AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052367


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052367.t1 MTR_4g077590 85.673 698 62 7 1 692 1 666 0.0 1110
MS.gene052367.t1 MTR_8g008690 87.179 39 5 0 1 39 1 39 1.48e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052367.t1 AT3G03130 37.799 209 99 6 1 205 1 182 9.81e-25 109
MS.gene052367.t1 AT5G17160 33.061 245 94 5 1 224 1 196 4.99e-20 94.7

Find 147 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTCTGAACCCTCTTCTTT+TGG 0.230668 4.4:+33230763 None:intergenic
TTCAGAAACATCATCATTCT+TGG 0.233698 4.4:+33231093 None:intergenic
TTCTGCTGAAATTGAAAATA+AGG 0.284898 4.4:-33230502 MS.gene052367:CDS
CACTCTACCTTCTCTGGTTC+AGG 0.287240 4.4:+33230054 None:intergenic
ACATTCAAAGGGGCAATAAC+TGG 0.287312 4.4:+33230255 None:intergenic
TCTTCTCCACTCCCTGCATT+TGG 0.315762 4.4:+33229500 None:intergenic
AGCAGGAATCTTGTTCATCT+TGG 0.352822 4.4:+33232117 None:intergenic
GAAAGCCAGTCACATGATTC+TGG 0.357776 4.4:-33230832 MS.gene052367:CDS
GGCATCTGAAGAAGCTTATA+AGG 0.358283 4.4:-33230289 MS.gene052367:CDS
AGGAACTGCTTGAATTTCAT+TGG 0.368042 4.4:+33229669 None:intergenic
TGCATGTTCCTCAGATTCAT+TGG 0.375527 4.4:+33229825 None:intergenic
CTGTCTTGCAGATTTAAACT+TGG 0.380530 4.4:+33230709 None:intergenic
GAAGGATACTTCTGAGAAAC+AGG 0.383185 4.4:-33229863 MS.gene052367:CDS
ATTGAAAATAAGGAATGCTT+TGG 0.386548 4.4:-33230492 MS.gene052367:CDS
CACCAGGAGGTCCGTGAGAT+TGG 0.391312 4.4:-33231170 MS.gene052367:CDS
CCAACATCACCACCTTCCTT+TGG 0.392508 4.4:+33231592 None:intergenic
GAGCTTGTCAAAGATGAGTT+TGG 0.403289 4.4:-33231140 MS.gene052367:CDS
GAGACTGCTGTGGTGCCTAA+TGG 0.404572 4.4:-33230132 MS.gene052367:CDS
TGATGCAGAGGATGTGTTGC+AGG 0.411045 4.4:-33230791 MS.gene052367:CDS
GATACACACTCTACCTTCTC+TGG 0.413375 4.4:+33230048 None:intergenic
ACTAGCTTTCTGAAAATCAA+TGG 0.418698 4.4:+33229594 None:intergenic
AGGATCTGAGCAGCCTGAAC+AGG 0.426452 4.4:-33230538 MS.gene052367:CDS
GAAAGAAGCTGAAAGCTCTA+AGG 0.427642 4.4:-33231512 MS.gene052367:CDS
ATGGTTTCTGAGCAGATAAA+TGG 0.429962 4.4:-33229733 MS.gene052367:CDS
CCAGTACCACTCTCAATACT+AGG 0.435481 4.4:+33229649 None:intergenic
TTCTGACTGAGCTGGGCAAA+GGG 0.438060 4.4:+33229705 None:intergenic
ACATCCACAAAAGCATCTTC+AGG 0.439980 4.4:+33230345 None:intergenic
GTTCCTAACCAAGATGTTGC+TGG 0.449433 4.4:-33230324 MS.gene052367:CDS
GAGCTTTCAGCTTCTTTCAC+CGG 0.458995 4.4:+33231517 None:intergenic
CCTAGTATTGAGAGTGGTAC+TGG 0.465761 4.4:-33229649 MS.gene052367:CDS
TGGTACCTGATGATGCTTGT+GGG 0.466839 4.4:-33230230 MS.gene052367:CDS
GATGGAACTTCTGGTGACTC+TGG 0.468489 4.4:-33230003 MS.gene052367:CDS
AACTAGTGATATAGAGTCAA+TGG 0.475796 4.4:-33229752 MS.gene052367:CDS
CCCAGCTCAGTCAGAAATCA+AGG 0.476348 4.4:-33229698 MS.gene052367:CDS
TCCTTGATTTCTGACTGAGC+TGG 0.477329 4.4:+33229697 None:intergenic
GAAGGTAGAGTGTGTATCTT+CGG 0.478549 4.4:-33230043 MS.gene052367:CDS
TAAGAATGAGGTTCAAGAAA+AGG 0.483344 4.4:-33231308 MS.gene052367:CDS
CAAGAGCTAGTCGTTCGGTT+CGG 0.485521 4.4:-33231240 MS.gene052367:CDS
CTGCTGTTGGTAGTAGGAGA+AGG 0.486707 4.4:-33231396 MS.gene052367:CDS
CTGATTGTAGGTTGAAGGAT+TGG 0.490967 4.4:-33231629 MS.gene052367:intron
CAGTCAAAGAAGCAATAGTT+TGG 0.491962 4.4:+33230376 None:intergenic
CAGACATATCAGCAACATCT+TGG 0.492555 4.4:+33230196 None:intergenic
AGCACTGCCACAGAATCAAC+TGG 0.493549 4.4:-33229461 MS.gene052367:CDS
CACCAATCTCACGGACCTCC+TGG 0.499335 4.4:+33231168 None:intergenic
TTAGGCACCACAGCAGTCTC+AGG 0.501559 4.4:+33230135 None:intergenic
ATGAGTGTCTCCCAGAATGA+AGG 0.502489 4.4:-33231067 MS.gene052367:CDS
TTGAACTGATTGTAGGTTGA+AGG 0.505205 4.4:-33231634 MS.gene052367:intron
GCAACATTGGTGATATTAGC+AGG 0.506497 4.4:+33232100 None:intergenic
TTTGCGGGTTCTCAAGAAGT+TGG 0.506912 4.4:-33229572 MS.gene052367:CDS
GAGACAAGCCAGCAACATCT+TGG 0.507441 4.4:+33230316 None:intergenic
TTTCTGACTGAGCTGGGCAA+AGG 0.508078 4.4:+33229704 None:intergenic
CAGGTACCACAACATTCAAA+GGG 0.510126 4.4:+33230244 None:intergenic
TCATCCCCACAAGCATCATC+AGG 0.511382 4.4:+33230225 None:intergenic
AGCGTCAGCCATGGCAACAT+TGG 0.512064 4.4:+33232087 None:intergenic
AAGCCAGCAACATCTTGGTT+AGG 0.512461 4.4:+33230321 None:intergenic
TGCGCTGATTCAAATGAAGC+AGG 0.514107 4.4:-33230676 MS.gene052367:intron
TGTCTTGCAGATTTAAACTT+GGG 0.515264 4.4:+33230710 None:intergenic
AGGGTTAGCCGTGGTGGTAG+AGG 0.519152 4.4:-33231481 MS.gene052367:CDS
CCAAAGGAAGGTGGTGATGT+TGG 0.519158 4.4:-33231592 MS.gene052367:CDS
TGCAGAAGGCATACAGCACC+AGG 0.521391 4.4:-33231186 MS.gene052367:CDS
AACTACGACTCAAAGGAAAC+CGG 0.522136 4.4:-33231536 MS.gene052367:CDS
CAGGAGGTCCGTGAGATTGG+TGG 0.523155 4.4:-33231167 MS.gene052367:CDS
TATTGCCCCTTTGAATGTTG+TGG 0.523826 4.4:-33230250 MS.gene052367:CDS
GGTAGAGGCGGAGTTGCTGA+AGG 0.524777 4.4:-33231466 MS.gene052367:CDS
TGTTGCTGGCTTGTCTCTTG+AGG 0.525980 4.4:-33230310 MS.gene052367:CDS
CCTTGATTTCTGACTGAGCT+GGG 0.528460 4.4:+33229698 None:intergenic
AAAGAAAGAAGAAGATCAGA+AGG 0.530077 4.4:-33229881 MS.gene052367:CDS
AGGAGGTCCGTGAGATTGGT+GGG 0.530257 4.4:-33231166 MS.gene052367:CDS
CATTCTACAACTCTCAATGT+TGG 0.532664 4.4:-33229914 MS.gene052367:CDS
ATGTGACTGGCTTTCACAGT+CGG 0.537942 4.4:+33230840 None:intergenic
TTCTCAGAACACTGATGAAG+TGG 0.539221 4.4:-33230884 MS.gene052367:CDS
GGCTCAATTGAGACTGAAAA+CGG 0.539870 4.4:-33231043 MS.gene052367:intron
TCAGGTACCACAACATTCAA+AGG 0.540020 4.4:+33230243 None:intergenic
TGCTGTTGGTAGTAGGAGAA+GGG 0.540948 4.4:-33231395 MS.gene052367:CDS
AGCTGAGAGAGCGTCAGCCA+TGG 0.542842 4.4:+33232078 None:intergenic
GTACTCCTGCTGTTGGTAGT+AGG 0.544663 4.4:-33231402 MS.gene052367:CDS
TGGCAATCCTAATACGATGA+AGG 0.546509 4.4:-33229629 MS.gene052367:CDS
GCTGTTCGTGGTTGAACAGC+TGG 0.547146 4.4:+33231565 None:intergenic
TGATGAAACTTCAGTGCAGA+AGG 0.548635 4.4:-33231200 MS.gene052367:CDS
CTCGTAAAACTACGACTCAA+AGG 0.551802 4.4:-33231543 MS.gene052367:CDS
ATGCAGCAATCTCCATAGCT+TGG 0.554047 4.4:+33230457 None:intergenic
AGTTTCTACTCGCAGAAAGA+AGG 0.556570 4.4:-33231365 MS.gene052367:CDS
TGAGTGTCTCCCAGAATGAA+GGG 0.557369 4.4:-33231066 MS.gene052367:CDS
CATTCAAAGGGGCAATAACT+GGG 0.557703 4.4:+33230256 None:intergenic
GAAGTCTCTATAGCTCCATT+AGG 0.562424 4.4:+33230117 None:intergenic
TAATGATGATGTCCAAATGC+AGG 0.563195 4.4:-33229512 MS.gene052367:CDS
TACTCAGCCAGTTGATTCTG+TGG 0.563934 4.4:+33229454 None:intergenic
GTTGGTGAAGGAGAAGTTAG+CGG 0.565443 4.4:-33229554 MS.gene052367:CDS
GCTCTTTACGTGAGAGAGTG+TGG 0.574355 4.4:+33232152 None:intergenic
CTGAACCAGAATCATGTGAC+TGG 0.574401 4.4:+33230827 None:intergenic
GTTTGGTCAGCAATCTCCAC+AGG 0.574780 4.4:+33230393 None:intergenic
GGAGATTGCTGCATCTGAAG+AGG 0.576864 4.4:-33230448 MS.gene052367:CDS
ATTTGAACCTGAACCAGAGA+AGG 0.582000 4.4:-33230061 MS.gene052367:CDS
CTAGCTCTTGTCCTACTGCT+AGG 0.582951 4.4:+33231253 None:intergenic
AGAGGTTGTCAATGATGTGG+AGG 0.583619 4.4:-33230746 MS.gene052367:CDS
TAGAGGCGGAGTTGCTGAAG+GGG 0.583738 4.4:-33231464 MS.gene052367:CDS
CTTGTCAAAGATGAGTTTGG+CGG 0.585321 4.4:-33231137 MS.gene052367:CDS
TAGGACAAGAGCTAGTCGTT+CGG 0.587545 4.4:-33231245 MS.gene052367:CDS
AGCTGAGCAAGACCAAGCTA+TGG 0.590087 4.4:-33230469 MS.gene052367:CDS
GTTAGCCGTGGTGGTAGAGG+CGG 0.590505 4.4:-33231478 MS.gene052367:CDS
AAAGCTCTAAGGTTTCTACA+AGG 0.590674 4.4:-33231501 MS.gene052367:CDS
TTCAGAGGTTGTCAATGATG+TGG 0.593177 4.4:-33230749 MS.gene052367:CDS
TCTACAAGGGTTAGCCGTGG+TGG 0.595736 4.4:-33231487 MS.gene052367:CDS
AAAGATGCTAATGTAGCTGC+CGG 0.596201 4.4:-33231424 MS.gene052367:CDS
TTTGGCGGACACTGAGGACA+CGG 0.596803 4.4:-33231122 MS.gene052367:CDS
ACTACCAACAGCAGGAGTAC+CGG 0.597108 4.4:+33231405 None:intergenic
CTGCTGTAGCTCCTAGCAGT+AGG 0.598663 4.4:-33231264 MS.gene052367:CDS
GCAGGCTGAACCAAAAGAAG+AGG 0.598862 4.4:-33230773 MS.gene052367:CDS
GTAGAGGCGGAGTTGCTGAA+GGG 0.599107 4.4:-33231465 MS.gene052367:CDS
GCTCTTCCCCACCAATCTCA+CGG 0.601608 4.4:+33231159 None:intergenic
AGTGAAATCAACTGATGCAG+AGG 0.603053 4.4:-33230803 MS.gene052367:CDS
TAATATCACCAATGTTGCCA+TGG 0.610959 4.4:-33232095 MS.gene052367:CDS
TGATGTCCAAATGCAGGGAG+TGG 0.611592 4.4:-33229506 MS.gene052367:CDS
TCAAGAAAAGGCTATGAATG+TGG 0.615906 4.4:-33231296 MS.gene052367:CDS
TTTCTGCGAGTAGAAACTGC+AGG 0.617291 4.4:+33231370 None:intergenic
CTTCTCCTACTACCAACAGC+AGG 0.618516 4.4:+33231397 None:intergenic
AAGCTCTAAGGTTTCTACAA+GGG 0.623138 4.4:-33231500 MS.gene052367:CDS
ACAGTCGGCTTTGTTTAGAG+AGG 0.625691 4.4:+33230855 None:intergenic
TGCATCTGAAGAGGTTTCTG+TGG 0.629076 4.4:-33230439 MS.gene052367:CDS
GTGGTACCTGATGATGCTTG+TGG 0.629889 4.4:-33230231 MS.gene052367:CDS
CTACTGCTAGGAGCTACAGC+AGG 0.631861 4.4:+33231265 None:intergenic
GGAGATTGCTGCATCAGAAG+AGG 0.632413 4.4:-33230418 MS.gene052367:CDS
TGACTCTGGAGCTGAAAATG+AGG 0.632609 4.4:-33229989 MS.gene052367:CDS
ACCAAAAGAAGAGGGTTCAG+AGG 0.638218 4.4:-33230764 MS.gene052367:CDS
AGAAGACACTGAGTTTGATG+AGG 0.640026 4.4:-33229797 MS.gene052367:CDS
GGTTCTCAAGAAGTTGGTGA+AGG 0.640400 4.4:-33229566 MS.gene052367:CDS
AGCACAAACCAATGAATCTG+AGG 0.641528 4.4:-33229833 MS.gene052367:CDS
CAGGCTGAACCAAAAGAAGA+GGG 0.643045 4.4:-33230772 MS.gene052367:CDS
GCTGCCGGTACTCCTGCTGT+TGG 0.646328 4.4:-33231409 MS.gene052367:CDS
TGATGTGGAGGTTTCACATG+AGG 0.650771 4.4:-33230734 MS.gene052367:CDS
GAGTGTCTCCCAGAATGAAG+GGG 0.652351 4.4:-33231065 MS.gene052367:CDS
GGAGGTCCGTGAGATTGGTG+GGG 0.652841 4.4:-33231165 MS.gene052367:CDS
AGCTATAGAGACTTCTTCAG+AGG 0.662401 4.4:-33230109 MS.gene052367:CDS
GGTACCTGATGATGCTTGTG+GGG 0.662615 4.4:-33230229 MS.gene052367:CDS
TTCGCAGACAGAATCAAATG+TGG 0.665529 4.4:-33230908 MS.gene052367:CDS
TATTGCTCCTGAGACTGCTG+TGG 0.667509 4.4:-33230142 MS.gene052367:CDS
TGCATCAGAAGAGGTTCCTG+TGG 0.672037 4.4:-33230409 MS.gene052367:CDS
GCAGTTCCTAGTATTGAGAG+TGG 0.672883 4.4:-33229655 MS.gene052367:CDS
AATGATGATGTCCAAATGCA+GGG 0.674488 4.4:-33229511 MS.gene052367:CDS
TCTGACTGAGCTGGGCAAAG+GGG 0.676525 4.4:+33229706 None:intergenic
GTTTCTACAAGGGTTAGCCG+TGG 0.679018 4.4:-33231490 MS.gene052367:CDS
GATGAGTTTGGCGGACACTG+AGG 0.679917 4.4:-33231128 MS.gene052367:CDS
TGATGATGTTGATAAGAATG+AGG 0.682068 4.4:-33231320 MS.gene052367:CDS
AGTGTCTCCCAGAATGAAGG+GGG 0.688959 4.4:-33231064 MS.gene052367:CDS
AGGTACCACAACATTCAAAG+GGG 0.740202 4.4:+33230245 None:intergenic
CAACTCCGCCTCTACCACCA+CGG 0.745976 4.4:+33231473 None:intergenic
AGAAGGCATACAGCACCAGG+AGG 0.747195 4.4:-33231183 MS.gene052367:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCATTAGATTTGTAAAAT+TGG - chr4.4:33229913-33229932 MS.gene052367:CDS 15.0%
!!! CAGTTCTTTATTTTTTAATT+TGG - chr4.4:33229597-33229616 MS.gene052367:CDS 15.0%
!! TTTACAAATCTAATGAAACA+TGG + chr4.4:33229911-33229930 None:intergenic 20.0%
! AACTGAACTAAATCAAGAAA+TGG + chr4.4:33229582-33229601 None:intergenic 25.0%
! ACAATACAATACAGTTTCAA+TGG + chr4.4:33229881-33229900 None:intergenic 25.0%
! ATTGAAAATAAGGAATGCTT+TGG - chr4.4:33231121-33231140 MS.gene052367:CDS 25.0%
! TGAAGTATATTAAGTCGATT+AGG - chr4.4:33229702-33229721 MS.gene052367:CDS 25.0%
! TTCTGCTGAAATTGAAAATA+AGG - chr4.4:33231111-33231130 MS.gene052367:CDS 25.0%
!! CGATTAGGTTTTTCATTTTA+GGG - chr4.4:33229717-33229736 MS.gene052367:CDS 25.0%
!! GATTAGGTTTTTCATTTTAG+GGG - chr4.4:33229718-33229737 MS.gene052367:CDS 25.0%
!! TCGATTAGGTTTTTCATTTT+AGG - chr4.4:33229716-33229735 MS.gene052367:CDS 25.0%
!! TTGATTTTTATGATCTTGAC+TGG - chr4.4:33229756-33229775 MS.gene052367:CDS 25.0%
!!! ATTTGATTTGAACTGATTGT+AGG - chr4.4:33229972-33229991 MS.gene052367:CDS 25.0%
AAAGAAAGAAGAAGATCAGA+AGG - chr4.4:33231732-33231751 MS.gene052367:intron 30.0%
AACTAGTGATATAGAGTCAA+TGG - chr4.4:33231861-33231880 MS.gene052367:intron 30.0%
AATGGAGAAAGATTTACATG+AGG + chr4.4:33229564-33229583 None:intergenic 30.0%
GAAGACAAAAAAGAAAGCAA+CGG - chr4.4:33231664-33231683 MS.gene052367:intron 30.0%
TAAGAATGAGGTTCAAGAAA+AGG - chr4.4:33230305-33230324 MS.gene052367:CDS 30.0%
TGTCTTGCAGATTTAAACTT+GGG + chr4.4:33230906-33230925 None:intergenic 30.0%
TTCAGAAACATCATCATTCT+TGG + chr4.4:33230523-33230542 None:intergenic 30.0%
! CTTGATGTTGATCATTTTAC+AGG - chr4.4:33231055-33231074 MS.gene052367:CDS 30.0%
! GAAATTTTGAATCCAAAGGA+AGG - chr4.4:33230009-33230028 MS.gene052367:CDS 30.0%
! GCTATTCTAGTTGAAAAAGA+TGG - chr4.4:33231592-33231611 MS.gene052367:CDS 30.0%
! GGATGAAATTTTGAATCCAA+AGG - chr4.4:33230005-33230024 MS.gene052367:CDS 30.0%
! TGATGATGTTGATAAGAATG+AGG - chr4.4:33230293-33230312 MS.gene052367:CDS 30.0%
! TTTTATGATCTTGACTGGAT+TGG - chr4.4:33229761-33229780 MS.gene052367:CDS 30.0%
!! ACTAGCTTTCTGAAAATCAA+TGG + chr4.4:33232022-33232041 None:intergenic 30.0%
!! ATTTTCAGAAAGCTAGTTTG+CGG - chr4.4:33232025-33232044 MS.gene052367:intron 30.0%
!!! CTTTTTTGTCTTCAAAGGAT+TGG + chr4.4:33231657-33231676 None:intergenic 30.0%
!!! GCTTTCTTTTTTGTCTTCAA+AGG + chr4.4:33231662-33231681 None:intergenic 30.0%
!!! TTTGTTTTGCAATATGCTTG+TGG - chr4.4:33230960-33230979 MS.gene052367:intron 30.0%
AGGAACTGCTTGAATTTCAT+TGG + chr4.4:33231947-33231966 None:intergenic 35.0%
ATGGTTTCTGAGCAGATAAA+TGG - chr4.4:33231880-33231899 MS.gene052367:intron 35.0%
CAGTCAAAGAAGCAATAGTT+TGG + chr4.4:33231240-33231259 None:intergenic 35.0%
CATTCTACAACTCTCAATGT+TGG - chr4.4:33231699-33231718 MS.gene052367:intron 35.0%
CTGTCTTGCAGATTTAAACT+TGG + chr4.4:33230907-33230926 None:intergenic 35.0%
GTTGAAAAAGATGGAACTTC+TGG - chr4.4:33231601-33231620 MS.gene052367:CDS 35.0%
TAATATCACCAATGTTGCCA+TGG - chr4.4:33229518-33229537 MS.gene052367:CDS 35.0%
TCAAGAAAAGGCTATGAATG+TGG - chr4.4:33230317-33230336 MS.gene052367:CDS 35.0%
! AATGATGATGTCCAAATGCA+GGG - chr4.4:33232102-33232121 MS.gene052367:CDS 35.0%
! ATTTTGAATCCAAAGGAAGG+TGG - chr4.4:33230012-33230031 MS.gene052367:CDS 35.0%
! GAGTTTTCCTTCATCGTATT+AGG + chr4.4:33231994-33232013 None:intergenic 35.0%
! TAATGATGATGTCCAAATGC+AGG - chr4.4:33232101-33232120 MS.gene052367:CDS 35.0%
! TTGAACTGATTGTAGGTTGA+AGG - chr4.4:33229979-33229998 MS.gene052367:CDS 35.0%
!! AAAGCTCTAAGGTTTCTACA+AGG - chr4.4:33230112-33230131 MS.gene052367:CDS 35.0%
!! AAGCTCTAAGGTTTCTACAA+GGG - chr4.4:33230113-33230132 MS.gene052367:CDS 35.0%
!! CATTTTAGGGGTTTTCAGTT+CGG - chr4.4:33229730-33229749 MS.gene052367:CDS 35.0%
!! TTTTCAGAAAGCTAGTTTGC+GGG - chr4.4:33232026-33232045 MS.gene052367:intron 35.0%
AAAGATGCTAATGTAGCTGC+CGG - chr4.4:33230189-33230208 MS.gene052367:CDS 40.0%
AACTACGACTCAAAGGAAAC+CGG - chr4.4:33230077-33230096 MS.gene052367:CDS 40.0%
ACATTCAAAGGGGCAATAAC+TGG + chr4.4:33231361-33231380 None:intergenic 40.0%
AGAAGACACTGAGTTTGATG+AGG - chr4.4:33231816-33231835 MS.gene052367:intron 40.0%
AGCACAAACCAATGAATCTG+AGG - chr4.4:33231780-33231799 MS.gene052367:intron 40.0%
AGCAGGAATCTTGTTCATCT+TGG + chr4.4:33229499-33229518 None:intergenic 40.0%
AGCTATAGAGACTTCTTCAG+AGG - chr4.4:33231504-33231523 MS.gene052367:CDS 40.0%
AGGTACCACAACATTCAAAG+GGG + chr4.4:33231371-33231390 None:intergenic 40.0%
AGTGAAATCAACTGATGCAG+AGG - chr4.4:33230810-33230829 MS.gene052367:CDS 40.0%
AGTTTCTACTCGCAGAAAGA+AGG - chr4.4:33230248-33230267 MS.gene052367:CDS 40.0%
ATTTGAACCTGAACCAGAGA+AGG - chr4.4:33231552-33231571 MS.gene052367:CDS 40.0%
CAGACATATCAGCAACATCT+TGG + chr4.4:33231420-33231439 None:intergenic 40.0%
CAGGTACCACAACATTCAAA+GGG + chr4.4:33231372-33231391 None:intergenic 40.0%
CATTCAAAGGGGCAATAACT+GGG + chr4.4:33231360-33231379 None:intergenic 40.0%
CTCGTAAAACTACGACTCAA+AGG - chr4.4:33230070-33230089 MS.gene052367:CDS 40.0%
CTTGTCAAAGATGAGTTTGG+CGG - chr4.4:33230476-33230495 MS.gene052367:CDS 40.0%
GAAAGAAGCTGAAAGCTCTA+AGG - chr4.4:33230101-33230120 MS.gene052367:CDS 40.0%
GAAGGTAGAGTGTGTATCTT+CGG - chr4.4:33231570-33231589 MS.gene052367:CDS 40.0%
GAAGTCTCTATAGCTCCATT+AGG + chr4.4:33231499-33231518 None:intergenic 40.0%
GAGCTTGTCAAAGATGAGTT+TGG - chr4.4:33230473-33230492 MS.gene052367:CDS 40.0%
GGCATCTGAAGAAGCTTATA+AGG - chr4.4:33231324-33231343 MS.gene052367:CDS 40.0%
GGCTCAATTGAGACTGAAAA+CGG - chr4.4:33230570-33230589 MS.gene052367:intron 40.0%
TATTGCCCCTTTGAATGTTG+TGG - chr4.4:33231363-33231382 MS.gene052367:CDS 40.0%
TCAGGTACCACAACATTCAA+AGG + chr4.4:33231373-33231392 None:intergenic 40.0%
TGATGAAACTTCAGTGCAGA+AGG - chr4.4:33230413-33230432 MS.gene052367:CDS 40.0%
TGCATGTTCCTCAGATTCAT+TGG + chr4.4:33231791-33231810 None:intergenic 40.0%
TGGCAATCCTAATACGATGA+AGG - chr4.4:33231984-33232003 MS.gene052367:intron 40.0%
TTCAGAGGTTGTCAATGATG+TGG - chr4.4:33230864-33230883 MS.gene052367:CDS 40.0%
TTCGCAGACAGAATCAAATG+TGG - chr4.4:33230705-33230724 MS.gene052367:CDS 40.0%
TTCTCAGAACACTGATGAAG+TGG - chr4.4:33230729-33230748 MS.gene052367:CDS 40.0%
! CTGATTGTAGGTTGAAGGAT+TGG - chr4.4:33229984-33230003 MS.gene052367:CDS 40.0%
! GAAGGATACTTCTGAGAAAC+AGG - chr4.4:33231750-33231769 MS.gene052367:intron 40.0%
! GCAACATTGGTGATATTAGC+AGG + chr4.4:33229516-33229535 None:intergenic 40.0%
! TCACAAGTTTTCTCCTGTTC+AGG + chr4.4:33231091-33231110 None:intergenic 40.0%
! TGAACCTGAAGATGCTTTTG+TGG - chr4.4:33231264-33231283 MS.gene052367:CDS 40.0%
!! ACATCCACAAAAGCATCTTC+AGG + chr4.4:33231271-33231290 None:intergenic 40.0%
AAGCCAGCAACATCTTGGTT+AGG + chr4.4:33231295-33231314 None:intergenic 45.0%
AATTGAGCCCCCTTCATTCT+GGG + chr4.4:33230559-33230578 None:intergenic 45.0%
ACCAAAAGAAGAGGGTTCAG+AGG - chr4.4:33230849-33230868 MS.gene052367:CDS 45.0%
AGAGGTTGTCAATGATGTGG+AGG - chr4.4:33230867-33230886 MS.gene052367:CDS 45.0%
ATGAGTGTCTCCCAGAATGA+AGG - chr4.4:33230546-33230565 MS.gene052367:intron 45.0%
ATGCAGCAATCTCCATAGCT+TGG + chr4.4:33231159-33231178 None:intergenic 45.0%
CAGGCTGAACCAAAAGAAGA+GGG - chr4.4:33230841-33230860 MS.gene052367:CDS 45.0%
CCAGTACCACTCTCAATACT+AGG + chr4.4:33231967-33231986 None:intergenic 45.0%
CCTTGATTTCTGACTGAGCT+GGG + chr4.4:33231918-33231937 None:intergenic 45.0%
CTGAACCAGAATCATGTGAC+TGG + chr4.4:33230789-33230808 None:intergenic 45.0%
GAAAGCCAGTCACATGATTC+TGG - chr4.4:33230781-33230800 MS.gene052367:CDS 45.0%
GAGCTTTCAGCTTCTTTCAC+CGG + chr4.4:33230099-33230118 None:intergenic 45.0%
GATACACACTCTACCTTCTC+TGG + chr4.4:33231568-33231587 None:intergenic 45.0%
GTTCCTAACCAAGATGTTGC+TGG - chr4.4:33231289-33231308 MS.gene052367:CDS 45.0%
TAGGACAAGAGCTAGTCGTT+CGG - chr4.4:33230368-33230387 MS.gene052367:CDS 45.0%
TCCTTGATTTCTGACTGAGC+TGG + chr4.4:33231919-33231938 None:intergenic 45.0%
TGAGTGTCTCCCAGAATGAA+GGG - chr4.4:33230547-33230566 MS.gene052367:intron 45.0%
TGATGTGGAGGTTTCACATG+AGG - chr4.4:33230879-33230898 MS.gene052367:CDS 45.0%
TGCATCTGAAGAGGTTTCTG+TGG - chr4.4:33231174-33231193 MS.gene052367:CDS 45.0%
TTTCTGCGAGTAGAAACTGC+AGG + chr4.4:33230246-33230265 None:intergenic 45.0%
TTTGCGGGTTCTCAAGAAGT+TGG - chr4.4:33232041-33232060 MS.gene052367:intron 45.0%
! ACCTCTGAACCCTCTTCTTT+TGG + chr4.4:33230853-33230872 None:intergenic 45.0%
! CCTAGTATTGAGAGTGGTAC+TGG - chr4.4:33231964-33231983 MS.gene052367:intron 45.0%
! GCAGTTCCTAGTATTGAGAG+TGG - chr4.4:33231958-33231977 MS.gene052367:intron 45.0%
! GTTGGTGAAGGAGAAGTTAG+CGG - chr4.4:33232059-33232078 MS.gene052367:intron 45.0%
! TACTCAGCCAGTTGATTCTG+TGG + chr4.4:33232162-33232181 None:intergenic 45.0%
! TGGTACCTGATGATGCTTGT+GGG - chr4.4:33231383-33231402 MS.gene052367:CDS 45.0%
!! ACAGTCGGCTTTGTTTAGAG+AGG + chr4.4:33230761-33230780 None:intergenic 45.0%
!! ATGTGACTGGCTTTCACAGT+CGG + chr4.4:33230776-33230795 None:intergenic 45.0%
!! GGTTCTCAAGAAGTTGGTGA+AGG - chr4.4:33232047-33232066 MS.gene052367:intron 45.0%
!! GTAGTTTTACGAGCTGTTCG+TGG + chr4.4:33230063-33230082 None:intergenic 45.0%
!! TGACTCTGGAGCTGAAAATG+AGG - chr4.4:33231624-33231643 MS.gene052367:intron 45.0%
!! TGCGCTGATTCAAATGAAGC+AGG - chr4.4:33230937-33230956 MS.gene052367:intron 45.0%
!! TGCTGTTGGTAGTAGGAGAA+GGG - chr4.4:33230218-33230237 MS.gene052367:CDS 45.0%
AGCACTGCCACAGAATCAAC+TGG - chr4.4:33232152-33232171 MS.gene052367:CDS 50.0%
AGCTGAGCAAGACCAAGCTA+TGG - chr4.4:33231144-33231163 MS.gene052367:CDS 50.0%
AGTGTCTCCCAGAATGAAGG+GGG - chr4.4:33230549-33230568 MS.gene052367:intron 50.0%
CAAGAGCTAGTCGTTCGGTT+CGG - chr4.4:33230373-33230392 MS.gene052367:CDS 50.0%
CAATTGAGCCCCCTTCATTC+TGG + chr4.4:33230560-33230579 None:intergenic 50.0%
CCAACATCACCACCTTCCTT+TGG + chr4.4:33230024-33230043 None:intergenic 50.0%
CCCAGCTCAGTCAGAAATCA+AGG - chr4.4:33231915-33231934 MS.gene052367:intron 50.0%
CTTCTCCTACTACCAACAGC+AGG + chr4.4:33230219-33230238 None:intergenic 50.0%
GAGACAAGCCAGCAACATCT+TGG + chr4.4:33231300-33231319 None:intergenic 50.0%
GAGTGTCTCCCAGAATGAAG+GGG - chr4.4:33230548-33230567 MS.gene052367:intron 50.0%
GATGGAACTTCTGGTGACTC+TGG - chr4.4:33231610-33231629 MS.gene052367:CDS 50.0%
GCAGGCTGAACCAAAAGAAG+AGG - chr4.4:33230840-33230859 MS.gene052367:CDS 50.0%
GCTCTTTACGTGAGAGAGTG+TGG + chr4.4:33229464-33229483 None:intergenic 50.0%
GGAGATTGCTGCATCAGAAG+AGG - chr4.4:33231195-33231214 MS.gene052367:CDS 50.0%
GGAGATTGCTGCATCTGAAG+AGG - chr4.4:33231165-33231184 MS.gene052367:CDS 50.0%
GTTTGGTCAGCAATCTCCAC+AGG + chr4.4:33231223-33231242 None:intergenic 50.0%
TATTGCTCCTGAGACTGCTG+TGG - chr4.4:33231471-33231490 MS.gene052367:CDS 50.0%
TCATCCCCACAAGCATCATC+AGG + chr4.4:33231391-33231410 None:intergenic 50.0%
TCTTCTCCACTCCCTGCATT+TGG + chr4.4:33232116-33232135 None:intergenic 50.0%
TGATGCAGAGGATGTGTTGC+AGG - chr4.4:33230822-33230841 MS.gene052367:CDS 50.0%
TGATGTCCAAATGCAGGGAG+TGG - chr4.4:33232107-33232126 MS.gene052367:CDS 50.0%
TGCATCAGAAGAGGTTCCTG+TGG - chr4.4:33231204-33231223 MS.gene052367:CDS 50.0%
TTCTGACTGAGCTGGGCAAA+GGG + chr4.4:33231911-33231930 None:intergenic 50.0%
TTTCTGACTGAGCTGGGCAA+AGG + chr4.4:33231912-33231931 None:intergenic 50.0%
! ACTACCAACAGCAGGAGTAC+CGG + chr4.4:33230211-33230230 None:intergenic 50.0%
! CACTCTACCTTCTCTGGTTC+AGG + chr4.4:33231562-33231581 None:intergenic 50.0%
! CCAAAGGAAGGTGGTGATGT+TGG - chr4.4:33230021-33230040 MS.gene052367:CDS 50.0%
! CTAGCTCTTGTCCTACTGCT+AGG + chr4.4:33230363-33230382 None:intergenic 50.0%
! GGTACCTGATGATGCTTGTG+GGG - chr4.4:33231384-33231403 MS.gene052367:CDS 50.0%
! GTGGTACCTGATGATGCTTG+TGG - chr4.4:33231382-33231401 MS.gene052367:CDS 50.0%
!! CTGCTGTTGGTAGTAGGAGA+AGG - chr4.4:33230217-33230236 MS.gene052367:CDS 50.0%
!! GTACTCCTGCTGTTGGTAGT+AGG - chr4.4:33230211-33230230 MS.gene052367:CDS 50.0%
!! GTTTCTACAAGGGTTAGCCG+TGG - chr4.4:33230123-33230142 MS.gene052367:CDS 50.0%
!! TGTTGCTGGCTTGTCTCTTG+AGG - chr4.4:33231303-33231322 MS.gene052367:CDS 50.0%
AGCGTCAGCCATGGCAACAT+TGG + chr4.4:33229529-33229548 None:intergenic 55.0%
AGGAGGTCCGTGAGATTGGT+GGG - chr4.4:33230447-33230466 MS.gene052367:CDS 55.0%
AGGATCTGAGCAGCCTGAAC+AGG - chr4.4:33231075-33231094 MS.gene052367:CDS 55.0%
CTACTGCTAGGAGCTACAGC+AGG + chr4.4:33230351-33230370 None:intergenic 55.0%
CTGCTGTAGCTCCTAGCAGT+AGG - chr4.4:33230349-33230368 MS.gene052367:CDS 55.0%
GAGACTGCTGTGGTGCCTAA+TGG - chr4.4:33231481-33231500 MS.gene052367:CDS 55.0%
GCTCTTCCCCACCAATCTCA+CGG + chr4.4:33230457-33230476 None:intergenic 55.0%
GCTGTTCGTGGTTGAACAGC+TGG + chr4.4:33230051-33230070 None:intergenic 55.0%
GTAGAGGCGGAGTTGCTGAA+GGG - chr4.4:33230148-33230167 MS.gene052367:CDS 55.0%
TAGAGGCGGAGTTGCTGAAG+GGG - chr4.4:33230149-33230168 MS.gene052367:CDS 55.0%
TCTGACTGAGCTGGGCAAAG+GGG + chr4.4:33231910-33231929 None:intergenic 55.0%
TTAGGCACCACAGCAGTCTC+AGG + chr4.4:33231481-33231500 None:intergenic 55.0%
! AGAAGGCATACAGCACCAGG+AGG - chr4.4:33230430-33230449 MS.gene052367:CDS 55.0%
! GATGAGTTTGGCGGACACTG+AGG - chr4.4:33230485-33230504 MS.gene052367:CDS 55.0%
! TGCAGAAGGCATACAGCACC+AGG - chr4.4:33230427-33230446 MS.gene052367:CDS 55.0%
! TTTGGCGGACACTGAGGACA+CGG - chr4.4:33230491-33230510 MS.gene052367:CDS 55.0%
!! TCTACAAGGGTTAGCCGTGG+TGG - chr4.4:33230126-33230145 MS.gene052367:CDS 55.0%
CAACTCCGCCTCTACCACCA+CGG + chr4.4:33230143-33230162 None:intergenic 60.0%
CACCAATCTCACGGACCTCC+TGG + chr4.4:33230448-33230467 None:intergenic 60.0%
CACCAGGAGGTCCGTGAGAT+TGG - chr4.4:33230443-33230462 MS.gene052367:CDS 60.0%
CAGGAGGTCCGTGAGATTGG+TGG - chr4.4:33230446-33230465 MS.gene052367:CDS 60.0%
GGAGGTCCGTGAGATTGGTG+GGG - chr4.4:33230448-33230467 MS.gene052367:CDS 60.0%
GGTAGAGGCGGAGTTGCTGA+AGG - chr4.4:33230147-33230166 MS.gene052367:CDS 60.0%
GTTAGCCGTGGTGGTAGAGG+CGG - chr4.4:33230135-33230154 MS.gene052367:CDS 60.0%
!! AGCTGAGAGAGCGTCAGCCA+TGG + chr4.4:33229538-33229557 None:intergenic 60.0%
!! AGGGTTAGCCGTGGTGGTAG+AGG - chr4.4:33230132-33230151 MS.gene052367:CDS 60.0%
GCTGCCGGTACTCCTGCTGT+TGG - chr4.4:33230204-33230223 MS.gene052367:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 33229453 33232182 33229453 ID=MS.gene052367
chr4.4 mRNA 33229453 33232182 33229453 ID=MS.gene052367.t1;Parent=MS.gene052367
chr4.4 exon 33232069 33232182 33232069 ID=MS.gene052367.t1.exon1;Parent=MS.gene052367.t1
chr4.4 CDS 33232069 33232182 33232069 ID=cds.MS.gene052367.t1;Parent=MS.gene052367.t1
chr4.4 exon 33231044 33231641 33231044 ID=MS.gene052367.t1.exon2;Parent=MS.gene052367.t1
chr4.4 CDS 33231044 33231641 33231044 ID=cds.MS.gene052367.t1;Parent=MS.gene052367.t1
chr4.4 exon 33230677 33230937 33230677 ID=MS.gene052367.t1.exon3;Parent=MS.gene052367.t1
chr4.4 CDS 33230677 33230937 33230677 ID=cds.MS.gene052367.t1;Parent=MS.gene052367.t1
chr4.4 exon 33229453 33230558 33229453 ID=MS.gene052367.t1.exon4;Parent=MS.gene052367.t1
chr4.4 CDS 33229453 33230558 33229453 ID=cds.MS.gene052367.t1;Parent=MS.gene052367.t1
Gene Sequence

>MS.gene052367

ATGGATTTCCACACTCTCTCACGTAAAGAGCTTCAAGCACTTTCCAAGATGAACAAGATTCCTGCTAATATCACCAATGTTGCCATGGCTGACGCTCTCTCAGCTCTTCCTCATGTAAATCTTTCTCCATTTCTTGATTTAGTTCAGTTCTTTATTTTTTAATTTGGAATCGTTGAAATATCATTGTGATGTTAATTAATTCATGTAATTTGTTCATGTTGTTTAGATTCAGATTTTATTTTTTCAATTTGAAGTATATTAAGTCGATTAGGTTTTTCATTTTAGGGGTTTTCAGTTCGGAGTTTGATTTTTATGATCTTGACTGGATTGGATAAGTTGTTGAAATGTAATTGATTTATTCTTATGCTATCAATTGTTGAAACTTGAAACTGTATTGTACTGTATTGTATTGTATTGTATTGATTCCATTGAAACTGTATTGTATTGTATTGATTCCATGTTTCATTAGATTTGTAAAATTGGAAAAGTTTTTTTTTTTTTTTTAAAATTAGATTTTTGATTTGATTTGAACTGATTGTAGGTTGAAGGATTGGATGAAATTTTGAATCCAAAGGAAGGTGGTGATGTTGGTACACCAGCTGTTCAACCACGAACAGCTCGTAAAACTACGACTCAAAGGAAACCGGTGAAAGAAGCTGAAAGCTCTAAGGTTTCTACAAGGGTTAGCCGTGGTGGTAGAGGCGGAGTTGCTGAAGGGGAAGTTGAGCAAGAGAACAAAGATGCTAATGTAGCTGCCGGTACTCCTGCTGTTGGTAGTAGGAGAAGGGTTCCTGCAGTTTCTACTCGCAGAAAGAAGGAAGTGATTGTGATAGAAGATGATGATGATGTTGATAAGAATGAGGTTCAAGAAAAGGCTATGAATGTGGCTAAAACTCCTGCTGTAGCTCCTAGCAGTAGGACAAGAGCTAGTCGTTCGGTTCGGAACAAAACTGAGATCTCTGATGAAACTTCAGTGCAGAAGGCATACAGCACCAGGAGGTCCGTGAGATTGGTGGGGAAGAGCTTGTCAAAGATGAGTTTGGCGGACACTGAGGACACGGAATCAACCAAGAATGATGATGTTTCTGAAGAAATGAGTGTCTCCCAGAATGAAGGGGGCTCAATTGAGACTGAAAACGGTATGCTAGATCTCATTATATTTAATTATTGTGAATTATTTTTGCTTATTTACTTGTGTTTGAGTCATGTATGATTTTAATCAACAATGAAATTGTTTATCTGCAGTGACTAGTTCGCAGACAGAATCAAATGTGGTTTCTCAGAACACTGATGAAGTGGAAGTTTCCTCTCTAAACAAAGCCGACTGTGAAAGCCAGTCACATGATTCTGGTTCAGAAGTGAAATCAACTGATGCAGAGGATGTGTTGCAGGCTGAACCAAAAGAAGAGGGTTCAGAGGTTGTCAATGATGTGGAGGTTTCACATGAGGACCCAAGTTTAAATCTGCAAGACAGTTTTGAGACATGCGCTGATTCAAATGAAGCAGGTTTGTTTTGCAATATGCTTGTGGTTCTTAACTATTGCTATTAATTTATTAGCATTCACTGATAGTTTGTTTTTGTTAAATGTTCACTAATCTGAACTTGATGTTGATCATTTTACAGGATCTGAGCAGCCTGAACAGGAGAAAACTTGTGATTCTGCTGAAATTGAAAATAAGGAATGCTTTGGAGCTGAGCAAGACCAAGCTATGGAGATTGCTGCATCTGAAGAGGTTTCTGTGGAGATTGCTGCATCAGAAGAGGTTCCTGTGGAGATTGCTGACCAAACTATTGCTTCTTTGACTGTTGCTGAACCTGAAGATGCTTTTGTGGATGTTCCTAACCAAGATGTTGCTGGCTTGTCTCTTGAGGCATCTGAAGAAGCTTATAAGGAGATTGCTGACCCAGTTATTGCCCCTTTGAATGTTGTGGTACCTGATGATGCTTGTGGGGATGATCTTGACCAAGATGTTGCTGATATGTCTGTTGTGTTATCTGAAGAGATTACTCAGCATGCTATTGCTCCTGAGACTGCTGTGGTGCCTAATGGAGCTATAGAGACTTCTTCAGAGGAGCATCAAGTAGAAGAAGAAGAAGTATTTGAACCTGAACCAGAGAAGGTAGAGTGTGTATCTTCGGCTATTCTAGTTGAAAAAGATGGAACTTCTGGTGACTCTGGAGCTGAAAATGAGGTCTGCATCCAATCCTTTGAAGACAAAAAAGAAAGCAACGGAGTTGAAGATGTCATTCTACAACTCTCAATGTTGGATGTAGCTGCAAAGAAAGAAGAAGATCAGAAGGATACTTCTGAGAAACAGGAAGCTGAAGCACAAACCAATGAATCTGAGGAACATGCAGTAGAAGAAGACACTGAGTTTGATGAGGTAGCTCATATCAATGATCAGAAAACTAGTGATATAGAGTCAATGGTTTCTGAGCAGATAAATGGAGAACCCCTTTGCCCAGCTCAGTCAGAAATCAAGGATATTGCCAATGAAATTCAAGCAGTTCCTAGTATTGAGAGTGGTACTGGCAATCCTAATACGATGAAGGAAAACTCGAAAACCATTGATTTTCAGAAAGCTAGTTTGCGGGTTCTCAAGAAGTTGGTGAAGGAGAAGTTAGCGGAAAAAACAAACATGATTGATAATGATGATGTCCAAATGCAGGGAGTGGAGAAGAAAAGAACTGCACTGCAAGCACTGCCACAGAATCAACTGGCTGAGTAA

Protein sequence

>MS.gene052367.t1

MDFHTLSRKELQALSKMNKIPANITNVAMADALSALPHVEGLDEILNPKEGGDVGTPAVQPRTARKTTTQRKPVKEAESSKVSTRVSRGGRGGVAEGEVEQENKDANVAAGTPAVGSRRRVPAVSTRRKKEVIVIEDDDDVDKNEVQEKAMNVAKTPAVAPSSRTRASRSVRNKTEISDETSVQKAYSTRRSVRLVGKSLSKMSLADTEDTESTKNDDVSEEMSVSQNEGGSIETENVTSSQTESNVVSQNTDEVEVSSLNKADCESQSHDSGSEVKSTDAEDVLQAEPKEEGSEVVNDVEVSHEDPSLNLQDSFETCADSNEAGSEQPEQEKTCDSAEIENKECFGAEQDQAMEIAASEEVSVEIAASEEVPVEIADQTIASLTVAEPEDAFVDVPNQDVAGLSLEASEEAYKEIADPVIAPLNVVVPDDACGDDLDQDVADMSVVLSEEITQHAIAPETAVVPNGAIETSSEEHQVEEEEVFEPEPEKVECVSSAILVEKDGTSGDSGAENEVCIQSFEDKKESNGVEDVILQLSMLDVAAKKEEDQKDTSEKQEAEAQTNESEEHAVEEDTEFDEVAHINDQKTSDIESMVSEQINGEPLCPAQSEIKDIANEIQAVPSIESGTGNPNTMKENSKTIDFQKASLRVLKKLVKEKLAEKTNMIDNDDVQMQGVEKKRTALQALPQNQLAE