Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072460.t1 | XP_024627141.1 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 4.10E-127 | 464.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072460.t1 | Q9ZVL3 | 61.2 | 242 | 62 | 6 | 16 | 256 | 5 | 215 | 2.5e-56 | 220.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072460.t1 | I3TAX9 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 3.0e-127 | 464.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene072460.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050859 | MS.gene072460 | 0.956314 | 3.94E-114 | -1.69E-46 |
| MS.gene050860 | MS.gene072460 | 0.964245 | 4.38E-123 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072460.t1 | MTR_7g113680 | 99.615 | 260 | 1 | 0 | 1 | 260 | 52 | 311 | 0.0 | 540 |
| MS.gene072460.t1 | MTR_1g082660 | 83.539 | 243 | 36 | 1 | 1 | 243 | 1 | 239 | 4.58e-140 | 394 |
| MS.gene072460.t1 | MTR_3g099180 | 66.038 | 159 | 39 | 4 | 83 | 238 | 37 | 183 | 1.38e-62 | 196 |
| MS.gene072460.t1 | MTR_3g099180 | 66.038 | 159 | 39 | 4 | 83 | 238 | 37 | 183 | 1.58e-62 | 196 |
| MS.gene072460.t1 | MTR_2g023340 | 49.468 | 188 | 70 | 8 | 82 | 259 | 66 | 238 | 8.70e-53 | 172 |
| MS.gene072460.t1 | MTR_2g081600 | 59.770 | 87 | 34 | 1 | 100 | 185 | 21 | 107 | 2.10e-31 | 112 |
| MS.gene072460.t1 | MTR_2g081630 | 61.446 | 83 | 31 | 1 | 100 | 181 | 21 | 103 | 8.60e-31 | 111 |
| MS.gene072460.t1 | MTR_3g012030 | 39.744 | 78 | 47 | 0 | 102 | 179 | 9 | 86 | 1.02e-11 | 63.9 |
| MS.gene072460.t1 | MTR_8g041420 | 37.179 | 78 | 49 | 0 | 102 | 179 | 9 | 86 | 1.90e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072460.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene072460.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene072460.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene072460.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene072460.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene072460.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene072460.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene072460.t1 | AT3G48590 | 68.790 | 157 | 44 | 3 | 83 | 238 | 47 | 199 | 1.70e-70 | 216 |
| MS.gene072460.t1 | AT5G63470 | 68.987 | 158 | 45 | 4 | 83 | 238 | 60 | 215 | 2.00e-67 | 209 |
| MS.gene072460.t1 | AT5G63470 | 68.987 | 158 | 45 | 4 | 83 | 238 | 60 | 215 | 2.00e-67 | 209 |
| MS.gene072460.t1 | AT1G56170 | 75.758 | 132 | 25 | 3 | 80 | 209 | 55 | 181 | 1.31e-66 | 205 |
| MS.gene072460.t1 | AT1G56170 | 75.758 | 132 | 25 | 3 | 80 | 209 | 55 | 181 | 1.31e-66 | 205 |
| MS.gene072460.t1 | AT5G50480 | 49.123 | 171 | 63 | 5 | 79 | 248 | 35 | 182 | 2.66e-46 | 154 |
| MS.gene072460.t1 | AT5G27910 | 45.349 | 172 | 72 | 8 | 77 | 248 | 15 | 164 | 4.55e-39 | 134 |
| MS.gene072460.t1 | AT5G50490 | 38.889 | 180 | 96 | 4 | 70 | 249 | 8 | 173 | 1.66e-34 | 123 |
| MS.gene072460.t1 | AT5G50470 | 39.560 | 182 | 71 | 8 | 79 | 251 | 44 | 195 | 9.52e-31 | 114 |
| MS.gene072460.t1 | AT5G38140 | 43.269 | 104 | 55 | 2 | 76 | 178 | 44 | 144 | 1.38e-25 | 100 |
| MS.gene072460.t1 | AT3G12480 | 37.179 | 78 | 49 | 0 | 102 | 179 | 9 | 86 | 1.28e-11 | 63.9 |
Find 92 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCAGCACTTCATCTTTC+AGG | 0.158704 | 7.3:-3435999 | None:intergenic |
| GTCATTTGGTTTGGCTGATA+TGG | 0.158964 | 7.3:-3435535 | None:intergenic |
| GACTGATATCTTTGATTTCC+TGG | 0.246183 | 7.3:+3435954 | MS.gene072460:CDS |
| TCAACCTGCTGGAGCTCAGC+TGG | 0.263146 | 7.3:+3435609 | MS.gene072460:CDS |
| GGGGCCCCAGTCATTTGGTT+TGG | 0.316348 | 7.3:-3435544 | None:intergenic |
| GGAGATGGTGGTCGCTGTTC+CGG | 0.343092 | 7.3:-3436207 | None:intergenic |
| GGCTGCTGAGCATACATGTT+TGG | 0.345011 | 7.3:-3436147 | None:intergenic |
| GCCTCCCAAGTTGGAACTGC+TGG | 0.356093 | 7.3:+3436096 | MS.gene072460:CDS |
| GATCCGTTGTTACATCAGTT+GGG | 0.366704 | 7.3:+3435569 | MS.gene072460:CDS |
| ATCCTGGGGCCCCAGTCATT+TGG | 0.379289 | 7.3:-3435549 | None:intergenic |
| TCATTTGGTTTGGCTGATAT+GGG | 0.380613 | 7.3:-3435534 | None:intergenic |
| ACTGATGTAACAACGGATCC+TGG | 0.389880 | 7.3:-3435565 | None:intergenic |
| TGGAACTGCTGGTGTCATAA+TGG | 0.411463 | 7.3:+3436107 | MS.gene072460:CDS |
| CACAACCAGAATCCGCAAAT+GGG | 0.411828 | 7.3:+3435472 | MS.gene072460:CDS |
| AGAGGAACAATGCCTGTTGC+TGG | 0.417994 | 7.3:+3436030 | MS.gene072460:CDS |
| GGATCCGTTGTTACATCAGT+TGG | 0.426256 | 7.3:+3435568 | MS.gene072460:CDS |
| AACAACAGCTGCAATCCTTC+TGG | 0.435091 | 7.3:+3435686 | MS.gene072460:CDS |
| GCTGCTGAGCATACATGTTT+GGG | 0.435445 | 7.3:-3436146 | None:intergenic |
| CATCTCAGCATCTAGTGATC+TGG | 0.437549 | 7.3:-3436228 | None:intergenic |
| CAGTGTGGTTCCATGAGCGC+AGG | 0.449372 | 7.3:-3435876 | None:intergenic |
| ACAAATGTGGCCACAGCCTC+CGG | 0.450073 | 7.3:+3436188 | MS.gene072460:CDS |
| GCACAACCAGAATCCGCAAA+TGG | 0.451270 | 7.3:+3435471 | MS.gene072460:CDS |
| CAAGAACCACAGCCTTCCTC+TGG | 0.452736 | 7.3:+3435747 | MS.gene072460:CDS |
| GCATCAGCAGGACCAGCAAC+AGG | 0.455014 | 7.3:-3436042 | None:intergenic |
| GTTGCTGCTGTTGCTGCTGA+TGG | 0.455992 | 7.3:-3435660 | None:intergenic |
| GGCCTGTGAGATGTTCATAT+TGG | 0.456864 | 7.3:+3435846 | MS.gene072460:CDS |
| TGGAGTTAACCCTGCGCTCA+TGG | 0.458619 | 7.3:+3435866 | MS.gene072460:CDS |
| CAGTCCACTGGTCAACCTGC+TGG | 0.464075 | 7.3:+3435598 | MS.gene072460:CDS |
| CACATTTGTGGTGCCATGTA+GGG | 0.465255 | 7.3:-3436174 | None:intergenic |
| CTGATGTAACAACGGATCCT+GGG | 0.469388 | 7.3:-3435564 | None:intergenic |
| CTGGTACTGGTTTGACCAGA+AGG | 0.471679 | 7.3:-3435701 | None:intergenic |
| CAACCTGCTGGAGCTCAGCT+GGG | 0.476224 | 7.3:+3435610 | MS.gene072460:CDS |
| TGACACCAGCAGTTCCAACT+TGG | 0.478083 | 7.3:-3436101 | None:intergenic |
| GGAACTGCTGGTGTCATAAT+GGG | 0.479046 | 7.3:+3436108 | MS.gene072460:CDS |
| TTGTGGTGCCATGTAGGGAT+GGG | 0.484954 | 7.3:-3436169 | None:intergenic |
| AACCAAATGACTGGGGCCCC+AGG | 0.486456 | 7.3:+3435547 | MS.gene072460:CDS |
| TTTGTGGTGCCATGTAGGGA+TGG | 0.486986 | 7.3:-3436170 | None:intergenic |
| GGAGGCTGTGGCCACATTTG+TGG | 0.486993 | 7.3:-3436186 | None:intergenic |
| GCAACAGGCATTGTTCCTCT+TGG | 0.487666 | 7.3:-3436027 | None:intergenic |
| ACCACACTGAAGAGAACAAA+AGG | 0.492883 | 7.3:+3435890 | MS.gene072460:CDS |
| CCACATTTGTGGTGCCATGT+AGG | 0.497501 | 7.3:-3436175 | None:intergenic |
| TACATGTTTGGGTCCATCAC+AGG | 0.504424 | 7.3:-3436135 | None:intergenic |
| TATCAGCCAAACCAAATGAC+TGG | 0.504884 | 7.3:+3435538 | MS.gene072460:CDS |
| CCTCAGCATGCCTCCCAAGT+TGG | 0.514710 | 7.3:+3436087 | MS.gene072460:CDS |
| TCTTGATCCTTGCCAGAGGA+AGG | 0.515769 | 7.3:-3435759 | None:intergenic |
| GTTGCTGCTGATGGATATGC+TGG | 0.517658 | 7.3:-3435651 | None:intergenic |
| TGACCCAGCTGAGCTCCAGC+AGG | 0.517937 | 7.3:-3435613 | None:intergenic |
| CCAGTACCAGGAAATTGAAA+AGG | 0.518655 | 7.3:+3435714 | MS.gene072460:CDS |
| CTTCTGGTCAAACCAGTACC+AGG | 0.521956 | 7.3:+3435702 | MS.gene072460:CDS |
| ATCCGTTGTTACATCAGTTG+GGG | 0.531831 | 7.3:+3435570 | MS.gene072460:CDS |
| GGTCGCTGTTCCGGAGGCTG+TGG | 0.539229 | 7.3:-3436198 | None:intergenic |
| GGACCTGAAAGATGAAGTGC+TGG | 0.542953 | 7.3:+3435996 | MS.gene072460:CDS |
| TGTGGTGCCATGTAGGGATG+GGG | 0.546062 | 7.3:-3436168 | None:intergenic |
| ACTTGGGAGGCATGCTGAGG+TGG | 0.548128 | 7.3:-3436084 | None:intergenic |
| ATCAGCCAAACCAAATGACT+GGG | 0.550264 | 7.3:+3435539 | MS.gene072460:CDS |
| GACACCAGCAGTTCCAACTT+GGG | 0.552393 | 7.3:-3436100 | None:intergenic |
| AAGCACCTGTCATATTTGCA+AGG | 0.553287 | 7.3:+3435824 | MS.gene072460:CDS |
| CAGTAAGGAAGAGCATCAGC+AGG | 0.560205 | 7.3:-3436054 | None:intergenic |
| CAGGCCCTTGCAAATATGAC+AGG | 0.560856 | 7.3:-3435829 | None:intergenic |
| TCAGCAGCCCCATCCCTACA+TGG | 0.562305 | 7.3:+3436161 | MS.gene072460:CDS |
| TCCTTGCCAGAGGAAGGCTG+TGG | 0.564697 | 7.3:-3435753 | None:intergenic |
| CAAAACAGAATGGATCATCA+AGG | 0.570283 | 7.3:+3435448 | None:intergenic |
| AGCATCTAGTGATCTGGAGA+TGG | 0.574668 | 7.3:-3436222 | None:intergenic |
| ATATTGCTGCTGCAATCACT+AGG | 0.575052 | 7.3:+3435932 | MS.gene072460:CDS |
| GAAGATCATGAAGGCTGATG+AGG | 0.575398 | 7.3:+3435780 | MS.gene072460:CDS |
| TGAGGTGGCATGTAGCAGTA+AGG | 0.584291 | 7.3:-3436069 | None:intergenic |
| ACCACAGCCTTCCTCTGGCA+AGG | 0.585880 | 7.3:+3435752 | MS.gene072460:CDS |
| AGCTCCAGCAGGTTGACCAG+TGG | 0.593284 | 7.3:-3435602 | None:intergenic |
| CATAATGGGAAAGCCTGTGA+TGG | 0.593370 | 7.3:+3436122 | MS.gene072460:CDS |
| CACGAGGCACAATGTCAACC+AGG | 0.593690 | 7.3:-3435972 | None:intergenic |
| ACAACCAGAATCCGCAAATG+GGG | 0.594889 | 7.3:+3435473 | MS.gene072460:CDS |
| ATCTAGTGATCTGGAGATGG+TGG | 0.605869 | 7.3:-3436219 | None:intergenic |
| CTCCAATATGAACATCTCAC+AGG | 0.609517 | 7.3:-3435848 | None:intergenic |
| TGATATGGGTTAGATCCGTA+CGG | 0.617785 | 7.3:-3435520 | None:intergenic |
| AGCGGCAGTCAAATGCCGTA+CGG | 0.619913 | 7.3:+3435505 | MS.gene072460:CDS |
| TGATGTAACAACGGATCCTG+GGG | 0.620797 | 7.3:-3435563 | None:intergenic |
| AGCACCTGTCATATTTGCAA+GGG | 0.622434 | 7.3:+3435825 | MS.gene072460:CDS |
| ATCTTCTTGATCCTTGCCAG+AGG | 0.624577 | 7.3:-3435763 | None:intergenic |
| AAAACAGAATGGATCATCAA+GGG | 0.625548 | 7.3:+3435449 | None:intergenic |
| ACCAGCAGTTCCAACTTGGG+AGG | 0.637100 | 7.3:-3436097 | None:intergenic |
| AGTGTGGTTCCATGAGCGCA+GGG | 0.637592 | 7.3:-3435875 | None:intergenic |
| CCTACATGGCACCACAAATG+TGG | 0.644640 | 7.3:+3436175 | MS.gene072460:CDS |
| GATGGTGGTCGCTGTTCCGG+AGG | 0.649506 | 7.3:-3436204 | None:intergenic |
| CCAACTTGGGAGGCATGCTG+AGG | 0.657795 | 7.3:-3436087 | None:intergenic |
| TCATCTTTCAGGTCCTCACG+AGG | 0.665344 | 7.3:-3435988 | None:intergenic |
| AAGGATCAAGAAGATCATGA+AGG | 0.667741 | 7.3:+3435771 | MS.gene072460:CDS |
| TCCGTTGTTACATCAGTTGG+GGG | 0.670764 | 7.3:+3435571 | MS.gene072460:CDS |
| GGTTGACATTGTGCCTCGTG+AGG | 0.672349 | 7.3:+3435975 | MS.gene072460:CDS |
| CAACCAGAATCCGCAAATGG+GGG | 0.676007 | 7.3:+3435474 | MS.gene072460:CDS |
| ACACTGAAGAGAACAAAAGG+AGG | 0.682027 | 7.3:+3435893 | MS.gene072460:CDS |
| GTGCTGGCTTCAATTCCAAG+AGG | 0.714242 | 7.3:+3436012 | MS.gene072460:CDS |
| TCAGCCAAACCAAATGACTG+GGG | 0.740826 | 7.3:+3435540 | MS.gene072460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAGGATCAAGAAGATCATGA+AGG | + | chr7.3:3435771-3435790 | MS.gene072460:CDS | 35.0% | |
| ! | CAGTAACCTTTTCAATTTCC+TGG | - | chr7.3:3435723-3435742 | None:intergenic | 35.0% |
| ! | GACTGATATCTTTGATTTCC+TGG | + | chr7.3:3435954-3435973 | MS.gene072460:CDS | 35.0% |
| !! | TCATTTGGTTTGGCTGATAT+GGG | - | chr7.3:3435537-3435556 | None:intergenic | 35.0% |
| AAGCACCTGTCATATTTGCA+AGG | + | chr7.3:3435824-3435843 | MS.gene072460:CDS | 40.0% | |
| ACACTGAAGAGAACAAAAGG+AGG | + | chr7.3:3435893-3435912 | MS.gene072460:CDS | 40.0% | |
| ACCACACTGAAGAGAACAAA+AGG | + | chr7.3:3435890-3435909 | MS.gene072460:CDS | 40.0% | |
| AGCACCTGTCATATTTGCAA+GGG | + | chr7.3:3435825-3435844 | MS.gene072460:CDS | 40.0% | |
| ATATTGCTGCTGCAATCACT+AGG | + | chr7.3:3435932-3435951 | MS.gene072460:CDS | 40.0% | |
| ATCAGCCAAACCAAATGACT+GGG | + | chr7.3:3435539-3435558 | MS.gene072460:CDS | 40.0% | |
| ATCCGTTGTTACATCAGTTG+GGG | + | chr7.3:3435570-3435589 | MS.gene072460:CDS | 40.0% | |
| CCAGTACCAGGAAATTGAAA+AGG | + | chr7.3:3435714-3435733 | MS.gene072460:CDS | 40.0% | |
| CTCCAATATGAACATCTCAC+AGG | - | chr7.3:3435851-3435870 | None:intergenic | 40.0% | |
| GATCCGTTGTTACATCAGTT+GGG | + | chr7.3:3435569-3435588 | MS.gene072460:CDS | 40.0% | |
| TATCAGCCAAACCAAATGAC+TGG | + | chr7.3:3435538-3435557 | MS.gene072460:CDS | 40.0% | |
| ! | CCTTTTCAATTTCCTGGTAC+TGG | - | chr7.3:3435717-3435736 | None:intergenic | 40.0% |
| ! | TCCTTTTGTTCTCTTCAGTG+TGG | - | chr7.3:3435894-3435913 | None:intergenic | 40.0% |
| !! | GTCATTTGGTTTGGCTGATA+TGG | - | chr7.3:3435538-3435557 | None:intergenic | 40.0% |
| !! | TGATATGGGTTAGATCCGTA+CGG | - | chr7.3:3435523-3435542 | None:intergenic | 40.0% |
| AACAACAGCTGCAATCCTTC+TGG | + | chr7.3:3435686-3435705 | MS.gene072460:CDS | 45.0% | |
| AAGCCAGCACTTCATCTTTC+AGG | - | chr7.3:3436002-3436021 | None:intergenic | 45.0% | |
| ACAACCAGAATCCGCAAATG+GGG | + | chr7.3:3435473-3435492 | MS.gene072460:CDS | 45.0% | |
| ACTGATGTAACAACGGATCC+TGG | - | chr7.3:3435568-3435587 | None:intergenic | 45.0% | |
| ATCTTCTTGATCCTTGCCAG+AGG | - | chr7.3:3435766-3435785 | None:intergenic | 45.0% | |
| CACAACCAGAATCCGCAAAT+GGG | + | chr7.3:3435472-3435491 | MS.gene072460:CDS | 45.0% | |
| CTGATGTAACAACGGATCCT+GGG | - | chr7.3:3435567-3435586 | None:intergenic | 45.0% | |
| GAAGATCATGAAGGCTGATG+AGG | + | chr7.3:3435780-3435799 | MS.gene072460:CDS | 45.0% | |
| GCTGCTGAGCATACATGTTT+GGG | - | chr7.3:3436149-3436168 | None:intergenic | 45.0% | |
| GGATCCGTTGTTACATCAGT+TGG | + | chr7.3:3435568-3435587 | MS.gene072460:CDS | 45.0% | |
| GGCCTGTGAGATGTTCATAT+TGG | + | chr7.3:3435846-3435865 | MS.gene072460:CDS | 45.0% | |
| TACATGTTTGGGTCCATCAC+AGG | - | chr7.3:3436138-3436157 | None:intergenic | 45.0% | |
| TCAGCCAAACCAAATGACTG+GGG | + | chr7.3:3435540-3435559 | MS.gene072460:CDS | 45.0% | |
| TCCGTTGTTACATCAGTTGG+GGG | + | chr7.3:3435571-3435590 | MS.gene072460:CDS | 45.0% | |
| TGATGTAACAACGGATCCTG+GGG | - | chr7.3:3435566-3435585 | None:intergenic | 45.0% | |
| ! | CATAATGGGAAAGCCTGTGA+TGG | + | chr7.3:3436122-3436141 | MS.gene072460:CDS | 45.0% |
| !! | CACATTTGTGGTGCCATGTA+GGG | - | chr7.3:3436177-3436196 | None:intergenic | 45.0% |
| !! | GGAACTGCTGGTGTCATAAT+GGG | + | chr7.3:3436108-3436127 | MS.gene072460:CDS | 45.0% |
| !! | TGGAACTGCTGGTGTCATAA+TGG | + | chr7.3:3436107-3436126 | MS.gene072460:CDS | 45.0% |
| AATCCGCAAATGGGGGTTGT+CGG | + | chr7.3:3435481-3435500 | MS.gene072460:CDS | 50.0% | |
| AGAGGAACAATGCCTGTTGC+TGG | + | chr7.3:3436030-3436049 | MS.gene072460:CDS | 50.0% | |
| CAACCAGAATCCGCAAATGG+GGG | + | chr7.3:3435474-3435493 | MS.gene072460:CDS | 50.0% | |
| CAGGCCCTTGCAAATATGAC+AGG | - | chr7.3:3435832-3435851 | None:intergenic | 50.0% | |
| CCTACATGGCACCACAAATG+TGG | + | chr7.3:3436175-3436194 | MS.gene072460:CDS | 50.0% | |
| CTTCTGGTCAAACCAGTACC+AGG | + | chr7.3:3435702-3435721 | MS.gene072460:CDS | 50.0% | |
| GACACCAGCAGTTCCAACTT+GGG | - | chr7.3:3436103-3436122 | None:intergenic | 50.0% | |
| GCACAACCAGAATCCGCAAA+TGG | + | chr7.3:3435471-3435490 | MS.gene072460:CDS | 50.0% | |
| GCCCCCAACTGATGTAACAA+CGG | - | chr7.3:3435575-3435594 | None:intergenic | 50.0% | |
| GGACCTGAAAGATGAAGTGC+TGG | + | chr7.3:3435996-3436015 | MS.gene072460:CDS | 50.0% | |
| GGCTGCTGAGCATACATGTT+TGG | - | chr7.3:3436150-3436169 | None:intergenic | 50.0% | |
| TCTTGATCCTTGCCAGAGGA+AGG | - | chr7.3:3435762-3435781 | None:intergenic | 50.0% | |
| TGACACCAGCAGTTCCAACT+TGG | - | chr7.3:3436104-3436123 | None:intergenic | 50.0% | |
| TGAGGTGGCATGTAGCAGTA+AGG | - | chr7.3:3436072-3436091 | None:intergenic | 50.0% | |
| ! | GCAACAGGCATTGTTCCTCT+TGG | - | chr7.3:3436030-3436049 | None:intergenic | 50.0% |
| ! | GTTGCTGCTGATGGATATGC+TGG | - | chr7.3:3435654-3435673 | None:intergenic | 50.0% |
| ! | TCATCTTTCAGGTCCTCACG+AGG | - | chr7.3:3435991-3436010 | None:intergenic | 50.0% |
| !! | CAGTAAGGAAGAGCATCAGC+AGG | - | chr7.3:3436057-3436076 | None:intergenic | 50.0% |
| !! | CCACATTTGTGGTGCCATGT+AGG | - | chr7.3:3436178-3436197 | None:intergenic | 50.0% |
| !! | CTGGTACTGGTTTGACCAGA+AGG | - | chr7.3:3435704-3435723 | None:intergenic | 50.0% |
| !! | GTGCTGGCTTCAATTCCAAG+AGG | + | chr7.3:3436012-3436031 | MS.gene072460:CDS | 50.0% |
| !! | TTGTGGTGCCATGTAGGGAT+GGG | - | chr7.3:3436172-3436191 | None:intergenic | 50.0% |
| !! | TTTGTGGTGCCATGTAGGGA+TGG | - | chr7.3:3436173-3436192 | None:intergenic | 50.0% |
| ACAAATGTGGCCACAGCCTC+CGG | + | chr7.3:3436188-3436207 | MS.gene072460:CDS | 55.0% | |
| ACCAGCAGTTCCAACTTGGG+AGG | - | chr7.3:3436100-3436119 | None:intergenic | 55.0% | |
| AGCGGCAGTCAAATGCCGTA+CGG | + | chr7.3:3435505-3435524 | MS.gene072460:CDS | 55.0% | |
| AGTGTGGTTCCATGAGCGCA+GGG | - | chr7.3:3435878-3435897 | None:intergenic | 55.0% | |
| CAAATGGGGGTTGTCGGTAG+CGG | + | chr7.3:3435487-3435506 | MS.gene072460:CDS | 55.0% | |
| CAACCCCCATTTGCGGATTC+TGG | - | chr7.3:3435480-3435499 | None:intergenic | 55.0% | |
| CAAGAACCACAGCCTTCCTC+TGG | + | chr7.3:3435747-3435766 | MS.gene072460:CDS | 55.0% | |
| CACGAGGCACAATGTCAACC+AGG | - | chr7.3:3435975-3435994 | None:intergenic | 55.0% | |
| CTACCGACAACCCCCATTTG+CGG | - | chr7.3:3435487-3435506 | None:intergenic | 55.0% | |
| GGTTGACATTGTGCCTCGTG+AGG | + | chr7.3:3435975-3435994 | MS.gene072460:CDS | 55.0% | |
| GTTGCTGCTGTTGCTGCTGA+TGG | - | chr7.3:3435663-3435682 | None:intergenic | 55.0% | |
| TGGAGTTAACCCTGCGCTCA+TGG | + | chr7.3:3435866-3435885 | MS.gene072460:CDS | 55.0% | |
| !! | TGTGGTGCCATGTAGGGATG+GGG | - | chr7.3:3436171-3436190 | None:intergenic | 55.0% |
| AACCAAATGACTGGGGCCCC+AGG | + | chr7.3:3435547-3435566 | MS.gene072460:CDS | 60.0% | |
| ACCACAGCCTTCCTCTGGCA+AGG | + | chr7.3:3435752-3435771 | MS.gene072460:CDS | 60.0% | |
| ATCCTGGGGCCCCAGTCATT+TGG | - | chr7.3:3435552-3435571 | None:intergenic | 60.0% | |
| CAACCTGCTGGAGCTCAGCT+GGG | + | chr7.3:3435610-3435629 | MS.gene072460:CDS | 60.0% | |
| CAGTCCACTGGTCAACCTGC+TGG | + | chr7.3:3435598-3435617 | MS.gene072460:CDS | 60.0% | |
| CAGTGTGGTTCCATGAGCGC+AGG | - | chr7.3:3435879-3435898 | None:intergenic | 60.0% | |
| CCTCAGCATGCCTCCCAAGT+TGG | + | chr7.3:3436087-3436106 | MS.gene072460:CDS | 60.0% | |
| GCATCAGCAGGACCAGCAAC+AGG | - | chr7.3:3436045-3436064 | None:intergenic | 60.0% | |
| GGAGGCTGTGGCCACATTTG+TGG | - | chr7.3:3436189-3436208 | None:intergenic | 60.0% | |
| GGGGCCCCAGTCATTTGGTT+TGG | - | chr7.3:3435547-3435566 | None:intergenic | 60.0% | |
| TCAACCTGCTGGAGCTCAGC+TGG | + | chr7.3:3435609-3435628 | MS.gene072460:CDS | 60.0% | |
| TCAGCAGCCCCATCCCTACA+TGG | + | chr7.3:3436161-3436180 | MS.gene072460:CDS | 60.0% | |
| TCCTTGCCAGAGGAAGGCTG+TGG | - | chr7.3:3435756-3435775 | None:intergenic | 60.0% | |
| ! | ACTTGGGAGGCATGCTGAGG+TGG | - | chr7.3:3436087-3436106 | None:intergenic | 60.0% |
| ! | AGCTCCAGCAGGTTGACCAG+TGG | - | chr7.3:3435605-3435624 | None:intergenic | 60.0% |
| ! | CCAACTTGGGAGGCATGCTG+AGG | - | chr7.3:3436090-3436109 | None:intergenic | 60.0% |
| ! | GCCTCCCAAGTTGGAACTGC+TGG | + | chr7.3:3436096-3436115 | MS.gene072460:CDS | 60.0% |
| ! | GGAGATGGTGGTCGCTGTTC+CGG | - | chr7.3:3436210-3436229 | None:intergenic | 60.0% |
| TGACCCAGCTGAGCTCCAGC+AGG | - | chr7.3:3435616-3435635 | None:intergenic | 65.0% | |
| ! | GATGGTGGTCGCTGTTCCGG+AGG | - | chr7.3:3436207-3436226 | None:intergenic | 65.0% |
| ! | GTTGGGGGCATGCAGTCCAC+TGG | + | chr7.3:3435586-3435605 | MS.gene072460:CDS | 65.0% |
| GGTCGCTGTTCCGGAGGCTG+TGG | - | chr7.3:3436201-3436220 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3435457 | 3436239 | 3435457 | ID=MS.gene072460 |
| chr7.3 | mRNA | 3435457 | 3436239 | 3435457 | ID=MS.gene072460.t1;Parent=MS.gene072460 |
| chr7.3 | exon | 3435457 | 3436239 | 3435457 | ID=MS.gene072460.t1.exon1;Parent=MS.gene072460.t1 |
| chr7.3 | CDS | 3435457 | 3436239 | 3435457 | ID=cds.MS.gene072460.t1;Parent=MS.gene072460.t1 |
| Gene Sequence |
| Protein sequence |
