Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050859.t1 | ABD32395.1 | 99.6 | 240 | 1 | 0 | 1 | 240 | 10 | 249 | 3.30E-115 | 424.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050859.t1 | Q9ZVL3 | 61.6 | 237 | 59 | 6 | 1 | 236 | 10 | 215 | 8.7e-56 | 218.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050859.t1 | I3TAX9 | 99.6 | 240 | 1 | 0 | 1 | 240 | 21 | 260 | 2.4e-115 | 424.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050859.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050859 | MS.gene050860 | 0.974497 | 2.92E-138 | -1.69E-46 |
| MS.gene050859 | MS.gene065061 | 0.805517 | 1.28E-49 | -1.69E-46 |
| MS.gene050859 | MS.gene072458 | 0.812099 | 5.03E-51 | -1.69E-46 |
| MS.gene050859 | MS.gene072460 | 0.956314 | 3.94E-114 | -1.69E-46 |
| MS.gene050859 | MS.gene67561 | 0.980531 | 1.96E-150 | -1.69E-46 |
| MS.gene050859 | MS.gene67611 | 0.949076 | 2.64E-107 | -1.69E-46 |
| MS.gene050859 | MS.gene74977 | 0.804984 | 1.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050859.t1 | MTR_7g113680 | 99.583 | 240 | 1 | 0 | 1 | 240 | 72 | 311 | 0.0 | 499 |
| MS.gene050859.t1 | MTR_1g082660 | 84.234 | 222 | 31 | 1 | 2 | 223 | 22 | 239 | 7.64e-128 | 362 |
| MS.gene050859.t1 | MTR_3g099180 | 66.038 | 159 | 39 | 4 | 63 | 218 | 37 | 183 | 1.31e-62 | 195 |
| MS.gene050859.t1 | MTR_3g099180 | 66.038 | 159 | 39 | 4 | 63 | 218 | 37 | 183 | 1.37e-62 | 195 |
| MS.gene050859.t1 | MTR_2g023340 | 49.468 | 188 | 70 | 8 | 62 | 239 | 66 | 238 | 4.70e-53 | 172 |
| MS.gene050859.t1 | MTR_2g081600 | 59.770 | 87 | 34 | 1 | 80 | 165 | 21 | 107 | 1.61e-31 | 112 |
| MS.gene050859.t1 | MTR_2g081630 | 61.446 | 83 | 31 | 1 | 80 | 161 | 21 | 103 | 6.94e-31 | 110 |
| MS.gene050859.t1 | MTR_3g012030 | 39.744 | 78 | 47 | 0 | 82 | 159 | 9 | 86 | 1.02e-11 | 63.5 |
| MS.gene050859.t1 | MTR_8g041420 | 37.179 | 78 | 49 | 0 | 82 | 159 | 9 | 86 | 2.00e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050859.t1 | AT1G08970 | 64.912 | 228 | 59 | 6 | 1 | 227 | 12 | 219 | 2.12e-87 | 259 |
| MS.gene050859.t1 | AT1G08970 | 64.912 | 228 | 59 | 6 | 1 | 227 | 12 | 219 | 2.12e-87 | 259 |
| MS.gene050859.t1 | AT1G08970 | 64.912 | 228 | 59 | 6 | 1 | 227 | 12 | 219 | 2.12e-87 | 259 |
| MS.gene050859.t1 | AT1G08970 | 64.912 | 228 | 59 | 6 | 1 | 227 | 12 | 219 | 2.12e-87 | 259 |
| MS.gene050859.t1 | AT1G54830 | 64.135 | 237 | 53 | 5 | 1 | 236 | 10 | 215 | 2.06e-86 | 256 |
| MS.gene050859.t1 | AT1G54830 | 64.135 | 237 | 53 | 5 | 1 | 236 | 10 | 215 | 2.06e-86 | 256 |
| MS.gene050859.t1 | AT1G54830 | 64.135 | 237 | 53 | 5 | 1 | 236 | 10 | 215 | 2.06e-86 | 256 |
| MS.gene050859.t1 | AT3G48590 | 68.790 | 157 | 44 | 3 | 63 | 218 | 47 | 199 | 1.15e-70 | 216 |
| MS.gene050859.t1 | AT5G63470 | 68.987 | 158 | 45 | 4 | 63 | 218 | 60 | 215 | 1.40e-67 | 209 |
| MS.gene050859.t1 | AT5G63470 | 68.987 | 158 | 45 | 4 | 63 | 218 | 60 | 215 | 1.40e-67 | 209 |
| MS.gene050859.t1 | AT1G56170 | 74.815 | 135 | 27 | 3 | 60 | 192 | 55 | 184 | 9.42e-67 | 205 |
| MS.gene050859.t1 | AT1G56170 | 74.815 | 135 | 27 | 3 | 60 | 192 | 55 | 184 | 9.42e-67 | 205 |
| MS.gene050859.t1 | AT5G50480 | 51.266 | 158 | 60 | 4 | 59 | 215 | 35 | 176 | 1.28e-46 | 154 |
| MS.gene050859.t1 | AT5G27910 | 45.143 | 175 | 68 | 7 | 57 | 228 | 15 | 164 | 3.67e-39 | 134 |
| MS.gene050859.t1 | AT5G50490 | 38.889 | 180 | 96 | 4 | 50 | 229 | 8 | 173 | 6.80e-35 | 123 |
| MS.gene050859.t1 | AT5G50470 | 39.344 | 183 | 70 | 8 | 59 | 231 | 44 | 195 | 6.47e-31 | 114 |
| MS.gene050859.t1 | AT5G38140 | 43.269 | 104 | 55 | 2 | 56 | 158 | 44 | 144 | 1.19e-25 | 99.8 |
| MS.gene050859.t1 | AT3G12480 | 37.179 | 78 | 49 | 0 | 82 | 159 | 9 | 86 | 1.30e-11 | 63.5 |
Find 86 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCAGCACTTCATCTTTC+AGG | 0.158704 | 7.3:-3332440 | None:intergenic |
| GTCATTTGGTTTGGCTGATA+TGG | 0.158964 | 7.3:-3331976 | None:intergenic |
| GACTGATATCTTTGATTTCC+TGG | 0.246183 | 7.3:+3332395 | MS.gene050859:CDS |
| TCAACCTGCTGGAGCTCAGC+TGG | 0.263146 | 7.3:+3332050 | MS.gene050859:CDS |
| GGGGCCCCAGTCATTTGGTT+TGG | 0.316348 | 7.3:-3331985 | None:intergenic |
| GGAGATGGTGGTCGCTGTTC+CGG | 0.343092 | 7.3:-3332648 | None:intergenic |
| GGCTGCTGAGCATACATGTT+TGG | 0.345011 | 7.3:-3332588 | None:intergenic |
| GCCTCCCAAGTTGGAACTGC+TGG | 0.356093 | 7.3:+3332537 | MS.gene050859:CDS |
| GATCCGTTGTTACATCAGTT+GGG | 0.366704 | 7.3:+3332010 | MS.gene050859:CDS |
| ATCCTGGGGCCCCAGTCATT+TGG | 0.379289 | 7.3:-3331990 | None:intergenic |
| TCATTTGGTTTGGCTGATAT+GGG | 0.380613 | 7.3:-3331975 | None:intergenic |
| ACTGATGTAACAACGGATCC+TGG | 0.389880 | 7.3:-3332006 | None:intergenic |
| TGGAACTGCTGGTGTCATAA+TGG | 0.411463 | 7.3:+3332548 | MS.gene050859:CDS |
| AGAGGAACAATGCCTGTTGC+TGG | 0.417994 | 7.3:+3332471 | MS.gene050859:CDS |
| GGATCCGTTGTTACATCAGT+TGG | 0.426256 | 7.3:+3332009 | MS.gene050859:CDS |
| AACAACAGCTGCAATCCTTC+TGG | 0.435091 | 7.3:+3332127 | MS.gene050859:CDS |
| GCTGCTGAGCATACATGTTT+GGG | 0.435445 | 7.3:-3332587 | None:intergenic |
| CATCTCAGCATCTAGTGATC+TGG | 0.437549 | 7.3:-3332669 | None:intergenic |
| CAGTGTGGTTCCATGAGCGC+AGG | 0.449372 | 7.3:-3332317 | None:intergenic |
| ACAAATGTGGCCACAGCCTC+CGG | 0.450073 | 7.3:+3332629 | MS.gene050859:CDS |
| CAAGAACCACAGCCTTCCTC+TGG | 0.452736 | 7.3:+3332188 | MS.gene050859:CDS |
| GCATCAGCAGGACCAGCAAC+AGG | 0.455014 | 7.3:-3332483 | None:intergenic |
| GTTGCTGCTGTTGCTGCTGA+TGG | 0.455992 | 7.3:-3332101 | None:intergenic |
| GGCCTGTGAGATGTTCATAT+TGG | 0.456864 | 7.3:+3332287 | MS.gene050859:CDS |
| TGGAGTTAACCCTGCGCTCA+TGG | 0.458619 | 7.3:+3332307 | MS.gene050859:CDS |
| CAGTCCACTGGTCAACCTGC+TGG | 0.464075 | 7.3:+3332039 | MS.gene050859:CDS |
| CACATTTGTGGTGCCATGTA+GGG | 0.465255 | 7.3:-3332615 | None:intergenic |
| CTGATGTAACAACGGATCCT+GGG | 0.469388 | 7.3:-3332005 | None:intergenic |
| CTGGTACTGGTTTGACCAGA+AGG | 0.471679 | 7.3:-3332142 | None:intergenic |
| CAACCTGCTGGAGCTCAGCT+GGG | 0.476224 | 7.3:+3332051 | MS.gene050859:CDS |
| TGACACCAGCAGTTCCAACT+TGG | 0.478083 | 7.3:-3332542 | None:intergenic |
| GGAACTGCTGGTGTCATAAT+GGG | 0.479046 | 7.3:+3332549 | MS.gene050859:CDS |
| TTGTGGTGCCATGTAGGGAT+GGG | 0.484954 | 7.3:-3332610 | None:intergenic |
| AACCAAATGACTGGGGCCCC+AGG | 0.486456 | 7.3:+3331988 | MS.gene050859:CDS |
| TTTGTGGTGCCATGTAGGGA+TGG | 0.486986 | 7.3:-3332611 | None:intergenic |
| GGAGGCTGTGGCCACATTTG+TGG | 0.486993 | 7.3:-3332627 | None:intergenic |
| GCAACAGGCATTGTTCCTCT+TGG | 0.487666 | 7.3:-3332468 | None:intergenic |
| ACCACACTGAAGAGAACAAA+AGG | 0.492883 | 7.3:+3332331 | MS.gene050859:CDS |
| CCACATTTGTGGTGCCATGT+AGG | 0.497501 | 7.3:-3332616 | None:intergenic |
| TACATGTTTGGGTCCATCAC+AGG | 0.504424 | 7.3:-3332576 | None:intergenic |
| TATCAGCCAAACCAAATGAC+TGG | 0.504884 | 7.3:+3331979 | MS.gene050859:CDS |
| CCTCAGCATGCCTCCCAAGT+TGG | 0.514710 | 7.3:+3332528 | MS.gene050859:CDS |
| TCTTGATCCTTGCCAGAGGA+AGG | 0.515769 | 7.3:-3332200 | None:intergenic |
| GTTGCTGCTGATGGATATGC+TGG | 0.517658 | 7.3:-3332092 | None:intergenic |
| TGACCCAGCTGAGCTCCAGC+AGG | 0.517937 | 7.3:-3332054 | None:intergenic |
| CCAGTACCAGGAAATTGAAA+AGG | 0.518655 | 7.3:+3332155 | MS.gene050859:CDS |
| CTTCTGGTCAAACCAGTACC+AGG | 0.521956 | 7.3:+3332143 | MS.gene050859:CDS |
| ATCCGTTGTTACATCAGTTG+GGG | 0.531831 | 7.3:+3332011 | MS.gene050859:CDS |
| GGTCGCTGTTCCGGAGGCTG+TGG | 0.539229 | 7.3:-3332639 | None:intergenic |
| GGACCTGAAAGATGAAGTGC+TGG | 0.542953 | 7.3:+3332437 | MS.gene050859:CDS |
| TGTGGTGCCATGTAGGGATG+GGG | 0.546062 | 7.3:-3332609 | None:intergenic |
| ACTTGGGAGGCATGCTGAGG+TGG | 0.548128 | 7.3:-3332525 | None:intergenic |
| ATCAGCCAAACCAAATGACT+GGG | 0.550264 | 7.3:+3331980 | MS.gene050859:CDS |
| GACACCAGCAGTTCCAACTT+GGG | 0.552393 | 7.3:-3332541 | None:intergenic |
| AAGCACCTGTCATATTTGCA+AGG | 0.553287 | 7.3:+3332265 | MS.gene050859:CDS |
| CAGTAAGGAAGAGCATCAGC+AGG | 0.560205 | 7.3:-3332495 | None:intergenic |
| CAGGCCCTTGCAAATATGAC+AGG | 0.560856 | 7.3:-3332270 | None:intergenic |
| TCAGCAGCCCCATCCCTACA+TGG | 0.562305 | 7.3:+3332602 | MS.gene050859:CDS |
| TCCTTGCCAGAGGAAGGCTG+TGG | 0.564697 | 7.3:-3332194 | None:intergenic |
| AGCATCTAGTGATCTGGAGA+TGG | 0.574668 | 7.3:-3332663 | None:intergenic |
| ATATTGCTGCTGCAATCACT+AGG | 0.575052 | 7.3:+3332373 | MS.gene050859:CDS |
| GAAGATCATGAAGGCTGATG+AGG | 0.575398 | 7.3:+3332221 | MS.gene050859:CDS |
| TGAGGTGGCATGTAGCAGTA+AGG | 0.584291 | 7.3:-3332510 | None:intergenic |
| ACCACAGCCTTCCTCTGGCA+AGG | 0.585880 | 7.3:+3332193 | MS.gene050859:CDS |
| AGCTCCAGCAGGTTGACCAG+TGG | 0.593284 | 7.3:-3332043 | None:intergenic |
| CATAATGGGAAAGCCTGTGA+TGG | 0.593370 | 7.3:+3332563 | MS.gene050859:CDS |
| CACGAGGCACAATGTCAACC+AGG | 0.593690 | 7.3:-3332413 | None:intergenic |
| ATCTAGTGATCTGGAGATGG+TGG | 0.605869 | 7.3:-3332660 | None:intergenic |
| CTCCAATATGAACATCTCAC+AGG | 0.609517 | 7.3:-3332289 | None:intergenic |
| GCGGCAGTCCAAATGCCGTA+CGG | 0.617493 | 7.3:+3331946 | None:intergenic |
| TGATATGGGTTAGATCCGTA+CGG | 0.617785 | 7.3:-3331961 | None:intergenic |
| TGATGTAACAACGGATCCTG+GGG | 0.620797 | 7.3:-3332004 | None:intergenic |
| AGCACCTGTCATATTTGCAA+GGG | 0.622434 | 7.3:+3332266 | MS.gene050859:CDS |
| ATCTTCTTGATCCTTGCCAG+AGG | 0.624577 | 7.3:-3332204 | None:intergenic |
| ACCAGCAGTTCCAACTTGGG+AGG | 0.637100 | 7.3:-3332538 | None:intergenic |
| AGTGTGGTTCCATGAGCGCA+GGG | 0.637592 | 7.3:-3332316 | None:intergenic |
| CCTACATGGCACCACAAATG+TGG | 0.644640 | 7.3:+3332616 | MS.gene050859:CDS |
| GATGGTGGTCGCTGTTCCGG+AGG | 0.649506 | 7.3:-3332645 | None:intergenic |
| CCAACTTGGGAGGCATGCTG+AGG | 0.657795 | 7.3:-3332528 | None:intergenic |
| TCATCTTTCAGGTCCTCACG+AGG | 0.665344 | 7.3:-3332429 | None:intergenic |
| AAGGATCAAGAAGATCATGA+AGG | 0.667741 | 7.3:+3332212 | MS.gene050859:CDS |
| TCCGTTGTTACATCAGTTGG+GGG | 0.670764 | 7.3:+3332012 | MS.gene050859:CDS |
| GGTTGACATTGTGCCTCGTG+AGG | 0.672349 | 7.3:+3332416 | MS.gene050859:CDS |
| ACACTGAAGAGAACAAAAGG+AGG | 0.682027 | 7.3:+3332334 | MS.gene050859:CDS |
| GTGCTGGCTTCAATTCCAAG+AGG | 0.714242 | 7.3:+3332453 | MS.gene050859:CDS |
| TCAGCCAAACCAAATGACTG+GGG | 0.740826 | 7.3:+3331981 | MS.gene050859:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAGGATCAAGAAGATCATGA+AGG | + | chr7.3:3332212-3332231 | MS.gene050859:CDS | 35.0% | |
| ! | CAGTAACCTTTTCAATTTCC+TGG | - | chr7.3:3332164-3332183 | None:intergenic | 35.0% |
| ! | GACTGATATCTTTGATTTCC+TGG | + | chr7.3:3332395-3332414 | MS.gene050859:CDS | 35.0% |
| !! | TCATTTGGTTTGGCTGATAT+GGG | - | chr7.3:3331978-3331997 | None:intergenic | 35.0% |
| AAGCACCTGTCATATTTGCA+AGG | + | chr7.3:3332265-3332284 | MS.gene050859:CDS | 40.0% | |
| ACACTGAAGAGAACAAAAGG+AGG | + | chr7.3:3332334-3332353 | MS.gene050859:CDS | 40.0% | |
| ACCACACTGAAGAGAACAAA+AGG | + | chr7.3:3332331-3332350 | MS.gene050859:CDS | 40.0% | |
| AGCACCTGTCATATTTGCAA+GGG | + | chr7.3:3332266-3332285 | MS.gene050859:CDS | 40.0% | |
| ATATTGCTGCTGCAATCACT+AGG | + | chr7.3:3332373-3332392 | MS.gene050859:CDS | 40.0% | |
| ATCAGCCAAACCAAATGACT+GGG | + | chr7.3:3331980-3331999 | MS.gene050859:CDS | 40.0% | |
| ATCCGTTGTTACATCAGTTG+GGG | + | chr7.3:3332011-3332030 | MS.gene050859:CDS | 40.0% | |
| CCAGTACCAGGAAATTGAAA+AGG | + | chr7.3:3332155-3332174 | MS.gene050859:CDS | 40.0% | |
| CTCCAATATGAACATCTCAC+AGG | - | chr7.3:3332292-3332311 | None:intergenic | 40.0% | |
| GATCCGTTGTTACATCAGTT+GGG | + | chr7.3:3332010-3332029 | MS.gene050859:CDS | 40.0% | |
| TATCAGCCAAACCAAATGAC+TGG | + | chr7.3:3331979-3331998 | MS.gene050859:CDS | 40.0% | |
| ! | CCTTTTCAATTTCCTGGTAC+TGG | - | chr7.3:3332158-3332177 | None:intergenic | 40.0% |
| ! | TCCTTTTGTTCTCTTCAGTG+TGG | - | chr7.3:3332335-3332354 | None:intergenic | 40.0% |
| !! | GTCATTTGGTTTGGCTGATA+TGG | - | chr7.3:3331979-3331998 | None:intergenic | 40.0% |
| !! | TGATATGGGTTAGATCCGTA+CGG | - | chr7.3:3331964-3331983 | None:intergenic | 40.0% |
| AACAACAGCTGCAATCCTTC+TGG | + | chr7.3:3332127-3332146 | MS.gene050859:CDS | 45.0% | |
| AAGCCAGCACTTCATCTTTC+AGG | - | chr7.3:3332443-3332462 | None:intergenic | 45.0% | |
| ACTGATGTAACAACGGATCC+TGG | - | chr7.3:3332009-3332028 | None:intergenic | 45.0% | |
| ATCTTCTTGATCCTTGCCAG+AGG | - | chr7.3:3332207-3332226 | None:intergenic | 45.0% | |
| CTGATGTAACAACGGATCCT+GGG | - | chr7.3:3332008-3332027 | None:intergenic | 45.0% | |
| GAAGATCATGAAGGCTGATG+AGG | + | chr7.3:3332221-3332240 | MS.gene050859:CDS | 45.0% | |
| GCTGCTGAGCATACATGTTT+GGG | - | chr7.3:3332590-3332609 | None:intergenic | 45.0% | |
| GGATCCGTTGTTACATCAGT+TGG | + | chr7.3:3332009-3332028 | MS.gene050859:CDS | 45.0% | |
| GGCCTGTGAGATGTTCATAT+TGG | + | chr7.3:3332287-3332306 | MS.gene050859:CDS | 45.0% | |
| TACATGTTTGGGTCCATCAC+AGG | - | chr7.3:3332579-3332598 | None:intergenic | 45.0% | |
| TCAGCCAAACCAAATGACTG+GGG | + | chr7.3:3331981-3332000 | MS.gene050859:CDS | 45.0% | |
| TCCGTTGTTACATCAGTTGG+GGG | + | chr7.3:3332012-3332031 | MS.gene050859:CDS | 45.0% | |
| TGATGTAACAACGGATCCTG+GGG | - | chr7.3:3332007-3332026 | None:intergenic | 45.0% | |
| ! | CATAATGGGAAAGCCTGTGA+TGG | + | chr7.3:3332563-3332582 | MS.gene050859:CDS | 45.0% |
| !! | CACATTTGTGGTGCCATGTA+GGG | - | chr7.3:3332618-3332637 | None:intergenic | 45.0% |
| !! | GGAACTGCTGGTGTCATAAT+GGG | + | chr7.3:3332549-3332568 | MS.gene050859:CDS | 45.0% |
| !! | TGGAACTGCTGGTGTCATAA+TGG | + | chr7.3:3332548-3332567 | MS.gene050859:CDS | 45.0% |
| AGAGGAACAATGCCTGTTGC+TGG | + | chr7.3:3332471-3332490 | MS.gene050859:CDS | 50.0% | |
| CAGGCCCTTGCAAATATGAC+AGG | - | chr7.3:3332273-3332292 | None:intergenic | 50.0% | |
| CCTACATGGCACCACAAATG+TGG | + | chr7.3:3332616-3332635 | MS.gene050859:CDS | 50.0% | |
| CTTCTGGTCAAACCAGTACC+AGG | + | chr7.3:3332143-3332162 | MS.gene050859:CDS | 50.0% | |
| GACACCAGCAGTTCCAACTT+GGG | - | chr7.3:3332544-3332563 | None:intergenic | 50.0% | |
| GCCCCCAACTGATGTAACAA+CGG | - | chr7.3:3332016-3332035 | None:intergenic | 50.0% | |
| GGACCTGAAAGATGAAGTGC+TGG | + | chr7.3:3332437-3332456 | MS.gene050859:CDS | 50.0% | |
| GGCTGCTGAGCATACATGTT+TGG | - | chr7.3:3332591-3332610 | None:intergenic | 50.0% | |
| TCTTGATCCTTGCCAGAGGA+AGG | - | chr7.3:3332203-3332222 | None:intergenic | 50.0% | |
| TGACACCAGCAGTTCCAACT+TGG | - | chr7.3:3332545-3332564 | None:intergenic | 50.0% | |
| TGAGGTGGCATGTAGCAGTA+AGG | - | chr7.3:3332513-3332532 | None:intergenic | 50.0% | |
| ! | GCAACAGGCATTGTTCCTCT+TGG | - | chr7.3:3332471-3332490 | None:intergenic | 50.0% |
| ! | GTTGCTGCTGATGGATATGC+TGG | - | chr7.3:3332095-3332114 | None:intergenic | 50.0% |
| ! | TCATCTTTCAGGTCCTCACG+AGG | - | chr7.3:3332432-3332451 | None:intergenic | 50.0% |
| !! | CAGTAAGGAAGAGCATCAGC+AGG | - | chr7.3:3332498-3332517 | None:intergenic | 50.0% |
| !! | CCACATTTGTGGTGCCATGT+AGG | - | chr7.3:3332619-3332638 | None:intergenic | 50.0% |
| !! | CTGGTACTGGTTTGACCAGA+AGG | - | chr7.3:3332145-3332164 | None:intergenic | 50.0% |
| !! | GTGCTGGCTTCAATTCCAAG+AGG | + | chr7.3:3332453-3332472 | MS.gene050859:CDS | 50.0% |
| !! | TTGTGGTGCCATGTAGGGAT+GGG | - | chr7.3:3332613-3332632 | None:intergenic | 50.0% |
| !! | TTTGTGGTGCCATGTAGGGA+TGG | - | chr7.3:3332614-3332633 | None:intergenic | 50.0% |
| ACAAATGTGGCCACAGCCTC+CGG | + | chr7.3:3332629-3332648 | MS.gene050859:CDS | 55.0% | |
| ACCAGCAGTTCCAACTTGGG+AGG | - | chr7.3:3332541-3332560 | None:intergenic | 55.0% | |
| AGTGTGGTTCCATGAGCGCA+GGG | - | chr7.3:3332319-3332338 | None:intergenic | 55.0% | |
| CAAGAACCACAGCCTTCCTC+TGG | + | chr7.3:3332188-3332207 | MS.gene050859:CDS | 55.0% | |
| CACGAGGCACAATGTCAACC+AGG | - | chr7.3:3332416-3332435 | None:intergenic | 55.0% | |
| GGTTGACATTGTGCCTCGTG+AGG | + | chr7.3:3332416-3332435 | MS.gene050859:CDS | 55.0% | |
| GTTGCTGCTGTTGCTGCTGA+TGG | - | chr7.3:3332104-3332123 | None:intergenic | 55.0% | |
| TGGAGTTAACCCTGCGCTCA+TGG | + | chr7.3:3332307-3332326 | MS.gene050859:CDS | 55.0% | |
| !! | TGTGGTGCCATGTAGGGATG+GGG | - | chr7.3:3332612-3332631 | None:intergenic | 55.0% |
| AACCAAATGACTGGGGCCCC+AGG | + | chr7.3:3331988-3332007 | MS.gene050859:CDS | 60.0% | |
| ACCACAGCCTTCCTCTGGCA+AGG | + | chr7.3:3332193-3332212 | MS.gene050859:CDS | 60.0% | |
| ATCCTGGGGCCCCAGTCATT+TGG | - | chr7.3:3331993-3332012 | None:intergenic | 60.0% | |
| CAACCTGCTGGAGCTCAGCT+GGG | + | chr7.3:3332051-3332070 | MS.gene050859:CDS | 60.0% | |
| CAGTCCACTGGTCAACCTGC+TGG | + | chr7.3:3332039-3332058 | MS.gene050859:CDS | 60.0% | |
| CAGTGTGGTTCCATGAGCGC+AGG | - | chr7.3:3332320-3332339 | None:intergenic | 60.0% | |
| CCTCAGCATGCCTCCCAAGT+TGG | + | chr7.3:3332528-3332547 | MS.gene050859:CDS | 60.0% | |
| GCATCAGCAGGACCAGCAAC+AGG | - | chr7.3:3332486-3332505 | None:intergenic | 60.0% | |
| GGAGGCTGTGGCCACATTTG+TGG | - | chr7.3:3332630-3332649 | None:intergenic | 60.0% | |
| GGGGCCCCAGTCATTTGGTT+TGG | - | chr7.3:3331988-3332007 | None:intergenic | 60.0% | |
| TCAACCTGCTGGAGCTCAGC+TGG | + | chr7.3:3332050-3332069 | MS.gene050859:CDS | 60.0% | |
| TCAGCAGCCCCATCCCTACA+TGG | + | chr7.3:3332602-3332621 | MS.gene050859:CDS | 60.0% | |
| TCCTTGCCAGAGGAAGGCTG+TGG | - | chr7.3:3332197-3332216 | None:intergenic | 60.0% | |
| ! | ACTTGGGAGGCATGCTGAGG+TGG | - | chr7.3:3332528-3332547 | None:intergenic | 60.0% |
| ! | AGCTCCAGCAGGTTGACCAG+TGG | - | chr7.3:3332046-3332065 | None:intergenic | 60.0% |
| ! | CCAACTTGGGAGGCATGCTG+AGG | - | chr7.3:3332531-3332550 | None:intergenic | 60.0% |
| ! | GCCTCCCAAGTTGGAACTGC+TGG | + | chr7.3:3332537-3332556 | MS.gene050859:CDS | 60.0% |
| ! | GGAGATGGTGGTCGCTGTTC+CGG | - | chr7.3:3332651-3332670 | None:intergenic | 60.0% |
| TGACCCAGCTGAGCTCCAGC+AGG | - | chr7.3:3332057-3332076 | None:intergenic | 65.0% | |
| ! | GATGGTGGTCGCTGTTCCGG+AGG | - | chr7.3:3332648-3332667 | None:intergenic | 65.0% |
| ! | GTTGGGGGCATGCAGTCCAC+TGG | + | chr7.3:3332027-3332046 | MS.gene050859:CDS | 65.0% |
| GGTCGCTGTTCCGGAGGCTG+TGG | - | chr7.3:3332642-3332661 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3331958 | 3332680 | 3331958 | ID=MS.gene050859 |
| chr7.3 | mRNA | 3331958 | 3332680 | 3331958 | ID=MS.gene050859.t1;Parent=MS.gene050859 |
| chr7.3 | exon | 3331958 | 3332680 | 3331958 | ID=MS.gene050859.t1.exon1;Parent=MS.gene050859.t1 |
| chr7.3 | CDS | 3331958 | 3332680 | 3331958 | ID=cds.MS.gene050859.t1;Parent=MS.gene050859.t1 |
| Gene Sequence |
| Protein sequence |
