-81499906 | None:intergenic | 15.0% |
| !! | ATTTGGTTAAATAACATTTA+AGG | + | chr8.1:81500405-81500424 | MS.gene072120:intron | 15.0% |
| !! | TAATTTCTTCAAAACATTTA+AGG | + | chr8.1:81500431-81500450 | MS.gene072120:intron | 15.0% |
| !! | TGATATAACAAACAAAATTT+AGG | + | chr8.1:81499840-81499859 | MS.gene072120:intron | 15.0% |
| !! | TTTAAAAAAATCTTTCTTGA+AGG | + | chr8.1:81500242-81500261 | MS.gene072120:intron | 15.0% |
| !! | TTTAATTAGATTTGTACTTA+AGG | + | chr8.1:81501085-81501104 | MS.gene072120:intron | 15.0% |
| !!! | AACAAAATTTAGGATATTAT+TGG | + | chr8.1:81499850-81499869 | MS.gene072120:intron | 15.0% |
| !!! | GACCAATTTTATTATTATTT+AGG | - | chr8.1:81501187-81501206 | None:intergenic | 15.0% |
| !!! | GTACAAACATTTTTTTAAAA+AGG | + | chr8.1:81500680-81500699 | MS.gene072120:intron | 15.0% |
| !!! | TAAATGTTATTTAACCAAAT+AGG | - | chr8.1:81500405-81500424 | None:intergenic | 15.0% |
| !! | AAAAAAACATAGTTTCTTTG+TGG | - | chr8.1:81501066-81501085 | None:intergenic | 20.0% |
| !! | AACATCACATTATATATGTA+AGG | + | chr8.1:81499985-81500004 | MS.gene072120:intron | 20.0% |
| !! | ACATCACATTATATATGTAA+GGG | + | chr8.1:81499986-81500005 | MS.gene072120:intron | 20.0% |
| !! | ATGGACAAAAAAATATTGTA+GGG | + | chr8.1:81500821-81500840 | MS.gene072120:intron | 20.0% |
| !! | GGCCTAAATAATAATAAAAT+TGG | + | chr8.1:81501182-81501201 | MS.gene072120:CDS | 20.0% |
| !! | TAATAGTTAGAAAAACATTG+TGG | + | chr8.1:81500079-81500098 | MS.gene072120:intron | 20.0% |
| !! | TATGGACAAAAAAATATTGT+AGG | + | chr8.1:81500820-81500839 | MS.gene072120:intron | 20.0% |
| !! | TCTTCAATTGTTAAATCTTT+AGG | + | chr8.1:81501734-81501753 | MS.gene072120:CDS | 20.0% |
| !!! | AAATAGCATTTTTGTTCAAA+AGG | + | chr8.1:81501029-81501048 | MS.gene072120:intron | 20.0% |
| !!! | ATGAACTATTGATTGTAAAA+TGG | - | chr8.1:81502026-81502045 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTAACTATTACT+TGG | - | chr8.1:81500077-81500096 | None:intergenic | 20.0% |
| !!! | CAAAAAAAAAAAGTACACTA+AGG | - | chr8.1:81499627-81499646 | None:intergenic | 20.0% |
| !!! | CAATCAATAGTTCATTTTTA+TGG | + | chr8.1:81502031-81502050 | MS.gene072120:CDS | 20.0% |
| !!! | GTGATTTTTCTAAAAAATGA+CGG | - | chr8.1:81500205-81500224 | None:intergenic | 20.0% |
| !!! | TATTTTTTAGAAATATGAGG+TGG | - | chr8.1:81500970-81500989 | None:intergenic | 20.0% |
| !!! | TGGTATTTTTTAGAAATATG+AGG | - | chr8.1:81500973-81500992 | None:intergenic | 20.0% |
| !!! | TTGTAACACATTTTAAGATA+TGG | + | chr8.1:81500848-81500867 | MS.gene072120:intron | 20.0% |
| ! | AACATTGATATAGAGATGAA+TGG | + | chr8.1:81501836-81501855 | MS.gene072120:CDS | 25.0% |
| ! | AACCATTTCAAAAATCTAGT+AGG | - | chr8.1:81501794-81501813 | None:intergenic | 25.0% |
| ! | AATAATAAAATTGGTCATGG+TGG | + | chr8.1:81501191-81501210 | MS.gene072120:CDS | 25.0% |
| ! | AGAACAAAAATGCTGAAATA+TGG | + | chr8.1:81501558-81501577 | MS.gene072120:CDS | 25.0% |
| ! | AGATACGATAAAGTCAATAA+AGG | + | chr8.1:81500601-81500620 | MS.gene072120:intron | 25.0% |
| ! | ATAGGATACTTTCTTTCTAA+AGG | + | chr8.1:81501980-81501999 | MS.gene072120:CDS | 25.0% |
| ! | ATATGAACAACACCATAAAA+GGG | - | chr8.1:81501962-81501981 | None:intergenic | 25.0% |
| ! | CATAATATGCATAACAACAT+GGG | + | chr8.1:81500514-81500533 | MS.gene072120:intron | 25.0% |
| ! | GCATTCTTCATAAATAAAAG+TGG | - | chr8.1:81499464-81499483 | None:intergenic | 25.0% |
| ! | GTTACTATGTAATATTAGTG+AGG | + | chr8.1:81499697-81499716 | MS.gene072120:intron | 25.0% |
| ! | TAAAACTCGACAATTATCTT+AGG | + | chr8.1:81500910-81500929 | MS.gene072120:intron | 25.0% |
| ! | TATATGAACAACACCATAAA+AGG | - | chr8.1:81501963-81501982 | None:intergenic | 25.0% |
| ! | TGTACCTGAATCATATATTA+TGG | + | chr8.1:81500802-81500821 | MS.gene072120:intron | 25.0% |
| ! | TGTCCTAATGATATTGTTTA+CGG | + | chr8.1:81499491-81499510 | MS.gene072120:intron | 25.0% |
| ! | TTGTCCATAATATATGATTC+AGG | - | chr8.1:81500809-81500828 | None:intergenic | 25.0% |
| ! | TTTAAAAAGGTCCTATACAA+AGG | + | chr8.1:81500693-81500712 | MS.gene072120:intron | 25.0% |
| !! | AGTTCATACAAACTATTTTC+TGG | + | chr8.1:81500136-81500155 | MS.gene072120:intron | 25.0% |
| !! | ATTTCTAAAAAATACCACAG+CGG | + | chr8.1:81500976-81500995 | MS.gene072120:intron | 25.0% |
| !! | GATATTAAACTTTTATCTGC+AGG | + | chr8.1:81501107-81501126 | MS.gene072120:intron | 25.0% |
| !! | TTTAGTCTTCTTAAGTTTAG+AGG | + | chr8.1:81501590-81501609 | MS.gene072120:CDS | 25.0% |
| !!! | AGTACTGATTGCTTTAATTT+TGG | - | chr8.1:81501693-81501712 | None:intergenic | 25.0% |
| !!! | ATACAAACTATTTTCTGGTT+GGG | + | chr8.1:81500141-81500160 | MS.gene072120:intron | 25.0% |
| !!! | TTTGGAAACTTTTTCCTATT+TGG | + | chr8.1:81500388-81500407 | MS.gene072120:intron | 25.0% |
| !!! | TTTTATGGTGTTGTTCATAT+AGG | + | chr8.1:81501962-81501981 | MS.gene072120:CDS | 25.0% |
| AAAACATAAGACATGAACGA+AGG | - | chr8.1:81499782-81499801 | None:intergenic | 30.0% | |
| AAAGATCTGTTACTAGGTTT+GGG | + | chr8.1:81499347-81499366 | MS.gene072120:CDS | 30.0% | |
| AATGACAAAGTTCGTCTTAA+AGG | + | chr8.1:81501620-81501639 | MS.gene072120:CDS | 30.0% | |
| ACATTATATATGTAAGGGTC+GGG | + | chr8.1:81499991-81500010 | MS.gene072120:intron | 30.0% | |
| AGCAATCAGTACTTCTATTA+TGG | + | chr8.1:81501700-81501719 | MS.gene072120:CDS | 30.0% | |
| CACATTATATATGTAAGGGT+CGG | + | chr8.1:81499990-81500009 | MS.gene072120:intron | 30.0% | |
| CCATAATATGCATAACAACA+TGG | + | chr8.1:81500513-81500532 | MS.gene072120:intron | 30.0% | |
| CCATGTTGTTATGCATATTA+TGG | - | chr8.1:81500516-81500535 | None:intergenic | 30.0% | |
| CGACAATTATCTTAGGTTAT+GGG | + | chr8.1:81500917-81500936 | MS.gene072120:intron | 30.0% | |
| CGATATCTTTGTATGGAAAA+GGG | - | chr8.1:81501481-81501500 | None:intergenic | 30.0% | |
| GACAATTATCTTAGGTTATG+GGG | + | chr8.1:81500918-81500937 | MS.gene072120:intron | 30.0% | |
| GAGGTTTGAATAATAAGAAG+CGG | + | chr8.1:81499716-81499735 | MS.gene072120:intron | 30.0% | |
| GATCCGTAAACAATATCATT+AGG | - | chr8.1:81499497-81499516 | None:intergenic | 30.0% | |
| GGTTACATTTCTAATACCAA+TGG | + | chr8.1:81501857-81501876 | MS.gene072120:CDS | 30.0% | |
| GTTTATGAACTTCACCTTTA+AGG | - | chr8.1:81500047-81500066 | None:intergenic | 30.0% | |
| TATTATTTAGGCCATCTTCA+GGG | - | chr8.1:81501175-81501194 | None:intergenic | 30.0% | |
| TCAAATGCATTCAAATTGTG+AGG | + | chr8.1:81499250-81499269 | MS.gene072120:CDS | 30.0% | |
| TCGACAATTATCTTAGGTTA+TGG | + | chr8.1:81500916-81500935 | MS.gene072120:intron | 30.0% | |
| TCGATATCTTTGTATGGAAA+AGG | - | chr8.1:81501482-81501501 | None:intergenic | 30.0% | |
| TCTAGGGGAATTGAAAAATT+TGG | + | chr8.1:81502166-81502185 | MS.gene072120:CDS | 30.0% | |
| TGTAATTGAGAATTTAGACG+TGG | + | chr8.1:81500645-81500664 | MS.gene072120:intron | 30.0% | |
| TTATTATTTAGGCCATCTTC+AGG | - | chr8.1:81501176-81501195 | None:intergenic | 30.0% | |
| TTGACTTTATCGTATCTTCA+TGG | - | chr8.1:81500598-81500617 | None:intergenic | 30.0% | |
| TTTATCGTATCTTCATGGTT+TGG | - | chr8.1:81500593-81500612 | None:intergenic | 30.0% | |
| TTTGAGTCGATATCTTTGTA+TGG | - | chr8.1:81501488-81501507 | None:intergenic | 30.0% | |
| TTTGGGGGAAGATATTAATA+GGG | + | chr8.1:81499364-81499383 | MS.gene072120:CDS | 30.0% | |
| ! | AACTTTTATCTGCAGGTTAT+AGG | + | chr8.1:81501114-81501133 | MS.gene072120:intron | 30.0% |
| ! | GTTAAGTTACTTGTTTCTTC+AGG | + | chr8.1:81501521-81501540 | MS.gene072120:CDS | 30.0% |
| ! | TGTAAAATGGACTTTCCAAT+TGG | - | chr8.1:81502013-81502032 | None:intergenic | 30.0% |
| ! | TGTGTTCGACTTATATTTTC+AGG | + | chr8.1:81499566-81499585 | MS.gene072120:intron | 30.0% |
| ! | TTCGTTCATGTCTTATGTTT+TGG | + | chr8.1:81499781-81499800 | MS.gene072120:intron | 30.0% |
| !! | AGTTGAAAAGTGTCCTAATA+CGG | - | chr8.1:81502212-81502231 | None:intergenic | 30.0% |
| !! | ATATCGACTCAAACGATATA+GGG | + | chr8.1:81501495-81501514 | MS.gene072120:CDS | 30.0% |
| !! | CATACAAACTATTTTCTGGT+TGG | + | chr8.1:81500140-81500159 | MS.gene072120:intron | 30.0% |
| !! | CTCCTACTAGATTTTTGAAA+TGG | + | chr8.1:81501789-81501808 | MS.gene072120:CDS | 30.0% |
| !! | TCACCTTTAAGGTTAATAAG+TGG | - | chr8.1:81500036-81500055 | None:intergenic | 30.0% |
| !!! | TACAAACTATTTTCTGGTTG+GGG | + | chr8.1:81500142-81500161 | MS.gene072120:intron | 30.0% |
| !!! | TTAGACGTGGTTTTATAGAA+AGG | + | chr8.1:81500658-81500677 | MS.gene072120:intron | 30.0% |
| AAGACTCACAATAAGAGTAG+AGG | - | chr8.1:81501253-81501272 | None:intergenic | 35.0% | |
| AAGATCTGTTACTAGGTTTG+GGG | + | chr8.1:81499348-81499367 | MS.gene072120:CDS | 35.0% | |
| AATAAAATTGGTCATGGTGG+TGG | + | chr8.1:81501194-81501213 | MS.gene072120:CDS | 35.0% | |
| AATGTGAAGGACATTGTTGA+AGG | + | chr8.1:81501140-81501159 | MS.gene072120:CDS | 35.0% | |
| ACTAGATGTTGCCTTTGTAT+AGG | - | chr8.1:81500707-81500726 | None:intergenic | 35.0% | |
| AGGTTATAGGCAAAATGTGA+AGG | + | chr8.1:81501127-81501146 | MS.gene072120:intron | 35.0% | |
| ATCAACTGAATTATGCTCAC+AGG | - | chr8.1:81499962-81499981 | None:intergenic | 35.0% | |
| ATTTCTTTATGGGGATCTAG+TGG | - | chr8.1:81499878-81499897 | None:intergenic | 35.0% | |
| CAAAGATCTGTTACTAGGTT+TGG | + | chr8.1:81499346-81499365 | MS.gene072120:CDS | 35.0% | |
| CATTATATATGTAAGGGTCG+GGG | + | chr8.1:81499992-81500011 | MS.gene072120:intron | 35.0% | |
| CATTTCTAATACCAATGGAG+AGG | + | chr8.1:81501862-81501881 | MS.gene072120:CDS | 35.0% | |
| CCTCCACTTATTAACCTTAA+AGG | + | chr8.1:81500030-81500049 | MS.gene072120:intron | 35.0% | |
| GAAACTTCAGCATATAGAGA+AGG | - | chr8.1:81501668-81501687 | None:intergenic | 35.0% | |
| GTTTGGGGGAAGATATTAAT+AGG | + | chr8.1:81499363-81499382 | MS.gene072120:CDS | 35.0% | |
| TCAAACTTCAAGTCCAAGAA+AGG | + | chr8.1:81502056-81502075 | MS.gene072120:CDS | 35.0% | |
| TCACACTTGTATGATCTCTA+GGG | + | chr8.1:81502150-81502169 | MS.gene072120:CDS | 35.0% | |
| TCTAAAGGATGCTATCCAAT+TGG | + | chr8.1:81501995-81502014 | MS.gene072120:CDS | 35.0% | |
| TGGAATACTCTCCAAAAACT+TGG | - | chr8.1:81502251-81502270 | None:intergenic | 35.0% | |
| TTTCAACTAATCTTGCTGCA+AGG | + | chr8.1:81502224-81502243 | MS.gene072120:CDS | 35.0% | |
| ! | AAAAGTACACATCGTTTCTG+CGG | + | chr8.1:81501004-81501023 | MS.gene072120:intron | 35.0% |
| ! | ACATGACACTTGACTTGAAA+TGG | - | chr8.1:81501284-81501303 | None:intergenic | 35.0% |
| ! | CATCATTTGCTTCCCTTTTA+TGG | + | chr8.1:81501947-81501966 | MS.gene072120:CDS | 35.0% |
| ! | TTACTTGTTTCTTCAGGATC+TGG | + | chr8.1:81501527-81501546 | MS.gene072120:CDS | 35.0% |
| ! | TTTCAAGTCAAGTGTCATGT+TGG | + | chr8.1:81501284-81501303 | MS.gene072120:CDS | 35.0% |
| !! | CCTTTAAGGTTAATAAGTGG+AGG | - | chr8.1:81500033-81500052 | None:intergenic | 35.0% |
| !! | GATATCGACTCAAACGATAT+AGG | + | chr8.1:81501494-81501513 | MS.gene072120:CDS | 35.0% |
| !! | TAGAATTTGCCTTTCTGGTT+TGG | + | chr8.1:81500537-81500556 | MS.gene072120:intron | 35.0% |
| !!! | ACAAACTATTTTCTGGTTGG+GGG | + | chr8.1:81500143-81500162 | MS.gene072120:intron | 35.0% |
| AAGGACCACTAGATCAATGT+TGG | + | chr8.1:81501639-81501658 | MS.gene072120:CDS | 40.0% | |
| ACATAAGACATGAACGAAGG+TGG | - | chr8.1:81499779-81499798 | None:intergenic | 40.0% | |
| AGATCATAGTTACTCACCTC+TGG | - | chr8.1:81499441-81499460 | None:intergenic | 40.0% | |
| AGATCTGTTACTAGGTTTGG+GGG | + | chr8.1:81499349-81499368 | MS.gene072120:CDS | 40.0% | |
| AGTATGATAGCAACTCCTTC+TGG | - | chr8.1:81501443-81501462 | None:intergenic | 40.0% | |
| ATCAAACCTTACCTCTCCAT+TGG | - | chr8.1:81501876-81501895 | None:intergenic | 40.0% | |
| ATCACATTTCCACCTACCAA+TGG | - | chr8.1:81502112-81502131 | None:intergenic | 40.0% | |
| ATCTTTGACTGCACACTCAA+TGG | - | chr8.1:81499333-81499352 | None:intergenic | 40.0% | |
| ATGGGTAGAATTTGCCTTTC+TGG | + | chr8.1:81500532-81500551 | MS.gene072120:intron | 40.0% | |
| ATGTGTTCAGCTTTGCATCA+AGG | + | chr8.1:81501410-81501429 | MS.gene072120:CDS | 40.0% | |
| CAAGTGCTACATCTCTTGAA+GGG | + | chr8.1:81502269-81502288 | MS.gene072120:CDS | 40.0% | |
| CACACTTGTATGATCTCTAG+GGG | + | chr8.1:81502151-81502170 | MS.gene072120:CDS | 40.0% | |
| CTAATACCAATGGAGAGGTA+AGG | + | chr8.1:81501867-81501886 | MS.gene072120:CDS | 40.0% | |
| GCAGTCAAAGATCTGTTACT+AGG | + | chr8.1:81499341-81499360 | MS.gene072120:CDS | 40.0% | |
| GGGGAAGATATTAATAGGGA+AGG | + | chr8.1:81499368-81499387 | MS.gene072120:CDS | 40.0% | |
| GTCACACTTGTATGATCTCT+AGG | + | chr8.1:81502149-81502168 | MS.gene072120:CDS | 40.0% | |
| TCTACAAGCTCTTTCCTTGT+TGG | - | chr8.1:81501767-81501786 | None:intergenic | 40.0% | |
| TGCTCACATTGTGACCAAAA+AGG | - | chr8.1:81501929-81501948 | None:intergenic | 40.0% | |
| TGTGTTCAGCTTTGCATCAA+GGG | + | chr8.1:81501411-81501430 | MS.gene072120:CDS | 40.0% | |
| ! | AAAGTGTCCTAATACGGCAA+TGG | - | chr8.1:81502206-81502225 | None:intergenic | 40.0% |
| ! | AGAGGTAAGGTTTGATGACA+AGG | + | chr8.1:81501880-81501899 | MS.gene072120:CDS | 40.0% |
| ! | CATGTTGGTTATATCCCTTC+AGG | + | chr8.1:81501299-81501318 | MS.gene072120:CDS | 40.0% |
| ! | CTGAAGTGAACTTGCCTTTT+TGG | + | chr8.1:81501912-81501931 | MS.gene072120:CDS | 40.0% |
| ! | CTTTAGGAGAAGATCCAACA+AGG | + | chr8.1:81501750-81501769 | MS.gene072120:CDS | 40.0% |
| AAGGCCTTTGCAACACGAAA+TGG | - | chr8.1:81499407-81499426 | None:intergenic | 45.0% | |
| ATCTCATCTGCTAAACGCTG+AGG | - | chr8.1:81501392-81501411 | None:intergenic | 45.0% | |
| CATCAAGGGATACAACCAGA+AGG | + | chr8.1:81501425-81501444 | MS.gene072120:CDS | 45.0% | |
| CCAAGTGCTACATCTCTTGA+AGG | + | chr8.1:81502268-81502287 | MS.gene072120:CDS | 45.0% | |
| CCTTCAAGAGATGTAGCACT+TGG | - | chr8.1:81502271-81502290 | None:intergenic | 45.0% | |
| CGACTCAAACGATATAGGGT+GGG | + | chr8.1:81501499-81501518 | MS.gene072120:CDS | 45.0% | |
| GAAACCCTTTCACCATTGGT+AGG | + | chr8.1:81502097-81502116 | MS.gene072120:CDS | 45.0% | |
| GACACCATTTCGTGTTGCAA+AGG | + | chr8.1:81499400-81499419 | MS.gene072120:CDS | 45.0% | |
| GGACACCAACATTGATCTAG+TGG | - | chr8.1:81501647-81501666 | None:intergenic | 45.0% | |
| GGTGCATTATTCCCTGAAGA+TGG | + | chr8.1:81501161-81501180 | MS.gene072120:CDS | 45.0% | |
| TCCACCTACCAATGGTGAAA+GGG | - | chr8.1:81502104-81502123 | None:intergenic | 45.0% | |
| TCCTAATACGGCAATGGTTG+CGG | - | chr8.1:81502200-81502219 | None:intergenic | 45.0% | |
| TCGACTCAAACGATATAGGG+TGG | + | chr8.1:81501498-81501517 | MS.gene072120:CDS | 45.0% | |
| TCTGCTTTGTGAGCCTTTCT+TGG | - | chr8.1:81502072-81502091 | None:intergenic | 45.0% | |
| TGCAGAAACCCTTTCACCAT+TGG | + | chr8.1:81502093-81502112 | MS.gene072120:CDS | 45.0% | |
| TGCTTAAGCCTACCACTCTT+TGG | - | chr8.1:81501325-81501344 | None:intergenic | 45.0% | |
| TTCCACCTACCAATGGTGAA+AGG | - | chr8.1:81502105-81502124 | None:intergenic | 45.0% | |
| TTCCGTTCGATTCTCTCCTA+GGG | + | chr8.1:81500560-81500579 | MS.gene072120:intron | 45.0% | |
| ! | ACCTCTGGTTCCTTCAGAAA+AGG | - | chr8.1:81499426-81499445 | None:intergenic | 45.0% |
| ! | GTTGCAAAGGCCTTTTCTGA+AGG | + | chr8.1:81499413-81499432 | MS.gene072120:CDS | 45.0% |
| ! | TGCTGCAAGGACCAAGTTTT+TGG | + | chr8.1:81502237-81502256 | MS.gene072120:CDS | 45.0% |
| !! | ATGGTTTGGTTCTATCCCCT+AGG | - | chr8.1:81500579-81500598 | None:intergenic | 45.0% |
| !!! | TGTACTTTTGAGATCCGCTG+TGG | - | chr8.1:81500993-81501012 | None:intergenic | 45.0% |
| !! | TTTATAAAAAAATTCTTATA+AGG | - | chr8.1:81500774-81500793 | None:intergenic | 5.0% |
| ACCCTTTCACCATTGGTAGG+TGG | + | chr8.1:81502100-81502119 | MS.gene072120:CDS | 50.0% | |
| ACCGCAACCATTGCCGTATT+AGG | + | chr8.1:81502196-81502215 | MS.gene072120:CDS | 50.0% | |
| CGAACGGAACCAAACCAGAA+AGG | - | chr8.1:81500549-81500568 | None:intergenic | 50.0% | |
| CTACCACTCTTTGGCCTGAA+GGG | - | chr8.1:81501316-81501335 | None:intergenic | 50.0% | |
| CTTAAGCAAGCTTCCTCGTG+TGG | + | chr8.1:81501337-81501356 | MS.gene072120:CDS | 50.0% | |
| GTTCCGTTCGATTCTCTCCT+AGG | + | chr8.1:81500559-81500578 | MS.gene072120:intron | 50.0% | |
| TATCCCTTCAGGCCAAAGAG+TGG | + | chr8.1:81501310-81501329 | MS.gene072120:CDS | 50.0% | |
| TCCCCTAGGAGAGAATCGAA+CGG | - | chr8.1:81500565-81500584 | None:intergenic | 50.0% | |
| TCCGTTCGATTCTCTCCTAG+GGG | + | chr8.1:81500561-81500580 | MS.gene072120:intron | 50.0% | |
| ! | AAAGCATCTGGTGACAGGGA+CGG | - | chr8.1:81499756-81499775 | None:intergenic | 50.0% |
| !! | ATTGGTCATGGTGGTGGAGT+AGG | + | chr8.1:81501200-81501219 | MS.gene072120:CDS | 50.0% |
| !! | GAACGAAGGTGGAAAGCATC+TGG | - | chr8.1:81499768-81499787 | None:intergenic | 50.0% |
| !! | GCCTTTTCTGAAGGAACCAG+AGG | + | chr8.1:81499422-81499441 | MS.gene072120:CDS | 50.0% |
| !! | GTGGAAAGCATCTGGTGACA+GGG | - | chr8.1:81499760-81499779 | None:intergenic | 50.0% |
| AAGCAAGCTTCCTCGTGTGG+CGG | + | chr8.1:81501340-81501359 | MS.gene072120:CDS | 55.0% | |
| AAGCATCTGGTGACAGGGAC+GGG | - | chr8.1:81499755-81499774 | None:intergenic | 55.0% | |
| CCTACCACTCTTTGGCCTGA+AGG | - | chr8.1:81501317-81501336 | None:intergenic | 55.0% | |
| CCTTCAGGCCAAAGAGTGGT+AGG | + | chr8.1:81501314-81501333 | MS.gene072120:CDS | 55.0% | |
| !! | GGTGGAAAGCATCTGGTGAC+AGG | - | chr8.1:81499761-81499780 | None:intergenic | 55.0% |
| AGCATCTGGTGACAGGGACG+GGG | - | chr8.1:81499754-81499773 | None:intergenic | 60.0% | |
| GCAAATGCTTCCGCCACACG+AGG | - | chr8.1:81501353-81501372 | None:intergenic | 60.0% | |
| !! | GGTCATGGTGGTGGAGTAGG+TGG | + | chr8.1:81501203-81501222 | MS.gene072120:CDS | 60.0% |
| GCATCTGGTGACAGGGACGG+GGG | - | chr8.1:81499753-81499772 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 81499236 | 81502297 | 81499236 | ID=MS.gene072120 |
| chr8.1 | mRNA | 81499236 | 81502297 | 81499236 | ID=MS.gene072120.t1;Parent=MS.gene072120 |
| chr8.1 | exon | 81499236 | 81499443 | 81499236 | ID=MS.gene072120.t1.exon1;Parent=MS.gene072120.t1 |
| chr8.1 | CDS | 81499236 | 81499443 | 81499236 | ID=cds.MS.gene072120.t1;Parent=MS.gene072120.t1 |
| chr8.1 | exon | 81501129 | 81502297 | 81501129 | ID=MS.gene072120.t1.exon2;Parent=MS.gene072120.t1 |
| chr8.1 | CDS | 81501129 | 81502297 | 81501129 | ID=cds.MS.gene072120.t1;Parent=MS.gene072120.t1 |
| Gene Sequence |
| Protein sequence |
