AlfalfaGEDB | MS.gene33693

M. sativa cultivar XinJiangDaYe / MS.gene33693

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005515 GO:0007165 GO:0008150 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF01582.23 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33693.t1	XP_003604536.1	92.2	1086	85	0	1	1086	3	1088	0.00E+00	1966

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33693.t1	Q40392	37.4	796	462	19	60	838	2	778	4.9e-130	467.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33693.t1	G7JKM7	92.2	1086	85	0	1	1086	3	1088	0.0e+00	1966.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049217	MS.gene33693	-0.806958	6.39E-50	-1.69E-46
MS.gene049611	MS.gene33693	0.835392	1.72E-56	-1.69E-46
MS.gene049634	MS.gene33693	0.810313	1.23E-50	-1.69E-46
MS.gene050333	MS.gene33693	-0.800748	1.25E-48	-1.69E-46
MS.gene050381	MS.gene33693	0.806826	6.81E-50	-1.69E-46
MS.gene050444	MS.gene33693	-0.809447	1.88E-50	-1.69E-46
MS.gene050504	MS.gene33693	-0.80514	1.54E-49	-1.69E-46
MS.gene050612	MS.gene33693	-0.82025	7.58E-53	-1.69E-46
MS.gene050675	MS.gene33693	-0.825983	3.48E-54	-1.69E-46
MS.gene05079	MS.gene33693	0.804694	1.91E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene007345	MS.gene33693	PPI
MS.gene007347	MS.gene33693	PPI
MS.gene007601	MS.gene33693	PPI
MS.gene014161	MS.gene33693	PPI
MS.gene015729	MS.gene33693	PPI
MS.gene017938	MS.gene33693	PPI
MS.gene018317	MS.gene33693	PPI
MS.gene020584	MS.gene33693	PPI
MS.gene023462	MS.gene33693	PPI
MS.gene028757	MS.gene33693	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene33693.t1	MTR_4g014240	92.265	1086	84	0	1	1086	3	1088	2048
MS.gene33693.t1	MTR_4g014320	82.860	1091	167	4	1	1086	1	1076	1820
MS.gene33693.t1	MTR_4g014340	61.004	1036	375	11	69	1085	71	1096	1164
MS.gene33693.t1	MTR_4g014280	55.609	1034	395	11	61	1086	83	1060	1065
MS.gene33693.t1	MTR_4g014300	56.647	1038	384	12	69	1079	90	1088	1053
MS.gene33693.t1	MTR_4g013370	54.563	1030	375	15	68	1082	8	959	1001
MS.gene33693.t1	MTR_4g014310	54.795	1022	404	13	71	1086	55	1024	998
MS.gene33693.t1	MTR_4g014310	54.795	1022	404	13	71	1086	79	1048	998
MS.gene33693.t1	MTR_8g020290	53.069	1059	458	19	37	1086	29	1057	992
MS.gene33693.t1	MTR_4g014120	55.800	1000	415	12	62	1045	1	989	986

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33693.t1	AT5G41750	34.520	927	531	15	61	958	4	883	6.34e-165	515
MS.gene33693.t1	AT5G41750	34.520	927	531	15	61	958	4	883	6.34e-165	515
MS.gene33693.t1	AT5G17680	37.608	811	475	16	66	862	14	807	5.60e-161	511
MS.gene33693.t1	AT5G17680	37.485	811	475	17	66	862	14	806	1.87e-158	504
MS.gene33693.t1	AT5G17680	27.305	282	152	10	696	973	892	1124	9.76e-11	67.0
MS.gene33693.t1	AT5G41540	36.682	856	493	13	63	885	4	843	8.70e-158	495
MS.gene33693.t1	AT5G41550	35.287	870	512	15	61	896	4	856	6.59e-157	494
MS.gene33693.t1	AT4G11170	33.612	958	560	17	63	984	4	921	4.27e-156	493
MS.gene33693.t1	AT5G40910	33.704	988	546	22	70	1019	12	928	3.46e-153	485
MS.gene33693.t1	AT5G40910	33.704	988	546	22	70	1019	12	928	3.46e-153	485

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Find 183 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTGGCATGGAGTGC+AGG	0.519113	4.3:-83980589	MS.gene33693:intron
AACAAATCTGCCAATTTATC+TGG	0.195240	4.3:-83982653	MS.gene33693:CDS
AACTTCAGCTTCCTAAGTGT+TGG	0.478948	4.3:+83980828	None:intergenic
AAGAACTAATGGAATGCCTT+TGG	0.370568	4.3:+83981591	None:intergenic
AAGACTATGCCTCTTCATCT+TGG	0.493132	4.3:-83982859	MS.gene33693:CDS
AAGAGTGTATAGATCCACCA+AGG	0.738790	4.3:-83982699	MS.gene33693:CDS
AAGCACCTTGTTAGCTCAAA+AGG	0.410929	4.3:-83982186	MS.gene33693:CDS
AAGCTTGAAATCCTACATTT+AGG	0.256300	4.3:-83979898	MS.gene33693:CDS
AAGGGTAATGCATCCAACAG+AGG	0.673823	4.3:+83980682	None:intergenic
AAGGTTCCTGAAGGAGTTGC+CGG	0.426421	4.3:-83980211	MS.gene33693:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATCTGCCAATTTATC+TGG	-	chr4.3:83979765-83979784	MS.gene33693:CDS	30.0%
AAGAGAGAATATGTAAGTTG+TGG	-	chr4.3:83982019-83982038	MS.gene33693:CDS	30.0%
AAGCTTGAAATCCTACATTT+AGG	-	chr4.3:83982520-83982539	MS.gene33693:intron	30.0%
AATTATACAAGACATGGGTA+GGG	-	chr4.3:83981161-83981180	MS.gene33693:intron	30.0%
AATTTATTCAGGCATGTGTA+TGG	-	chr4.3:83983287-83983306	MS.gene33693:intron	30.0%
ACATGAAGGAAAACTTTCAA+TGG	+	chr4.3:83982554-83982573	None:intergenic	30.0%
ACATTCTCTTGCAAATATTG+TGG	-	chr4.3:83982777-83982796	MS.gene33693:CDS	30.0%
AGAGAGAATATGTAAGTTGT+GGG	-	chr4.3:83982020-83982039	MS.gene33693:CDS	30.0%
ATAACGCGTTTGTGAAATAT+TGG	+	chr4.3:83979293-83979312	None:intergenic	30.0%
ATCAGAGAATATGATAGAGT+TGG	-	chr4.3:83982444-83982463	MS.gene33693:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	83979051	83983389	83979051	ID=MS.gene33693
chr4.3	mRNA	83979051	83983389	83979051	ID=MS.gene33693.t1;Parent=MS.gene33693
chr4.3	exon	83983290	83983389	83983290	ID=MS.gene33693.t1.exon1;Parent=MS.gene33693.t1
chr4.3	CDS	83983290	83983389	83983290	ID=cds.MS.gene33693.t1;Parent=MS.gene33693.t1
chr4.3	exon	83982632	83983175	83982632	ID=MS.gene33693.t1.exon2;Parent=MS.gene33693.t1
chr4.3	CDS	83982632	83983175	83982632	ID=cds.MS.gene33693.t1;Parent=MS.gene33693.t1
chr4.3	exon	83981168	83982266	83981168	ID=MS.gene33693.t1.exon3;Parent=MS.gene33693.t1
chr4.3	CDS	83981168	83982266	83981168	ID=cds.MS.gene33693.t1;Parent=MS.gene33693.t1
chr4.3	exon	83980590	83980886	83980590	ID=MS.gene33693.t1.exon4;Parent=MS.gene33693.t1
chr4.3	CDS	83980590	83980886	83980590	ID=cds.MS.gene33693.t1;Parent=MS.gene33693.t1
chr4.3	exon	83979051	83980271	83979051	ID=MS.gene33693.t1.exon5;Parent=MS.gene33693.t1
chr4.3	CDS	83979051	83980271	83979051	ID=cds.MS.gene33693.t1;Parent=MS.gene33693.t1

Gene Sequence

>MS.gene33693

ATGGTGCATGGTTTTGTATTGCGGAGGTATGTAACTGCAGCTGTTGGTTCAATTCGGAAATTTGGAAGATTTTCATGTTGGCATGAAACACCATATTCAAGTAAGTAACACATTAAATATGCACTCTATCAGTTTTTTTCTTTCTTTTGACTCATTGTGAGAAGGTTTTTTTTCAACAATACTTATTTTCATTCTGTTTATACTGAGTTTACAGAGAAAGGAATTTCGACTGTTAATTCCCAATATTTCACAAACGCGTTATGTTTGGGGCCTCGTATAAGTTCTCAATTTTCTTCAATTTCAACAAATACAACAACAGAATATGATGTTTTTGTTAGCTTTCGAGGCAAAGACATCCGCGGGGATTTTCTAAGTCATTTGATTGATGCTTTTCGTCGAAAGAAAATTAAAGCCTTTGTAGATGATGAACTTAAGAGGGGAGATGAAATACCACAATCACTTGTCAGAGGAATTGAAGGATCATTAATTTCCTTGATCATATTCTCACAAGACTATGCCTCTTCATCTTGGTGTTTGGAAGAACTTGTTACAATACTTCAATGCAGGGAGAAATATGGACAGATTGTTATACCTATTTTTTATCAGGTAGATCCAACAGATGTAAGATATCAAATGAAGAGTTATGAAAATGCGTTTGTTGAACACCAAAGAGTGTATAGATCCACCAAGGTGCAAATTTGGAGACATGCTTTGAACAAATCTGCCAATTTATCTGGAATTAAGTCATCAGATTTTCGGTAAGTTTTATATTTTTTTTTCAGCTCATAATTTTTTAGACTATTTGGCCTCTGTTATTAAGATAAATTTATGCAAATTATCACCAAGTGAATGTTTTCACTTGAAAGTGCCGCTTTTGAGTTGTTGATTTTCAACATATATTAGTCAATGATGCAACCTGGTAATCATGGTCTAGGATTTAATTTGGACACCACTTTGTTAACGACTTGGCCCATCACTTTTACCATTTGAGATGTTACTTACAGGACAAGTTAGCCCATCACTTTTAATAGTAGATATACCGAAGACACACTATTTTATATATTTCAGTCTCACAAAAAACTTCCATTGTATCTTAGACTTTGTCTCTCCATTTGTTGTATAGGAATGATGTCCAACTCCTTAAAGAAATCATCAAATGTGTGTCGATGAATTTGAACAATAAGCACCTTGTTAGCTCAAAAGGACTCATTGGAATTGGCAAACAAATTTCACATCTAAAATCATTGTTAACCCAAGAGTCAGAAGATATTCGTGTTGTTGGGATTTGGGGTATGGGTGGTATTGGCAAGACAACCCTTGCAGAAGAAGTATTTCACCAACTACAATCTCAGTATGAAGGTTGTTGTTTTCTAGGAAACATAAGGGAGGAATCATCAAAACATGGAATGGTTTTCTTAAAAGAAAAGCTTATTTCTGCACTATTAGATGAAGCTGTTAAAGTTGACACTGCAAATAGATTGCCTCATTATGTTAAAACTAGGATTCGTCGCAAGAAAGTTCTTATTGTTTTAGACGATGTGAATGATTATGATCAACTTGAAATCTTAGTTGGAGATCATGATTTGTTTGGATTTGGTAGTAGAATCATTATAACAACAAGAGATAAGCAAATGCTTTCTCAAGATGTTGATGATATATATGAGGTAGGTGCATTGGACATTGATAAATCACTTAAGCTTTTCAATTTGAATGCTTTCAAAGGTAAGGAACTTGAAATTGAGTATAATGATCTATCAAAGAGGGTGGTGAATTATTCCAAAGGCATTCCATTAGTTCTTAAAGTTTTGGCTCATCTTCTTCGCGGAAAAGATAAGCTAGTATGGGAAAGTCAACTAGACAAGCTTAGAAAAATGCCAAATAAAAAAGTTCAAGATGTAATGAGATTGAGTTATGGTGATCTAGATCGCGAAGAGAAAAAGATGTTTTTAGATATTGCATGTTTTTTCAATGGGTCGAATTTGAAAGTGGACTACCTAAAACTATTGTTGAAAGATTCTGAAAGTGATAATTCAGTAGCCAGTGGGTTAGAAAGGTTGAAAGATAAAGATCTTGTATCTATTTCTAAACATAATGGTATATCTATGCATGGAATTATACAAGACATGGGTAGGGAGATTGTTCGCCAAGAATCAAGTGGAGACCCTGGAAGCCGTAGTCGATTGTGGGATGATGACATTTATGAAGTGTTAGAAAATGACAAGGTAAAAGCCTAAAATATAAAATCTTTGATACCATTATAGTTTTTTTTTAGTAAATCATTTTGGTTCTTAAATGTTTATGGTAATGCGCTATCATTAAATGTATCTTGCGTAAATCAATTTGGTCTGTAAAATTACAAACAAAAGACACATTTGGGAGTTTTTTTTTTGTAATTTTGATACATTCAGCGACATAGTGATAGCGCGTCACATATTTAGGGACCAAAATGAATATTCACTGCACTTCTAAGGATGTTTAAATTGGTCTTCTAATCTGATGACAGGGGACTGAAGAAATTAGAAGCATATGGATGCCATTGCCAACACTTAGGAAGCTGAAGTTAAGTCCTTCAACATTTGCTAATATGAGAAATCTACAATTTCTGTATGTCCCTAATGTATATGATCATGATAGTTTTGATCTTCTTCCTCAAGGACTTCATTCTATGCCACCTGAACTAAGATACCTCTGTTGGATGCATTACCCTTTGAAATCATTGCCAAAAGATTTTTCAGCCAAGAAACTCGTTATATTGGACTTGTCATATAGTCGAGTTGAAAAACTCTGGCATGGAGTGCAGGTAACAAATTATACATAGAATAAACCCTCAAATTTGTTTCCAAACTTATCTCTCTCCTGGTTTTTCTTTAAGCAAATAAAAATATGAAGCAGTCCTTAACGTTTGCTACATATATGCCATGTTAAAAAATTAAAGACTAGTTATTTTCATTTATTTGAGGGACAAAGTAAGAGAGAATATGTAAGTTGTGGGACAGAATTGGTTGTTTACTCGTCATATGTGTCTTTCTATTATATTTTCTATCTTTATTTAACTAGTTCAGAATTAACTAAAGCTCATGCATCATGTGAAGTCTTCATTTGATTTATTTTGTTACAGAACCTGCTGAATTTGAAAGAAGTTAAGCTCTTTTACTCAAGGTTCCTGAAGGAGTTGCCGGACTTTACGAAAGCCCTGAATCTAGAAGTGTTGGATATCCATTTTTGTGGTCAGTTGACTAGTGTGCATCCATCTATTTTCTCTCTAGAAAAGCTTGAGAAATTGGATCTCAGTCATTGCACTTCCCTTACCGAGCTAACAAGTGATACACATTCAAGCTCCCTCAGATGTCTCAGCCTTAAGTTTTGCAAAAATATAAGAAAGTTCTCTGTGACATCAGAGAATATGATAGAGTTGGATTTACAATACACACAAATCAATGCATTGCCTGCATCGTTTGGACGTCAAACCAAGCTTGAAATCCTACATTTAGGAAACTGTTCCATTGAAAGTTTTCCTTCATGTTTGAAGAATTTGATAAGACTACAATATCTAGACATAAGATATTGCCTTAAGCTGCAAACTCTACCAGAGCTTCCTCAATCTCTTGAAGTTCTACACGCGCGAGGGTGCACATCACTAGAGACTGTGTTGTTCCCTTCAATTCCTGAACAGTTCAAGGAGAACAGGAATAGGGTTGTATTCGCAAATTGCTTGAAATTGGATGAACATTCTCTTGCAAATATTGTGGTCAATGCACAGATAAACATTATGAAATTTGCATACCAACATGTATCAGCTTTGGAACATGATTTTCATAATAAGTTCAATGATTATAAGGATCACAATGATTCTTATCAAGCAATTTACGTGTATCCAGGAAACAGCGTTCCAGAGTGGTTTGAGTATATGACAACAACGGATTATGTAGTCATTGATCCATCTTCTTCTACATCGCGTTCCCCTTTGCTCGGCTTCATTTTCTGTTTTGTACTTGGTGGGAACCGGTTAATTGTTGCCCCGTTAAAATTTAACATCACTATCTGTGATCTTGAGGACCAAGGTAAGGAGGAGGAGCATTTTGAACTCTGCATATCTAGGCCATCTGCAAGTATTGTATCCGATCATGTTTTTATGATCTATGACAAACAATGTTCTTGCTACCTAAATAGCAAAGCCAAAGATATGACAAGGTTTGAAATCAAGGTAACAACACGTTTATCATCCATGCATCCTATAATTTATTCAGGCATGTGTATGGAGCTAAAAGGGTTTGGTGTTAACGTAATAGATGCCTCAGCATATCACAGTTTCATTCAGACGATGGGATTGCTTGATTGA

Protein sequence

>MS.gene33693.t1

MVHGFVLRRYVTAAVGSIRKFGRFSCWHETPYSKKGISTVNSQYFTNALCLGPRISSQFSSISTNTTTEYDVFVSFRGKDIRGDFLSHLIDAFRRKKIKAFVDDELKRGDEIPQSLVRGIEGSLISLIIFSQDYASSSWCLEELVTILQCREKYGQIVIPIFYQVDPTDVRYQMKSYENAFVEHQRVYRSTKVQIWRHALNKSANLSGIKSSDFRNDVQLLKEIIKCVSMNLNNKHLVSSKGLIGIGKQISHLKSLLTQESEDIRVVGIWGMGGIGKTTLAEEVFHQLQSQYEGCCFLGNIREESSKHGMVFLKEKLISALLDEAVKVDTANRLPHYVKTRIRRKKVLIVLDDVNDYDQLEILVGDHDLFGFGSRIIITTRDKQMLSQDVDDIYEVGALDIDKSLKLFNLNAFKGKELEIEYNDLSKRVVNYSKGIPLVLKVLAHLLRGKDKLVWESQLDKLRKMPNKKVQDVMRLSYGDLDREEKKMFLDIACFFNGSNLKVDYLKLLLKDSESDNSVASGLERLKDKDLVSISKHNGISMHGIIQDMGREIVRQESSGDPGSRSRLWDDDIYEVLENDKGTEEIRSIWMPLPTLRKLKLSPSTFANMRNLQFLYVPNVYDHDSFDLLPQGLHSMPPELRYLCWMHYPLKSLPKDFSAKKLVILDLSYSRVEKLWHGVQNLLNLKEVKLFYSRFLKELPDFTKALNLEVLDIHFCGQLTSVHPSIFSLEKLEKLDLSHCTSLTELTSDTHSSSLRCLSLKFCKNIRKFSVTSENMIELDLQYTQINALPASFGRQTKLEILHLGNCSIESFPSCLKNLIRLQYLDIRYCLKLQTLPELPQSLEVLHARGCTSLETVLFPSIPEQFKENRNRVVFANCLKLDEHSLANIVVNAQINIMKFAYQHVSALEHDFHNKFNDYKDHNDSYQAIYVYPGNSVPEWFEYMTTTDYVVIDPSSSTSRSPLLGFIFCFVLGGNRLIVAPLKFNITICDLEDQGKEEEHFELCISRPSASIVSDHVFMIYDKQCSCYLNSKAKDMTRFEIKVTTRLSSMHPIIYSGMCMELKGFGVNVIDASAYHSFIQTMGLLD