Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072254.t1 | XP_003627005.1 | 99.9 | 832 | 1 | 0 | 1 | 832 | 1 | 832 | 0.00E+00 | 1682.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072254.t1 | Q9ZU11 | 83.8 | 838 | 126 | 5 | 1 | 832 | 3 | 836 | 0.0e+00 | 1423.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072254.t1 | G7LFY5 | 99.9 | 832 | 1 | 0 | 1 | 832 | 1 | 832 | 0.0e+00 | 1682.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene072254.t1 | TF | HB-HD-ZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40724 | MS.gene072254 | PPI |
| MS.gene031245 | MS.gene072254 | PPI |
| MS.gene072254 | MS.gene40278 | PPI |
| MS.gene072254 | MS.gene014625 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072254.t1 | MTR_8g013980 | 99.880 | 832 | 1 | 0 | 1 | 832 | 1 | 832 | 0.0 | 1732 |
| MS.gene072254.t1 | MTR_2g101190 | 88.769 | 837 | 88 | 4 | 1 | 832 | 1 | 836 | 0.0 | 1558 |
| MS.gene072254.t1 | MTR_3g109800 | 81.340 | 836 | 144 | 5 | 2 | 832 | 7 | 835 | 0.0 | 1436 |
| MS.gene072254.t1 | MTR_3g109800 | 81.218 | 788 | 136 | 5 | 2 | 784 | 7 | 787 | 0.0 | 1340 |
| MS.gene072254.t1 | MTR_3g109800 | 80.939 | 703 | 124 | 4 | 2 | 699 | 7 | 704 | 0.0 | 1197 |
| MS.gene072254.t1 | MTR_2g030130 | 66.187 | 834 | 264 | 9 | 11 | 832 | 9 | 836 | 0.0 | 1149 |
| MS.gene072254.t1 | MTR_4g058970 | 64.516 | 837 | 275 | 10 | 7 | 832 | 21 | 846 | 0.0 | 1110 |
| MS.gene072254.t1 | MTR_2g094520 | 60.072 | 839 | 306 | 11 | 8 | 832 | 16 | 839 | 0.0 | 1040 |
| MS.gene072254.t1 | MTR_3g109800 | 79.362 | 596 | 120 | 2 | 238 | 832 | 1 | 594 | 0.0 | 1014 |
| MS.gene072254.t1 | MTR_8g432540 | 21.912 | 502 | 299 | 17 | 195 | 667 | 369 | 806 | 5.24e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072254.t1 | AT1G52150 | 83.771 | 838 | 126 | 5 | 1 | 832 | 3 | 836 | 0.0 | 1470 |
| MS.gene072254.t1 | AT1G52150 | 83.671 | 839 | 126 | 6 | 1 | 832 | 3 | 837 | 0.0 | 1466 |
| MS.gene072254.t1 | AT1G52150 | 83.291 | 790 | 122 | 5 | 1 | 784 | 3 | 788 | 0.0 | 1370 |
| MS.gene072254.t1 | AT4G32880 | 77.316 | 842 | 172 | 9 | 1 | 832 | 1 | 833 | 0.0 | 1357 |
| MS.gene072254.t1 | AT2G34710 | 65.197 | 839 | 268 | 13 | 11 | 832 | 21 | 852 | 0.0 | 1106 |
| MS.gene072254.t1 | AT1G30490 | 63.412 | 850 | 278 | 14 | 1 | 832 | 7 | 841 | 0.0 | 1083 |
| MS.gene072254.t1 | AT5G60690 | 63.214 | 840 | 281 | 10 | 7 | 832 | 17 | 842 | 0.0 | 1081 |
| MS.gene072254.t1 | AT5G32670 | 63.514 | 74 | 27 | 0 | 281 | 354 | 37 | 110 | 9.86e-25 | 102 |
| MS.gene072254.t1 | AT4G00730 | 23.333 | 540 | 309 | 19 | 15 | 475 | 137 | 650 | 3.51e-19 | 93.2 |
| MS.gene072254.t1 | AT4G04890 | 23.413 | 504 | 286 | 20 | 196 | 668 | 302 | 736 | 1.59e-17 | 87.8 |
| MS.gene072254.t1 | AT4G04890 | 23.413 | 504 | 286 | 20 | 196 | 668 | 302 | 736 | 1.59e-17 | 87.8 |
| MS.gene072254.t1 | AT1G05230 | 21.765 | 510 | 287 | 16 | 189 | 668 | 288 | 715 | 6.71e-13 | 73.2 |
| MS.gene072254.t1 | AT1G05230 | 21.569 | 510 | 290 | 16 | 189 | 668 | 288 | 717 | 3.18e-12 | 70.9 |
| MS.gene072254.t1 | AT1G05230 | 21.569 | 510 | 290 | 16 | 189 | 668 | 288 | 717 | 3.18e-12 | 70.9 |
| MS.gene072254.t1 | AT1G05230 | 21.569 | 510 | 290 | 16 | 189 | 668 | 288 | 717 | 3.18e-12 | 70.9 |
| MS.gene072254.t1 | AT1G05230 | 21.569 | 510 | 290 | 16 | 189 | 668 | 288 | 717 | 3.18e-12 | 70.9 |
| MS.gene072254.t1 | AT1G05230 | 21.569 | 510 | 290 | 16 | 189 | 668 | 288 | 717 | 3.18e-12 | 70.9 |
| MS.gene072254.t1 | AT1G05230 | 21.569 | 510 | 290 | 16 | 189 | 668 | 288 | 717 | 3.18e-12 | 70.9 |
| MS.gene072254.t1 | AT1G05230 | 21.569 | 510 | 290 | 16 | 189 | 668 | 288 | 717 | 3.18e-12 | 70.9 |
| MS.gene072254.t1 | AT1G05230 | 21.569 | 510 | 290 | 16 | 189 | 668 | 288 | 717 | 3.18e-12 | 70.9 |
| MS.gene072254.t1 | AT1G05230 | 21.569 | 510 | 290 | 16 | 189 | 668 | 288 | 717 | 3.18e-12 | 70.9 |
| MS.gene072254.t1 | AT1G05230 | 21.569 | 510 | 290 | 16 | 189 | 668 | 288 | 717 | 3.18e-12 | 70.9 |
| MS.gene072254.t1 | AT1G73360 | 28.287 | 251 | 135 | 10 | 15 | 237 | 35 | 268 | 7.04e-11 | 66.6 |
| MS.gene072254.t1 | AT3G61150 | 31.387 | 137 | 71 | 4 | 7 | 143 | 105 | 218 | 8.29e-11 | 66.2 |
Find 230 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAAGACAACAACTTATT+AGG | 0.174771 | 8.1:-83247286 | MS.gene072254:CDS |
| GCTACAAGGGCCAACTTTAA+TGG | 0.244448 | 8.1:+83243293 | None:intergenic |
| TGGCACCTGCTCGCGACTTC+TGG | 0.256710 | 8.1:-83244946 | MS.gene072254:CDS |
| TTCATCACCTGACAAGTTAA+TGG | 0.269088 | 8.1:-83243969 | MS.gene072254:CDS |
| AGCAGAGGAAAGAGTCTTTC+AGG | 0.278587 | 8.1:-83246485 | MS.gene072254:CDS |
| TGTAGACCTGTTGGATAATC+TGG | 0.279910 | 8.1:+83240766 | None:intergenic |
| AGTGATAATGCTGGAAATTC+TGG | 0.282961 | 8.1:-83242302 | MS.gene072254:CDS |
| CTTCGAATTGAACTTGGTTT+AGG | 0.284511 | 8.1:+83247302 | None:intergenic |
| CTCCATCAGCAGCTTATTCA+TGG | 0.284981 | 8.1:+83246434 | None:intergenic |
| CGTATCATCCCTCTTGAATC+TGG | 0.289816 | 8.1:-83242495 | MS.gene072254:CDS |
| GTTGGCCCTTGTAGCTTAAC+AGG | 0.293248 | 8.1:-83243285 | MS.gene072254:CDS |
| ATTGGATCTGCAACAGTTAT+AGG | 0.295090 | 8.1:-83242073 | MS.gene072254:intron |
| CTGCAGGACTTGCATCCCTT+GGG | 0.308926 | 8.1:+83245801 | None:intergenic |
| AACCAAGACAAATCAAAGTT+TGG | 0.310921 | 8.1:-83247238 | MS.gene072254:CDS |
| AATAAGCACTTAATGGATAA+TGG | 0.320902 | 8.1:-83247386 | MS.gene072254:CDS |
| GTGCTTATTACCATCCTTGC+AGG | 0.321255 | 8.1:+83247400 | None:intergenic |
| GGATGGTAATAAGCACTTAA+TGG | 0.322988 | 8.1:-83247393 | MS.gene072254:CDS |
| TGACTCACAACTCGTGTCTT+TGG | 0.332611 | 8.1:+83245865 | None:intergenic |
| TGAGCAAGGGTTTGTGCCTC+AGG | 0.333658 | 8.1:+83242095 | None:intergenic |
| TCGAAGACAACAACTTATTA+GGG | 0.339115 | 8.1:-83247285 | MS.gene072254:CDS |
| ATACCTTCATTCCAGGCATT+TGG | 0.342067 | 8.1:+83245592 | None:intergenic |
| CTCCTTCACAAGGTCTTATC+AGG | 0.342292 | 8.1:+83244640 | None:intergenic |
| CCTGCAGGACTTGCATCCCT+TGG | 0.343323 | 8.1:+83245800 | None:intergenic |
| TATAGTGGACGCAGTACTTC+TGG | 0.345373 | 8.1:+83244480 | None:intergenic |
| TCTCTGGCCATCATTTCTTC+AGG | 0.345556 | 8.1:+83243071 | None:intergenic |
| TACAGGCTTTACGTCATCTA+AGG | 0.346410 | 8.1:-83244249 | MS.gene072254:intron |
| TCTTGAGATACCTTCATTCC+AGG | 0.353242 | 8.1:+83245585 | None:intergenic |
| AAGTTTGGTTTCAGAATAGA+AGG | 0.353326 | 8.1:-83247223 | MS.gene072254:intron |
| CAAGGCATCAATGCTATTAC+AGG | 0.357953 | 8.1:-83243888 | MS.gene072254:intron |
| GCCCTTGACATTGGCCCTAC+TGG | 0.365743 | 8.1:-83242338 | MS.gene072254:CDS |
| TCTGCTTTATGTTTGTGAAC+TGG | 0.371665 | 8.1:-83240477 | MS.gene072254:CDS |
| CTGTGTAAGCATCCATATTA+TGG | 0.372634 | 8.1:+83243322 | None:intergenic |
| CTGAATCTTTCCTTTGGCAA+TGG | 0.387020 | 8.1:-83243944 | MS.gene072254:CDS |
| CATCCACATTGTTGATCATA+TGG | 0.387385 | 8.1:-83244607 | MS.gene072254:CDS |
| TCAGGTTGCAAGGTGTGAAT+AGG | 0.391944 | 8.1:-83246467 | MS.gene072254:CDS |
| GGATCTCGCGTAGGAAATTA+CGG | 0.393856 | 8.1:-83243264 | MS.gene072254:CDS |
| AGAATGGGCAGACCATAATA+TGG | 0.399984 | 8.1:-83243334 | MS.gene072254:CDS |
| AACCAAACTTTGATTTGTCT+TGG | 0.401297 | 8.1:+83247236 | None:intergenic |
| ATGGGTCTGAATCTTTCCTT+TGG | 0.411939 | 8.1:-83243950 | MS.gene072254:CDS |
| TCCTAAAAGATCGTCCTTTG+TGG | 0.414014 | 8.1:-83245161 | MS.gene072254:CDS |
| CCATCATTTCTTCAGGAGAA+TGG | 0.415643 | 8.1:+83243078 | None:intergenic |
| GCATGTGAACTCAGATTAGA+AGG | 0.416254 | 8.1:+83242143 | None:intergenic |
| CTAAGTGCCCGCAGAGCTGC+TGG | 0.418507 | 8.1:+83244175 | None:intergenic |
| GAATTTCTTTCAAAGGCTAC+TGG | 0.419741 | 8.1:-83245633 | MS.gene072254:CDS |
| ATACTAACCGGCTCAATCTC+TGG | 0.425078 | 8.1:+83244152 | None:intergenic |
| ATATAATACTGCGAACATAT+TGG | 0.427160 | 8.1:+83242198 | None:intergenic |
| CATTGTTGATCATATGGACT+TGG | 0.428519 | 8.1:-83244601 | MS.gene072254:CDS |
| GTTTCTCAGCCCAATGTCAC+TGG | 0.430041 | 8.1:-83244211 | MS.gene072254:CDS |
| TTCAGACCCATTAACTTGTC+AGG | 0.430051 | 8.1:+83243962 | None:intergenic |
| TCAAGAGCTTCAACCTGCTC+AGG | 0.430316 | 8.1:+83247344 | None:intergenic |
| CCAAGGGATGCAAGTCCTGC+AGG | 0.431428 | 8.1:-83245800 | MS.gene072254:CDS |
| AGGCACAAACCCTTGCTCAT+TGG | 0.433054 | 8.1:-83242091 | MS.gene072254:CDS |
| TCATCACCTGACAAGTTAAT+GGG | 0.437200 | 8.1:-83243968 | MS.gene072254:CDS |
| CTCAATGGATTTACTGATGA+AGG | 0.445576 | 8.1:-83244043 | MS.gene072254:CDS |
| CATCATTTCTTCAGGAGAAT+GGG | 0.448210 | 8.1:+83243079 | None:intergenic |
| TATGTTCACGCAGGAACCTT+AGG | 0.448822 | 8.1:+83243361 | None:intergenic |
| AGCAAGAGCTTGTGGTCTAG+TGG | 0.450671 | 8.1:-83245294 | MS.gene072254:CDS |
| TGTGGCACAGGAGGCATGCT+TGG | 0.453662 | 8.1:+83244696 | None:intergenic |
| TCAGCAAATGAAGCATCAAT+TGG | 0.455580 | 8.1:+83242546 | None:intergenic |
| TTCACTTTCTCAAACCAGGC+AGG | 0.455998 | 8.1:-83240888 | MS.gene072254:CDS |
| TGCTAAAGTTTCTTCTGCAA+TGG | 0.458146 | 8.1:+83245656 | None:intergenic |
| CTTCCCCACCCAGTGACATT+GGG | 0.458697 | 8.1:+83244202 | None:intergenic |
| AAGACGACCAGCAGCTCTGC+GGG | 0.458787 | 8.1:-83244182 | MS.gene072254:CDS |
| CCAGCATGTCAAGCCCTGCC+TGG | 0.459209 | 8.1:+83240874 | None:intergenic |
| TATTGAGCTGCTTTATATGC+AGG | 0.461758 | 8.1:-83245079 | MS.gene072254:intron |
| GAGAAAATATTTGATGATAA+TGG | 0.466405 | 8.1:-83240816 | MS.gene072254:CDS |
| CGAAATCCAGAGGGTAGAAG+TGG | 0.468647 | 8.1:+83242516 | None:intergenic |
| CCAGGCAGGGCTTGACATGC+TGG | 0.469882 | 8.1:-83240874 | MS.gene072254:CDS |
| TCTTCCCCACCCAGTGACAT+TGG | 0.470531 | 8.1:+83244201 | None:intergenic |
| TGCATTACAAGATATAAGTC+TGG | 0.474357 | 8.1:-83240838 | MS.gene072254:CDS |
| CGAGATCCTGTTAAGCTACA+AGG | 0.476441 | 8.1:+83243279 | None:intergenic |
| GTCTTCTGAGCCAGCACCAT+CGG | 0.476703 | 8.1:+83244450 | None:intergenic |
| TTTAGCAGAATTTCTTTCAA+AGG | 0.476915 | 8.1:-83245640 | MS.gene072254:CDS |
| GCTGGCTCAGAAGACTACTA+TGG | 0.477145 | 8.1:-83244442 | MS.gene072254:CDS |
| CAGCCCAATGTCACTGGGTG+GGG | 0.478064 | 8.1:-83244205 | MS.gene072254:CDS |
| GGTTTCAATGAGGCACTCAA+TGG | 0.478467 | 8.1:-83244058 | MS.gene072254:CDS |
| TGTATTATGTTGCACTCTAA+AGG | 0.481143 | 8.1:-83241311 | MS.gene072254:intron |
| GCAAGATCAAGAGTGCGATT+AGG | 0.482451 | 8.1:+83242365 | None:intergenic |
| TGCAGGACTTGCATCCCTTG+GGG | 0.482836 | 8.1:+83245802 | None:intergenic |
| GTTGAGTGGGTCCAAATGCC+TGG | 0.484697 | 8.1:-83245603 | MS.gene072254:CDS |
| TGTTGTCTTCGAATTGAACT+TGG | 0.487679 | 8.1:+83247296 | None:intergenic |
| CAGCATTATCACTTGATGCT+CGG | 0.488270 | 8.1:+83242312 | None:intergenic |
| ACAGCTGCTGCCATTAAAGT+TGG | 0.491933 | 8.1:-83243303 | MS.gene072254:CDS |
| AAATGATAGGTTGCAGAAGC+AGG | 0.492355 | 8.1:-83246409 | MS.gene072254:CDS |
| ATTCCAATGGAATCCGGACC+AGG | 0.494411 | 8.1:+83245350 | None:intergenic |
| CTTGCATCCGCCCTTGACAT+TGG | 0.495118 | 8.1:-83242347 | MS.gene072254:CDS |
| GCTATTTCTCATGGTTGCAC+TGG | 0.496228 | 8.1:-83245323 | MS.gene072254:CDS |
| GGTTCAATATTAGAAAGAAT+AGG | 0.496315 | 8.1:+83247257 | None:intergenic |
| TTGCAACAGAAACAATTCTC+TGG | 0.496348 | 8.1:+83243055 | None:intergenic |
| TCTAATCTGAGTTCACATGC+TGG | 0.496973 | 8.1:-83242140 | MS.gene072254:CDS |
| CATATGAGAGAGCTGTTGCT+TGG | 0.497242 | 8.1:-83240534 | MS.gene072254:CDS |
| AAAGTGCTAACGCTACCCTT+TGG | 0.500197 | 8.1:+83242168 | None:intergenic |
| GTAGACCTGTTGGATAATCT+GGG | 0.502790 | 8.1:+83240767 | None:intergenic |
| TACTGGAACCGCTGTTGAGT+GGG | 0.504776 | 8.1:-83245616 | MS.gene072254:CDS |
| TTGATGCTCGGTTTCCAGTA+GGG | 0.507932 | 8.1:+83242324 | None:intergenic |
| ATATGAATCACCGATGGTGC+TGG | 0.508312 | 8.1:-83244460 | MS.gene072254:CDS |
| TACACTTCTGTTGTAGAAGA+TGG | 0.508557 | 8.1:-83244914 | MS.gene072254:CDS |
| ATCAATCACACTCACCCTGC+AGG | 0.508922 | 8.1:+83245785 | None:intergenic |
| GGAATCGTCGCTATTTCTCA+TGG | 0.511365 | 8.1:-83245332 | MS.gene072254:CDS |
| ATCAAGAGTGCGATTAGGAC+TGG | 0.512797 | 8.1:+83242370 | None:intergenic |
| CTAATCTGAGTTCACATGCT+GGG | 0.513411 | 8.1:-83242139 | MS.gene072254:CDS |
| TGCCTCCGGCCATTCTCCTA+AGG | 0.514854 | 8.1:-83243377 | MS.gene072254:CDS |
| CCATTCTCCTGAAGAAATGA+TGG | 0.515783 | 8.1:-83243078 | MS.gene072254:CDS |
| GGTCCAAATGCCTGGAATGA+AGG | 0.515906 | 8.1:-83245595 | MS.gene072254:intron |
| TTCTACTACTATGGCCTGCA+AGG | 0.516996 | 8.1:-83247414 | None:intergenic |
| ACCATCGGTGATTCATATAG+TGG | 0.517896 | 8.1:+83244465 | None:intergenic |
| TGGTATTTGTCTCTCGAGCA+TGG | 0.517946 | 8.1:-83240569 | MS.gene072254:CDS |
| GCGTGAACATAGATCAGAAT+GGG | 0.519247 | 8.1:-83243349 | MS.gene072254:CDS |
| CTTGATGCTCGGTTTCCAGT+AGG | 0.520139 | 8.1:+83242323 | None:intergenic |
| GCAGAAGCAGGTGTCTCACC+TGG | 0.520783 | 8.1:-83246397 | MS.gene072254:CDS |
| TGATAATGGACAGCCTGGTC+CGG | 0.521077 | 8.1:-83245363 | MS.gene072254:intron |
| TTCCAGTAGGGCCAATGTCA+AGG | 0.522319 | 8.1:+83242336 | None:intergenic |
| TGTTGATCATATGGACTTGG+AGG | 0.525009 | 8.1:-83244598 | MS.gene072254:intron |
| ACTACTATGGCCTGCAAGGA+TGG | 0.525573 | 8.1:-83247410 | None:intergenic |
| CAGCCTGGTCCGGATTCCAT+TGG | 0.526878 | 8.1:-83245353 | MS.gene072254:CDS |
| ATGATCAACAATGTGGATGA+TGG | 0.527724 | 8.1:+83244611 | None:intergenic |
| TGCTGATGGAGGAAAATGAT+AGG | 0.530081 | 8.1:-83246422 | MS.gene072254:CDS |
| TCTCACCTGGTGTATGAGAA+TGG | 0.530759 | 8.1:-83246384 | MS.gene072254:CDS |
| GCGACGATTCCAATGGAATC+CGG | 0.530819 | 8.1:+83245344 | None:intergenic |
| GCTCAATAGTGTGTGCTAGC+GGG | 0.533244 | 8.1:+83243226 | None:intergenic |
| TTGGTAGCTCTGCAGTGGAA+TGG | 0.533406 | 8.1:-83242610 | MS.gene072254:intron |
| GGAATGGATGAGAATGCTAT+TGG | 0.534330 | 8.1:-83242594 | MS.gene072254:CDS |
| GATGCCCCACTTCTACCCTC+TGG | 0.535941 | 8.1:-83242522 | MS.gene072254:CDS |
| AGCAGGTTGAAGCTCTTGAA+AGG | 0.536769 | 8.1:-83247340 | MS.gene072254:CDS |
| TTGGAAGTTATTAAGTTGGA+CGG | 0.536877 | 8.1:-83243107 | MS.gene072254:CDS |
| GATCTCGCGTAGGAAATTAC+GGG | 0.538410 | 8.1:-83243263 | MS.gene072254:CDS |
| TGCTCAATAGTGTGTGCTAG+CGG | 0.541880 | 8.1:+83243225 | None:intergenic |
| CGAGCATCAAGTGATAATGC+TGG | 0.543560 | 8.1:-83242311 | MS.gene072254:CDS |
| GCTCTAACAAAATGTGGCAC+AGG | 0.544412 | 8.1:+83244684 | None:intergenic |
| CGAGCAGGTGCCAATGTGGT+TGG | 0.545131 | 8.1:+83244956 | None:intergenic |
| TGAGTTCACATGCTGGGCTG+AGG | 0.546668 | 8.1:-83242133 | MS.gene072254:CDS |
| TCAGCCCAATGTCACTGGGT+GGG | 0.546882 | 8.1:-83244206 | MS.gene072254:CDS |
| CTGTAATAGCATTGATGCCT+TGG | 0.547972 | 8.1:+83243889 | None:intergenic |
| AGCAAATATAAGTTCTGCAC+AGG | 0.548261 | 8.1:+83242569 | None:intergenic |
| GCAGGACTTGCATCCCTTGG+GGG | 0.548645 | 8.1:+83245803 | None:intergenic |
| ACGCAGGAACCTTAGGAGAA+TGG | 0.552952 | 8.1:+83243368 | None:intergenic |
| AACAACCAGAAGTCGCGAGC+AGG | 0.555588 | 8.1:+83244941 | None:intergenic |
| ACAGCTCTCTCATATGAGAC+AGG | 0.555727 | 8.1:+83240541 | None:intergenic |
| TATTATATCATCAGTCCAAA+GGG | 0.557286 | 8.1:-83242183 | MS.gene072254:CDS |
| AATGTGCTCCCCACTGCTAA+CGG | 0.559787 | 8.1:-83245108 | MS.gene072254:CDS |
| CTCAGCCCAATGTCACTGGG+TGG | 0.560247 | 8.1:-83244207 | MS.gene072254:CDS |
| GGTATTTGTCTCTCGAGCAT+GGG | 0.561603 | 8.1:-83240568 | MS.gene072254:CDS |
| TGAGAGAGCTGTTGCTTGGA+AGG | 0.561628 | 8.1:-83240530 | MS.gene072254:CDS |
| AAAGAGTCTTTCAGGTTGCA+AGG | 0.562032 | 8.1:-83246477 | MS.gene072254:CDS |
| AGTACTTCTGGAACGCTCCA+TGG | 0.562310 | 8.1:+83244492 | None:intergenic |
| CTACTTAAATCTAATACTGA+AGG | 0.567758 | 8.1:-83241376 | MS.gene072254:CDS |
| AGGAACCTTAGGAGAATGGC+CGG | 0.568732 | 8.1:+83243372 | None:intergenic |
| CTGATAAGACCTTGTGAAGG+AGG | 0.568786 | 8.1:-83244639 | MS.gene072254:CDS |
| TTAGATGTAGAGAGAAGCAG+AGG | 0.568817 | 8.1:-83246500 | MS.gene072254:intron |
| GCAAGAGAATGTAGCATGCA+TGG | 0.572833 | 8.1:-83242225 | MS.gene072254:CDS |
| GAGCAAGGGTTTGTGCCTCA+GGG | 0.577463 | 8.1:+83242096 | None:intergenic |
| ATAGTTCCACCGTTAGCAGT+GGG | 0.580124 | 8.1:+83245099 | None:intergenic |
| GCAAGAGCTTGTGGTCTAGT+GGG | 0.580275 | 8.1:-83245293 | MS.gene072254:CDS |
| TCACTTTCTCAAACCAGGCA+GGG | 0.582033 | 8.1:-83240887 | MS.gene072254:CDS |
| CTACTGGAACCGCTGTTGAG+TGG | 0.586215 | 8.1:-83245617 | MS.gene072254:CDS |
| TAGTGGGACTAGAACCCACT+AGG | 0.586368 | 8.1:-83245277 | MS.gene072254:CDS |
| TCCAGTAGGGCCAATGTCAA+GGG | 0.587136 | 8.1:+83242337 | None:intergenic |
| TGATGAAGGATGGACAATGA+TGG | 0.587248 | 8.1:-83244029 | MS.gene072254:CDS |
| TTTCTCAGCCCAATGTCACT+GGG | 0.588485 | 8.1:-83244210 | MS.gene072254:CDS |
| CATGAATAAGCTGCTGATGG+AGG | 0.588751 | 8.1:-83246433 | MS.gene072254:CDS |
| GTATTATATCATCAGTCCAA+AGG | 0.589604 | 8.1:-83242184 | MS.gene072254:CDS |
| CACTTAGCCAGAGATTGAGC+CGG | 0.590279 | 8.1:-83244159 | MS.gene072254:intron |
| TTGTAGATGCTACTTAGGCG+TGG | 0.590476 | 8.1:-83241401 | MS.gene072254:intron |
| AGTGTTCACTTTCTCAAACC+AGG | 0.592651 | 8.1:-83240892 | MS.gene072254:CDS |
| ATGGATTTACTGATGAAGGA+TGG | 0.595578 | 8.1:-83244039 | MS.gene072254:CDS |
| TGTACGTTATACACCTGAGC+AGG | 0.597312 | 8.1:-83247357 | MS.gene072254:CDS |
| TGTTGCAGATCCAATGAGCA+AGG | 0.597888 | 8.1:+83242081 | None:intergenic |
| GCTTTATGCACCAACCACAT+TGG | 0.599013 | 8.1:-83244966 | MS.gene072254:CDS |
| AGAAATAGCGACGATTCCAA+TGG | 0.599267 | 8.1:+83245337 | None:intergenic |
| AGCCATGAATAAGCTGCTGA+TGG | 0.601468 | 8.1:-83246436 | MS.gene072254:CDS |
| ATAAGACCTTGTGAAGGAGG+TGG | 0.601925 | 8.1:-83244636 | MS.gene072254:CDS |
| TCTTTGCAGGGGTTTCAATG+AGG | 0.602278 | 8.1:-83244068 | MS.gene072254:intron |
| TCTGGACCACTTACCCTAGT+GGG | 0.608488 | 8.1:+83245263 | None:intergenic |
| AATAGTTCCACCGTTAGCAG+TGG | 0.609780 | 8.1:+83245098 | None:intergenic |
| CAAGGGATGCAAGTCCTGCA+GGG | 0.611498 | 8.1:-83245799 | MS.gene072254:intron |
| AACACAGCATTACTGACAGA+AGG | 0.611683 | 8.1:+83243917 | None:intergenic |
| CTAACAAAATGTGGCACAGG+AGG | 0.612984 | 8.1:+83244687 | None:intergenic |
| ATGTCTGCTCTAACAAAATG+TGG | 0.616648 | 8.1:+83244678 | None:intergenic |
| GGTGTCGCAGCAAGAGCTTG+TGG | 0.617510 | 8.1:-83245302 | MS.gene072254:CDS |
| GATGAAGGATGGACAATGAT+GGG | 0.617941 | 8.1:-83244028 | MS.gene072254:CDS |
| GAAATCCAGAGGGTAGAAGT+GGG | 0.626534 | 8.1:+83242517 | None:intergenic |
| AGAAGGAAATCCATTGCCAA+AGG | 0.629899 | 8.1:+83243934 | None:intergenic |
| TGCGTGAACATAGATCAGAA+TGG | 0.632509 | 8.1:-83243350 | MS.gene072254:CDS |
| AGCATCAGAGTGGTGCCACA+AGG | 0.633858 | 8.1:+83241333 | None:intergenic |
| GTTGCAGATCCAATGAGCAA+GGG | 0.634819 | 8.1:+83242082 | None:intergenic |
| AGACACGAGTTGTGAGTCAG+TGG | 0.635890 | 8.1:-83245861 | MS.gene072254:CDS |
| ATCTGGACCACTTACCCTAG+TGG | 0.637854 | 8.1:+83245262 | None:intergenic |
| GCTGGGCTGAGGTCACCGCT+AGG | 0.643168 | 8.1:-83242122 | MS.gene072254:CDS |
| GGTCTTATCAGGTACCCACT+AGG | 0.644022 | 8.1:+83244651 | None:intergenic |
| TAGACCTGTTGGATAATCTG+GGG | 0.644230 | 8.1:+83240768 | None:intergenic |
| GTGCTCCCCACTGCTAACGG+TGG | 0.644457 | 8.1:-83245105 | MS.gene072254:CDS |
| TGGACAATGATGGGCAATGA+CGG | 0.644598 | 8.1:-83244019 | MS.gene072254:CDS |
| GAAGACGACCAGCAGCTCTG+CGG | 0.647462 | 8.1:-83244183 | MS.gene072254:CDS |
| CATTGACAATATCAACAGCT+CGG | 0.648913 | 8.1:+83245127 | None:intergenic |
| GAGCAGACATGCTACCTAGT+GGG | 0.649479 | 8.1:-83244665 | MS.gene072254:CDS |
| GTCGCGAGCAGGTGCCAATG+TGG | 0.649892 | 8.1:+83244952 | None:intergenic |
| TAATGCTGTGTTATGTGCCA+AGG | 0.650005 | 8.1:-83243906 | MS.gene072254:CDS |
| ATGGAACCACCTCCTTCACA+AGG | 0.652482 | 8.1:+83244630 | None:intergenic |
| AATCTGTACTCAAGTCCTTG+TGG | 0.653586 | 8.1:-83241348 | MS.gene072254:CDS |
| GAGATCCTGTTAAGCTACAA+GGG | 0.654440 | 8.1:+83243280 | None:intergenic |
| AGCAAGGGTTTGTGCCTCAG+GGG | 0.654661 | 8.1:+83242097 | None:intergenic |
| TCCACTATATGAATCACCGA+TGG | 0.655585 | 8.1:-83244466 | MS.gene072254:CDS |
| AGCTTAACAGGATCTCGCGT+AGG | 0.658137 | 8.1:-83243273 | MS.gene072254:CDS |
| TGTGAGTCAGTGGTGACTAG+TGG | 0.658501 | 8.1:-83245851 | MS.gene072254:CDS |
| AGAGCAGACATGCTACCTAG+TGG | 0.663725 | 8.1:-83244666 | MS.gene072254:CDS |
| AATAGCCATTCTCATACACC+AGG | 0.665036 | 8.1:+83246379 | None:intergenic |
| AGGGATGATACGAAATCCAG+AGG | 0.676709 | 8.1:+83242506 | None:intergenic |
| GTGTGCCTTAGATCTGTGAG+AGG | 0.677270 | 8.1:-83244743 | MS.gene072254:intron |
| ATCTCGCGTAGGAAATTACG+GGG | 0.678836 | 8.1:-83243262 | MS.gene072254:CDS |
| AGCACACACTATTGAGCACG+AGG | 0.681418 | 8.1:-83243220 | MS.gene072254:CDS |
| GGCTCAGAAGACTACTATGG+CGG | 0.682781 | 8.1:-83244439 | MS.gene072254:intron |
| TACCTGATAAGACCTTGTGA+AGG | 0.684274 | 8.1:-83244642 | MS.gene072254:CDS |
| TGTAGAAGATGGCAGCCTAG+TGG | 0.684422 | 8.1:-83244903 | MS.gene072254:intron |
| AGTAGGGCCAATGTCAAGGG+CGG | 0.685148 | 8.1:+83242340 | None:intergenic |
| GGGATGATACGAAATCCAGA+GGG | 0.685666 | 8.1:+83242507 | None:intergenic |
| AGTCCATATGATCAACAATG+TGG | 0.687782 | 8.1:+83244604 | None:intergenic |
| CGGCAATCACGAAACCACAA+AGG | 0.688045 | 8.1:+83245147 | None:intergenic |
| AGACCTGTTGGATAATCTGG+GGG | 0.690668 | 8.1:+83240769 | None:intergenic |
| AAATCCAGAGGGTAGAAGTG+GGG | 0.695513 | 8.1:+83242518 | None:intergenic |
| AGTGGGACTAGAACCCACTA+GGG | 0.698187 | 8.1:-83245276 | MS.gene072254:intron |
| ATTCTGATCTATGTTCACGC+AGG | 0.699759 | 8.1:+83243352 | None:intergenic |
| AACATAATACAGCATCAGAG+TGG | 0.704741 | 8.1:+83241323 | None:intergenic |
| TGTGCCTCAGGGGTACCTAG+CGG | 0.706731 | 8.1:+83242107 | None:intergenic |
| CATTTGGACCCACTCAACAG+CGG | 0.709948 | 8.1:+83245608 | None:intergenic |
| TGGTTTGAGAAAGTGAACAC+TGG | 0.711249 | 8.1:+83240894 | None:intergenic |
| TAGTTCCACCGTTAGCAGTG+GGG | 0.711322 | 8.1:+83245100 | None:intergenic |
| AACCTTAGGAGAATGGCCGG+AGG | 0.726815 | 8.1:+83243375 | None:intergenic |
| ACACACTATTGAGCACGAGG+AGG | 0.734761 | 8.1:-83243217 | MS.gene072254:intron |
| GTCACCGCTAGGTACCCCTG+AGG | 0.759127 | 8.1:-83242111 | MS.gene072254:CDS |
| TCTCGCGTAGGAAATTACGG+GGG | 0.824268 | 8.1:-83243261 | MS.gene072254:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 83240465 | 83247426 | 83240465 | ID=MS.gene072254 |
| chr8.1 | mRNA | 83240465 | 83247426 | 83240465 | ID=MS.gene072254.t1;Parent=MS.gene072254 |
| chr8.1 | exon | 83247224 | 83247426 | 83247224 | ID=MS.gene072254.t1.exon1;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83247224 | 83247426 | 83247224 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83246359 | 83246518 | 83246359 | ID=MS.gene072254.t1.exon2;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83246359 | 83246518 | 83246359 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83245800 | 83245891 | 83245800 | ID=MS.gene072254.t1.exon3;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83245800 | 83245891 | 83245800 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83245596 | 83245686 | 83245596 | ID=MS.gene072254.t1.exon4;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83245596 | 83245686 | 83245596 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83245277 | 83245372 | 83245277 | ID=MS.gene072254.t1.exon5;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83245277 | 83245372 | 83245277 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83245080 | 83245193 | 83245080 | ID=MS.gene072254.t1.exon6;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83245080 | 83245193 | 83245080 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83244904 | 83244987 | 83244904 | ID=MS.gene072254.t1.exon7;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83244904 | 83244987 | 83244904 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83244599 | 83244754 | 83244599 | ID=MS.gene072254.t1.exon8;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83244599 | 83244754 | 83244599 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83244440 | 83244514 | 83244440 | ID=MS.gene072254.t1.exon9;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83244440 | 83244514 | 83244440 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83244160 | 83244266 | 83244160 | ID=MS.gene072254.t1.exon10;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83244160 | 83244266 | 83244160 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83243889 | 83244081 | 83243889 | ID=MS.gene072254.t1.exon11;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83243889 | 83244081 | 83243889 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83243218 | 83243403 | 83243218 | ID=MS.gene072254.t1.exon12;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83243218 | 83243403 | 83243218 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83243055 | 83243132 | 83243055 | ID=MS.gene072254.t1.exon13;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83243055 | 83243132 | 83243055 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83242491 | 83242625 | 83242491 | ID=MS.gene072254.t1.exon14;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83242491 | 83242625 | 83242491 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83242074 | 83242399 | 83242074 | ID=MS.gene072254.t1.exon15;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83242074 | 83242399 | 83242074 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83241312 | 83241417 | 83241312 | ID=MS.gene072254.t1.exon16;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83241312 | 83241417 | 83241312 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83240773 | 83240922 | 83240773 | ID=MS.gene072254.t1.exon17;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83240773 | 83240922 | 83240773 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| chr8.1 | exon | 83240465 | 83240611 | 83240465 | ID=MS.gene072254.t1.exon18;Parent=MS.gene072254.t1 |
| chr8.1 | CDS | 83240465 | 83240611 | 83240465 | ID=cds.MS.gene072254.t1;Parent=MS.gene072254.t1 |
| Gene Sequence |
| Protein sequence |
