Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072219.t1 | XP_003627044.1 | 92.6 | 377 | 16 | 1 | 1 | 365 | 78 | 454 | 1.30E-195 | 692.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072219.t1 | G7LGP0 | 92.6 | 377 | 16 | 1 | 1 | 365 | 78 | 454 | 9.4e-196 | 692.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050297 | MS.gene072219 | 0.813064 | 3.09E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene072219 | 0.824451 | 8.01E-54 | -1.69E-46 |
| MS.gene055957 | MS.gene072219 | 0.801586 | 8.39E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene072219 | 0.804001 | 2.66E-49 | -1.69E-46 |
| MS.gene060565 | MS.gene072219 | 0.804902 | 1.73E-49 | -1.69E-46 |
| MS.gene061260 | MS.gene072219 | 0.819423 | 1.17E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072219.t1 | MTR_8g014490 | 92.573 | 377 | 16 | 1 | 1 | 365 | 78 | 454 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072219.t1 | AT4G12540 | 34.860 | 393 | 193 | 13 | 1 | 365 | 97 | 454 | 5.41e-50 | 174 |
| MS.gene072219.t1 | AT4G12540 | 34.351 | 393 | 195 | 13 | 1 | 365 | 80 | 437 | 4.00e-49 | 171 |
| MS.gene072219.t1 | AT4G12540 | 34.351 | 393 | 195 | 13 | 1 | 365 | 80 | 437 | 4.00e-49 | 171 |
| MS.gene072219.t1 | AT4G12540 | 34.351 | 393 | 195 | 13 | 1 | 365 | 73 | 430 | 4.50e-49 | 171 |
| MS.gene072219.t1 | AT4G12540 | 34.351 | 393 | 195 | 13 | 1 | 365 | 72 | 429 | 4.74e-49 | 171 |
Find 76 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCAGTGAAATCTAATT+TGG | 0.166349 | 8.1:-82851802 | None:intergenic |
| GAAAGTGAACTTTGTAATTT+TGG | 0.178876 | 8.1:-82851558 | None:intergenic |
| CTCCTTCGCCTCTTGTTTCA+TGG | 0.201608 | 8.1:+82851679 | MS.gene072219:CDS |
| TCAAGCAAAGCACAAGATTT+TGG | 0.208841 | 8.1:-82852014 | None:intergenic |
| AGAGAAAGGGCAGGCTTTAT+TGG | 0.223544 | 8.1:-82851876 | None:intergenic |
| ATACTTTGAAGAAGGAATTA+TGG | 0.234678 | 8.1:+82852636 | MS.gene072219:CDS |
| CACACGACATATTTCAGATA+TGG | 0.242872 | 8.1:-82852039 | None:intergenic |
| AATAATGATTCAGTGCTTTA+CGG | 0.286271 | 8.1:+82851834 | MS.gene072219:CDS |
| GATACTAATGTAGTCTCTTT+AGG | 0.311138 | 8.1:-82851657 | None:intergenic |
| GATAACAATGATTTCGATAA+TGG | 0.320197 | 8.1:-82851756 | None:intergenic |
| GTAAAGCACTGAATCATTAT+TGG | 0.331032 | 8.1:-82851832 | None:intergenic |
| TCAGAAGATTCTGAAGCTTC+TGG | 0.335637 | 8.1:+82852119 | MS.gene072219:CDS |
| TCCTTTCCAATTGCTGACTT+TGG | 0.336920 | 8.1:-82852206 | None:intergenic |
| TACTTTGAAGAAGGAATTAT+GGG | 0.338127 | 8.1:+82852637 | MS.gene072219:CDS |
| GAAAGGGTTTCTTGACCTAT+TGG | 0.342475 | 8.1:+82852727 | MS.gene072219:CDS |
| TTGTCCAACGATTTCTCATC+AGG | 0.375325 | 8.1:-82852293 | None:intergenic |
| GGTTTGTGGTTGGTGTGGTT+TGG | 0.378722 | 8.1:-82851781 | None:intergenic |
| CGATGGTGTGACGCAGGGTT+TGG | 0.387486 | 8.1:+82852145 | MS.gene072219:CDS |
| TGTGTTCCAAAGTCAGCAAT+TGG | 0.392723 | 8.1:+82852200 | MS.gene072219:CDS |
| ATTGACTTGTTGCTTAAGAA+TGG | 0.395329 | 8.1:-82852357 | None:intergenic |
| TAATGAACTCCAACAGGAAA+AGG | 0.401395 | 8.1:-82852089 | None:intergenic |
| CAATGTTTCCCCATGAGATC+TGG | 0.404517 | 8.1:-82852179 | None:intergenic |
| GTTTGAAACTTAGACTCAAA+TGG | 0.405729 | 8.1:-82852686 | None:intergenic |
| GGAGGTGAGGTAAGCCAAAC+AGG | 0.412175 | 8.1:-82852245 | None:intergenic |
| AATAAAGCCTGCCCTTTCTC+TGG | 0.439735 | 8.1:+82851878 | MS.gene072219:CDS |
| ATGTTGAAGCATCACCTGTT+TGG | 0.440053 | 8.1:+82852231 | MS.gene072219:CDS |
| CAAATTAGATTTCACTGAGT+TGG | 0.440495 | 8.1:+82851803 | MS.gene072219:CDS |
| ACACGACATATTTCAGATAT+GGG | 0.441396 | 8.1:-82852038 | None:intergenic |
| GTGAAATCTAATTTGGTTTG+TGG | 0.455967 | 8.1:-82851795 | None:intergenic |
| AATCTAATTTGGTTTGTGGT+TGG | 0.462236 | 8.1:-82851791 | None:intergenic |
| CCTCTTCACTCACCAGAGAA+AGG | 0.463469 | 8.1:-82851890 | None:intergenic |
| TCACTGTAATGAACTCCAAC+AGG | 0.463669 | 8.1:-82852095 | None:intergenic |
| CACAGGAAGCTTCTTCCAAT+AGG | 0.469810 | 8.1:-82852742 | None:intergenic |
| AGGGCAGGCTTTATTGGAGT+TGG | 0.475554 | 8.1:-82851870 | None:intergenic |
| CAATAAATTGAATGTGGAAG+AGG | 0.483861 | 8.1:+82852376 | MS.gene072219:CDS |
| AATGAACTCCAACAGGAAAA+GGG | 0.490414 | 8.1:-82852088 | None:intergenic |
| TGGCAGCGATGGTGTGACGC+AGG | 0.497686 | 8.1:+82852139 | MS.gene072219:CDS |
| GCATGAATTGATTTCTTCGC+CGG | 0.499731 | 8.1:+82851929 | MS.gene072219:CDS |
| CTCTTCACTCACCAGAGAAA+GGG | 0.500227 | 8.1:-82851889 | None:intergenic |
| TCAGTAAGAGTTCTCAGAAA+GGG | 0.502446 | 8.1:+82852711 | MS.gene072219:CDS |
| GTGTGGGTAATGATAAGTTT+CGG | 0.503235 | 8.1:+82852057 | MS.gene072219:CDS |
| GAAATCGTTGGACAAGGAAA+AGG | 0.507749 | 8.1:+82852301 | MS.gene072219:CDS |
| CCTTTCTCTGGTGAGTGAAG+AGG | 0.513821 | 8.1:+82851890 | MS.gene072219:CDS |
| TTGTTATCAAATGCAGCCAT+GGG | 0.516742 | 8.1:+82851533 | None:intergenic |
| AATGATTTCGATAATGGAAG+TGG | 0.516836 | 8.1:-82851750 | None:intergenic |
| CGCCATGAAACAAGAGGCGA+AGG | 0.518234 | 8.1:-82851681 | None:intergenic |
| GGCAGCGATGGTGTGACGCA+GGG | 0.523574 | 8.1:+82852140 | MS.gene072219:CDS |
| TTCACTTTCATCAACTTCAG+TGG | 0.526000 | 8.1:+82851572 | MS.gene072219:CDS |
| GTTGAAGTATCCAGATCTCA+TGG | 0.526419 | 8.1:+82852169 | MS.gene072219:CDS |
| TCTGAAGCTTCTGGCAGCGA+TGG | 0.532379 | 8.1:+82852128 | MS.gene072219:CDS |
| GTCAGTAAGAGTTCTCAGAA+AGG | 0.553014 | 8.1:+82852710 | MS.gene072219:CDS |
| TGGTGAAAATACTTTGAAGA+AGG | 0.558898 | 8.1:+82852628 | MS.gene072219:CDS |
| CATATCTGAAATATGTCGTG+TGG | 0.561959 | 8.1:+82852040 | MS.gene072219:CDS |
| ATACAAAGAGGGAAGCGTGC+TGG | 0.568703 | 8.1:+82852608 | MS.gene072219:CDS |
| TCACTCACCAGAGAAAGGGC+AGG | 0.573111 | 8.1:-82851885 | None:intergenic |
| AATTTGGTTTGTGGTTGGTG+TGG | 0.575140 | 8.1:-82851786 | None:intergenic |
| AGGAGTCATCATATAAAGCA+TGG | 0.581661 | 8.1:-82851973 | None:intergenic |
| AAGCACTGAATCATTATTGG+AGG | 0.583598 | 8.1:-82851829 | None:intergenic |
| ACAAGTCAATAAATTGAATG+TGG | 0.587588 | 8.1:+82852370 | MS.gene072219:CDS |
| TTGAAGTATCCAGATCTCAT+GGG | 0.591173 | 8.1:+82852170 | MS.gene072219:CDS |
| CCTGAAAACACGATACAAAG+AGG | 0.604121 | 8.1:+82852596 | MS.gene072219:CDS |
| ATGAACTCCAACAGGAAAAG+GGG | 0.611782 | 8.1:-82852087 | None:intergenic |
| GTTGTTATCAAATGCAGCCA+TGG | 0.614707 | 8.1:+82851532 | None:intergenic |
| GACACCTGATGAGAAATCGT+TGG | 0.616032 | 8.1:+82852289 | MS.gene072219:CDS |
| CTGAAAACACGATACAAAGA+GGG | 0.620143 | 8.1:+82852597 | MS.gene072219:CDS |
| AACTCCAACAGGAAAAGGGG+TGG | 0.626121 | 8.1:-82852084 | None:intergenic |
| TGATGAGAAATCGTTGGACA+AGG | 0.631692 | 8.1:+82852295 | MS.gene072219:CDS |
| TCCAAAGTCAGCAATTGGAA+AGG | 0.633354 | 8.1:+82852205 | MS.gene072219:CDS |
| TTAGCACGCCATGAAACAAG+AGG | 0.638632 | 8.1:-82851687 | None:intergenic |
| ATATCTGAAATATGTCGTGT+GGG | 0.639858 | 8.1:+82852041 | MS.gene072219:CDS |
| GTGGAAGAGGATATTTCCAA+AGG | 0.646607 | 8.1:+82852389 | MS.gene072219:CDS |
| TGAAGTATCCAGATCTCATG+GGG | 0.668354 | 8.1:+82852171 | MS.gene072219:CDS |
| TGTTATCAAATGCAGCCATG+GGG | 0.714680 | 8.1:+82851534 | None:intergenic |
| ATATAGAGAGCACTCCCATG+TGG | 0.723054 | 8.1:+82852567 | MS.gene072219:CDS |
| GCTAATTGTACTGTTCAGCG+AGG | 0.740131 | 8.1:+82851705 | MS.gene072219:CDS |
| AGTCATCATATAAAGCATGG+AGG | 0.749944 | 8.1:-82851970 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATAATGATTCAGTGCTTTA+CGG | + | chr8.1:82851834-82851853 | MS.gene072219:CDS | 25.0% |
| ! | ACAAGTCAATAAATTGAATG+TGG | + | chr8.1:82852370-82852389 | MS.gene072219:CDS | 25.0% |
| ! | AGCTATAAGGAATATATAAC+AGG | - | chr8.1:82852463-82852482 | None:intergenic | 25.0% |
| ! | GATAACAATGATTTCGATAA+TGG | - | chr8.1:82851759-82851778 | None:intergenic | 25.0% |
| !! | AAAAAATCTTGTTGTAACCA+AGG | + | chr8.1:82852425-82852444 | MS.gene072219:intron | 25.0% |
| !! | ATACTTTGAAGAAGGAATTA+TGG | + | chr8.1:82852636-82852655 | MS.gene072219:CDS | 25.0% |
| !! | GAAAGTGAACTTTGTAATTT+TGG | - | chr8.1:82851561-82851580 | None:intergenic | 25.0% |
| !! | TACTTTGAAGAAGGAATTAT+GGG | + | chr8.1:82852637-82852656 | MS.gene072219:CDS | 25.0% |
| !!! | CAAAAACTTGTGTTTTGTTA+GGG | + | chr8.1:82852267-82852286 | MS.gene072219:CDS | 25.0% |
| !!! | TATATTCCTTATAGCTTGTT+TGG | + | chr8.1:82852467-82852486 | MS.gene072219:intron | 25.0% |
| !!! | TTGGTTACAACAAGATTTTT+TGG | - | chr8.1:82852426-82852445 | None:intergenic | 25.0% |
| !!! | TTGTGTTTTTTCTTCTTTTC+AGG | + | chr8.1:82852521-82852540 | MS.gene072219:intron | 25.0% |
| ACACGACATATTTCAGATAT+GGG | - | chr8.1:82852041-82852060 | None:intergenic | 30.0% | |
| CAAATTAGATTTCACTGAGT+TGG | + | chr8.1:82851803-82851822 | MS.gene072219:CDS | 30.0% | |
| CAACTCAGTGAAATCTAATT+TGG | - | chr8.1:82851805-82851824 | None:intergenic | 30.0% | |
| CAATAAATTGAATGTGGAAG+AGG | + | chr8.1:82852376-82852395 | MS.gene072219:CDS | 30.0% | |
| GATACTAATGTAGTCTCTTT+AGG | - | chr8.1:82851660-82851679 | None:intergenic | 30.0% | |
| TGTTAACCAAACAAGCTATA+AGG | - | chr8.1:82852476-82852495 | None:intergenic | 30.0% | |
| ! | ATATCTGAAATATGTCGTGT+GGG | + | chr8.1:82852041-82852060 | MS.gene072219:CDS | 30.0% |
| ! | CCTAACAAAACACAAGTTTT+TGG | - | chr8.1:82852269-82852288 | None:intergenic | 30.0% |
| ! | GTTTGAAACTTAGACTCAAA+TGG | - | chr8.1:82852689-82852708 | None:intergenic | 30.0% |
| ! | TGGTGAAAATACTTTGAAGA+AGG | + | chr8.1:82852628-82852647 | MS.gene072219:CDS | 30.0% |
| !! | AACAAAACACAAGTTTTTGG+AGG | - | chr8.1:82852266-82852285 | None:intergenic | 30.0% |
| !! | AATCTAATTTGGTTTGTGGT+TGG | - | chr8.1:82851794-82851813 | None:intergenic | 30.0% |
| !! | AATGATTTCGATAATGGAAG+TGG | - | chr8.1:82851753-82851772 | None:intergenic | 30.0% |
| !! | ATAGCTTGTTTGGTTAACAT+GGG | + | chr8.1:82852477-82852496 | MS.gene072219:intron | 30.0% |
| !! | ATTGACTTGTTGCTTAAGAA+TGG | - | chr8.1:82852360-82852379 | None:intergenic | 30.0% |
| !! | CCAAAAACTTGTGTTTTGTT+AGG | + | chr8.1:82852266-82852285 | MS.gene072219:CDS | 30.0% |
| !! | GTAAAGCACTGAATCATTAT+TGG | - | chr8.1:82851835-82851854 | None:intergenic | 30.0% |
| !! | GTGAAATCTAATTTGGTTTG+TGG | - | chr8.1:82851798-82851817 | None:intergenic | 30.0% |
| !! | GTGTCTATTTTAGAAAGATC+CGG | - | chr8.1:82851951-82851970 | None:intergenic | 30.0% |
| !! | TATAGCTTGTTTGGTTAACA+TGG | + | chr8.1:82852476-82852495 | MS.gene072219:intron | 30.0% |
| AATGAACTCCAACAGGAAAA+GGG | - | chr8.1:82852091-82852110 | None:intergenic | 35.0% | |
| AGGAGTCATCATATAAAGCA+TGG | - | chr8.1:82851976-82851995 | None:intergenic | 35.0% | |
| AGTCATCATATAAAGCATGG+AGG | - | chr8.1:82851973-82851992 | None:intergenic | 35.0% | |
| CACACGACATATTTCAGATA+TGG | - | chr8.1:82852042-82852061 | None:intergenic | 35.0% | |
| CTGAAAACACGATACAAAGA+GGG | + | chr8.1:82852597-82852616 | MS.gene072219:CDS | 35.0% | |
| GTGTGGGTAATGATAAGTTT+CGG | + | chr8.1:82852057-82852076 | MS.gene072219:CDS | 35.0% | |
| TAATGAACTCCAACAGGAAA+AGG | - | chr8.1:82852092-82852111 | None:intergenic | 35.0% | |
| TCAGTAAGAGTTCTCAGAAA+GGG | + | chr8.1:82852711-82852730 | MS.gene072219:CDS | 35.0% | |
| TTCACTTTCATCAACTTCAG+TGG | + | chr8.1:82851572-82851591 | MS.gene072219:CDS | 35.0% | |
| ! | CATATCTGAAATATGTCGTG+TGG | + | chr8.1:82852040-82852059 | MS.gene072219:CDS | 35.0% |
| ! | TCAAGCAAAGCACAAGATTT+TGG | - | chr8.1:82852017-82852036 | None:intergenic | 35.0% |
| ! | TTGAAGTATCCAGATCTCAT+GGG | + | chr8.1:82852170-82852189 | MS.gene072219:CDS | 35.0% |
| !! | AAGCACTGAATCATTATTGG+AGG | - | chr8.1:82851832-82851851 | None:intergenic | 35.0% |
| !! | TTTGGCTTGATTATGACCTT+TGG | - | chr8.1:82852408-82852427 | None:intergenic | 35.0% |
| !!! | TTCTTTTCAGGTGATTTTGC+TGG | + | chr8.1:82852533-82852552 | MS.gene072219:intron | 35.0% |
| ATGAACTCCAACAGGAAAAG+GGG | - | chr8.1:82852090-82852109 | None:intergenic | 40.0% | |
| CCTGAAAACACGATACAAAG+AGG | + | chr8.1:82852596-82852615 | MS.gene072219:CDS | 40.0% | |
| GAAAGGGTTTCTTGACCTAT+TGG | + | chr8.1:82852727-82852746 | MS.gene072219:CDS | 40.0% | |
| GAAATCGTTGGACAAGGAAA+AGG | + | chr8.1:82852301-82852320 | MS.gene072219:CDS | 40.0% | |
| GTCAGTAAGAGTTCTCAGAA+AGG | + | chr8.1:82852710-82852729 | MS.gene072219:CDS | 40.0% | |
| GTGGAAGAGGATATTTCCAA+AGG | + | chr8.1:82852389-82852408 | MS.gene072219:CDS | 40.0% | |
| TCACTGTAATGAACTCCAAC+AGG | - | chr8.1:82852098-82852117 | None:intergenic | 40.0% | |
| TCCAAAGTCAGCAATTGGAA+AGG | + | chr8.1:82852205-82852224 | MS.gene072219:CDS | 40.0% | |
| TGATGAGAAATCGTTGGACA+AGG | + | chr8.1:82852295-82852314 | MS.gene072219:CDS | 40.0% | |
| TGTGTTCCAAAGTCAGCAAT+TGG | + | chr8.1:82852200-82852219 | MS.gene072219:CDS | 40.0% | |
| TTGTCCAACGATTTCTCATC+AGG | - | chr8.1:82852296-82852315 | None:intergenic | 40.0% | |
| TTGTTGTAACCAAGGTAGTG+TGG | + | chr8.1:82852433-82852452 | MS.gene072219:intron | 40.0% | |
| ! | AGCAAAGCACAAGATTTTGG+AGG | - | chr8.1:82852014-82852033 | None:intergenic | 40.0% |
| ! | ATGTTGAAGCATCACCTGTT+TGG | + | chr8.1:82852231-82852250 | MS.gene072219:CDS | 40.0% |
| ! | CCTCTTTGTATCGTGTTTTC+AGG | - | chr8.1:82852599-82852618 | None:intergenic | 40.0% |
| ! | GCATGAATTGATTTCTTCGC+CGG | + | chr8.1:82851929-82851948 | MS.gene072219:CDS | 40.0% |
| ! | GTTGAAGTATCCAGATCTCA+TGG | + | chr8.1:82852169-82852188 | MS.gene072219:CDS | 40.0% |
| ! | TGAAGTATCCAGATCTCATG+GGG | + | chr8.1:82852171-82852190 | MS.gene072219:CDS | 40.0% |
| !! | AACACAAGTTTTTGGAGGTG+AGG | - | chr8.1:82852261-82852280 | None:intergenic | 40.0% |
| !! | AATTTGGTTTGTGGTTGGTG+TGG | - | chr8.1:82851789-82851808 | None:intergenic | 40.0% |
| !! | CTTTGTAATTTTGGTCCCCA+TGG | - | chr8.1:82851552-82851571 | None:intergenic | 40.0% |
| !! | TCAGAAGATTCTGAAGCTTC+TGG | + | chr8.1:82852119-82852138 | MS.gene072219:CDS | 40.0% |
| !! | TCCTTTCCAATTGCTGACTT+TGG | - | chr8.1:82852209-82852228 | None:intergenic | 40.0% |
| !! | TTTTCAGGATTCAGCCACAT+GGG | - | chr8.1:82852584-82852603 | None:intergenic | 40.0% |
| AATAAAGCCTGCCCTTTCTC+TGG | + | chr8.1:82851878-82851897 | MS.gene072219:CDS | 45.0% | |
| CAATGTTTCCCCATGAGATC+TGG | - | chr8.1:82852182-82852201 | None:intergenic | 45.0% | |
| CACAGGAAGCTTCTTCCAAT+AGG | - | chr8.1:82852745-82852764 | None:intergenic | 45.0% | |
| CTCTTCACTCACCAGAGAAA+GGG | - | chr8.1:82851892-82851911 | None:intergenic | 45.0% | |
| GACACCTGATGAGAAATCGT+TGG | + | chr8.1:82852289-82852308 | MS.gene072219:CDS | 45.0% | |
| GCTAATTGTACTGTTCAGCG+AGG | + | chr8.1:82851705-82851724 | MS.gene072219:CDS | 45.0% | |
| TTAGCACGCCATGAAACAAG+AGG | - | chr8.1:82851690-82851709 | None:intergenic | 45.0% | |
| ! | AGAGAAAGGGCAGGCTTTAT+TGG | - | chr8.1:82851879-82851898 | None:intergenic | 45.0% |
| !! | ATATAGAGAGCACTCCCATG+TGG | + | chr8.1:82852567-82852586 | MS.gene072219:CDS | 45.0% |
| !! | GGAGGTGACATTTTCAAGCA+AGG | - | chr8.1:82851996-82852015 | None:intergenic | 45.0% |
| !! | GTTTTCAGGATTCAGCCACA+TGG | - | chr8.1:82852585-82852604 | None:intergenic | 45.0% |
| AACTCCAACAGGAAAAGGGG+TGG | - | chr8.1:82852087-82852106 | None:intergenic | 50.0% | |
| ACAGGTGAACCACACTACCT+TGG | - | chr8.1:82852445-82852464 | None:intergenic | 50.0% | |
| CCTCTTCACTCACCAGAGAA+AGG | - | chr8.1:82851893-82851912 | None:intergenic | 50.0% | |
| CCTTTCTCTGGTGAGTGAAG+AGG | + | chr8.1:82851890-82851909 | MS.gene072219:CDS | 50.0% | |
| ! | AAGTCCACCCCTTTTCCTGT+TGG | + | chr8.1:82852080-82852099 | MS.gene072219:CDS | 50.0% |
| ! | ATACAAAGAGGGAAGCGTGC+TGG | + | chr8.1:82852608-82852627 | MS.gene072219:CDS | 50.0% |
| ! | CTCCTTCGCCTCTTGTTTCA+TGG | + | chr8.1:82851679-82851698 | MS.gene072219:CDS | 50.0% |
| ! | GGTTTGTGGTTGGTGTGGTT+TGG | - | chr8.1:82851784-82851803 | None:intergenic | 50.0% |
| !! | AGGGCAGGCTTTATTGGAGT+TGG | - | chr8.1:82851873-82851892 | None:intergenic | 50.0% |
| CGCCATGAAACAAGAGGCGA+AGG | - | chr8.1:82851684-82851703 | None:intergenic | 55.0% | |
| GGAGGTGAGGTAAGCCAAAC+AGG | - | chr8.1:82852248-82852267 | None:intergenic | 55.0% | |
| TCACTCACCAGAGAAAGGGC+AGG | - | chr8.1:82851888-82851907 | None:intergenic | 55.0% | |
| ! | TCTGAAGCTTCTGGCAGCGA+TGG | + | chr8.1:82852128-82852147 | MS.gene072219:CDS | 55.0% |
| CGATGGTGTGACGCAGGGTT+TGG | + | chr8.1:82852145-82852164 | MS.gene072219:CDS | 60.0% | |
| GGCAGCGATGGTGTGACGCA+GGG | + | chr8.1:82852140-82852159 | MS.gene072219:CDS | 65.0% | |
| TGGCAGCGATGGTGTGACGC+AGG | + | chr8.1:82852139-82852158 | MS.gene072219:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 82851543 | 82852772 | 82851543 | ID=MS.gene072219 |
| chr8.1 | mRNA | 82851543 | 82852772 | 82851543 | ID=MS.gene072219.t1;Parent=MS.gene072219 |
| chr8.1 | exon | 82851543 | 82852410 | 82851543 | ID=MS.gene072219.t1.exon1;Parent=MS.gene072219.t1 |
| chr8.1 | CDS | 82851543 | 82852410 | 82851543 | ID=cds.MS.gene072219.t1;Parent=MS.gene072219.t1 |
| chr8.1 | exon | 82852543 | 82852772 | 82852543 | ID=MS.gene072219.t1.exon2;Parent=MS.gene072219.t1 |
| chr8.1 | CDS | 82852543 | 82852772 | 82852543 | ID=cds.MS.gene072219.t1;Parent=MS.gene072219.t1 |
| Gene Sequence |
| Protein sequence |
