AlfalfaGEDB | MS.gene072353

M. sativa cultivar XinJiangDaYe / MS.gene072353

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072353.t1	XP_003625189.1	97.1	887	26	0	1	887	1	887	1.30E-225	793.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072353.t1	Q9FL51	56.3	371	147	7	505	871	506	865	2.0e-105	385.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072353.t1	A2Q3D8	97.1	887	26	0	1	887	1	887	9.5e-226	793.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene057705	MS.gene072353	0.809567	1.78E-50	-1.69E-46
MS.gene060587	MS.gene072353	0.812052	5.15E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene011673	MS.gene072353	PPI
MS.gene033139	MS.gene072353	PPI
MS.gene068310	MS.gene072353	PPI
MS.gene072353	MS.gene068312	PPI
MS.gene072353	MS.gene07892	PPI
MS.gene072353	MS.gene068316	PPI
MS.gene072353	MS.gene015299	PPI
MS.gene072353	MS.gene052809	PPI
MS.gene072353	MS.gene93947	PPI
MS.gene072353	MS.gene25153	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072353.t1	MTR_7g092430	97.294	887	24	0	1	887	1	887	0.0	1738
MS.gene072353.t1	MTR_4g088320	35.457	973	506	15	7	869	9	969	1.32e-165	509
MS.gene072353.t1	MTR_7g098610	34.909	994	514	18	1	872	10	992	8.30e-165	507
MS.gene072353.t1	MTR_1g069470	33.849	969	507	19	27	872	25	982	1.21e-158	490
MS.gene072353.t1	MTR_2g090710	35.233	965	499	17	32	885	30	979	1.38e-158	490
MS.gene072353.t1	MTR_1g080440	33.467	1001	525	22	1	872	1	989	1.55e-157	488
MS.gene072353.t1	MTR_5g014700	34.298	968	508	23	19	873	18	970	1.59e-154	480
MS.gene072353.t1	MTR_2g014560	33.923	961	499	17	32	873	26	969	2.19e-148	463
MS.gene072353.t1	MTR_5g014720	35.926	810	477	15	86	867	201	996	1.28e-141	446
MS.gene072353.t1	MTR_4g097880	34.762	840	497	16	71	869	134	963	6.57e-139	439

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072353.t1	AT5G06940	62.500	848	300	8	28	871	32	865	0.0	1026
MS.gene072353.t1	AT1G28440	34.418	953	497	14	32	869	23	962	7.14e-162	499
MS.gene072353.t1	AT4G28650	33.569	992	529	21	1	872	1	982	2.45e-154	479
MS.gene072353.t1	AT1G08590	33.036	1008	518	24	6	872	15	1006	7.60e-150	468
MS.gene072353.t1	AT3G49670	33.438	960	515	20	20	869	19	964	7.02e-149	465
MS.gene072353.t1	AT4G28490	34.555	955	485	20	36	869	32	967	2.32e-148	464
MS.gene072353.t1	AT5G65700	32.795	991	516	22	18	885	15	978	7.26e-147	460
MS.gene072353.t1	AT5G65700	32.795	991	516	22	18	885	15	978	7.26e-147	460
MS.gene072353.t1	AT5G49660	34.276	919	472	16	45	864	46	931	1.74e-145	455
MS.gene072353.t1	AT5G65710	33.129	981	511	19	24	871	23	991	1.03e-144	454

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Find 153 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGAAGTGGAATAGGT+TGG	0.548146	7.2:+16732116	None:intergenic
AACACAAGTCCTTGACTCAA+GGG	0.573602	7.2:+16729730	None:intergenic
AACATGAATTCGGTAATCCA+GGG	0.619500	7.2:+16730892	None:intergenic
AACCATTTCTGTAACTGGAC+TGG	0.508865	7.2:-16732286	MS.gene072353:CDS
AACCTGTGCTTTGATCTCTC+TGG	0.442730	7.2:-16730820	MS.gene072353:CDS
AAGAATGTTGCCAAGATTCT+TGG	0.319173	7.2:-16730498	MS.gene072353:CDS
AAGATGATATATCACCAGAT+AGG	0.507281	7.2:+16732194	None:intergenic
AAGGTAATGAAGATGCGGTT+TGG	0.488745	7.2:-16730737	MS.gene072353:CDS
AATATTGGTCTTTGTGGCCC+TGG	0.499359	7.2:-16730909	MS.gene072353:CDS
AATCTTCAAGTGCTTAACAT+GGG	0.645585	7.2:-16731938	MS.gene072353:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGATATATCACCAGAT+AGG	+	chr7.2:16729948-16729967	None:intergenic	30.0%
AATCTTCAAGTGCTTAACAT+GGG	-	chr7.2:16730201-16730220	MS.gene072353:CDS	30.0%
ACCAATATTTCCTTCCAAAA+AGG	+	chr7.2:16731219-16731238	None:intergenic	30.0%
AGATTCACTATACTCATAAC+TGG	+	chr7.2:16730927-16730946	None:intergenic	30.0%
ATGAATGAGAAAAGCTCAAT+AGG	-	chr7.2:16731479-16731498	MS.gene072353:CDS	30.0%
CCTAAAATTAAGCTCATTAG+AGG	-	chr7.2:16730708-16730727	MS.gene072353:CDS	30.0%
CCTATACAATATAAATCCAC+TGG	+	chr7.2:16731372-16731391	None:intergenic	30.0%
CTAACAACTTCTAACATTGA+TGG	+	chr7.2:16732378-16732397	None:intergenic	30.0%
CTCACTTGATATAGTGAAAT+GGG	-	chr7.2:16732218-16732237	MS.gene072353:CDS	30.0%
CTGGAATATTTCCTTCTATA+TGG	+	chr7.2:16730161-16730180	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	16729691	16732470	16729691	ID=MS.gene072353
chr7.2	mRNA	16729691	16732470	16729691	ID=MS.gene072353.t1;Parent=MS.gene072353
chr7.2	exon	16730172	16732470	16730172	ID=MS.gene072353.t1.exon1;Parent=MS.gene072353.t1
chr7.2	CDS	16730172	16732470	16730172	ID=cds.MS.gene072353.t1;Parent=MS.gene072353.t1
chr7.2	exon	16729691	16730055	16729691	ID=MS.gene072353.t1.exon2;Parent=MS.gene072353.t1
chr7.2	CDS	16729691	16730055	16729691	ID=cds.MS.gene072353.t1;Parent=MS.gene072353.t1

Gene Sequence

>MS.gene072353

ATGGCTACTACTACATTCTGTATATTCCTATTCCTTCTTTCTCTAACCTTCCAAATCTTCAACCTCACTTCATCTTCATCAGAAGTTGATACCCTTCTCTCCTTCAAATCCACCATTCAAGACTCTAAAAAAGCTTTATCAACTTGGTCAAACACTTCATCAAACCATTTCTGTAACTGGACTGGAATCTCTTGTTCTTCCACTACACCTTCTGATTCACTCTCAGTAACTTCTGTTAATCTTCAAAGCTTAAACCTATCTGGTGATATATCATCTTCTATATGCGACCTTCCTAATCTTTCTTATCTTAACCTTGCTAATAACATCTTTAACCAACCTATTCCACTTCATCTTTCTCAATGTAGTTCATTGAAAAGCTTGAATCTAAGTAATAATCTTATTTGGGGTACTATCCCTTCTCAGATTTCTCAGTTTGTTTCTTTGTCAGTGCTTGATTTGAGTAGAAACCATATAGAAGGAAATATTCCAGATAGTTTAGGTTCATTGAAGAATCTTCAAGTGCTTAACATGGGAAGTAACTTGCTTTCAGGTGATGTACCTCAAGTTTTTGGTAACTTGACTAAGCTAGAAGTTCTTGATTTGTCTATGAATCCTTACCTGGTGAGTGAGATTCCAGAAGATGTTGGTGAGCTTGGAAATCTAAAGCAACTTTTGTTGCAGGGTTCTTCTTTTCAAGGTGAAGTTCCTGAGTCTTTGAAGGGTTTGATTAGTTTAACTCATTTAGATCTCTCTGAGAATAATCTAACTGGTAAGGTTCCAAACACTCTTGTAAGTTCTCTCATGAACTTGGTTTCTTTTGATGTTTCACAAAACAAGCTTTTAGGTTCATTTCCAAATGGTTTATGTAAAGGAAAAGGGCTTGTAAATCTAAGTCTTCATACAAATAGGTTCACTGGTTTAATACCTAACTCAACTAGTGAATGTAAGAGTCTTGAGAGATTCCAAGTTCAGAACAATGGTTTCTCTGGTGATTTCCCAATTGTGTTATTTTCACTTCCTAAAATTAAGCTCATTAGAGGTGAAAACAACAGATTCACAGGACAAATACCTGAGTCAATCTCAGAAGCTGTTCAGTTAGAGCAAGTTCAGCTTGATAACAATCTTTTTGATGGTAAAATTCCTTCAGGTCTTGGATTTGTTAAAAGCTTATACAGATTTTCTGCTTCTCTAAATCATTTTTATGGTGAACTTCCACCTAATTTTTGTGACTCACCAGTTATGAGTATAGTGAATCTCTCTCACAATTCTCTTTCTGGTTCTATCCCTCAGCTGAAAAAATGCAGGAAACTAGTTTCACTTTCTTTAGCTGATAACAGTTTAACAGGAGAAATTCCTAATTCTCTTGCTGAACTACCTGTGCTCACTTACCTTGATCTTTCTGATAACAATCTCACTGGTTCAATCCCACAAAGTCTTCAAAACTTGAAACTTGCTCTTTTCAATGTGTCATTCAATCAGTTATCAGGTAAAGTACCATACTCTTTGATTTCTGGTCTTCCTGCATCCTTTTTGGAAGGAAATATTGGTCTTTGTGGCCCTGGATTACCGAATTCATGTTCTGATGATGGAAAGCCAATACACCATACTGCTTCTGGTTTAACAACCTTAACCTGTGCTTTGATCTCTCTGGCATTTGTTGCTGGAACTGTTCTTGTTGCCAGTGGATTTATATTGTATAGGAGATCTTGCAAAGGTAATGAAGATGCGGTTTGGCGTTCGGTGTTTTTCTATCCACTTAGAATTACTGAGCACGATCTTGTTATAGGGATGAATGAGAAAAGCTCAATAGGAAATGGAGATTTTGGTAATGTTTATGTTGTGAGTTTACCTAGTGGTGATTTAGTATCTGTAAAGAAATTGGTAAAATTTGGAAACCAGTCTTCAAAGAGTTTGAAAGTTGAGGTCAAAACATTGGCTAAAATTAGGCATAAGAATGTTGCCAAGATTCTTGGGTTCTGTCATTCTGATGAATCAGTTTTTCTCATCTATGAGTACTTGCATGGTGGAAGCTTAGGGGACTTGATTTGTAGTCAAAACTTTCAGTTGCATTGGGGAGTTAGATTAAAGATTGCTATTGGAGTTGCTCAAGGACTCGCATATCTTCACAAGGACTATGTACCACACTTGGTTCATAGAAATCTCAAGTCAAAGAACATTCTGTTGGATGTTAACTTTGAGCCAAAATTGACACATTTTGCTCTTGATAGGATTGTTGGAGAAGCTGCATTTCAATCTATTTTGGATTCTGAAGCTGCATCTTCTTGTTACATTGCTCCAGGTATGAGAAGTTACTATTAATAACGGTGGCACTAATGGTCATTTTACAACTCAGACAATAATGTTTTGTCATATTAATTAATTGACGTAGTAATTGTATTATTTGTTGCATTGCAGAATATGGTTACAATAAGAAAGCAAGTGAGCAATTGGATGTGTACAGCTTTGGTGTTGTATTGCTAGAGCTAGTTTGTGGAAGACAAGCGGAGGAAAAAGATTCAAGTGACTCCTCACTTGATATAGTGAAATGGGTTAGAAGGAAAGTGAATATTACTAATGGGGTGCAACAAGTTCTTGACACTAGAATATCAAATACTTGTCACCAAGAAATGATTGGTGCTTTAGATATTGCTCTACGTTGCACTTCTGTGGTACCTGAGAAAAGGCCATCAATGTTAGAAGTTGTTAGAGGTCTTCAGTCCCTTGAGTCAAGGACTTGTGTTGCAAATTTGCAGGGTGCAAATGATGAACCCTCCATTCTA

Protein sequence

>MS.gene072353.t1

MATTTFCIFLFLLSLTFQIFNLTSSSSEVDTLLSFKSTIQDSKKALSTWSNTSSNHFCNWTGISCSSTTPSDSLSVTSVNLQSLNLSGDISSSICDLPNLSYLNLANNIFNQPIPLHLSQCSSLKSLNLSNNLIWGTIPSQISQFVSLSVLDLSRNHIEGNIPDSLGSLKNLQVLNMGSNLLSGDVPQVFGNLTKLEVLDLSMNPYLVSEIPEDVGELGNLKQLLLQGSSFQGEVPESLKGLISLTHLDLSENNLTGKVPNTLVSSLMNLVSFDVSQNKLLGSFPNGLCKGKGLVNLSLHTNRFTGLIPNSTSECKSLERFQVQNNGFSGDFPIVLFSLPKIKLIRGENNRFTGQIPESISEAVQLEQVQLDNNLFDGKIPSGLGFVKSLYRFSASLNHFYGELPPNFCDSPVMSIVNLSHNSLSGSIPQLKKCRKLVSLSLADNSLTGEIPNSLAELPVLTYLDLSDNNLTGSIPQSLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNIGLCGPGLPNSCSDDGKPIHHTASGLTTLTCALISLAFVAGTVLVASGFILYRRSCKGNEDAVWRSVFFYPLRITEHDLVIGMNEKSSIGNGDFGNVYVVSLPSGDLVSVKKLVKFGNQSSKSLKVEVKTLAKIRHKNVAKILGFCHSDESVFLIYEYLHGGSLGDLICSQNFQLHWGVRLKIAIGVAQGLAYLHKDYVPHLVHRNLKSKNILLDVNFEPKLTHFALDRIVGEAAFQSILDSEAASSCYIAPEYGYNKKASEQLDVYSFGVVLLELVCGRQAEEKDSSDSSLDIVKWVRRKVNITNGVQQVLDTRISNTCHQEMIGALDIALRCTSVVPEKRPSMLEVVRGLQSLESRTCVANLQGANDEPSIL