Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072458.t1 | XP_024627141.1 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 4.10E-127 | 464.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072458.t1 | Q9ZVL3 | 61.2 | 242 | 62 | 6 | 16 | 256 | 5 | 215 | 2.5e-56 | 220.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072458.t1 | I3TAX9 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 3.0e-127 | 464.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene072458.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050859 | MS.gene072458 | 0.812099 | 5.03E-51 | -1.69E-46 |
| MS.gene050860 | MS.gene072458 | 0.832418 | 9.56E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072458.t1 | MTR_7g113680 | 99.615 | 260 | 1 | 0 | 1 | 260 | 52 | 311 | 0.0 | 540 |
| MS.gene072458.t1 | MTR_1g082660 | 83.539 | 243 | 36 | 1 | 1 | 243 | 1 | 239 | 4.58e-140 | 394 |
| MS.gene072458.t1 | MTR_3g099180 | 66.038 | 159 | 39 | 4 | 83 | 238 | 37 | 183 | 1.38e-62 | 196 |
| MS.gene072458.t1 | MTR_3g099180 | 66.038 | 159 | 39 | 4 | 83 | 238 | 37 | 183 | 1.58e-62 | 196 |
| MS.gene072458.t1 | MTR_2g023340 | 49.468 | 188 | 70 | 8 | 82 | 259 | 66 | 238 | 8.70e-53 | 172 |
| MS.gene072458.t1 | MTR_2g081600 | 59.770 | 87 | 34 | 1 | 100 | 185 | 21 | 107 | 2.10e-31 | 112 |
| MS.gene072458.t1 | MTR_2g081630 | 61.446 | 83 | 31 | 1 | 100 | 181 | 21 | 103 | 8.60e-31 | 111 |
| MS.gene072458.t1 | MTR_3g012030 | 39.744 | 78 | 47 | 0 | 102 | 179 | 9 | 86 | 1.02e-11 | 63.9 |
| MS.gene072458.t1 | MTR_8g041420 | 37.179 | 78 | 49 | 0 | 102 | 179 | 9 | 86 | 1.90e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072458.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene072458.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene072458.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene072458.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene072458.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene072458.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene072458.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene072458.t1 | AT3G48590 | 68.790 | 157 | 44 | 3 | 83 | 238 | 47 | 199 | 1.70e-70 | 216 |
| MS.gene072458.t1 | AT5G63470 | 68.987 | 158 | 45 | 4 | 83 | 238 | 60 | 215 | 2.00e-67 | 209 |
| MS.gene072458.t1 | AT5G63470 | 68.987 | 158 | 45 | 4 | 83 | 238 | 60 | 215 | 2.00e-67 | 209 |
| MS.gene072458.t1 | AT1G56170 | 75.758 | 132 | 25 | 3 | 80 | 209 | 55 | 181 | 1.31e-66 | 205 |
| MS.gene072458.t1 | AT1G56170 | 75.758 | 132 | 25 | 3 | 80 | 209 | 55 | 181 | 1.31e-66 | 205 |
| MS.gene072458.t1 | AT5G50480 | 49.123 | 171 | 63 | 5 | 79 | 248 | 35 | 182 | 2.66e-46 | 154 |
| MS.gene072458.t1 | AT5G27910 | 45.349 | 172 | 72 | 8 | 77 | 248 | 15 | 164 | 4.55e-39 | 134 |
| MS.gene072458.t1 | AT5G50490 | 38.889 | 180 | 96 | 4 | 70 | 249 | 8 | 173 | 1.66e-34 | 123 |
| MS.gene072458.t1 | AT5G50470 | 39.560 | 182 | 71 | 8 | 79 | 251 | 44 | 195 | 9.52e-31 | 114 |
| MS.gene072458.t1 | AT5G38140 | 43.269 | 104 | 55 | 2 | 76 | 178 | 44 | 144 | 1.38e-25 | 100 |
| MS.gene072458.t1 | AT3G12480 | 37.179 | 78 | 49 | 0 | 102 | 179 | 9 | 86 | 1.28e-11 | 63.9 |
Find 92 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCAGCACTTCATCTTTC+AGG | 0.158704 | 7.3:+3364133 | None:intergenic |
| GTCATTTGGTTTGGCTGATA+TGG | 0.158964 | 7.3:+3364597 | None:intergenic |
| GACTGATATCTTTGATTTCC+TGG | 0.246183 | 7.3:-3364178 | MS.gene072458:CDS |
| TCAACCTGCTGGAGCTCAGC+TGG | 0.263146 | 7.3:-3364523 | MS.gene072458:CDS |
| GGGGCCCCAGTCATTTGGTT+TGG | 0.316348 | 7.3:+3364588 | None:intergenic |
| GGAGATGGTGGTCGCTGTTC+CGG | 0.343092 | 7.3:+3363925 | None:intergenic |
| GGCTGCTGAGCATACATGTT+TGG | 0.345011 | 7.3:+3363985 | None:intergenic |
| GCCTCCCAAGTTGGAACTGC+TGG | 0.356093 | 7.3:-3364036 | MS.gene072458:CDS |
| GATCCGTTGTTACATCAGTT+GGG | 0.366704 | 7.3:-3364563 | MS.gene072458:CDS |
| ATCCTGGGGCCCCAGTCATT+TGG | 0.379289 | 7.3:+3364583 | None:intergenic |
| TCATTTGGTTTGGCTGATAT+GGG | 0.380613 | 7.3:+3364598 | None:intergenic |
| ACTGATGTAACAACGGATCC+TGG | 0.389880 | 7.3:+3364567 | None:intergenic |
| TGGAACTGCTGGTGTCATAA+TGG | 0.411463 | 7.3:-3364025 | MS.gene072458:CDS |
| CACAACCAGAATCCGCAAAT+GGG | 0.411828 | 7.3:-3364660 | MS.gene072458:CDS |
| AGAGGAACAATGCCTGTTGC+TGG | 0.417994 | 7.3:-3364102 | MS.gene072458:CDS |
| GGATCCGTTGTTACATCAGT+TGG | 0.426256 | 7.3:-3364564 | MS.gene072458:CDS |
| AACAACAGCTGCAATCCTTC+TGG | 0.435091 | 7.3:-3364446 | MS.gene072458:CDS |
| GCTGCTGAGCATACATGTTT+GGG | 0.435445 | 7.3:+3363986 | None:intergenic |
| CATCTCAGCATCTAGTGATC+TGG | 0.437549 | 7.3:+3363904 | None:intergenic |
| CAGTGTGGTTCCATGAGCGC+AGG | 0.449372 | 7.3:+3364256 | None:intergenic |
| ACAAATGTGGCCACAGCCTC+CGG | 0.450073 | 7.3:-3363944 | MS.gene072458:CDS |
| GCACAACCAGAATCCGCAAA+TGG | 0.451270 | 7.3:-3364661 | MS.gene072458:CDS |
| CAAGAACCACAGCCTTCCTC+TGG | 0.452736 | 7.3:-3364385 | MS.gene072458:CDS |
| GCATCAGCAGGACCAGCAAC+AGG | 0.455014 | 7.3:+3364090 | None:intergenic |
| GTTGCTGCTGTTGCTGCTGA+TGG | 0.455992 | 7.3:+3364472 | None:intergenic |
| GGCCTGTGAGATGTTCATAT+TGG | 0.456864 | 7.3:-3364286 | MS.gene072458:CDS |
| TGGAGTTAACCCTGCGCTCA+TGG | 0.458619 | 7.3:-3364266 | MS.gene072458:CDS |
| CAGTCCACTGGTCAACCTGC+TGG | 0.464075 | 7.3:-3364534 | MS.gene072458:CDS |
| CACATTTGTGGTGCCATGTA+GGG | 0.465255 | 7.3:+3363958 | None:intergenic |
| CTGATGTAACAACGGATCCT+GGG | 0.469388 | 7.3:+3364568 | None:intergenic |
| CTGGTACTGGTTTGACCAGA+AGG | 0.471679 | 7.3:+3364431 | None:intergenic |
| CAACCTGCTGGAGCTCAGCT+GGG | 0.476224 | 7.3:-3364522 | MS.gene072458:CDS |
| TGACACCAGCAGTTCCAACT+TGG | 0.478083 | 7.3:+3364031 | None:intergenic |
| GGAACTGCTGGTGTCATAAT+GGG | 0.479046 | 7.3:-3364024 | MS.gene072458:CDS |
| TTGTGGTGCCATGTAGGGAT+GGG | 0.484954 | 7.3:+3363963 | None:intergenic |
| AACCAAATGACTGGGGCCCC+AGG | 0.486456 | 7.3:-3364585 | MS.gene072458:CDS |
| TTTGTGGTGCCATGTAGGGA+TGG | 0.486986 | 7.3:+3363962 | None:intergenic |
| GGAGGCTGTGGCCACATTTG+TGG | 0.486993 | 7.3:+3363946 | None:intergenic |
| GCAACAGGCATTGTTCCTCT+TGG | 0.487666 | 7.3:+3364105 | None:intergenic |
| ACCACACTGAAGAGAACAAA+AGG | 0.492883 | 7.3:-3364242 | MS.gene072458:CDS |
| CCACATTTGTGGTGCCATGT+AGG | 0.497501 | 7.3:+3363957 | None:intergenic |
| TACATGTTTGGGTCCATCAC+AGG | 0.504424 | 7.3:+3363997 | None:intergenic |
| TATCAGCCAAACCAAATGAC+TGG | 0.504884 | 7.3:-3364594 | MS.gene072458:CDS |
| CCTCAGCATGCCTCCCAAGT+TGG | 0.514710 | 7.3:-3364045 | MS.gene072458:CDS |
| TCTTGATCCTTGCCAGAGGA+AGG | 0.515769 | 7.3:+3364373 | None:intergenic |
| GTTGCTGCTGATGGATATGC+TGG | 0.517658 | 7.3:+3364481 | None:intergenic |
| TGACCCAGCTGAGCTCCAGC+AGG | 0.517937 | 7.3:+3364519 | None:intergenic |
| CCAGTACCAGGAAATTGAAA+AGG | 0.518655 | 7.3:-3364418 | MS.gene072458:CDS |
| CTTCTGGTCAAACCAGTACC+AGG | 0.521956 | 7.3:-3364430 | MS.gene072458:CDS |
| ATCCGTTGTTACATCAGTTG+GGG | 0.531831 | 7.3:-3364562 | MS.gene072458:CDS |
| GGTCGCTGTTCCGGAGGCTG+TGG | 0.539229 | 7.3:+3363934 | None:intergenic |
| GGACCTGAAAGATGAAGTGC+TGG | 0.542953 | 7.3:-3364136 | MS.gene072458:CDS |
| TGTGGTGCCATGTAGGGATG+GGG | 0.546062 | 7.3:+3363964 | None:intergenic |
| ACTTGGGAGGCATGCTGAGG+TGG | 0.548128 | 7.3:+3364048 | None:intergenic |
| ATCAGCCAAACCAAATGACT+GGG | 0.550264 | 7.3:-3364593 | MS.gene072458:CDS |
| GACACCAGCAGTTCCAACTT+GGG | 0.552393 | 7.3:+3364032 | None:intergenic |
| AAGCACCTGTCATATTTGCA+AGG | 0.553287 | 7.3:-3364308 | MS.gene072458:CDS |
| CAGTAAGGAAGAGCATCAGC+AGG | 0.560205 | 7.3:+3364078 | None:intergenic |
| CAGGCCCTTGCAAATATGAC+AGG | 0.560856 | 7.3:+3364303 | None:intergenic |
| TCAGCAGCCCCATCCCTACA+TGG | 0.562305 | 7.3:-3363971 | MS.gene072458:CDS |
| TCCTTGCCAGAGGAAGGCTG+TGG | 0.564697 | 7.3:+3364379 | None:intergenic |
| CAAAACAGAATGGATCATCA+AGG | 0.570283 | 7.3:-3364684 | None:intergenic |
| AGCATCTAGTGATCTGGAGA+TGG | 0.574668 | 7.3:+3363910 | None:intergenic |
| ATATTGCTGCTGCAATCACT+AGG | 0.575052 | 7.3:-3364200 | MS.gene072458:CDS |
| GAAGATCATGAAGGCTGATG+AGG | 0.575398 | 7.3:-3364352 | MS.gene072458:CDS |
| TGAGGTGGCATGTAGCAGTA+AGG | 0.584291 | 7.3:+3364063 | None:intergenic |
| ACCACAGCCTTCCTCTGGCA+AGG | 0.585880 | 7.3:-3364380 | MS.gene072458:CDS |
| AGCTCCAGCAGGTTGACCAG+TGG | 0.593284 | 7.3:+3364530 | None:intergenic |
| CATAATGGGAAAGCCTGTGA+TGG | 0.593370 | 7.3:-3364010 | MS.gene072458:CDS |
| CACGAGGCACAATGTCAACC+AGG | 0.593690 | 7.3:+3364160 | None:intergenic |
| ACAACCAGAATCCGCAAATG+GGG | 0.594889 | 7.3:-3364659 | MS.gene072458:CDS |
| ATCTAGTGATCTGGAGATGG+TGG | 0.605869 | 7.3:+3363913 | None:intergenic |
| CTCCAATATGAACATCTCAC+AGG | 0.609517 | 7.3:+3364284 | None:intergenic |
| TGATATGGGTTAGATCCGTA+CGG | 0.617785 | 7.3:+3364612 | None:intergenic |
| AGCGGCAGTCAAATGCCGTA+CGG | 0.619913 | 7.3:-3364627 | MS.gene072458:CDS |
| TGATGTAACAACGGATCCTG+GGG | 0.620797 | 7.3:+3364569 | None:intergenic |
| AGCACCTGTCATATTTGCAA+GGG | 0.622434 | 7.3:-3364307 | MS.gene072458:CDS |
| ATCTTCTTGATCCTTGCCAG+AGG | 0.624577 | 7.3:+3364369 | None:intergenic |
| AAAACAGAATGGATCATCAA+GGG | 0.625548 | 7.3:-3364683 | None:intergenic |
| ACCAGCAGTTCCAACTTGGG+AGG | 0.637100 | 7.3:+3364035 | None:intergenic |
| AGTGTGGTTCCATGAGCGCA+GGG | 0.637592 | 7.3:+3364257 | None:intergenic |
| CCTACATGGCACCACAAATG+TGG | 0.644640 | 7.3:-3363957 | MS.gene072458:CDS |
| GATGGTGGTCGCTGTTCCGG+AGG | 0.649506 | 7.3:+3363928 | None:intergenic |
| CCAACTTGGGAGGCATGCTG+AGG | 0.657795 | 7.3:+3364045 | None:intergenic |
| TCATCTTTCAGGTCCTCACG+AGG | 0.665344 | 7.3:+3364144 | None:intergenic |
| AAGGATCAAGAAGATCATGA+AGG | 0.667741 | 7.3:-3364361 | MS.gene072458:CDS |
| TCCGTTGTTACATCAGTTGG+GGG | 0.670764 | 7.3:-3364561 | MS.gene072458:CDS |
| GGTTGACATTGTGCCTCGTG+AGG | 0.672349 | 7.3:-3364157 | MS.gene072458:CDS |
| CAACCAGAATCCGCAAATGG+GGG | 0.676007 | 7.3:-3364658 | MS.gene072458:CDS |
| ACACTGAAGAGAACAAAAGG+AGG | 0.682027 | 7.3:-3364239 | MS.gene072458:CDS |
| GTGCTGGCTTCAATTCCAAG+AGG | 0.714242 | 7.3:-3364120 | MS.gene072458:CDS |
| TCAGCCAAACCAAATGACTG+GGG | 0.740826 | 7.3:-3364592 | MS.gene072458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAGGATCAAGAAGATCATGA+AGG | - | chr7.3:3364229-3364248 | MS.gene072458:CDS | 35.0% | |
| ! | CAGTAACCTTTTCAATTTCC+TGG | + | chr7.3:3364181-3364200 | None:intergenic | 35.0% |
| ! | GACTGATATCTTTGATTTCC+TGG | - | chr7.3:3364412-3364431 | MS.gene072458:CDS | 35.0% |
| !! | TCATTTGGTTTGGCTGATAT+GGG | + | chr7.3:3363995-3364014 | None:intergenic | 35.0% |
| AAGCACCTGTCATATTTGCA+AGG | - | chr7.3:3364282-3364301 | MS.gene072458:CDS | 40.0% | |
| ACACTGAAGAGAACAAAAGG+AGG | - | chr7.3:3364351-3364370 | MS.gene072458:CDS | 40.0% | |
| ACCACACTGAAGAGAACAAA+AGG | - | chr7.3:3364348-3364367 | MS.gene072458:CDS | 40.0% | |
| AGCACCTGTCATATTTGCAA+GGG | - | chr7.3:3364283-3364302 | MS.gene072458:CDS | 40.0% | |
| ATATTGCTGCTGCAATCACT+AGG | - | chr7.3:3364390-3364409 | MS.gene072458:CDS | 40.0% | |
| ATCAGCCAAACCAAATGACT+GGG | - | chr7.3:3363997-3364016 | MS.gene072458:CDS | 40.0% | |
| ATCCGTTGTTACATCAGTTG+GGG | - | chr7.3:3364028-3364047 | MS.gene072458:CDS | 40.0% | |
| CCAGTACCAGGAAATTGAAA+AGG | - | chr7.3:3364172-3364191 | MS.gene072458:CDS | 40.0% | |
| CTCCAATATGAACATCTCAC+AGG | + | chr7.3:3364309-3364328 | None:intergenic | 40.0% | |
| GATCCGTTGTTACATCAGTT+GGG | - | chr7.3:3364027-3364046 | MS.gene072458:CDS | 40.0% | |
| TATCAGCCAAACCAAATGAC+TGG | - | chr7.3:3363996-3364015 | MS.gene072458:CDS | 40.0% | |
| ! | CCTTTTCAATTTCCTGGTAC+TGG | + | chr7.3:3364175-3364194 | None:intergenic | 40.0% |
| ! | TCCTTTTGTTCTCTTCAGTG+TGG | + | chr7.3:3364352-3364371 | None:intergenic | 40.0% |
| !! | GTCATTTGGTTTGGCTGATA+TGG | + | chr7.3:3363996-3364015 | None:intergenic | 40.0% |
| !! | TGATATGGGTTAGATCCGTA+CGG | + | chr7.3:3363981-3364000 | None:intergenic | 40.0% |
| AACAACAGCTGCAATCCTTC+TGG | - | chr7.3:3364144-3364163 | MS.gene072458:CDS | 45.0% | |
| AAGCCAGCACTTCATCTTTC+AGG | + | chr7.3:3364460-3364479 | None:intergenic | 45.0% | |
| ACAACCAGAATCCGCAAATG+GGG | - | chr7.3:3363931-3363950 | MS.gene072458:CDS | 45.0% | |
| ACTGATGTAACAACGGATCC+TGG | + | chr7.3:3364026-3364045 | None:intergenic | 45.0% | |
| ATCTTCTTGATCCTTGCCAG+AGG | + | chr7.3:3364224-3364243 | None:intergenic | 45.0% | |
| CACAACCAGAATCCGCAAAT+GGG | - | chr7.3:3363930-3363949 | MS.gene072458:CDS | 45.0% | |
| CTGATGTAACAACGGATCCT+GGG | + | chr7.3:3364025-3364044 | None:intergenic | 45.0% | |
| GAAGATCATGAAGGCTGATG+AGG | - | chr7.3:3364238-3364257 | MS.gene072458:CDS | 45.0% | |
| GCTGCTGAGCATACATGTTT+GGG | + | chr7.3:3364607-3364626 | None:intergenic | 45.0% | |
| GGATCCGTTGTTACATCAGT+TGG | - | chr7.3:3364026-3364045 | MS.gene072458:CDS | 45.0% | |
| GGCCTGTGAGATGTTCATAT+TGG | - | chr7.3:3364304-3364323 | MS.gene072458:CDS | 45.0% | |
| TACATGTTTGGGTCCATCAC+AGG | + | chr7.3:3364596-3364615 | None:intergenic | 45.0% | |
| TCAGCCAAACCAAATGACTG+GGG | - | chr7.3:3363998-3364017 | MS.gene072458:CDS | 45.0% | |
| TCCGTTGTTACATCAGTTGG+GGG | - | chr7.3:3364029-3364048 | MS.gene072458:CDS | 45.0% | |
| TGATGTAACAACGGATCCTG+GGG | + | chr7.3:3364024-3364043 | None:intergenic | 45.0% | |
| ! | CATAATGGGAAAGCCTGTGA+TGG | - | chr7.3:3364580-3364599 | MS.gene072458:CDS | 45.0% |
| !! | CACATTTGTGGTGCCATGTA+GGG | + | chr7.3:3364635-3364654 | None:intergenic | 45.0% |
| !! | GGAACTGCTGGTGTCATAAT+GGG | - | chr7.3:3364566-3364585 | MS.gene072458:CDS | 45.0% |
| !! | TGGAACTGCTGGTGTCATAA+TGG | - | chr7.3:3364565-3364584 | MS.gene072458:CDS | 45.0% |
| AATCCGCAAATGGGGGTTGT+CGG | - | chr7.3:3363939-3363958 | MS.gene072458:CDS | 50.0% | |
| AGAGGAACAATGCCTGTTGC+TGG | - | chr7.3:3364488-3364507 | MS.gene072458:CDS | 50.0% | |
| CAACCAGAATCCGCAAATGG+GGG | - | chr7.3:3363932-3363951 | MS.gene072458:CDS | 50.0% | |
| CAGGCCCTTGCAAATATGAC+AGG | + | chr7.3:3364290-3364309 | None:intergenic | 50.0% | |
| CCTACATGGCACCACAAATG+TGG | - | chr7.3:3364633-3364652 | MS.gene072458:CDS | 50.0% | |
| CTTCTGGTCAAACCAGTACC+AGG | - | chr7.3:3364160-3364179 | MS.gene072458:CDS | 50.0% | |
| GACACCAGCAGTTCCAACTT+GGG | + | chr7.3:3364561-3364580 | None:intergenic | 50.0% | |
| GCACAACCAGAATCCGCAAA+TGG | - | chr7.3:3363929-3363948 | MS.gene072458:CDS | 50.0% | |
| GCCCCCAACTGATGTAACAA+CGG | + | chr7.3:3364033-3364052 | None:intergenic | 50.0% | |
| GGACCTGAAAGATGAAGTGC+TGG | - | chr7.3:3364454-3364473 | MS.gene072458:CDS | 50.0% | |
| GGCTGCTGAGCATACATGTT+TGG | + | chr7.3:3364608-3364627 | None:intergenic | 50.0% | |
| TCTTGATCCTTGCCAGAGGA+AGG | + | chr7.3:3364220-3364239 | None:intergenic | 50.0% | |
| TGACACCAGCAGTTCCAACT+TGG | + | chr7.3:3364562-3364581 | None:intergenic | 50.0% | |
| TGAGGTGGCATGTAGCAGTA+AGG | + | chr7.3:3364530-3364549 | None:intergenic | 50.0% | |
| ! | GCAACAGGCATTGTTCCTCT+TGG | + | chr7.3:3364488-3364507 | None:intergenic | 50.0% |
| ! | GTTGCTGCTGATGGATATGC+TGG | + | chr7.3:3364112-3364131 | None:intergenic | 50.0% |
| ! | TCATCTTTCAGGTCCTCACG+AGG | + | chr7.3:3364449-3364468 | None:intergenic | 50.0% |
| !! | CAGTAAGGAAGAGCATCAGC+AGG | + | chr7.3:3364515-3364534 | None:intergenic | 50.0% |
| !! | CCACATTTGTGGTGCCATGT+AGG | + | chr7.3:3364636-3364655 | None:intergenic | 50.0% |
| !! | CTGGTACTGGTTTGACCAGA+AGG | + | chr7.3:3364162-3364181 | None:intergenic | 50.0% |
| !! | GTGCTGGCTTCAATTCCAAG+AGG | - | chr7.3:3364470-3364489 | MS.gene072458:CDS | 50.0% |
| !! | TTGTGGTGCCATGTAGGGAT+GGG | + | chr7.3:3364630-3364649 | None:intergenic | 50.0% |
| !! | TTTGTGGTGCCATGTAGGGA+TGG | + | chr7.3:3364631-3364650 | None:intergenic | 50.0% |
| ACAAATGTGGCCACAGCCTC+CGG | - | chr7.3:3364646-3364665 | MS.gene072458:CDS | 55.0% | |
| ACCAGCAGTTCCAACTTGGG+AGG | + | chr7.3:3364558-3364577 | None:intergenic | 55.0% | |
| AGCGGCAGTCAAATGCCGTA+CGG | - | chr7.3:3363963-3363982 | MS.gene072458:CDS | 55.0% | |
| AGTGTGGTTCCATGAGCGCA+GGG | + | chr7.3:3364336-3364355 | None:intergenic | 55.0% | |
| CAAATGGGGGTTGTCGGTAG+CGG | - | chr7.3:3363945-3363964 | MS.gene072458:CDS | 55.0% | |
| CAACCCCCATTTGCGGATTC+TGG | + | chr7.3:3363938-3363957 | None:intergenic | 55.0% | |
| CAAGAACCACAGCCTTCCTC+TGG | - | chr7.3:3364205-3364224 | MS.gene072458:CDS | 55.0% | |
| CACGAGGCACAATGTCAACC+AGG | + | chr7.3:3364433-3364452 | None:intergenic | 55.0% | |
| CTACCGACAACCCCCATTTG+CGG | + | chr7.3:3363945-3363964 | None:intergenic | 55.0% | |
| GGTTGACATTGTGCCTCGTG+AGG | - | chr7.3:3364433-3364452 | MS.gene072458:CDS | 55.0% | |
| GTTGCTGCTGTTGCTGCTGA+TGG | + | chr7.3:3364121-3364140 | None:intergenic | 55.0% | |
| TGGAGTTAACCCTGCGCTCA+TGG | - | chr7.3:3364324-3364343 | MS.gene072458:CDS | 55.0% | |
| !! | TGTGGTGCCATGTAGGGATG+GGG | + | chr7.3:3364629-3364648 | None:intergenic | 55.0% |
| AACCAAATGACTGGGGCCCC+AGG | - | chr7.3:3364005-3364024 | MS.gene072458:CDS | 60.0% | |
| ACCACAGCCTTCCTCTGGCA+AGG | - | chr7.3:3364210-3364229 | MS.gene072458:CDS | 60.0% | |
| ATCCTGGGGCCCCAGTCATT+TGG | + | chr7.3:3364010-3364029 | None:intergenic | 60.0% | |
| CAACCTGCTGGAGCTCAGCT+GGG | - | chr7.3:3364068-3364087 | MS.gene072458:CDS | 60.0% | |
| CAGTCCACTGGTCAACCTGC+TGG | - | chr7.3:3364056-3364075 | MS.gene072458:CDS | 60.0% | |
| CAGTGTGGTTCCATGAGCGC+AGG | + | chr7.3:3364337-3364356 | None:intergenic | 60.0% | |
| CCTCAGCATGCCTCCCAAGT+TGG | - | chr7.3:3364545-3364564 | MS.gene072458:CDS | 60.0% | |
| GCATCAGCAGGACCAGCAAC+AGG | + | chr7.3:3364503-3364522 | None:intergenic | 60.0% | |
| GGAGGCTGTGGCCACATTTG+TGG | + | chr7.3:3364647-3364666 | None:intergenic | 60.0% | |
| GGGGCCCCAGTCATTTGGTT+TGG | + | chr7.3:3364005-3364024 | None:intergenic | 60.0% | |
| TCAACCTGCTGGAGCTCAGC+TGG | - | chr7.3:3364067-3364086 | MS.gene072458:CDS | 60.0% | |
| TCAGCAGCCCCATCCCTACA+TGG | - | chr7.3:3364619-3364638 | MS.gene072458:CDS | 60.0% | |
| TCCTTGCCAGAGGAAGGCTG+TGG | + | chr7.3:3364214-3364233 | None:intergenic | 60.0% | |
| ! | ACTTGGGAGGCATGCTGAGG+TGG | + | chr7.3:3364545-3364564 | None:intergenic | 60.0% |
| ! | AGCTCCAGCAGGTTGACCAG+TGG | + | chr7.3:3364063-3364082 | None:intergenic | 60.0% |
| ! | CCAACTTGGGAGGCATGCTG+AGG | + | chr7.3:3364548-3364567 | None:intergenic | 60.0% |
| ! | GCCTCCCAAGTTGGAACTGC+TGG | - | chr7.3:3364554-3364573 | MS.gene072458:CDS | 60.0% |
| ! | GGAGATGGTGGTCGCTGTTC+CGG | + | chr7.3:3364668-3364687 | None:intergenic | 60.0% |
| TGACCCAGCTGAGCTCCAGC+AGG | + | chr7.3:3364074-3364093 | None:intergenic | 65.0% | |
| ! | GATGGTGGTCGCTGTTCCGG+AGG | + | chr7.3:3364665-3364684 | None:intergenic | 65.0% |
| ! | GTTGGGGGCATGCAGTCCAC+TGG | - | chr7.3:3364044-3364063 | MS.gene072458:CDS | 65.0% |
| GGTCGCTGTTCCGGAGGCTG+TGG | + | chr7.3:3364659-3364678 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3363915 | 3364697 | 3363915 | ID=MS.gene072458 |
| chr7.3 | mRNA | 3363915 | 3364697 | 3363915 | ID=MS.gene072458.t1;Parent=MS.gene072458 |
| chr7.3 | exon | 3363915 | 3364697 | 3363915 | ID=MS.gene072458.t1.exon1;Parent=MS.gene072458.t1 |
| chr7.3 | CDS | 3363915 | 3364697 | 3363915 | ID=cds.MS.gene072458.t1;Parent=MS.gene072458.t1 |
| Gene Sequence |
| Protein sequence |
