AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072537


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072537.t1 MTR_7g112430 98.832 428 5 0 1 428 1 428 0.0 865
MS.gene072537.t1 MTR_1g083750 84.834 422 62 1 1 420 1 422 0.0 714
MS.gene072537.t1 MTR_1g083750 85.152 330 47 1 93 420 1 330 0.0 555
MS.gene072537.t1 MTR_7g029240 67.586 435 114 12 1 421 1 422 0.0 527
MS.gene072537.t1 MTR_1g019760 59.314 408 164 2 14 420 11 417 1.43e-178 505
MS.gene072537.t1 MTR_1g110210 74.766 321 81 0 1 321 1 321 4.30e-175 492
MS.gene072537.t1 MTR_3g101540 57.720 421 169 3 8 422 4 421 4.04e-174 494
MS.gene072537.t1 MTR_3g101540 57.720 421 169 3 8 422 4 421 4.35e-174 493
MS.gene072537.t1 MTR_1g019760 61.449 345 131 2 14 357 11 354 3.20e-153 440
MS.gene072537.t1 MTR_1g014640 33.730 252 141 10 57 302 97 328 1.94e-30 120
MS.gene072537.t1 MTR_1g013400 33.730 252 141 10 57 302 97 328 1.94e-30 120
MS.gene072537.t1 MTR_3g105730 33.878 245 136 10 57 295 32 256 2.18e-29 115
MS.gene072537.t1 MTR_3g105730 33.333 246 136 10 57 295 54 278 3.93e-29 115
MS.gene072537.t1 MTR_3g464650 30.033 303 172 14 5 297 42 314 4.13e-27 110
MS.gene072537.t1 MTR_1g115570 32.155 283 159 14 25 304 90 342 7.45e-27 110
MS.gene072537.t1 MTR_3g464700 30.970 268 152 11 6 260 48 295 3.21e-26 108
MS.gene072537.t1 MTR_5g071550 31.429 245 143 10 60 297 148 374 3.75e-25 106
MS.gene072537.t1 MTR_8g463130 33.191 235 133 10 66 295 64 279 1.59e-23 100
MS.gene072537.t1 MTR_8g463130 33.898 236 126 11 68 295 38 251 1.81e-23 99.0
MS.gene072537.t1 MTR_2g078760 31.128 257 148 11 46 297 21 253 1.23e-22 96.7
MS.gene072537.t1 MTR_2g078760 31.128 257 148 11 46 297 100 332 1.68e-22 98.2
MS.gene072537.t1 MTR_4g125810 29.740 269 142 9 62 297 249 503 1.03e-21 97.8
MS.gene072537.t1 MTR_5g071550 31.633 196 117 7 60 255 148 326 8.16e-21 93.6
MS.gene072537.t1 MTR_2g008850 29.362 235 142 9 66 295 17 232 2.72e-20 89.7
MS.gene072537.t1 MTR_3g091060 30.196 255 149 10 46 295 108 338 4.42e-20 91.7
MS.gene072537.t1 MTR_2g008850 28.936 235 143 8 66 295 63 278 1.81e-19 88.6
MS.gene072537.t1 MTR_4g094208 30.472 233 138 9 68 295 61 274 2.59e-19 87.8
MS.gene072537.t1 MTR_1g050520 31.301 246 136 7 69 299 419 646 4.50e-19 90.1
MS.gene072537.t1 MTR_3g074610 30.043 233 139 8 68 295 66 279 8.74e-19 86.7
MS.gene072537.t1 MTR_5g063940 30.638 235 139 8 66 295 17 232 2.08e-18 84.3
MS.gene072537.t1 MTR_1g086350 30.000 270 149 12 66 312 14 266 2.20e-18 85.5
MS.gene072537.t1 MTR_2g078760 30.374 214 116 8 46 252 100 287 2.25e-18 85.5
MS.gene072537.t1 MTR_5g009370 32.020 203 117 7 65 259 84 273 2.90e-18 85.9
MS.gene072537.t1 MTR_5g063940 30.901 233 137 8 68 295 66 279 3.65e-18 84.7
MS.gene072537.t1 MTR_4g094542 32.068 237 132 10 66 295 148 362 4.61e-18 85.5
MS.gene072537.t1 MTR_4g123080 30.952 252 138 11 67 299 112 346 5.28e-18 85.5
MS.gene072537.t1 MTR_4g123080 30.952 252 138 11 67 299 94 328 6.10e-18 85.1
MS.gene072537.t1 MTR_1g086350 30.112 269 148 12 67 312 101 352 9.12e-18 84.7
MS.gene072537.t1 MTR_8g102550 30.412 194 120 6 69 258 153 335 1.02e-17 85.1
MS.gene072537.t1 MTR_1g015110 29.889 271 134 10 69 299 291 545 1.14e-17 85.5
MS.gene072537.t1 MTR_1g086350 30.112 269 148 12 67 312 117 368 1.40e-17 84.3
MS.gene072537.t1 MTR_6g081850 29.474 285 152 12 40 295 52 316 1.85e-17 83.2
MS.gene072537.t1 MTR_2g040500 26.220 328 169 10 32 297 219 535 1.89e-17 84.7
MS.gene072537.t1 MTR_3g104710 29.740 269 133 9 69 297 287 539 2.59e-17 84.3
MS.gene072537.t1 MTR_4g116420 30.830 253 128 11 65 295 121 348 1.33e-16 81.6
MS.gene072537.t1 MTR_5g024340 28.455 246 134 10 67 295 123 343 2.01e-16 80.9
MS.gene072537.t1 MTR_3g068200 30.047 213 117 6 66 261 121 318 2.46e-16 80.9
MS.gene072537.t1 MTR_2g033000 30.677 251 138 11 64 295 96 329 3.48e-16 80.1
MS.gene072537.t1 MTR_7g112490 36.875 160 81 8 131 276 200 353 5.70e-15 76.6
MS.gene072537.t1 MTR_7g112490 36.875 160 81 8 131 276 182 335 7.88e-15 75.9
MS.gene072537.t1 MTR_2g020970 28.571 287 161 12 43 297 67 341 8.76e-15 75.9
MS.gene072537.t1 MTR_6g087000 27.859 341 180 18 4 297 60 381 1.57e-14 76.3
MS.gene072537.t1 MTR_6g087000 27.859 341 180 18 4 297 60 381 2.00e-14 76.3
MS.gene072537.t1 MTR_2g020970 28.049 328 186 14 43 338 67 376 2.00e-14 75.1
MS.gene072537.t1 MTR_7g021530 30.303 264 145 12 41 283 52 297 2.07e-14 74.7
MS.gene072537.t1 MTR_7g021530 30.303 264 145 12 41 283 102 347 5.24e-14 73.9
MS.gene072537.t1 MTR_5g080680 28.641 206 121 7 69 261 133 325 8.84e-14 72.8
MS.gene072537.t1 MTR_7g021530 30.303 264 145 12 41 283 143 388 8.90e-14 73.2
MS.gene072537.t1 MTR_1g028300 30.242 248 140 8 69 297 146 379 5.04e-13 70.5
MS.gene072537.t1 MTR_3g107880 29.688 256 131 11 61 295 115 342 7.62e-13 70.1
MS.gene072537.t1 MTR_3g107880 29.688 256 131 11 61 295 116 343 7.66e-13 70.1
MS.gene072537.t1 MTR_3g107880 29.688 256 131 11 61 295 58 285 9.59e-13 69.3
MS.gene072537.t1 MTR_3g105730 31.884 138 81 5 57 190 54 182 1.34e-12 67.4
MS.gene072537.t1 MTR_1g014190 25.869 259 121 10 54 257 38 280 1.37e-12 68.9
MS.gene072537.t1 MTR_1g014190 25.869 259 121 10 54 257 76 318 1.53e-12 69.3
MS.gene072537.t1 MTR_8g017240 30.303 198 113 9 99 283 135 320 2.66e-12 68.2
MS.gene072537.t1 MTR_4g007440 32.624 141 68 5 128 257 156 280 2.52e-11 65.1
MS.gene072537.t1 MTR_3g105880 31.206 141 70 5 128 257 156 280 3.42e-11 64.7
MS.gene072537.t1 MTR_7g070510 24.607 382 223 18 21 352 50 416 5.45e-11 64.7
MS.gene072537.t1 MTR_3g105880 31.206 141 70 5 128 257 156 280 5.75e-11 63.9
MS.gene072537.t1 MTR_2g078760 33.077 130 72 5 68 193 117 235 6.74e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072537.t1 AT1G09160 76.112 427 102 0 1 427 1 427 0.0 659
MS.gene072537.t1 AT1G09160 76.112 427 102 0 1 427 1 427 0.0 659
MS.gene072537.t1 AT1G68410 71.498 414 112 3 14 422 19 431 0.0 596
MS.gene072537.t1 AT1G68410 71.498 414 112 3 14 422 19 431 0.0 596
MS.gene072537.t1 AT1G68410 71.498 414 112 3 14 422 19 431 0.0 596
MS.gene072537.t1 AT1G68410 71.498 414 112 3 14 422 19 431 0.0 596
MS.gene072537.t1 AT1G47380 61.071 411 157 2 14 422 10 419 0.0 519
MS.gene072537.t1 AT2G34740 35.294 238 130 9 66 298 117 335 6.47e-29 116
MS.gene072537.t1 AT4G31750 31.365 271 144 10 57 306 53 302 1.09e-28 115
MS.gene072537.t1 AT4G31750 31.365 271 144 10 57 306 53 302 1.09e-28 115
MS.gene072537.t1 AT1G07160 32.130 277 153 12 33 297 123 376 1.57e-28 115
MS.gene072537.t1 AT4G31750 33.061 245 138 9 57 295 53 277 1.17e-27 112
MS.gene072537.t1 AT5G10740 32.576 264 145 10 39 295 40 277 2.12e-27 112
MS.gene072537.t1 AT5G10740 32.576 264 145 10 39 295 40 277 2.12e-27 112
MS.gene072537.t1 AT5G24940 32.075 265 145 11 39 295 40 277 1.76e-26 111
MS.gene072537.t1 AT1G43900 32.967 273 146 14 34 295 120 366 8.70e-26 108
MS.gene072537.t1 AT1G78200 34.322 236 128 10 68 295 19 235 1.01e-25 105
MS.gene072537.t1 AT1G78200 34.322 236 128 10 68 295 19 235 1.01e-25 105
MS.gene072537.t1 AT4G26080 30.258 271 146 7 61 299 165 424 1.92e-25 108
MS.gene072537.t1 AT1G78200 34.322 236 128 10 68 295 64 280 3.33e-25 104
MS.gene072537.t1 AT1G78200 34.322 236 128 10 68 295 64 280 3.33e-25 104
MS.gene072537.t1 AT1G78200 34.322 236 128 10 68 295 64 280 3.33e-25 104
MS.gene072537.t1 AT1G22280 31.064 235 144 7 66 295 63 284 4.79e-25 104
MS.gene072537.t1 AT5G53140 32.031 256 143 12 46 295 115 345 1.25e-24 105
MS.gene072537.t1 AT5G53140 32.031 256 143 12 46 295 115 345 1.25e-24 105
MS.gene072537.t1 AT4G28400 31.760 233 135 8 68 295 45 258 2.49e-24 101
MS.gene072537.t1 AT1G67820 30.328 244 145 9 34 270 78 303 2.73e-24 104
MS.gene072537.t1 AT4G28400 31.760 233 135 8 68 295 67 280 3.85e-24 101
MS.gene072537.t1 AT2G20630 30.597 268 154 12 33 295 36 276 3.90e-24 101
MS.gene072537.t1 AT1G67820 31.646 237 137 10 34 263 114 332 4.26e-24 104
MS.gene072537.t1 AT5G57050 29.630 270 146 9 61 297 113 371 5.18e-24 103
MS.gene072537.t1 AT5G57050 31.365 271 140 11 61 297 153 411 9.16e-24 103
MS.gene072537.t1 AT2G30020 29.779 272 161 12 33 295 140 390 1.02e-23 102
MS.gene072537.t1 AT2G20630 30.337 267 154 12 33 294 36 275 1.88e-23 100
MS.gene072537.t1 AT1G34750 30.882 272 153 11 34 295 33 279 2.88e-23 99.4
MS.gene072537.t1 AT1G34750 30.882 272 153 11 34 295 33 279 2.88e-23 99.4
MS.gene072537.t1 AT1G34750 30.882 272 153 11 34 295 33 279 2.88e-23 99.4
MS.gene072537.t1 AT1G22280 31.064 235 138 8 66 295 63 278 4.24e-23 99.0
MS.gene072537.t1 AT2G40180 27.915 283 184 9 21 297 117 385 8.67e-23 99.8
MS.gene072537.t1 AT2G34740 32.353 204 113 7 66 266 113 294 2.81e-20 91.3
MS.gene072537.t1 AT2G34740 32.353 204 113 7 66 266 131 312 3.27e-20 91.3
MS.gene072537.t1 AT2G40860 29.643 280 156 9 36 299 396 650 9.92e-20 92.0
MS.gene072537.t1 AT2G40860 29.643 280 156 9 36 299 298 552 1.78e-19 91.3
MS.gene072537.t1 AT3G15260 31.330 233 136 9 68 295 73 286 9.98e-19 86.7
MS.gene072537.t1 AT3G15260 31.330 233 136 9 68 295 73 286 9.98e-19 86.7
MS.gene072537.t1 AT3G51470 28.920 287 161 13 46 315 42 302 2.66e-18 85.9
MS.gene072537.t1 AT2G40860 29.958 237 128 7 36 258 396 608 3.87e-18 87.4
MS.gene072537.t1 AT3G51470 27.609 297 172 12 36 315 76 346 4.16e-18 85.9
MS.gene072537.t1 AT3G62260 29.323 266 152 13 67 311 26 276 7.96e-18 84.0
MS.gene072537.t1 AT3G62260 28.889 270 156 13 67 315 115 369 2.00e-17 84.0
MS.gene072537.t1 AT3G62260 28.889 270 156 13 67 315 116 370 2.09e-17 84.0
MS.gene072537.t1 AT2G25620 28.417 278 146 11 67 318 127 377 3.72e-17 83.2
MS.gene072537.t1 AT2G25620 28.417 278 146 11 67 318 127 377 3.72e-17 83.2
MS.gene072537.t1 AT1G34750 28.936 235 133 10 34 259 33 242 2.56e-16 78.6
MS.gene072537.t1 AT4G28400 30.159 189 110 6 68 252 67 237 3.77e-16 78.2
MS.gene072537.t1 AT1G18030 28.627 255 136 10 69 295 110 346 8.09e-16 79.0
MS.gene072537.t1 AT5G59220 28.571 210 124 7 63 260 143 338 1.88e-15 78.2
MS.gene072537.t1 AT2G33700 27.273 253 144 9 63 299 118 346 5.18e-15 76.6
MS.gene072537.t1 AT1G07430 28.311 219 124 7 64 265 153 355 1.65e-14 75.5
MS.gene072537.t1 AT1G17550 26.207 290 147 10 59 297 228 501 1.56e-13 72.8
MS.gene072537.t1 AT1G17550 26.207 290 147 10 59 297 228 501 1.56e-13 72.8
MS.gene072537.t1 AT5G26010 28.365 208 125 10 70 258 75 277 5.18e-13 70.1
MS.gene072537.t1 AT4G32950 27.519 258 162 8 71 314 75 321 5.99e-13 70.1
MS.gene072537.t1 AT2G40860 29.536 237 126 8 36 255 396 608 1.19e-12 70.1
MS.gene072537.t1 AT3G17250 27.953 254 141 13 66 295 156 391 1.25e-12 69.7
MS.gene072537.t1 AT3G11410 26.728 217 118 7 69 260 138 338 1.92e-12 68.9
MS.gene072537.t1 AT4G27800 24.390 328 175 13 40 320 67 368 2.78e-12 68.6
MS.gene072537.t1 AT1G72770 27.027 222 109 7 69 257 239 440 5.28e-12 68.2
MS.gene072537.t1 AT1G72770 27.027 222 109 7 69 257 239 440 5.28e-12 68.2
MS.gene072537.t1 AT1G72770 27.027 222 109 7 69 257 239 440 5.28e-12 68.2
MS.gene072537.t1 AT5G27930 33.125 160 90 7 103 251 148 301 6.39e-12 66.6
MS.gene072537.t1 AT1G18030 29.327 208 106 9 69 253 110 299 7.65e-12 66.2
MS.gene072537.t1 AT1G79630 30.319 188 113 6 131 304 151 334 1.63e-11 66.2
MS.gene072537.t1 AT1G79630 30.319 188 113 6 131 304 151 334 1.63e-11 66.2
MS.gene072537.t1 AT1G79630 30.319 188 113 6 131 304 111 294 1.81e-11 65.9
MS.gene072537.t1 AT1G79630 30.319 188 113 6 131 304 111 294 1.81e-11 65.9
MS.gene072537.t1 AT1G79630 30.319 188 113 6 131 304 111 294 1.81e-11 65.9
MS.gene072537.t1 AT1G79630 30.319 188 113 6 131 304 111 294 1.81e-11 65.9
MS.gene072537.t1 AT3G06270 29.066 289 157 14 43 297 68 342 2.12e-11 65.5
MS.gene072537.t1 AT1G79630 30.319 188 113 6 131 304 217 400 2.26e-11 65.9
MS.gene072537.t1 AT1G16220 26.587 252 147 8 84 301 131 378 2.26e-11 65.9
MS.gene072537.t1 AT1G79630 30.319 188 113 6 131 304 221 404 3.21e-11 65.5
MS.gene072537.t1 AT5G01700 27.469 324 183 17 60 345 23 332 3.69e-11 64.7
MS.gene072537.t1 AT3G02750 30.233 215 120 10 106 296 186 394 4.36e-11 65.1
MS.gene072537.t1 AT3G02750 30.233 215 120 10 106 296 186 394 4.36e-11 65.1
MS.gene072537.t1 AT4G27800 25.385 260 130 9 40 257 67 304 5.76e-11 63.9
MS.gene072537.t1 AT4G27800 25.385 260 130 9 40 257 67 304 5.77e-11 63.9
MS.gene072537.t1 AT2G29380 25.524 286 163 12 2 261 46 307 9.06e-11 63.5
MS.gene072537.t1 AT5G51760 24.597 248 145 7 40 260 86 318 9.58e-11 63.5

Find 129 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGCCTCTGATGGTATT+TGG 0.132240 7.2:-4469593 MS.gene072537:CDS
AAAGTAATCTTCTCCTTTCT+TGG 0.184037 7.2:+4471067 None:intergenic
GTAGGACGACTCAATATATT+TGG 0.216620 7.2:-4469946 MS.gene072537:CDS
GCTACATTTGTTATAGTTGA+TGG 0.263958 7.2:-4470111 MS.gene072537:CDS
GGACACTTTATCTAATGATA+TGG 0.286784 7.2:-4469571 MS.gene072537:CDS
ATGCTAACCACACTTCTCTT+TGG 0.296822 7.2:-4469293 MS.gene072537:CDS
TCATACACAGGGGAAACTTC+TGG 0.320861 7.2:-4470141 MS.gene072537:intron
TATAGCCTCTGATGGTATTT+GGG 0.324814 7.2:-4469592 MS.gene072537:CDS
CGACAGTTTGTGCAGAGAAA+TGG 0.342448 7.2:+4468832 None:intergenic
CTGTCACTGTTGCATCTGTT+GGG 0.347808 7.2:-4470083 MS.gene072537:CDS
ACAGATTGCCACAGGGTTCC+CGG 0.349347 7.2:-4471035 MS.gene072537:CDS
TTTGAAGTAGGTGGTAATAC+AGG 0.365809 7.2:+4469329 None:intergenic
GCTTGGCCTCTTTCCTTCCA+TGG 0.373761 7.2:+4468795 None:intergenic
TTTCCTCAGCTTTCAAGTGC+TGG 0.379190 7.2:-4469627 MS.gene072537:intron
TAGGACGACTCAATATATTT+GGG 0.381148 7.2:-4469945 MS.gene072537:CDS
GTTCCATTGGCCACTTTGAT+TGG 0.383557 7.2:-4471152 MS.gene072537:CDS
CGATACCGCAAGATATCAAC+AGG 0.387187 7.2:-4470307 MS.gene072537:CDS
TGCTGCAAAGCTGGTGGTTA+AGG 0.391611 7.2:-4469514 MS.gene072537:intron
ATCTCAGAATTCTTATCAAA+TGG 0.398459 7.2:+4468955 None:intergenic
TGGAAGAGAATGTAGAAGAG+AGG 0.399590 7.2:-4469996 MS.gene072537:CDS
CTTCCTCGCGCTCTAGTTGT+TGG 0.403102 7.2:-4470266 MS.gene072537:CDS
GGCAGGTTGTATCATCCTTC+AGG 0.404506 7.2:+4469381 None:intergenic
ACTTGCTTAACATGTGGTAT+TGG 0.408350 7.2:+4469754 None:intergenic
AAGCTTGCTAGTGGCTTTGT+TGG 0.414421 7.2:+4469250 None:intergenic
TATGGCCGCCATGTCATGTC+GGG 0.417110 7.2:-4469553 MS.gene072537:CDS
TGCGGAGCTTGCTGCAAAGC+TGG 0.418595 7.2:-4469523 MS.gene072537:CDS
CAAGTTTGGACAAGCTGGAT+TGG 0.419868 7.2:-4471090 MS.gene072537:CDS
GACAGTTTGTGCAGAGAAAT+GGG 0.420328 7.2:+4468833 None:intergenic
AAGACGGAAAACGCGGTTGA+TGG 0.435385 7.2:+4471008 None:intergenic
ATCAAAGTGGCCAATGGAAC+TGG 0.436317 7.2:+4471155 None:intergenic
CCTTCCCATGGCTTAGATGC+TGG 0.446835 7.2:+4468856 None:intergenic
CTGAGTATCTAATATGCAAC+GGG 0.448005 7.2:+4470056 None:intergenic
ACTGTCACTGTTGCATCTGT+TGG 0.448709 7.2:-4470084 MS.gene072537:CDS
TTTGTCAAGTTTGGACAAGC+TGG 0.455005 7.2:-4471095 MS.gene072537:CDS
TTGTGCCTATCTAGATCAAT+TGG 0.456296 7.2:-4469805 MS.gene072537:CDS
AGGTAGGTCCTCTTCGCTGC+TGG 0.460279 7.2:-4469837 MS.gene072537:CDS
CAGATTGCCACAGGGTTCCC+GGG 0.464567 7.2:-4471034 MS.gene072537:CDS
GCTTGTCCAAACTTGACAAA+AGG 0.466330 7.2:+4471098 None:intergenic
TGTCTCCAATTGATCTAGAT+AGG 0.466362 7.2:+4469800 None:intergenic
GGTCCTCTTCGCTGCTGGCC+CGG 0.476949 7.2:-4469832 MS.gene072537:CDS
AGCTTTCAAGTGCTGGTGGA+AGG 0.479535 7.2:-4469620 MS.gene072537:CDS
CAACAGGGATGCATGGCTAC+AGG 0.481389 7.2:-4470291 MS.gene072537:CDS
TTAAAACTGCAGGCTTGGTA+AGG 0.482420 7.2:-4468983 MS.gene072537:intron
TAATCAAAACAGATTGCCAC+AGG 0.485310 7.2:-4471043 MS.gene072537:CDS
CCAGTCTATGATCAACTGTC+AGG 0.485755 7.2:+4470016 None:intergenic
CCGTTGCATATTAGATACTC+AGG 0.487206 7.2:-4470055 MS.gene072537:CDS
TCTAGATAGGCACAATCCAC+CGG 0.487715 7.2:+4469813 None:intergenic
GCTGTAACGGTAGGTCTGCT+TGG 0.488420 7.2:+4468778 None:intergenic
AGCTTTGCAGCAAGCTCCGC+AGG 0.489755 7.2:+4469525 None:intergenic
AATAATATCTACAACAAGGC+AGG 0.494608 7.2:+4469364 None:intergenic
CCTCAGCTTTCAAGTGCTGG+TGG 0.495792 7.2:-4469624 MS.gene072537:intron
TCGTCCTACTTCGCCACCAC+TGG 0.499559 7.2:+4469960 None:intergenic
AACGCGGTTGATGGATCCCC+GGG 0.503812 7.2:+4471017 None:intergenic
CAACAACTAGAGCGCGAGGA+AGG 0.504666 7.2:+4470267 None:intergenic
CATTTGTTATAGTTGATGGA+TGG 0.506436 7.2:-4470107 MS.gene072537:CDS
GAAGCCATCACCAGTTCCAT+TGG 0.507591 7.2:-4471165 MS.gene072537:CDS
ACTAGCAAGCTTTCTGCAGT+TGG 0.512919 7.2:-4469239 MS.gene072537:CDS
ACTGCCAGTGGTGGCGAAGT+AGG 0.518277 7.2:-4469964 MS.gene072537:CDS
TTTCTCCAGCATCTAAGCCA+TGG 0.519690 7.2:-4468861 MS.gene072537:CDS
CAAGCTGGATTGGCCAAGAA+AGG 0.521862 7.2:-4471080 MS.gene072537:CDS
GCTTTCTGCAGTTGGTGTTG+TGG 0.524033 7.2:-4469231 MS.gene072537:CDS
TTCTCCAGCATCTAAGCCAT+GGG 0.524215 7.2:-4468860 MS.gene072537:CDS
AATGGTCTATCGGTGAACTC+TGG 0.526436 7.2:-4468892 MS.gene072537:CDS
CCTGACAGTTGATCATAGAC+TGG 0.530356 7.2:-4470016 MS.gene072537:CDS
CCGCTGTGCTATTTGCCAAG+TGG 0.547166 7.2:-4468929 MS.gene072537:CDS
TGTCACTGTTGCATCTGTTG+GGG 0.547608 7.2:-4470082 MS.gene072537:CDS
TTGAAGTAGGTGGTAATACA+GGG 0.548361 7.2:+4469330 None:intergenic
TGACACGGAGTTTCAGAAGA+AGG 0.553825 7.2:-4470231 MS.gene072537:CDS
CGGCCAATCAAAGTGGCCAA+TGG 0.555333 7.2:+4471149 None:intergenic
GTTCTGCAATGCTTATAGAA+AGG 0.558028 7.2:-4469190 MS.gene072537:intron
CAGAGAAATGGGCCTTCCCA+TGG 0.558873 7.2:+4468844 None:intergenic
AAACGCGGTTGATGGATCCC+CGG 0.560628 7.2:+4471016 None:intergenic
GGAAGAGAATGTAGAAGAGA+GGG 0.565211 7.2:-4469995 MS.gene072537:CDS
GGTAATACAGGGTGGTCAGA+AGG 0.568381 7.2:+4469341 None:intergenic
TCAATTGGAGACACAGATGT+GGG 0.570505 7.2:-4469790 MS.gene072537:CDS
TTAGATGCTGGAGAAAAGAA+AGG 0.572490 7.2:+4468868 None:intergenic
TCTAAGATCTAGAGGCCTGA+AGG 0.576729 7.2:-4469396 MS.gene072537:CDS
ACTTTCACTTGCTTAACATG+TGG 0.580187 7.2:+4469748 None:intergenic
CATTTCTCTGCACAAACTGT+CGG 0.582330 7.2:-4468831 MS.gene072537:CDS
AAGATGCCATGGAAGGAAAG+AGG 0.583246 7.2:-4468801 MS.gene072537:CDS
CCACCGGGCCAGCAGCGAAG+AGG 0.584691 7.2:+4469829 None:intergenic
CCTCTTCGCTGCTGGCCCGG+TGG 0.584827 7.2:-4469829 MS.gene072537:CDS
AAGATATCAACAGGGATGCA+TGG 0.585657 7.2:-4470298 MS.gene072537:CDS
CTAGATAGGCACAATCCACC+GGG 0.587266 7.2:+4469814 None:intergenic
CCTGAGTATCTAATATGCAA+CGG 0.590038 7.2:+4470055 None:intergenic
GAGCGTGTTACTGCCAGTGG+TGG 0.591453 7.2:-4469973 MS.gene072537:CDS
TGAGTAAACGTGAATTGTCA+AGG 0.591578 7.2:-4471190 MS.gene072537:CDS
GATTACTATGCTGTAACGGT+AGG 0.591791 7.2:+4468769 None:intergenic
ATAAAGTAATACCGCAAAGA+CGG 0.592761 7.2:+4470992 None:intergenic
GCATCCCTGTTGATATCTTG+CGG 0.595250 7.2:+4470302 None:intergenic
ATCAATTGGAGACACAGATG+TGG 0.598665 7.2:-4469791 MS.gene072537:CDS
AGTGTCCCAAATACCATCAG+AGG 0.599906 7.2:+4469587 None:intergenic
TTCACCGATAGACCATTACC+AGG 0.600145 7.2:+4468898 None:intergenic
GTGGCCAATGGAACTGGTGA+TGG 0.600467 7.2:+4471161 None:intergenic
CTTTCTCATTTCGAATCTCG+CGG 0.603912 7.2:+4471129 None:intergenic
TACCGCAAAGACGGAAAACG+CGG 0.607314 7.2:+4471001 None:intergenic
AGGTAGACCCCGACATGACA+TGG 0.607364 7.2:+4469545 None:intergenic
AGGCTTATTATAGCCTCTGA+TGG 0.608901 7.2:-4469600 MS.gene072537:CDS
AACAACTAGAGCGCGAGGAA+GGG 0.608942 7.2:+4470268 None:intergenic
ATATGGCCGCCATGTCATGT+CGG 0.614370 7.2:-4469554 MS.gene072537:CDS
CGTTGCATATTAGATACTCA+GGG 0.617011 7.2:-4470054 MS.gene072537:CDS
AGATGATTACTATGCTGTAA+CGG 0.617305 7.2:+4468765 None:intergenic
GTCATGTCGGGGTCTACCTG+CGG 0.618990 7.2:-4469541 MS.gene072537:CDS
AGGGAGCGTGTTACTGCCAG+TGG 0.622185 7.2:-4469976 MS.gene072537:CDS
AAACCAACAACTAGAGCGCG+AGG 0.623767 7.2:+4470263 None:intergenic
AGGACGACTCAATATATTTG+GGG 0.625135 7.2:-4469944 MS.gene072537:CDS
TTTCTTTCCAAAGAGAAGTG+TGG 0.629336 7.2:+4469286 None:intergenic
CAATTGGAGACACAGATGTG+GGG 0.631303 7.2:-4469789 MS.gene072537:CDS
CAGGAAGCTCTAAGATCTAG+AGG 0.631425 7.2:-4469404 MS.gene072537:CDS
CCAGCATCTAAGCCATGGGA+AGG 0.633480 7.2:-4468856 MS.gene072537:CDS
AACTGCAGAAAGCTTGCTAG+TGG 0.637588 7.2:+4469241 None:intergenic
GGAGCTTGCTGCAAAGCTGG+TGG 0.644503 7.2:-4469520 MS.gene072537:CDS
AGATTGCCACAGGGTTCCCG+GGG 0.645904 7.2:-4471033 MS.gene072537:CDS
AATTGGAGACACAGATGTGG+GGG 0.647919 7.2:-4469788 MS.gene072537:CDS
GACACGGAGTTTCAGAAGAA+GGG 0.648948 7.2:-4470230 MS.gene072537:intron
ATGGCCGCCATGTCATGTCG+GGG 0.652224 7.2:-4469552 MS.gene072537:CDS
AATCTCGCGGCCAATCAAAG+TGG 0.661716 7.2:+4471142 None:intergenic
AATCAAAACAGATTGCCACA+GGG 0.679930 7.2:-4471042 MS.gene072537:CDS
CACCGATAGACCATTACCAG+GGG 0.684240 7.2:+4468900 None:intergenic
ATGGATCCCCGGGAACCCTG+TGG 0.685150 7.2:+4471027 None:intergenic
GGACGACTCAATATATTTGG+GGG 0.690993 7.2:-4469943 MS.gene072537:CDS
TCACCGATAGACCATTACCA+GGG 0.694420 7.2:+4468899 None:intergenic
AAGGAATAATATCTACAACA+AGG 0.707247 7.2:+4469360 None:intergenic
ACCGATAGACCATTACCAGG+GGG 0.728167 7.2:+4468901 None:intergenic
TGCATATTAGATACTCAGGG+AGG 0.745767 7.2:-4470051 MS.gene072537:CDS
AAGTAGGTGGTAATACAGGG+TGG 0.749203 7.2:+4469333 None:intergenic
TAGACCCCGACATGACATGG+CGG 0.769473 7.2:+4469548 None:intergenic
CCACTTGGCAAATAGCACAG+CGG 0.793054 7.2:+4468929 None:intergenic
GATACCGCAAGATATCAACA+GGG 0.804220 7.2:-4470306 MS.gene072537:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTGAGTTTTAAGAAAT+TGG - chr7.2:4469075-4469094 MS.gene072537:intron 15.0%
!! AATGCAAATATGAATTTAGT+TGG + chr7.2:4470818-4470837 None:intergenic 20.0%
!! AGTAAATAAGCAAATCTAAA+CGG + chr7.2:4469195-4469214 None:intergenic 20.0%
!! ATGCAAATATGAATTTAGTT+GGG + chr7.2:4470817-4470836 None:intergenic 20.0%
!!! AAATTATCCTTTTTCCTATT+TGG - chr7.2:4470920-4470939 MS.gene072537:intron 20.0%
!!! AATTATCCTTTTTCCTATTT+GGG - chr7.2:4470921-4470940 MS.gene072537:intron 20.0%
! AAAGAACGTAATAATGAAAC+CGG + chr7.2:4470246-4470265 None:intergenic 25.0%
! AACTCAACTCAAATAACTAT+AGG + chr7.2:4469016-4469035 None:intergenic 25.0%
! AAGGAATAATATCTACAACA+AGG + chr7.2:4470608-4470627 None:intergenic 25.0%
! ACATCTTAATTTCATACACA+GGG - chr7.2:4469813-4469832 MS.gene072537:CDS 25.0%
! ACATTTATAAGTAACAAGTG+GGG - chr7.2:4469507-4469526 MS.gene072537:intron 25.0%
! ATCTCAGAATTCTTATCAAA+TGG + chr7.2:4471013-4471032 None:intergenic 25.0%
! CACATTTATAAGTAACAAGT+GGG - chr7.2:4469506-4469525 MS.gene072537:intron 25.0%
! TCACATTTATAAGTAACAAG+TGG - chr7.2:4469505-4469524 MS.gene072537:intron 25.0%
! TGTATATCTTGAAGTGTAAT+AGG - chr7.2:4470837-4470856 MS.gene072537:intron 25.0%
! TTAAGTAACTGTTACTAGAA+GGG + chr7.2:4470075-4470094 None:intergenic 25.0%
! TTTAAGTAACTGTTACTAGA+AGG + chr7.2:4470076-4470095 None:intergenic 25.0%
!! CATTATTACGTTCTTTTCTT+TGG - chr7.2:4470250-4470269 MS.gene072537:CDS 25.0%
!! GTTGATAAGGAATTCTTAAT+TGG - chr7.2:4469559-4469578 MS.gene072537:CDS 25.0%
!!! TTATGCTTCTTTTTTGAAGT+AGG + chr7.2:4470651-4470670 None:intergenic 25.0%
AAAGTAATCTTCTCCTTTCT+TGG + chr7.2:4468901-4468920 None:intergenic 30.0%
AATAATATCTACAACAAGGC+AGG + chr7.2:4470604-4470623 None:intergenic 30.0%
ACAGAAATATACACCCAAAT+AGG + chr7.2:4470937-4470956 None:intergenic 30.0%
ATAAAGTAATACCGCAAAGA+CGG + chr7.2:4468976-4468995 None:intergenic 30.0%
ATTAAGCTGAAAACAGCTTA+TGG + chr7.2:4469275-4469294 None:intergenic 30.0%
ATTTCATTCCAATCACTAGT+TGG + chr7.2:4470904-4470923 None:intergenic 30.0%
CAATGGTTATGATGTTGATA+AGG - chr7.2:4469546-4469565 MS.gene072537:CDS 30.0%
CATCTTAATTTCATACACAG+GGG - chr7.2:4469814-4469833 MS.gene072537:CDS 30.0%
GACATCTTAATTTCATACAC+AGG - chr7.2:4469812-4469831 MS.gene072537:CDS 30.0%
GAGATACATTTGTCTTTCTT+CGG - chr7.2:4469160-4469179 MS.gene072537:intron 30.0%
GGACACTTTATCTAATGATA+TGG - chr7.2:4470394-4470413 MS.gene072537:intron 30.0%
GGGAGAAAAGAAAAGAAAAA+AGG + chr7.2:4470542-4470561 None:intergenic 30.0%
TAGGACGACTCAATATATTT+GGG - chr7.2:4470020-4470039 MS.gene072537:CDS 30.0%
TATACACCCAAATAGGAAAA+AGG + chr7.2:4470930-4470949 None:intergenic 30.0%
TATCTTAACCAACTAGTGAT+TGG - chr7.2:4470893-4470912 MS.gene072537:intron 30.0%
TGATTGTGAGAAATCTAACT+TGG + chr7.2:4470304-4470323 None:intergenic 30.0%
TGCGGTATTACTTTATTCTT+TGG - chr7.2:4468980-4468999 MS.gene072537:intron 30.0%
TTGTTCGCAAATATGTTTGT+AGG - chr7.2:4470108-4470127 MS.gene072537:CDS 30.0%
! AAAGTGCTTGTAAGCATTTA+GGG + chr7.2:4469414-4469433 None:intergenic 30.0%
! ATCAAGTTGTTTATCCAAAC+AGG - chr7.2:4469434-4469453 MS.gene072537:intron 30.0%
! ATTTGTCTTTCTTCGGTTTT+AGG - chr7.2:4469167-4469186 MS.gene072537:intron 30.0%
! CTTAATTGGCAGATTTTTGA+CGG - chr7.2:4469573-4469592 MS.gene072537:CDS 30.0%
! GAAAAACCTTTTGTCAAGTT+TGG - chr7.2:4468861-4468880 MS.gene072537:CDS 30.0%
! TAAAGTGCTTGTAAGCATTT+AGG + chr7.2:4469415-4469434 None:intergenic 30.0%
! TTAATTGGCAGATTTTTGAC+GGG - chr7.2:4469574-4469593 MS.gene072537:CDS 30.0%
! TTTTTCTTTTCTTTTCTCCC+AGG - chr7.2:4470542-4470561 MS.gene072537:intron 30.0%
!! AGACTGTTTGAGACATTTTA+TGG - chr7.2:4469231-4469250 MS.gene072537:CDS 30.0%
!! CATTTGTTATAGTTGATGGA+TGG - chr7.2:4469858-4469877 MS.gene072537:intron 30.0%
!! GCTACATTTGTTATAGTTGA+TGG - chr7.2:4469854-4469873 MS.gene072537:intron 30.0%
!! TCCATTTTTCTTAAAACTGC+AGG - chr7.2:4470972-4470991 MS.gene072537:intron 30.0%
AACAAAAAAGATGCCATGGA+AGG - chr7.2:4471157-4471176 MS.gene072537:CDS 35.0%
AATCAAAACAGATTGCCACA+GGG - chr7.2:4468923-4468942 MS.gene072537:CDS 35.0%
ACTTGCTTAACATGTGGTAT+TGG + chr7.2:4470214-4470233 None:intergenic 35.0%
ACTTTCACTTGCTTAACATG+TGG + chr7.2:4470220-4470239 None:intergenic 35.0%
AGGACGACTCAATATATTTG+GGG - chr7.2:4470021-4470040 MS.gene072537:CDS 35.0%
ATCAACATCATAACCATTGC+AGG + chr7.2:4469545-4469564 None:intergenic 35.0%
CCTGAGTATCTAATATGCAA+CGG + chr7.2:4469913-4469932 None:intergenic 35.0%
CGTTGCATATTAGATACTCA+GGG - chr7.2:4469911-4469930 MS.gene072537:intron 35.0%
CTGAGTATCTAATATGCAAC+GGG + chr7.2:4469912-4469931 None:intergenic 35.0%
GCAATGCTTATAGAAAGGTA+TGG - chr7.2:4470780-4470799 MS.gene072537:intron 35.0%
GCATCAATTTATTCCTGCAA+TGG - chr7.2:4469529-4469548 MS.gene072537:CDS 35.0%
GTAGGACGACTCAATATATT+TGG - chr7.2:4470019-4470038 MS.gene072537:CDS 35.0%
GTTCTGCAATGCTTATAGAA+AGG - chr7.2:4470775-4470794 MS.gene072537:intron 35.0%
TAATCAAAACAGATTGCCAC+AGG - chr7.2:4468922-4468941 MS.gene072537:CDS 35.0%
TATAGCCTCTGATGGTATTT+GGG - chr7.2:4470373-4470392 MS.gene072537:CDS 35.0%
TCGCAAATATGTTTGTAGGT+AGG - chr7.2:4470112-4470131 MS.gene072537:CDS 35.0%
TGAGTAAACGTGAATTGTCA+AGG - chr7.2:4468775-4468794 MS.gene072537:CDS 35.0%
TGGAAGTTTATTCTGCATAG+TGG - chr7.2:4469131-4469150 MS.gene072537:intron 35.0%
TGTCTCCAATTGATCTAGAT+AGG + chr7.2:4470168-4470187 None:intergenic 35.0%
TGTTACTAGAAGGGAAAAAG+TGG + chr7.2:4470066-4470085 None:intergenic 35.0%
TTAGATGCTGGAGAAAAGAA+AGG + chr7.2:4471100-4471119 None:intergenic 35.0%
TTATAGCCTCTGATGGTATT+TGG - chr7.2:4470372-4470391 MS.gene072537:CDS 35.0%
TTGAAGTAGGTGGTAATACA+GGG + chr7.2:4470638-4470657 None:intergenic 35.0%
TTGTGCCTATCTAGATCAAT+TGG - chr7.2:4470160-4470179 MS.gene072537:intron 35.0%
TTTCTTTCCAAAGAGAAGTG+TGG + chr7.2:4470682-4470701 None:intergenic 35.0%
! GACATTCTTCTCACATTTTC+TGG - chr7.2:4470485-4470504 MS.gene072537:intron 35.0%
! TGCTTATAGAAAGGTATGGA+TGG - chr7.2:4470784-4470803 MS.gene072537:intron 35.0%
! TTATTCTGCATAGTGGAGAA+TGG - chr7.2:4469138-4469157 MS.gene072537:intron 35.0%
! TTTGAAGTAGGTGGTAATAC+AGG + chr7.2:4470639-4470658 None:intergenic 35.0%
! TTTTCTTAAAACTGCAGGCT+TGG - chr7.2:4470977-4470996 MS.gene072537:intron 35.0%
!! TCTTCTCACATTTTCTGGAA+TGG - chr7.2:4470490-4470509 MS.gene072537:intron 35.0%
!! TCTTTGGTGTCTCTTATATG+TGG - chr7.2:4470266-4470285 MS.gene072537:CDS 35.0%
!!! CATTTTCTGGAATGGATGTT+TGG - chr7.2:4470498-4470517 MS.gene072537:intron 35.0%
!!! GCCTGCAGTTTTAAGAAAAA+TGG + chr7.2:4470976-4470995 None:intergenic 35.0%
!!! TGCTTCTTTTTTGAAGTAGG+TGG + chr7.2:4470648-4470667 None:intergenic 35.0%
AAGATATCAACAGGGATGCA+TGG - chr7.2:4469667-4469686 MS.gene072537:intron 40.0%
AGGCTTATTATAGCCTCTGA+TGG - chr7.2:4470365-4470384 MS.gene072537:CDS 40.0%
ATCAATTGGAGACACAGATG+TGG - chr7.2:4470174-4470193 MS.gene072537:intron 40.0%
ATCCATGAAGCAAGCAAACA+AGG + chr7.2:4469772-4469791 None:intergenic 40.0%
ATGCTAACCACACTTCTCTT+TGG - chr7.2:4470672-4470691 MS.gene072537:intron 40.0%
CAATATATTTGGGGGCAATG+AGG - chr7.2:4470030-4470049 MS.gene072537:CDS 40.0%
CATTTCTCTGCACAAACTGT+CGG - chr7.2:4471134-4471153 MS.gene072537:CDS 40.0%
CCGTTGCATATTAGATACTC+AGG - chr7.2:4469910-4469929 MS.gene072537:intron 40.0%
CTTTCTCATTTCGAATCTCG+CGG + chr7.2:4468839-4468858 None:intergenic 40.0%
GACAGTTTGTGCAGAGAAAT+GGG + chr7.2:4471135-4471154 None:intergenic 40.0%
GACATCTACTAAGTCCTGTT+TGG + chr7.2:4469451-4469470 None:intergenic 40.0%
GATACCGCAAGATATCAACA+GGG - chr7.2:4469659-4469678 MS.gene072537:intron 40.0%
GCTTGTCCAAACTTGACAAA+AGG + chr7.2:4468870-4468889 None:intergenic 40.0%
GGAAGAGAATGTAGAAGAGA+GGG - chr7.2:4469970-4469989 MS.gene072537:CDS 40.0%
GGACGACTCAATATATTTGG+GGG - chr7.2:4470022-4470041 MS.gene072537:CDS 40.0%
GTTGAGAGTTGAGTATGAGT+TGG - chr7.2:4469111-4469130 MS.gene072537:intron 40.0%
TCAATTGGAGACACAGATGT+GGG - chr7.2:4470175-4470194 MS.gene072537:intron 40.0%
TCGGAACAAAAAAGATGCCA+TGG - chr7.2:4471153-4471172 MS.gene072537:CDS 40.0%
TCTAGATCTTAGAGCTTCCT+GGG + chr7.2:4470562-4470581 None:intergenic 40.0%
TGCATATTAGATACTCAGGG+AGG - chr7.2:4469914-4469933 MS.gene072537:intron 40.0%
TGGAAGAGAATGTAGAAGAG+AGG - chr7.2:4469969-4469988 MS.gene072537:CDS 40.0%
TTAAGCAAGTGAAAGTGAGC+CGG - chr7.2:4470224-4470243 MS.gene072537:intron 40.0%
TTTGTCAAGTTTGGACAAGC+TGG - chr7.2:4468870-4468889 MS.gene072537:CDS 40.0%
! ATAGAAAGGTATGGATGGCA+TGG - chr7.2:4470789-4470808 MS.gene072537:intron 40.0%
! TTAAAACTGCAGGCTTGGTA+AGG - chr7.2:4470982-4471001 MS.gene072537:intron 40.0%
!! GCTGTTTTCATAAGCTAGCT+TGG + chr7.2:4469310-4469329 None:intergenic 40.0%
!! GTGGAAGAGCTTTTTGAAGA+GGG - chr7.2:4470753-4470772 MS.gene072537:intron 40.0%
!! TGTGGAAGAGCTTTTTGAAG+AGG - chr7.2:4470752-4470771 MS.gene072537:intron 40.0%
!!! TGGTTTTGTGAAGACTGACA+CGG - chr7.2:4469719-4469738 MS.gene072537:intron 40.0%
AAGATGCCATGGAAGGAAAG+AGG - chr7.2:4471164-4471183 MS.gene072537:CDS 45.0%
AAGTAGGTGGTAATACAGGG+TGG + chr7.2:4470635-4470654 None:intergenic 45.0%
AATGGTCTATCGGTGAACTC+TGG - chr7.2:4471073-4471092 MS.gene072537:CDS 45.0%
AATTGGAGACACAGATGTGG+GGG - chr7.2:4470177-4470196 MS.gene072537:intron 45.0%
ACTAGCAAGCTTTCTGCAGT+TGG - chr7.2:4470726-4470745 MS.gene072537:intron 45.0%
ACTGTCACTGTTGCATCTGT+TGG - chr7.2:4469881-4469900 MS.gene072537:intron 45.0%
AGTGTCCCAAATACCATCAG+AGG + chr7.2:4470381-4470400 None:intergenic 45.0%
ATCAAAGTGGCCAATGGAAC+TGG + chr7.2:4468813-4468832 None:intergenic 45.0%
CAAGTTTGGACAAGCTGGAT+TGG - chr7.2:4468875-4468894 MS.gene072537:CDS 45.0%
CAATTGGAGACACAGATGTG+GGG - chr7.2:4470176-4470195 MS.gene072537:intron 45.0%
CCAGTCTATGATCAACTGTC+AGG + chr7.2:4469952-4469971 None:intergenic 45.0%
CCTGACAGTTGATCATAGAC+TGG - chr7.2:4469949-4469968 MS.gene072537:CDS 45.0%
CGACAGTTTGTGCAGAGAAA+TGG + chr7.2:4471136-4471155 None:intergenic 45.0%
CGATACCGCAAGATATCAAC+AGG - chr7.2:4469658-4469677 MS.gene072537:intron 45.0%
CTCTAGATCTTAGAGCTTCC+TGG + chr7.2:4470563-4470582 None:intergenic 45.0%
CTGTCACTGTTGCATCTGTT+GGG - chr7.2:4469882-4469901 MS.gene072537:intron 45.0%
GACACGGAGTTTCAGAAGAA+GGG - chr7.2:4469735-4469754 MS.gene072537:intron 45.0%
GCATCCCTGTTGATATCTTG+CGG + chr7.2:4469666-4469685 None:intergenic 45.0%
TCACCGATAGACCATTACCA+GGG + chr7.2:4471069-4471088 None:intergenic 45.0%
TCATACACAGGGGAAACTTC+TGG - chr7.2:4469824-4469843 MS.gene072537:CDS 45.0%
TCTAGATAGGCACAATCCAC+CGG + chr7.2:4470155-4470174 None:intergenic 45.0%
TGACACGGAGTTTCAGAAGA+AGG - chr7.2:4469734-4469753 MS.gene072537:intron 45.0%
TGTCACTGTTGCATCTGTTG+GGG - chr7.2:4469883-4469902 MS.gene072537:intron 45.0%
TTCACCGATAGACCATTACC+AGG + chr7.2:4471070-4471089 None:intergenic 45.0%
TTCTCCAGCATCTAAGCCAT+GGG - chr7.2:4471105-4471124 MS.gene072537:CDS 45.0%
TTTCTCCAGCATCTAAGCCA+TGG - chr7.2:4471104-4471123 MS.gene072537:CDS 45.0%
! GTTCCATTGGCCACTTTGAT+TGG - chr7.2:4468813-4468832 MS.gene072537:CDS 45.0%
! TCTAAGATCTAGAGGCCTGA+AGG - chr7.2:4470569-4470588 MS.gene072537:intron 45.0%
! TTTCCTCAGCTTTCAAGTGC+TGG - chr7.2:4470338-4470357 MS.gene072537:CDS 45.0%
!! AACTGCAGAAAGCTTGCTAG+TGG + chr7.2:4470727-4470746 None:intergenic 45.0%
!! AAGCTTGCTAGTGGCTTTGT+TGG + chr7.2:4470718-4470737 None:intergenic 45.0%
!! AGCCTTGTTTGCTTGCTTCA+TGG - chr7.2:4469767-4469786 MS.gene072537:CDS 45.0%
!! CAGATTTTTGACGGGCACAA+CGG - chr7.2:4469582-4469601 MS.gene072537:CDS 45.0%
!! CAGGAAGCTCTAAGATCTAG+AGG - chr7.2:4470561-4470580 MS.gene072537:intron 45.0%
AAACCAACAACTAGAGCGCG+AGG + chr7.2:4469705-4469724 None:intergenic 50.0%
AACAACTAGAGCGCGAGGAA+GGG + chr7.2:4469700-4469719 None:intergenic 50.0%
AAGACGGAAAACGCGGTTGA+TGG + chr7.2:4468960-4468979 None:intergenic 50.0%
AATCTCGCGGCCAATCAAAG+TGG + chr7.2:4468826-4468845 None:intergenic 50.0%
ACCGATAGACCATTACCAGG+GGG + chr7.2:4471067-4471086 None:intergenic 50.0%
ATATGGCCGCCATGTCATGT+CGG - chr7.2:4470411-4470430 MS.gene072537:intron 50.0%
CACCGATAGACCATTACCAG+GGG + chr7.2:4471068-4471087 None:intergenic 50.0%
CCACTTGGCAAATAGCACAG+CGG + chr7.2:4471039-4471058 None:intergenic 50.0%
CTAGATAGGCACAATCCACC+GGG + chr7.2:4470154-4470173 None:intergenic 50.0%
GAAGCCATCACCAGTTCCAT+TGG - chr7.2:4468800-4468819 MS.gene072537:CDS 50.0%
GGCAGGTTGTATCATCCTTC+AGG + chr7.2:4470587-4470606 None:intergenic 50.0%
GGTAATACAGGGTGGTCAGA+AGG + chr7.2:4470627-4470646 None:intergenic 50.0%
TACCGCAAAGACGGAAAACG+CGG + chr7.2:4468967-4468986 None:intergenic 50.0%
TGCTGCAAAGCTGGTGGTTA+AGG - chr7.2:4470451-4470470 MS.gene072537:intron 50.0%
! AACCGCGTTTTCCGTCTTTG+CGG - chr7.2:4468962-4468981 MS.gene072537:CDS 50.0%
!! ACCCCCTGGTAATGGTCTAT+CGG - chr7.2:4471063-4471082 MS.gene072537:CDS 50.0%
!! AGCTTTCAAGTGCTGGTGGA+AGG - chr7.2:4470345-4470364 MS.gene072537:CDS 50.0%
!! CAAGCTGGATTGGCCAAGAA+AGG - chr7.2:4468885-4468904 MS.gene072537:CDS 50.0%
!! GCTTTCTGCAGTTGGTGTTG+TGG - chr7.2:4470734-4470753 MS.gene072537:intron 50.0%
ACAGATTGCCACAGGGTTCC+CGG - chr7.2:4468930-4468949 MS.gene072537:CDS 55.0%
AGGTAGACCCCGACATGACA+TGG + chr7.2:4470423-4470442 None:intergenic 55.0%
CAACAACTAGAGCGCGAGGA+AGG + chr7.2:4469701-4469720 None:intergenic 55.0%
CAACAGGGATGCATGGCTAC+AGG - chr7.2:4469674-4469693 MS.gene072537:intron 55.0%
CAGAGAAATGGGCCTTCCCA+TGG + chr7.2:4471124-4471143 None:intergenic 55.0%
CCACCAGCACTTGAAAGCTG+AGG + chr7.2:4470344-4470363 None:intergenic 55.0%
CCAGCATCTAAGCCATGGGA+AGG - chr7.2:4471109-4471128 MS.gene072537:CDS 55.0%
CCTTCCCATGGCTTAGATGC+TGG + chr7.2:4471112-4471131 None:intergenic 55.0%
CGGCCAATCAAAGTGGCCAA+TGG + chr7.2:4468819-4468838 None:intergenic 55.0%
CTTCCTCGCGCTCTAGTTGT+TGG - chr7.2:4469699-4469718 MS.gene072537:intron 55.0%
GCTGTAACGGTAGGTCTGCT+TGG + chr7.2:4471190-4471209 None:intergenic 55.0%
GCTTGGCCTCTTTCCTTCCA+TGG + chr7.2:4471173-4471192 None:intergenic 55.0%
GTGGATCAACCCCCTGGTAA+TGG - chr7.2:4471055-4471074 MS.gene072537:CDS 55.0%
GTGGCCAATGGAACTGGTGA+TGG + chr7.2:4468807-4468826 None:intergenic 55.0%
TAGACCCCGACATGACATGG+CGG + chr7.2:4470420-4470439 None:intergenic 55.0%
TATGGCCGCCATGTCATGTC+GGG - chr7.2:4470412-4470431 MS.gene072537:intron 55.0%
! TACCAGGGGGTTGATCCACT+TGG + chr7.2:4471054-4471073 None:intergenic 55.0%
!! AAACGCGGTTGATGGATCCC+CGG + chr7.2:4468952-4468971 None:intergenic 55.0%
!! CCGCTGTGCTATTTGCCAAG+TGG - chr7.2:4471036-4471055 MS.gene072537:CDS 55.0%
!! CCTCAGCTTTCAAGTGCTGG+TGG - chr7.2:4470341-4470360 MS.gene072537:CDS 55.0%
AGATTGCCACAGGGTTCCCG+GGG - chr7.2:4468932-4468951 MS.gene072537:CDS 60.0%
AGCTTTGCAGCAAGCTCCGC+AGG + chr7.2:4470443-4470462 None:intergenic 60.0%
AGGTAGGTCCTCTTCGCTGC+TGG - chr7.2:4470128-4470147 MS.gene072537:CDS 60.0%
ATGGCCGCCATGTCATGTCG+GGG - chr7.2:4470413-4470432 MS.gene072537:intron 60.0%
CAGATTGCCACAGGGTTCCC+GGG - chr7.2:4468931-4468950 MS.gene072537:CDS 60.0%
GTCATGTCGGGGTCTACCTG+CGG - chr7.2:4470424-4470443 MS.gene072537:intron 60.0%
TCGTCCTACTTCGCCACCAC+TGG + chr7.2:4470008-4470027 None:intergenic 60.0%
TGCCAAGTGGATCAACCCCC+TGG - chr7.2:4471049-4471068 MS.gene072537:CDS 60.0%
! ACTGCCAGTGGTGGCGAAGT+AGG - chr7.2:4470001-4470020 MS.gene072537:CDS 60.0%
! AGGGAGCGTGTTACTGCCAG+TGG - chr7.2:4469989-4470008 MS.gene072537:CDS 60.0%
! GAGCGTGTTACTGCCAGTGG+TGG - chr7.2:4469992-4470011 MS.gene072537:CDS 60.0%
!! AACGCGGTTGATGGATCCCC+GGG + chr7.2:4468951-4468970 None:intergenic 60.0%
!! GGAGCTTGCTGCAAAGCTGG+TGG - chr7.2:4470445-4470464 MS.gene072537:intron 60.0%
!! TGCGGAGCTTGCTGCAAAGC+TGG - chr7.2:4470442-4470461 MS.gene072537:intron 60.0%
ATGGATCCCCGGGAACCCTG+TGG + chr7.2:4468941-4468960 None:intergenic 65.0%
GGTCCTCTTCGCTGCTGGCC+CGG - chr7.2:4470133-4470152 MS.gene072537:CDS 70.0%
CCACCGGGCCAGCAGCGAAG+AGG + chr7.2:4470139-4470158 None:intergenic 75.0%
CCTCTTCGCTGCTGGCCCGG+TGG - chr7.2:4470136-4470155 MS.gene072537:intron 75.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 4468774 4471213 4468774 ID=MS.gene072537
chr7.2 mRNA 4468774 4471213 4468774 ID=MS.gene072537.t1;Parent=MS.gene072537
chr7.2 exon 4471004 4471213 4471004 ID=MS.gene072537.t1.exon1;Parent=MS.gene072537.t1
chr7.2 CDS 4471004 4471213 4471004 ID=cds.MS.gene072537.t1;Parent=MS.gene072537.t1
chr7.2 exon 4470231 4470402 4470231 ID=MS.gene072537.t1.exon2;Parent=MS.gene072537.t1
chr7.2 CDS 4470231 4470402 4470231 ID=cds.MS.gene072537.t1;Parent=MS.gene072537.t1
chr7.2 exon 4469936 4470153 4469936 ID=MS.gene072537.t1.exon3;Parent=MS.gene072537.t1
chr7.2 CDS 4469936 4470153 4469936 ID=cds.MS.gene072537.t1;Parent=MS.gene072537.t1
chr7.2 exon 4469750 4469857 4469750 ID=MS.gene072537.t1.exon4;Parent=MS.gene072537.t1
chr7.2 CDS 4469750 4469857 4469750 ID=cds.MS.gene072537.t1;Parent=MS.gene072537.t1
chr7.2 exon 4469515 4469640 4469515 ID=MS.gene072537.t1.exon5;Parent=MS.gene072537.t1
chr7.2 CDS 4469515 4469640 4469515 ID=cds.MS.gene072537.t1;Parent=MS.gene072537.t1
chr7.2 exon 4469191 4469423 4469191 ID=MS.gene072537.t1.exon6;Parent=MS.gene072537.t1
chr7.2 CDS 4469191 4469423 4469191 ID=cds.MS.gene072537.t1;Parent=MS.gene072537.t1
chr7.2 exon 4468774 4468993 4468774 ID=MS.gene072537.t1.exon7;Parent=MS.gene072537.t1
chr7.2 CDS 4468774 4468993 4468774 ID=cds.MS.gene072537.t1;Parent=MS.gene072537.t1
Gene Sequence

>MS.gene072537

ATGAGTAAACGTGAATTGTCAAGGATGAAGCCATCACCAGTTCCATTGGCCACTTTGATTGGCCGCGAGATTCGAAATGAGAAAGTTGAAAAACCTTTTGTCAAGTTTGGACAAGCTGGATTGGCCAAGAAAGGAGAAGATTACTTTTTAATCAAAACAGATTGCCACAGGGTTCCCGGGGATCCATCAACCGCGTTTTCCGTCTTTGCGGTATTACTTTATTCTTTGGTTTGTTTGTTCCTATAGTTATTTGAGTTGAGTTACTTTGTTTTAGTGTTTAGTTTAATGTTTGAAAAGAGAAATATTTGAGTTTTAAGAAATTGGATGTAGCATGTTAGTTGAGAGTTGAGTATGAGTTGGAAGTTTATTCTGCATAGTGGAGAATGGAGATACATTTGTCTTTCTTCGGTTTTAGGATCCGTTTAGATTTGCTTATTTACTGACATAAATACTTGTGAGACTGTTTGAGACATTTTATGGAAACAGCTTGCGACATGTCCATAAGCTGTTTTCAGCTTAATACGAGAAACTCTCCAAGCTAGCTTATGAAAACAGCTCATAGTTTATATGAAATTGTTTGACTTTAATTTATCTTTTGTTATAGAAATAGCTTATACATAAGCACTTATATGATAAGCCCTAAATGCTTACAAGCACTTTATCAAGTTGTTTATCCAAACAGGACTTAGTAGATGTCAAACGAGAATTGAAGCATATTATTTTTCTTTTCTTCACATTTATAAGTAACAAGTGGGGCATCAATTTATTCCTGCAATGGTTATGATGTTGATAAGGAATTCTTAATTGGCAGATTTTTGACGGGCACAACGGTATATCAGCTGCTATTTATACAAAAGAAAACTTGCTTAATAATGTTTTGAGTGCGATACCGCAAGATATCAACAGGGATGCATGGCTACAGGCCCTTCCTCGCGCTCTAGTTGTTGGTTTTGTGAAGACTGACACGGAGTTTCAGAAGAAGGGTACATACAAAGCCTTGTTTGCTTGCTTCATGGATTTTCTGTGATCGCTGTTTCTGACATCTTAATTTCATACACAGGGGAAACTTCTGGAACAACAGCTACATTTGTTATAGTTGATGGATGGACTGTCACTGTTGCATCTGTTGGGGATTCCCGTTGCATATTAGATACTCAGGGAGGTGTAGTTTCTCTCCTGACAGTTGATCATAGACTGGAAGAGAATGTAGAAGAGAGGGAGCGTGTTACTGCCAGTGGTGGCGAAGTAGGACGACTCAATATATTTGGGGGCAATGAGGTATGATGTAACCACTTTTTCCCTTCTAGTAACAGTTACTTAAACTCAACTGATTTTTGTTCGCAAATATGTTTGTAGGTAGGTCCTCTTCGCTGCTGGCCCGGTGGATTGTGCCTATCTAGATCAATTGGAGACACAGATGTGGGGGAATATATCGTACCAATACCACATGTTAAGCAAGTGAAAGTGAGCCGGTTTCATTATTACGTTCTTTTCTTTGGTGTCTCTTATATGTGGAAGCATTCATTTCCAAGTTAGATTTCTCACAATCATTATTTGTCTGTCGTTTCCTCAGCTTTCAAGTGCTGGTGGAAGGCTTATTATAGCCTCTGATGGTATTTGGGACACTTTATCTAATGATATGGCCGCCATGTCATGTCGGGGTCTACCTGCGGAGCTTGCTGCAAAGCTGGTGGTTAAGGTGATAAGTTCTGACATTCTTCTCACATTTTCTGGAATGGATGTTTGGTTATCTTATTTAGTAAATCCTTTTTTCTTTTCTTTTCTCCCAGGAAGCTCTAAGATCTAGAGGCCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCTGACCACCCTGTATTACCACCTACTTCAAAAAAGAAGCATAATATGCTAACCACACTTCTCTTTGGAAAGAAATCTGAGAACTCTACCAACAAAGCCACTAGCAAGCTTTCTGCAGTTGGTGTTGTGGAAGAGCTTTTTGAAGAGGGTTCTGCAATGCTTATAGAAAGGTATGGATGGCATGGAGCCCAACTAAATTCATATTTGCATTGTATATCTTGAAGTGTAATAGGAAATTGTCTTTATTTATTTACTGAATATTAATTTATCTTAACCAACTAGTGATTGGAATGAAATTATCCTTTTTCCTATTTGGGTGTATATTTCTGTGCAATTCATAAGTCTTCCATTTTTCTTAAAACTGCAGGCTTGGTAAGGATTTTCCATTTGATAAGAATTCTGAGATTTTCCGCTGTGCTATTTGCCAAGTGGATCAACCCCCTGGTAATGGTCTATCGGTGAACTCTGGACCTTTCTTTTCTCCAGCATCTAAGCCATGGGAAGGCCCATTTCTCTGCACAAACTGTCGGAACAAAAAAGATGCCATGGAAGGAAAGAGGCCAAGCAGACCTACCGTTACAGCATAG

Protein sequence

>MS.gene072537.t1

MSKRELSRMKPSPVPLATLIGREIRNEKVEKPFVKFGQAGLAKKGEDYFLIKTDCHRVPGDPSTAFSVFAIFDGHNGISAAIYTKENLLNNVLSAIPQDINRDAWLQALPRALVVGFVKTDTEFQKKGETSGTTATFVIVDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNIFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSSAGGRLIIASDGIWDTLSNDMAAMSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDHPVLPPTSKKKHNMLTTLLFGKKSENSTNKATSKLSAVGVVEELFEEGSAMLIERLGKDFPFDKNSEIFRCAICQVDQPPGNGLSVNSGPFFSPASKPWEGPFLCTNCRNKKDAMEGKRPSRPTVTA