Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050860.t1 | XP_024627141.1 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 4.10E-127 | 464.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050860.t1 | Q9ZVL3 | 61.2 | 242 | 62 | 6 | 16 | 256 | 5 | 215 | 2.5e-56 | 220.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050860.t1 | I3TAX9 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 3.0e-127 | 464.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050860.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050859 | MS.gene050860 | 0.974497 | 2.92E-138 | -1.69E-46 |
| MS.gene050860 | MS.gene072458 | 0.832418 | 9.56E-56 | -1.69E-46 |
| MS.gene050860 | MS.gene072460 | 0.964245 | 4.38E-123 | -1.69E-46 |
| MS.gene050860 | MS.gene67561 | 0.987564 | 1.02E-170 | -1.69E-46 |
| MS.gene050860 | MS.gene67611 | 0.942549 | 5.91E-102 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050860.t1 | MTR_7g113680 | 99.615 | 260 | 1 | 0 | 1 | 260 | 52 | 311 | 0.0 | 540 |
| MS.gene050860.t1 | MTR_1g082660 | 83.539 | 243 | 36 | 1 | 1 | 243 | 1 | 239 | 4.58e-140 | 394 |
| MS.gene050860.t1 | MTR_3g099180 | 66.038 | 159 | 39 | 4 | 83 | 238 | 37 | 183 | 1.38e-62 | 196 |
| MS.gene050860.t1 | MTR_3g099180 | 66.038 | 159 | 39 | 4 | 83 | 238 | 37 | 183 | 1.58e-62 | 196 |
| MS.gene050860.t1 | MTR_2g023340 | 49.468 | 188 | 70 | 8 | 82 | 259 | 66 | 238 | 8.70e-53 | 172 |
| MS.gene050860.t1 | MTR_2g081600 | 59.770 | 87 | 34 | 1 | 100 | 185 | 21 | 107 | 2.10e-31 | 112 |
| MS.gene050860.t1 | MTR_2g081630 | 61.446 | 83 | 31 | 1 | 100 | 181 | 21 | 103 | 8.60e-31 | 111 |
| MS.gene050860.t1 | MTR_3g012030 | 39.744 | 78 | 47 | 0 | 102 | 179 | 9 | 86 | 1.02e-11 | 63.9 |
| MS.gene050860.t1 | MTR_8g041420 | 37.179 | 78 | 49 | 0 | 102 | 179 | 9 | 86 | 1.90e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050860.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene050860.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene050860.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene050860.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene050860.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene050860.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene050860.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene050860.t1 | AT3G48590 | 68.790 | 157 | 44 | 3 | 83 | 238 | 47 | 199 | 1.70e-70 | 216 |
| MS.gene050860.t1 | AT5G63470 | 68.987 | 158 | 45 | 4 | 83 | 238 | 60 | 215 | 2.00e-67 | 209 |
| MS.gene050860.t1 | AT5G63470 | 68.987 | 158 | 45 | 4 | 83 | 238 | 60 | 215 | 2.00e-67 | 209 |
| MS.gene050860.t1 | AT1G56170 | 75.758 | 132 | 25 | 3 | 80 | 209 | 55 | 181 | 1.31e-66 | 205 |
| MS.gene050860.t1 | AT1G56170 | 75.758 | 132 | 25 | 3 | 80 | 209 | 55 | 181 | 1.31e-66 | 205 |
| MS.gene050860.t1 | AT5G50480 | 49.123 | 171 | 63 | 5 | 79 | 248 | 35 | 182 | 2.66e-46 | 154 |
| MS.gene050860.t1 | AT5G27910 | 45.349 | 172 | 72 | 8 | 77 | 248 | 15 | 164 | 4.55e-39 | 134 |
| MS.gene050860.t1 | AT5G50490 | 38.889 | 180 | 96 | 4 | 70 | 249 | 8 | 173 | 1.66e-34 | 123 |
| MS.gene050860.t1 | AT5G50470 | 39.560 | 182 | 71 | 8 | 79 | 251 | 44 | 195 | 9.52e-31 | 114 |
| MS.gene050860.t1 | AT5G38140 | 43.269 | 104 | 55 | 2 | 76 | 178 | 44 | 144 | 1.38e-25 | 100 |
| MS.gene050860.t1 | AT3G12480 | 37.179 | 78 | 49 | 0 | 102 | 179 | 9 | 86 | 1.28e-11 | 63.9 |
Find 92 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCAGCACTTCATCTTTC+AGG | 0.158704 | 7.1:-2797284 | None:intergenic |
| GTCATTTGGTTTGGCTGATA+TGG | 0.158964 | 7.1:-2796820 | None:intergenic |
| GACTGATATCTTTGATTTCC+TGG | 0.246183 | 7.1:+2797239 | MS.gene050860:CDS |
| TCAACCTGCTGGAGCTCAGC+TGG | 0.263146 | 7.1:+2796894 | MS.gene050860:CDS |
| GGGGCCCCAGTCATTTGGTT+TGG | 0.316348 | 7.1:-2796829 | None:intergenic |
| GGAGATGGTGGTCGCTGTTC+CGG | 0.343092 | 7.1:-2797492 | None:intergenic |
| GGCTGCTGAGCATACATGTT+TGG | 0.345011 | 7.1:-2797432 | None:intergenic |
| GCCTCCCAAGTTGGAACTGC+TGG | 0.356093 | 7.1:+2797381 | MS.gene050860:CDS |
| GATCCGTTGTTACATCAGTT+GGG | 0.366704 | 7.1:+2796854 | MS.gene050860:CDS |
| ATCCTGGGGCCCCAGTCATT+TGG | 0.379289 | 7.1:-2796834 | None:intergenic |
| TCATTTGGTTTGGCTGATAT+GGG | 0.380613 | 7.1:-2796819 | None:intergenic |
| ACTGATGTAACAACGGATCC+TGG | 0.389880 | 7.1:-2796850 | None:intergenic |
| TGGAACTGCTGGTGTCATAA+TGG | 0.411463 | 7.1:+2797392 | MS.gene050860:CDS |
| CACAACCAGAATCCGCAAAT+GGG | 0.411828 | 7.1:+2796757 | MS.gene050860:CDS |
| AGAGGAACAATGCCTGTTGC+TGG | 0.417994 | 7.1:+2797315 | MS.gene050860:CDS |
| GGATCCGTTGTTACATCAGT+TGG | 0.426256 | 7.1:+2796853 | MS.gene050860:CDS |
| AACAACAGCTGCAATCCTTC+TGG | 0.435091 | 7.1:+2796971 | MS.gene050860:CDS |
| GCTGCTGAGCATACATGTTT+GGG | 0.435445 | 7.1:-2797431 | None:intergenic |
| CATCTCAGCATCTAGTGATC+TGG | 0.437549 | 7.1:-2797513 | None:intergenic |
| CAGTGTGGTTCCATGAGCGC+AGG | 0.449372 | 7.1:-2797161 | None:intergenic |
| ACAAATGTGGCCACAGCCTC+CGG | 0.450073 | 7.1:+2797473 | MS.gene050860:CDS |
| GCACAACCAGAATCCGCAAA+TGG | 0.451270 | 7.1:+2796756 | MS.gene050860:CDS |
| CAAGAACCACAGCCTTCCTC+TGG | 0.452736 | 7.1:+2797032 | MS.gene050860:CDS |
| GCATCAGCAGGACCAGCAAC+AGG | 0.455014 | 7.1:-2797327 | None:intergenic |
| GTTGCTGCTGTTGCTGCTGA+TGG | 0.455992 | 7.1:-2796945 | None:intergenic |
| GGCCTGTGAGATGTTCATAT+TGG | 0.456864 | 7.1:+2797131 | MS.gene050860:CDS |
| TGGAGTTAACCCTGCGCTCA+TGG | 0.458619 | 7.1:+2797151 | MS.gene050860:CDS |
| CAGTCCACTGGTCAACCTGC+TGG | 0.464075 | 7.1:+2796883 | MS.gene050860:CDS |
| CACATTTGTGGTGCCATGTA+GGG | 0.465255 | 7.1:-2797459 | None:intergenic |
| CTGATGTAACAACGGATCCT+GGG | 0.469388 | 7.1:-2796849 | None:intergenic |
| CTGGTACTGGTTTGACCAGA+AGG | 0.471679 | 7.1:-2796986 | None:intergenic |
| CAACCTGCTGGAGCTCAGCT+GGG | 0.476224 | 7.1:+2796895 | MS.gene050860:CDS |
| TGACACCAGCAGTTCCAACT+TGG | 0.478083 | 7.1:-2797386 | None:intergenic |
| GGAACTGCTGGTGTCATAAT+GGG | 0.479046 | 7.1:+2797393 | MS.gene050860:CDS |
| TTGTGGTGCCATGTAGGGAT+GGG | 0.484954 | 7.1:-2797454 | None:intergenic |
| AACCAAATGACTGGGGCCCC+AGG | 0.486456 | 7.1:+2796832 | MS.gene050860:CDS |
| TTTGTGGTGCCATGTAGGGA+TGG | 0.486986 | 7.1:-2797455 | None:intergenic |
| GGAGGCTGTGGCCACATTTG+TGG | 0.486993 | 7.1:-2797471 | None:intergenic |
| GCAACAGGCATTGTTCCTCT+TGG | 0.487666 | 7.1:-2797312 | None:intergenic |
| ACCACACTGAAGAGAACAAA+AGG | 0.492883 | 7.1:+2797175 | MS.gene050860:CDS |
| CCACATTTGTGGTGCCATGT+AGG | 0.497501 | 7.1:-2797460 | None:intergenic |
| TACATGTTTGGGTCCATCAC+AGG | 0.504424 | 7.1:-2797420 | None:intergenic |
| TATCAGCCAAACCAAATGAC+TGG | 0.504884 | 7.1:+2796823 | MS.gene050860:CDS |
| CCTCAGCATGCCTCCCAAGT+TGG | 0.514710 | 7.1:+2797372 | MS.gene050860:CDS |
| TCTTGATCCTTGCCAGAGGA+AGG | 0.515769 | 7.1:-2797044 | None:intergenic |
| GTTGCTGCTGATGGATATGC+TGG | 0.517658 | 7.1:-2796936 | None:intergenic |
| TGACCCAGCTGAGCTCCAGC+AGG | 0.517937 | 7.1:-2796898 | None:intergenic |
| CCAGTACCAGGAAATTGAAA+AGG | 0.518655 | 7.1:+2796999 | MS.gene050860:CDS |
| CTTCTGGTCAAACCAGTACC+AGG | 0.521956 | 7.1:+2796987 | MS.gene050860:CDS |
| ATCCGTTGTTACATCAGTTG+GGG | 0.531831 | 7.1:+2796855 | MS.gene050860:CDS |
| GGTCGCTGTTCCGGAGGCTG+TGG | 0.539229 | 7.1:-2797483 | None:intergenic |
| GGACCTGAAAGATGAAGTGC+TGG | 0.542953 | 7.1:+2797281 | MS.gene050860:CDS |
| TGTGGTGCCATGTAGGGATG+GGG | 0.546062 | 7.1:-2797453 | None:intergenic |
| ACTTGGGAGGCATGCTGAGG+TGG | 0.548128 | 7.1:-2797369 | None:intergenic |
| ATCAGCCAAACCAAATGACT+GGG | 0.550264 | 7.1:+2796824 | MS.gene050860:CDS |
| GACACCAGCAGTTCCAACTT+GGG | 0.552393 | 7.1:-2797385 | None:intergenic |
| AAGCACCTGTCATATTTGCA+AGG | 0.553287 | 7.1:+2797109 | MS.gene050860:CDS |
| CAGTAAGGAAGAGCATCAGC+AGG | 0.560205 | 7.1:-2797339 | None:intergenic |
| CAGGCCCTTGCAAATATGAC+AGG | 0.560856 | 7.1:-2797114 | None:intergenic |
| TCAGCAGCCCCATCCCTACA+TGG | 0.562305 | 7.1:+2797446 | MS.gene050860:CDS |
| TCCTTGCCAGAGGAAGGCTG+TGG | 0.564697 | 7.1:-2797038 | None:intergenic |
| CAAAACAGAATGGATCATCA+AGG | 0.570283 | 7.1:+2796733 | None:intergenic |
| AGCATCTAGTGATCTGGAGA+TGG | 0.574668 | 7.1:-2797507 | None:intergenic |
| ATATTGCTGCTGCAATCACT+AGG | 0.575052 | 7.1:+2797217 | MS.gene050860:CDS |
| GAAGATCATGAAGGCTGATG+AGG | 0.575398 | 7.1:+2797065 | MS.gene050860:CDS |
| TGAGGTGGCATGTAGCAGTA+AGG | 0.584291 | 7.1:-2797354 | None:intergenic |
| ACCACAGCCTTCCTCTGGCA+AGG | 0.585880 | 7.1:+2797037 | MS.gene050860:CDS |
| AGCTCCAGCAGGTTGACCAG+TGG | 0.593284 | 7.1:-2796887 | None:intergenic |
| CATAATGGGAAAGCCTGTGA+TGG | 0.593370 | 7.1:+2797407 | MS.gene050860:CDS |
| CACGAGGCACAATGTCAACC+AGG | 0.593690 | 7.1:-2797257 | None:intergenic |
| ACAACCAGAATCCGCAAATG+GGG | 0.594889 | 7.1:+2796758 | MS.gene050860:CDS |
| ATCTAGTGATCTGGAGATGG+TGG | 0.605869 | 7.1:-2797504 | None:intergenic |
| CTCCAATATGAACATCTCAC+AGG | 0.609517 | 7.1:-2797133 | None:intergenic |
| TGATATGGGTTAGATCCGTA+CGG | 0.617785 | 7.1:-2796805 | None:intergenic |
| AGCGGCAGTCAAATGCCGTA+CGG | 0.619913 | 7.1:+2796790 | MS.gene050860:CDS |
| TGATGTAACAACGGATCCTG+GGG | 0.620797 | 7.1:-2796848 | None:intergenic |
| AGCACCTGTCATATTTGCAA+GGG | 0.622434 | 7.1:+2797110 | MS.gene050860:CDS |
| ATCTTCTTGATCCTTGCCAG+AGG | 0.624577 | 7.1:-2797048 | None:intergenic |
| AAAACAGAATGGATCATCAA+GGG | 0.625548 | 7.1:+2796734 | None:intergenic |
| ACCAGCAGTTCCAACTTGGG+AGG | 0.637100 | 7.1:-2797382 | None:intergenic |
| AGTGTGGTTCCATGAGCGCA+GGG | 0.637592 | 7.1:-2797160 | None:intergenic |
| CCTACATGGCACCACAAATG+TGG | 0.644640 | 7.1:+2797460 | MS.gene050860:CDS |
| GATGGTGGTCGCTGTTCCGG+AGG | 0.649506 | 7.1:-2797489 | None:intergenic |
| CCAACTTGGGAGGCATGCTG+AGG | 0.657795 | 7.1:-2797372 | None:intergenic |
| TCATCTTTCAGGTCCTCACG+AGG | 0.665344 | 7.1:-2797273 | None:intergenic |
| AAGGATCAAGAAGATCATGA+AGG | 0.667741 | 7.1:+2797056 | MS.gene050860:CDS |
| TCCGTTGTTACATCAGTTGG+GGG | 0.670764 | 7.1:+2796856 | MS.gene050860:CDS |
| GGTTGACATTGTGCCTCGTG+AGG | 0.672349 | 7.1:+2797260 | MS.gene050860:CDS |
| CAACCAGAATCCGCAAATGG+GGG | 0.676007 | 7.1:+2796759 | MS.gene050860:CDS |
| ACACTGAAGAGAACAAAAGG+AGG | 0.682027 | 7.1:+2797178 | MS.gene050860:CDS |
| GTGCTGGCTTCAATTCCAAG+AGG | 0.714242 | 7.1:+2797297 | MS.gene050860:CDS |
| TCAGCCAAACCAAATGACTG+GGG | 0.740826 | 7.1:+2796825 | MS.gene050860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAGGATCAAGAAGATCATGA+AGG | + | chr7.1:2797056-2797075 | MS.gene050860:CDS | 35.0% | |
| ! | CAGTAACCTTTTCAATTTCC+TGG | - | chr7.1:2797008-2797027 | None:intergenic | 35.0% |
| ! | GACTGATATCTTTGATTTCC+TGG | + | chr7.1:2797239-2797258 | MS.gene050860:CDS | 35.0% |
| !! | TCATTTGGTTTGGCTGATAT+GGG | - | chr7.1:2796822-2796841 | None:intergenic | 35.0% |
| AAGCACCTGTCATATTTGCA+AGG | + | chr7.1:2797109-2797128 | MS.gene050860:CDS | 40.0% | |
| ACACTGAAGAGAACAAAAGG+AGG | + | chr7.1:2797178-2797197 | MS.gene050860:CDS | 40.0% | |
| ACCACACTGAAGAGAACAAA+AGG | + | chr7.1:2797175-2797194 | MS.gene050860:CDS | 40.0% | |
| AGCACCTGTCATATTTGCAA+GGG | + | chr7.1:2797110-2797129 | MS.gene050860:CDS | 40.0% | |
| ATATTGCTGCTGCAATCACT+AGG | + | chr7.1:2797217-2797236 | MS.gene050860:CDS | 40.0% | |
| ATCAGCCAAACCAAATGACT+GGG | + | chr7.1:2796824-2796843 | MS.gene050860:CDS | 40.0% | |
| ATCCGTTGTTACATCAGTTG+GGG | + | chr7.1:2796855-2796874 | MS.gene050860:CDS | 40.0% | |
| CCAGTACCAGGAAATTGAAA+AGG | + | chr7.1:2796999-2797018 | MS.gene050860:CDS | 40.0% | |
| CTCCAATATGAACATCTCAC+AGG | - | chr7.1:2797136-2797155 | None:intergenic | 40.0% | |
| GATCCGTTGTTACATCAGTT+GGG | + | chr7.1:2796854-2796873 | MS.gene050860:CDS | 40.0% | |
| TATCAGCCAAACCAAATGAC+TGG | + | chr7.1:2796823-2796842 | MS.gene050860:CDS | 40.0% | |
| ! | CCTTTTCAATTTCCTGGTAC+TGG | - | chr7.1:2797002-2797021 | None:intergenic | 40.0% |
| ! | TCCTTTTGTTCTCTTCAGTG+TGG | - | chr7.1:2797179-2797198 | None:intergenic | 40.0% |
| !! | GTCATTTGGTTTGGCTGATA+TGG | - | chr7.1:2796823-2796842 | None:intergenic | 40.0% |
| !! | TGATATGGGTTAGATCCGTA+CGG | - | chr7.1:2796808-2796827 | None:intergenic | 40.0% |
| AACAACAGCTGCAATCCTTC+TGG | + | chr7.1:2796971-2796990 | MS.gene050860:CDS | 45.0% | |
| AAGCCAGCACTTCATCTTTC+AGG | - | chr7.1:2797287-2797306 | None:intergenic | 45.0% | |
| ACAACCAGAATCCGCAAATG+GGG | + | chr7.1:2796758-2796777 | MS.gene050860:CDS | 45.0% | |
| ACTGATGTAACAACGGATCC+TGG | - | chr7.1:2796853-2796872 | None:intergenic | 45.0% | |
| ATCTTCTTGATCCTTGCCAG+AGG | - | chr7.1:2797051-2797070 | None:intergenic | 45.0% | |
| CACAACCAGAATCCGCAAAT+GGG | + | chr7.1:2796757-2796776 | MS.gene050860:CDS | 45.0% | |
| CTGATGTAACAACGGATCCT+GGG | - | chr7.1:2796852-2796871 | None:intergenic | 45.0% | |
| GAAGATCATGAAGGCTGATG+AGG | + | chr7.1:2797065-2797084 | MS.gene050860:CDS | 45.0% | |
| GCTGCTGAGCATACATGTTT+GGG | - | chr7.1:2797434-2797453 | None:intergenic | 45.0% | |
| GGATCCGTTGTTACATCAGT+TGG | + | chr7.1:2796853-2796872 | MS.gene050860:CDS | 45.0% | |
| GGCCTGTGAGATGTTCATAT+TGG | + | chr7.1:2797131-2797150 | MS.gene050860:CDS | 45.0% | |
| TACATGTTTGGGTCCATCAC+AGG | - | chr7.1:2797423-2797442 | None:intergenic | 45.0% | |
| TCAGCCAAACCAAATGACTG+GGG | + | chr7.1:2796825-2796844 | MS.gene050860:CDS | 45.0% | |
| TCCGTTGTTACATCAGTTGG+GGG | + | chr7.1:2796856-2796875 | MS.gene050860:CDS | 45.0% | |
| TGATGTAACAACGGATCCTG+GGG | - | chr7.1:2796851-2796870 | None:intergenic | 45.0% | |
| ! | CATAATGGGAAAGCCTGTGA+TGG | + | chr7.1:2797407-2797426 | MS.gene050860:CDS | 45.0% |
| !! | CACATTTGTGGTGCCATGTA+GGG | - | chr7.1:2797462-2797481 | None:intergenic | 45.0% |
| !! | GGAACTGCTGGTGTCATAAT+GGG | + | chr7.1:2797393-2797412 | MS.gene050860:CDS | 45.0% |
| !! | TGGAACTGCTGGTGTCATAA+TGG | + | chr7.1:2797392-2797411 | MS.gene050860:CDS | 45.0% |
| AATCCGCAAATGGGGGTTGT+CGG | + | chr7.1:2796766-2796785 | MS.gene050860:CDS | 50.0% | |
| AGAGGAACAATGCCTGTTGC+TGG | + | chr7.1:2797315-2797334 | MS.gene050860:CDS | 50.0% | |
| CAACCAGAATCCGCAAATGG+GGG | + | chr7.1:2796759-2796778 | MS.gene050860:CDS | 50.0% | |
| CAGGCCCTTGCAAATATGAC+AGG | - | chr7.1:2797117-2797136 | None:intergenic | 50.0% | |
| CCTACATGGCACCACAAATG+TGG | + | chr7.1:2797460-2797479 | MS.gene050860:CDS | 50.0% | |
| CTTCTGGTCAAACCAGTACC+AGG | + | chr7.1:2796987-2797006 | MS.gene050860:CDS | 50.0% | |
| GACACCAGCAGTTCCAACTT+GGG | - | chr7.1:2797388-2797407 | None:intergenic | 50.0% | |
| GCACAACCAGAATCCGCAAA+TGG | + | chr7.1:2796756-2796775 | MS.gene050860:CDS | 50.0% | |
| GCCCCCAACTGATGTAACAA+CGG | - | chr7.1:2796860-2796879 | None:intergenic | 50.0% | |
| GGACCTGAAAGATGAAGTGC+TGG | + | chr7.1:2797281-2797300 | MS.gene050860:CDS | 50.0% | |
| GGCTGCTGAGCATACATGTT+TGG | - | chr7.1:2797435-2797454 | None:intergenic | 50.0% | |
| TCTTGATCCTTGCCAGAGGA+AGG | - | chr7.1:2797047-2797066 | None:intergenic | 50.0% | |
| TGACACCAGCAGTTCCAACT+TGG | - | chr7.1:2797389-2797408 | None:intergenic | 50.0% | |
| TGAGGTGGCATGTAGCAGTA+AGG | - | chr7.1:2797357-2797376 | None:intergenic | 50.0% | |
| ! | GCAACAGGCATTGTTCCTCT+TGG | - | chr7.1:2797315-2797334 | None:intergenic | 50.0% |
| ! | GTTGCTGCTGATGGATATGC+TGG | - | chr7.1:2796939-2796958 | None:intergenic | 50.0% |
| ! | TCATCTTTCAGGTCCTCACG+AGG | - | chr7.1:2797276-2797295 | None:intergenic | 50.0% |
| !! | CAGTAAGGAAGAGCATCAGC+AGG | - | chr7.1:2797342-2797361 | None:intergenic | 50.0% |
| !! | CCACATTTGTGGTGCCATGT+AGG | - | chr7.1:2797463-2797482 | None:intergenic | 50.0% |
| !! | CTGGTACTGGTTTGACCAGA+AGG | - | chr7.1:2796989-2797008 | None:intergenic | 50.0% |
| !! | GTGCTGGCTTCAATTCCAAG+AGG | + | chr7.1:2797297-2797316 | MS.gene050860:CDS | 50.0% |
| !! | TTGTGGTGCCATGTAGGGAT+GGG | - | chr7.1:2797457-2797476 | None:intergenic | 50.0% |
| !! | TTTGTGGTGCCATGTAGGGA+TGG | - | chr7.1:2797458-2797477 | None:intergenic | 50.0% |
| ACAAATGTGGCCACAGCCTC+CGG | + | chr7.1:2797473-2797492 | MS.gene050860:CDS | 55.0% | |
| ACCAGCAGTTCCAACTTGGG+AGG | - | chr7.1:2797385-2797404 | None:intergenic | 55.0% | |
| AGCGGCAGTCAAATGCCGTA+CGG | + | chr7.1:2796790-2796809 | MS.gene050860:CDS | 55.0% | |
| AGTGTGGTTCCATGAGCGCA+GGG | - | chr7.1:2797163-2797182 | None:intergenic | 55.0% | |
| CAAATGGGGGTTGTCGGTAG+CGG | + | chr7.1:2796772-2796791 | MS.gene050860:CDS | 55.0% | |
| CAACCCCCATTTGCGGATTC+TGG | - | chr7.1:2796765-2796784 | None:intergenic | 55.0% | |
| CAAGAACCACAGCCTTCCTC+TGG | + | chr7.1:2797032-2797051 | MS.gene050860:CDS | 55.0% | |
| CACGAGGCACAATGTCAACC+AGG | - | chr7.1:2797260-2797279 | None:intergenic | 55.0% | |
| CTACCGACAACCCCCATTTG+CGG | - | chr7.1:2796772-2796791 | None:intergenic | 55.0% | |
| GGTTGACATTGTGCCTCGTG+AGG | + | chr7.1:2797260-2797279 | MS.gene050860:CDS | 55.0% | |
| GTTGCTGCTGTTGCTGCTGA+TGG | - | chr7.1:2796948-2796967 | None:intergenic | 55.0% | |
| TGGAGTTAACCCTGCGCTCA+TGG | + | chr7.1:2797151-2797170 | MS.gene050860:CDS | 55.0% | |
| !! | TGTGGTGCCATGTAGGGATG+GGG | - | chr7.1:2797456-2797475 | None:intergenic | 55.0% |
| AACCAAATGACTGGGGCCCC+AGG | + | chr7.1:2796832-2796851 | MS.gene050860:CDS | 60.0% | |
| ACCACAGCCTTCCTCTGGCA+AGG | + | chr7.1:2797037-2797056 | MS.gene050860:CDS | 60.0% | |
| ATCCTGGGGCCCCAGTCATT+TGG | - | chr7.1:2796837-2796856 | None:intergenic | 60.0% | |
| CAACCTGCTGGAGCTCAGCT+GGG | + | chr7.1:2796895-2796914 | MS.gene050860:CDS | 60.0% | |
| CAGTCCACTGGTCAACCTGC+TGG | + | chr7.1:2796883-2796902 | MS.gene050860:CDS | 60.0% | |
| CAGTGTGGTTCCATGAGCGC+AGG | - | chr7.1:2797164-2797183 | None:intergenic | 60.0% | |
| CCTCAGCATGCCTCCCAAGT+TGG | + | chr7.1:2797372-2797391 | MS.gene050860:CDS | 60.0% | |
| GCATCAGCAGGACCAGCAAC+AGG | - | chr7.1:2797330-2797349 | None:intergenic | 60.0% | |
| GGAGGCTGTGGCCACATTTG+TGG | - | chr7.1:2797474-2797493 | None:intergenic | 60.0% | |
| GGGGCCCCAGTCATTTGGTT+TGG | - | chr7.1:2796832-2796851 | None:intergenic | 60.0% | |
| TCAACCTGCTGGAGCTCAGC+TGG | + | chr7.1:2796894-2796913 | MS.gene050860:CDS | 60.0% | |
| TCAGCAGCCCCATCCCTACA+TGG | + | chr7.1:2797446-2797465 | MS.gene050860:CDS | 60.0% | |
| TCCTTGCCAGAGGAAGGCTG+TGG | - | chr7.1:2797041-2797060 | None:intergenic | 60.0% | |
| ! | ACTTGGGAGGCATGCTGAGG+TGG | - | chr7.1:2797372-2797391 | None:intergenic | 60.0% |
| ! | AGCTCCAGCAGGTTGACCAG+TGG | - | chr7.1:2796890-2796909 | None:intergenic | 60.0% |
| ! | CCAACTTGGGAGGCATGCTG+AGG | - | chr7.1:2797375-2797394 | None:intergenic | 60.0% |
| ! | GCCTCCCAAGTTGGAACTGC+TGG | + | chr7.1:2797381-2797400 | MS.gene050860:CDS | 60.0% |
| ! | GGAGATGGTGGTCGCTGTTC+CGG | - | chr7.1:2797495-2797514 | None:intergenic | 60.0% |
| TGACCCAGCTGAGCTCCAGC+AGG | - | chr7.1:2796901-2796920 | None:intergenic | 65.0% | |
| ! | GATGGTGGTCGCTGTTCCGG+AGG | - | chr7.1:2797492-2797511 | None:intergenic | 65.0% |
| ! | GTTGGGGGCATGCAGTCCAC+TGG | + | chr7.1:2796871-2796890 | MS.gene050860:CDS | 65.0% |
| GGTCGCTGTTCCGGAGGCTG+TGG | - | chr7.1:2797486-2797505 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 2796742 | 2797524 | 2796742 | ID=MS.gene050860 |
| chr7.1 | mRNA | 2796742 | 2797524 | 2796742 | ID=MS.gene050860.t1;Parent=MS.gene050860 |
| chr7.1 | exon | 2796742 | 2797524 | 2796742 | ID=MS.gene050860.t1.exon1;Parent=MS.gene050860.t1 |
| chr7.1 | CDS | 2796742 | 2797524 | 2796742 | ID=cds.MS.gene050860.t1;Parent=MS.gene050860.t1 |
| Gene Sequence |
| Protein sequence |
