AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072605

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072605.t1 MTR_7g111320 91.185 692 48 4 1 680 1 691 0.0 1264
MS.gene072605.t1 MTR_1g084980 47.619 735 292 17 2 668 1 710 0.0 575
MS.gene072605.t1 MTR_1g084980 47.664 535 224 12 2 493 1 522 1.71e-139 420
MS.gene072605.t1 MTR_1g069155 43.627 204 81 5 371 544 260 459 6.44e-37 145
MS.gene072605.t1 MTR_7g099540 42.381 210 88 7 370 551 189 393 3.05e-36 142
MS.gene072605.t1 MTR_7g099540 42.056 214 89 7 370 551 189 399 1.33e-34 137
MS.gene072605.t1 MTR_3g449770 31.910 398 219 11 243 627 148 506 4.21e-34 137
MS.gene072605.t1 MTR_7g110810 52.555 137 53 5 377 507 152 282 9.20e-30 122
MS.gene072605.t1 MTR_1g019240 57.303 89 35 1 431 519 86 171 1.04e-24 104
MS.gene072605.t1 MTR_5g017040 57.895 95 32 3 439 532 114 201 1.81e-23 102
MS.gene072605.t1 MTR_4g131160 48.684 76 36 1 432 504 201 276 6.50e-18 87.0
MS.gene072605.t1 MTR_4g131160 48.684 76 36 1 432 504 198 273 6.51e-18 87.0
MS.gene072605.t1 MTR_1g080890 47.761 67 35 0 432 498 195 261 5.54e-16 80.5
MS.gene072605.t1 MTR_5g005110 32.710 107 68 1 428 534 222 324 1.00e-13 73.2
MS.gene072605.t1 MTR_1g017350 50.000 64 31 1 432 494 262 325 1.29e-13 73.9
MS.gene072605.t1 MTR_1g017350 50.000 64 31 1 432 494 262 325 1.44e-13 73.6
MS.gene072605.t1 MTR_1g017350 50.000 64 31 1 432 494 262 325 1.49e-13 73.6
MS.gene072605.t1 MTR_1g017350 50.000 64 31 1 432 494 262 325 1.62e-13 73.6
MS.gene072605.t1 MTR_1g106470 40.789 76 40 1 433 503 194 269 1.73e-13 72.0
MS.gene072605.t1 MTR_1g106480 50.877 57 25 1 447 503 86 139 2.36e-13 68.6
MS.gene072605.t1 MTR_1g106460 44.828 58 32 0 446 503 254 311 2.47e-13 72.0
MS.gene072605.t1 MTR_4g070320 38.462 104 61 2 392 494 107 208 2.60e-13 72.4
MS.gene072605.t1 MTR_3g116770 43.421 76 40 2 420 494 183 256 7.23e-13 71.2
MS.gene072605.t1 MTR_3g116770 43.421 76 40 2 420 494 183 256 7.40e-13 71.2
MS.gene072605.t1 MTR_3g103030 45.902 61 33 0 443 503 242 302 7.69e-13 70.5
MS.gene072605.t1 MTR_8g062240 45.312 64 34 1 432 494 153 216 8.33e-13 69.7
MS.gene072605.t1 MTR_5g037250 40.230 87 47 2 409 494 95 177 9.17e-13 68.9
MS.gene072605.t1 MTR_7g053410 46.875 64 33 1 432 494 319 382 2.62e-12 70.1
MS.gene072605.t1 MTR_7g053410 46.875 64 33 1 432 494 319 382 2.75e-12 70.1
MS.gene072605.t1 MTR_1g018090 45.902 61 33 0 443 503 287 347 2.92e-12 69.3
MS.gene072605.t1 MTR_8g012290 46.875 64 33 1 432 494 293 356 3.43e-12 69.7
MS.gene072605.t1 MTR_8g012290 46.875 64 33 1 432 494 293 356 3.45e-12 69.7
MS.gene072605.t1 MTR_8g065740 46.875 64 33 1 432 494 307 370 3.88e-12 69.3
MS.gene072605.t1 MTR_5g048860 46.875 64 33 1 432 494 367 430 3.99e-12 69.7
MS.gene072605.t1 MTR_3g498825 45.312 64 34 1 432 494 149 212 1.15e-11 67.0
MS.gene072605.t1 MTR_8g099880 37.662 77 47 1 419 494 134 210 5.58e-11 65.1
MS.gene072605.t1 MTR_5g079500 45.000 60 33 0 433 492 221 280 7.58e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072605.t1 AT1G09530 31.857 587 277 19 2 579 1 473 3.67e-48 177
MS.gene072605.t1 AT1G09530 31.857 587 277 19 2 579 1 473 3.67e-48 177
MS.gene072605.t1 AT1G09530 31.857 587 277 19 2 579 1 473 3.67e-48 177
MS.gene072605.t1 AT1G09530 31.857 587 277 19 2 579 1 473 3.67e-48 177
MS.gene072605.t1 AT1G09530 31.857 587 277 19 2 579 1 473 3.67e-48 177
MS.gene072605.t1 AT1G09530 31.857 587 277 19 2 579 1 473 3.67e-48 177
MS.gene072605.t1 AT2G46970 37.643 263 132 10 368 620 130 370 4.75e-32 129
MS.gene072605.t1 AT2G46970 37.643 263 132 10 368 620 139 379 7.03e-32 128
MS.gene072605.t1 AT2G46970 37.643 263 132 10 368 620 161 401 8.90e-32 128
MS.gene072605.t1 AT2G20180 41.935 186 79 6 371 536 155 331 2.95e-30 124
MS.gene072605.t1 AT2G20180 41.935 186 79 6 371 536 155 331 2.95e-30 124
MS.gene072605.t1 AT2G20180 41.935 186 79 6 371 536 155 331 2.95e-30 124
MS.gene072605.t1 AT2G20180 40.394 203 90 7 356 536 209 402 1.36e-29 123
MS.gene072605.t1 AT2G20180 40.394 203 90 7 356 536 209 402 1.36e-29 123
MS.gene072605.t1 AT2G20180 40.394 203 90 7 356 536 209 402 1.36e-29 123
MS.gene072605.t1 AT2G20180 40.394 203 90 7 356 536 209 402 1.36e-29 123
MS.gene072605.t1 AT2G20180 50.407 123 50 2 371 491 226 339 5.67e-27 113
MS.gene072605.t1 AT4G28800 44.218 147 66 6 423 563 242 378 2.09e-25 110
MS.gene072605.t1 AT4G36930 67.105 76 25 0 436 511 197 272 5.00e-24 105
MS.gene072605.t1 AT5G67110 65.333 75 24 2 433 506 90 163 5.69e-23 98.2
MS.gene072605.t1 AT4G28800 42.857 147 62 6 423 563 254 384 6.22e-23 102
MS.gene072605.t1 AT4G28815 48.485 99 47 2 420 517 58 153 6.68e-23 98.6
MS.gene072605.t1 AT4G28790 42.636 129 62 3 414 532 255 381 8.99e-23 102
MS.gene072605.t1 AT4G28815 48.485 99 47 2 420 517 134 229 3.09e-22 98.6
MS.gene072605.t1 AT3G59060 48.252 143 53 4 432 567 252 380 4.05e-22 100
MS.gene072605.t1 AT3G59060 48.252 143 53 4 432 567 252 380 4.05e-22 100
MS.gene072605.t1 AT3G59060 48.252 143 53 4 432 567 252 380 4.05e-22 100
MS.gene072605.t1 AT3G59060 48.252 143 53 4 432 567 252 380 4.43e-22 100
MS.gene072605.t1 AT4G00050 49.485 97 39 2 401 493 78 168 3.76e-21 95.1
MS.gene072605.t1 AT4G00050 49.485 97 39 2 401 493 180 270 1.20e-20 95.1
MS.gene072605.t1 AT4G00050 49.485 97 39 2 401 493 180 270 1.50e-20 94.7
MS.gene072605.t1 AT2G43010 81.667 60 11 0 433 492 254 313 6.31e-20 93.6
MS.gene072605.t1 AT2G43010 81.667 60 11 0 433 492 254 313 6.72e-20 93.6
MS.gene072605.t1 AT2G43010 51.163 129 50 3 433 560 254 370 7.11e-20 93.2
MS.gene072605.t1 AT2G43010 81.667 60 11 0 433 492 261 320 8.37e-20 93.2
MS.gene072605.t1 AT2G43010 81.667 60 11 0 433 492 296 355 1.21e-19 93.2
MS.gene072605.t1 AT2G24260 53.731 67 31 0 432 498 37 103 9.86e-19 86.7
MS.gene072605.t1 AT4G28790 58.824 68 28 0 423 490 264 331 1.08e-18 88.6
MS.gene072605.t1 AT3G62090 42.017 119 58 2 433 549 168 277 2.20e-18 87.8
MS.gene072605.t1 AT3G62090 42.017 119 58 2 433 549 185 294 3.55e-18 87.4
MS.gene072605.t1 AT2G24260 55.556 63 28 0 432 494 140 202 3.55e-18 87.0
MS.gene072605.t1 AT4G30980 52.239 67 32 0 432 498 132 198 6.32e-18 85.9
MS.gene072605.t1 AT5G58010 52.239 67 32 0 432 498 101 167 6.85e-18 85.5
MS.gene072605.t1 AT1G02340 36.364 165 71 7 391 542 107 250 8.48e-18 85.1
MS.gene072605.t1 AT1G02340 36.364 165 71 7 391 542 100 243 9.08e-18 84.7
MS.gene072605.t1 AT4G30980 52.239 67 32 0 432 498 180 246 1.75e-17 85.1
MS.gene072605.t1 AT4G28811 56.250 80 34 1 415 493 335 414 7.16e-14 75.5
MS.gene072605.t1 AT1G10120 50.000 66 32 1 430 494 206 271 1.24e-13 73.6
MS.gene072605.t1 AT1G10120 50.000 66 32 1 430 494 206 271 1.24e-13 73.6
MS.gene072605.t1 AT1G68920 29.469 207 129 6 291 494 175 367 1.29e-13 74.3
MS.gene072605.t1 AT3G23690 33.577 137 82 4 362 494 125 256 1.34e-13 73.6
MS.gene072605.t1 AT1G27740 33.043 115 71 2 400 511 140 251 1.65e-13 71.6
MS.gene072605.t1 AT5G61270 47.170 106 50 4 402 506 47 147 3.09e-13 71.2
MS.gene072605.t1 AT5G61270 47.170 106 50 4 402 506 47 147 3.09e-13 71.2
MS.gene072605.t1 AT5G50915 29.762 168 89 6 342 494 48 201 4.43e-13 70.5
MS.gene072605.t1 AT5G50915 29.762 168 89 6 342 494 48 201 4.43e-13 70.5
MS.gene072605.t1 AT2G14760 39.474 76 46 0 428 503 235 310 4.63e-13 71.2
MS.gene072605.t1 AT4G33880 46.032 63 34 0 443 505 279 341 5.68e-13 71.2
MS.gene072605.t1 AT5G61270 51.899 79 37 1 428 506 158 235 6.95e-13 71.2
MS.gene072605.t1 AT2G14760 44.615 65 36 0 439 503 259 323 7.13e-13 70.9
MS.gene072605.t1 AT5G43175 37.647 85 48 2 432 511 132 216 7.83e-13 68.9
MS.gene072605.t1 AT5G50915 29.762 168 89 6 342 494 48 201 9.36e-13 69.7
MS.gene072605.t1 AT5G50915 29.762 168 89 6 342 494 48 201 9.36e-13 69.7
MS.gene072605.t1 AT1G68920 28.502 207 132 5 291 494 175 368 1.28e-12 71.2
MS.gene072605.t1 AT1G68920 28.502 207 132 5 291 494 175 368 1.28e-12 71.2
MS.gene072605.t1 AT1G68920 28.502 207 132 5 291 494 175 368 1.28e-12 71.2
MS.gene072605.t1 AT1G59640 45.312 64 34 1 432 494 138 201 1.50e-12 68.9
MS.gene072605.t1 AT3G07340 46.875 64 33 1 432 494 260 323 1.70e-12 70.5
MS.gene072605.t1 AT1G26260 45.455 66 35 1 430 494 201 266 2.28e-12 69.7
MS.gene072605.t1 AT3G07340 46.875 64 33 1 432 494 260 323 2.29e-12 70.1
MS.gene072605.t1 AT1G26260 45.455 66 35 1 430 494 172 237 2.34e-12 69.3
MS.gene072605.t1 AT5G48560 46.875 64 33 1 432 494 303 366 2.66e-12 70.1
MS.gene072605.t1 AT1G26260 45.455 66 35 1 430 494 223 288 2.83e-12 69.7
MS.gene072605.t1 AT1G26260 45.455 66 35 1 430 494 223 288 2.83e-12 69.7
MS.gene072605.t1 AT1G26260 45.455 66 35 1 430 494 223 288 2.83e-12 69.7
MS.gene072605.t1 AT1G26260 45.455 66 35 1 430 494 223 288 2.83e-12 69.7
MS.gene072605.t1 AT5G48560 46.875 64 33 1 432 494 303 366 3.01e-12 70.1
MS.gene072605.t1 AT1G18400 45.312 64 34 1 432 494 147 210 3.73e-12 67.4
MS.gene072605.t1 AT1G18400 45.312 64 34 1 432 494 147 210 4.26e-12 67.4
MS.gene072605.t1 AT4G34530 43.750 64 35 1 432 494 174 237 4.76e-12 68.2
MS.gene072605.t1 AT1G25330 41.975 81 42 2 415 494 93 169 4.88e-12 66.6
MS.gene072605.t1 AT1G59640 45.312 64 34 1 432 494 138 201 5.86e-12 68.2
MS.gene072605.t1 AT5G62610 45.312 64 34 1 432 494 155 218 6.78e-12 67.0
MS.gene072605.t1 AT5G62610 45.312 64 34 1 432 494 155 218 6.78e-12 67.0
MS.gene072605.t1 AT4G36540 42.188 64 36 1 432 494 143 206 3.14e-11 65.5
MS.gene072605.t1 AT4G36540 42.188 64 36 1 432 494 143 206 3.23e-11 65.5
MS.gene072605.t1 AT2G18300 40.625 64 37 1 432 494 187 250 8.20e-11 64.7
MS.gene072605.t1 AT1G73830 40.625 64 37 1 432 494 149 212 8.46e-11 63.5
MS.gene072605.t1 AT2G18300 40.625 64 37 1 432 494 187 250 8.62e-11 64.3
MS.gene072605.t1 AT1G73830 40.625 64 37 1 432 494 149 212 8.73e-11 63.5

Find 130 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTCAAACAAATCGTTTC+TGG 0.187942 7.1:+4311416 None:intergenic
CAAACTTCCAATCAAGTTCT+TGG 0.266868 7.1:-4310466 MS.gene072605:CDS
AGCCCAAACAATTGAGGATT+TGG 0.271198 7.1:+4308976 None:intergenic
TTCTTTGCTCCCACACGTTC+TGG 0.281144 7.1:+4310694 None:intergenic
GGCTTCACCCTCTAAGTTAA+AGG 0.292607 7.1:-4308818 MS.gene072605:CDS
TCAATTAGATTTAGAGAATC+AGG 0.292631 7.1:-4310880 MS.gene072605:CDS
GTTGCCATGCAAATGGGGTT+GGG 0.298299 7.1:-4309075 MS.gene072605:CDS
CAGGGTTGATTTGAAACCTT+TGG 0.301441 7.1:-4310560 MS.gene072605:CDS
AGACCAAATCCTCAATTGTT+TGG 0.305048 7.1:-4308979 MS.gene072605:CDS
CACTATTTACATCGTAGTTC+TGG 0.309710 7.1:-4311138 MS.gene072605:CDS
AAGGGTCATGATAAATATTC+AGG 0.318516 7.1:-4311312 MS.gene072605:CDS
CGATAGTGCCCATGCTTTGC+TGG 0.321114 7.1:-4308253 MS.gene072605:CDS
AGATTTAGAGAATCAGGTTT+AGG 0.342984 7.1:-4310874 MS.gene072605:CDS
GACCAAATCCTCAATTGTTT+GGG 0.348880 7.1:-4308978 MS.gene072605:CDS
GGTTTCTTACATGAACTATC+TGG 0.353172 7.1:-4311117 MS.gene072605:CDS
GTTTGGGCTTCAAGCTGGTC+AGG 0.356213 7.1:-4308962 MS.gene072605:CDS
TCCTCTGTTTGCTCTGACAA+TGG 0.356829 7.1:-4310382 MS.gene072605:CDS
CATTGGATCCTTTAACTTAG+AGG 0.361856 7.1:+4308810 None:intergenic
ATTGGAAGTTTGATCAACTT+TGG 0.364253 7.1:+4310477 None:intergenic
TTGCCATGCAAATGGGGTTG+GGG 0.365073 7.1:-4309074 MS.gene072605:CDS
GAGTCCATCTCATACTCTTA+AGG 0.368152 7.1:-4311331 MS.gene072605:CDS
CGACGGCATATTTAACTGAT+TGG 0.373186 7.1:+4310933 None:intergenic
GATCATGGACGAGGCGTTAT+GGG 0.378376 7.1:-4310139 MS.gene072605:CDS
ACGATTTGTTTGAGTTGGTT+TGG 0.382384 7.1:-4311410 MS.gene072605:CDS
TCTGGACTTGCTGCTTTACA+TGG 0.382675 7.1:-4309009 MS.gene072605:CDS
TGATCATGGACGAGGCGTTA+TGG 0.385981 7.1:-4310140 MS.gene072605:CDS
TGTTGCCATGCAAATGGGGT+TGG 0.393996 7.1:-4309076 MS.gene072605:CDS
GGCAACACTCATGGGTGAAA+AGG 0.394110 7.1:+4309092 None:intergenic
TTCATTACGGTTGAGGAAGA+TGG 0.397344 7.1:+4310790 None:intergenic
ATTCCTGCTGGTAACGTCAT+AGG 0.398850 7.1:+4309144 None:intergenic
TCATCTTGACTTGAAGAAAC+AGG 0.406226 7.1:+4311210 None:intergenic
TCATCAAAAGTTGATTTAAG+TGG 0.412874 7.1:-4310634 MS.gene072605:CDS
ACTCTCACCAAGAACTTGAT+TGG 0.416264 7.1:+4310459 None:intergenic
ATCAGTCAGTGGAGCCATCC+AGG 0.417657 7.1:-4310579 MS.gene072605:CDS
AGGTCAACCTTGTTGCAATT+CGG 0.419974 7.1:+4309881 None:intergenic
AAAATGGGTGAAATTCATTA+CGG 0.424400 7.1:+4310777 None:intergenic
ACAGCTGATGAGTTCATAAC+AGG 0.425607 7.1:+4308889 None:intergenic
AACTCAAACAAATCGTTTCT+GGG 0.426922 7.1:+4311417 None:intergenic
CTTCCTGTTGCACATACATC+TGG 0.427695 7.1:-4309027 MS.gene072605:CDS
AGTCCAGATGTATGTGCAAC+AGG 0.429077 7.1:+4309024 None:intergenic
CAATTGTTTGGGCTTCAAGC+TGG 0.432706 7.1:-4308967 MS.gene072605:CDS
ATTGACCATGCACTAAAATC+TGG 0.439314 7.1:+4311379 None:intergenic
CATTTGCATGGCAACACTCA+TGG 0.440440 7.1:+4309083 None:intergenic
ACTTACACAGATGATTGATC+TGG 0.443296 7.1:+4311548 None:intergenic
AAGTTTGAGGATTTAGATAA+CGG 0.451329 7.1:-4311255 MS.gene072605:CDS
AAGCAAAGAAAATTTATTTG+TGG 0.456578 7.1:+4311071 None:intergenic
CATGAGTGTTGCCATGCAAA+TGG 0.458192 7.1:-4309082 MS.gene072605:CDS
AACAAAGATGCAGCTGTGAT+AGG 0.462201 7.1:-4310673 MS.gene072605:CDS
CAGAAACGATTTGTTTGAGT+TGG 0.463606 7.1:-4311415 MS.gene072605:CDS
ACTAATGGAAACCGTGGAAT+CGG 0.464726 7.1:-4308839 MS.gene072605:CDS
AGTCCATCTCATACTCTTAA+GGG 0.467462 7.1:-4311330 MS.gene072605:CDS
AAATCTAATTGATTCAAATG+AGG 0.470228 7.1:+4310891 None:intergenic
AATTGCAAGTGAAGAACCCT+TGG 0.474008 7.1:+4310990 None:intergenic
ATGAGTGTTGCCATGCAAAT+GGG 0.476275 7.1:-4309081 MS.gene072605:CDS
TGCCATGCAAATGGGGTTGG+GGG 0.478491 7.1:-4309073 MS.gene072605:CDS
GCAACACTCATGGGTGAAAA+GGG 0.478775 7.1:+4309093 None:intergenic
CTTGGTGAGAGTCGCAGAAA+AGG 0.480139 7.1:-4310448 MS.gene072605:CDS
AACAAATCAAATGTCTATCC+AGG 0.484494 7.1:-4308740 MS.gene072605:intron
GATACATCTTCTTTGCAAGC+AGG 0.485143 7.1:+4310499 None:intergenic
GGTGAAATTCATTACGGTTG+AGG 0.487024 7.1:+4310783 None:intergenic
TGAGTTCATAACAGGCTCTC+CGG 0.490845 7.1:+4308897 None:intergenic
AATCTAATTGATTCAAATGA+GGG 0.495878 7.1:+4310892 None:intergenic
TTTGGGCTTCAAGCTGGTCA+GGG 0.497255 7.1:-4308961 MS.gene072605:CDS
AGGTGAGTTCCTTGAAATTG+AGG 0.498352 7.1:+4309048 None:intergenic
TACAAGGATAGGAAAGTTTG+AGG 0.498732 7.1:-4311268 MS.gene072605:CDS
GCTTGAAGCCCAAACAATTG+AGG 0.502101 7.1:+4308970 None:intergenic
CACTGACTGATGACAATGTA+TGG 0.502818 7.1:+4310591 None:intergenic
AAAGCTAATCTTCAGAACAT+TGG 0.503501 7.1:-4310733 MS.gene072605:CDS
TGCATGTGCTGCATTCCTGC+TGG 0.506406 7.1:+4309132 None:intergenic
GAGTTCATAACAGGCTCTCC+GGG 0.506487 7.1:+4308898 None:intergenic
TAGTGGAACAGAAGGACTAA+TGG 0.508403 7.1:-4308854 MS.gene072605:CDS
TTTCTTCACAATGTGCATGC+TGG 0.509695 7.1:+4310824 None:intergenic
ATTGGATCCTTTAACTTAGA+GGG 0.511226 7.1:+4308811 None:intergenic
AATGAAACAAATACAAGGAT+AGG 0.513186 7.1:-4311279 MS.gene072605:CDS
TTAGGTGAGAATAATACAAA+AGG 0.513763 7.1:-4310856 MS.gene072605:CDS
GGTGTTAAAAGAACTGATCA+TGG 0.513840 7.1:-4310154 MS.gene072605:CDS
TAAACAAGGTATCCTTTCCA+AGG 0.516786 7.1:-4311007 MS.gene072605:CDS
AACATTGAAGCACATGGCAT+TGG 0.518946 7.1:+4308928 None:intergenic
GGCGGATAAAGCTTCAATGC+TGG 0.519274 7.1:-4309354 MS.gene072605:CDS
TTCAGATAGATTGTGCACTT+CGG 0.519860 7.1:+4310096 None:intergenic
AGGAATGCAGCACATGCATG+CGG 0.519863 7.1:-4309127 MS.gene072605:CDS
TCATTACGGTTGAGGAAGAT+GGG 0.521159 7.1:+4310791 None:intergenic
CTTACACAGATGATTGATCT+GGG 0.521769 7.1:+4311549 None:intergenic
TCAAGAGATTTCGGCTCCAA+AGG 0.523726 7.1:+4310544 None:intergenic
TTTACGCAGATTATGACAAT+GGG 0.530246 7.1:-4309186 MS.gene072605:intron
ATTTGATGACGATGATGCCT+TGG 0.533845 7.1:-4311185 MS.gene072605:CDS
TAAAGCTTCAATGCTGGATG+AGG 0.536704 7.1:-4309348 MS.gene072605:CDS
GTTTGAATGAAATTATTACA+AGG 0.536877 7.1:-4311233 MS.gene072605:CDS
GCTGTAGAATTAAATGCTAG+TGG 0.540713 7.1:-4308871 MS.gene072605:CDS
ATTATGACAATGGGAAGTCA+TGG 0.554557 7.1:-4309177 MS.gene072605:CDS
TCATGCAGAGACGAAGAGAC+AGG 0.554875 7.1:-4309940 MS.gene072605:intron
TGTGAGTTCACATTTGACAT+TGG 0.556678 7.1:+4308793 None:intergenic
AGAGAAAGAATACTTGCAGT+TGG 0.557431 7.1:+4309297 None:intergenic
TGGTAGTGTGAAGCAACAAC+TGG 0.558389 7.1:-4308303 MS.gene072605:intron
AGTGCACAATCTATCTGAAA+GGG 0.562116 7.1:-4310092 MS.gene072605:intron
ATTTGCATGGCAACACTCAT+GGG 0.564314 7.1:+4309084 None:intergenic
TTAAATGCTAGTGGAACAGA+AGG 0.566465 7.1:-4308862 MS.gene072605:CDS
AAGTGCACAATCTATCTGAA+AGG 0.566770 7.1:-4310093 MS.gene072605:CDS
TTCATCAAGACCAGAACGTG+TGG 0.573082 7.1:-4310704 MS.gene072605:CDS
ACTTGCTGCTTTACATGGGA+TGG 0.575642 7.1:-4309004 MS.gene072605:CDS
CTGGACTTGCTGCTTTACAT+GGG 0.587526 7.1:-4309008 MS.gene072605:CDS
ATGCCTATGACGTTACCAGC+AGG 0.590867 7.1:-4309147 MS.gene072605:CDS
GGTTTCAAATCAACCCTGGA+TGG 0.593516 7.1:+4310565 None:intergenic
AGAGGGTGAAGCCGATTCCA+CGG 0.595574 7.1:+4308828 None:intergenic
TTAGCTTTCACAATAGCCGC+AGG 0.598322 7.1:+4310748 None:intergenic
GCCTTGGTTGAATTGTGCAA+TGG 0.600384 7.1:-4311169 MS.gene072605:CDS
GGCAGCAAAGTCATTTGTAG+TGG 0.603034 7.1:+4311092 None:intergenic
TGGACTTGAACAATCAAAAG+TGG 0.604767 7.1:-4308280 MS.gene072605:CDS
CAAAGGTTTCAAATCAACCC+TGG 0.605010 7.1:+4310561 None:intergenic
AAACAAGGTATCCTTTCCAA+GGG 0.605300 7.1:-4311006 MS.gene072605:CDS
TCAGTCAGTGGAGCCATCCA+GGG 0.609277 7.1:-4310578 MS.gene072605:CDS
CAGATGTATGTGCAACAGGA+AGG 0.625034 7.1:+4309028 None:intergenic
AAAAGAACTGATCATGGACG+AGG 0.626096 7.1:-4310148 MS.gene072605:CDS
TGACCCTTAAGAGTATGAGA+TGG 0.635956 7.1:+4311327 None:intergenic
CAAGTGAAGAACCCTTGGAA+AGG 0.639273 7.1:+4310995 None:intergenic
TGAGTGTTGCCATGCAAATG+GGG 0.642524 7.1:-4309080 MS.gene072605:CDS
ATGCTAATGAAACAAATACA+AGG 0.649445 7.1:-4311284 MS.gene072605:CDS
TCATCAAGACCAGAACGTGT+GGG 0.654328 7.1:-4310703 MS.gene072605:CDS
TCCATTGCACAATTCAACCA+AGG 0.657257 7.1:+4311168 None:intergenic
AGAAGGACTAATGGAAACCG+TGG 0.662312 7.1:-4308845 MS.gene072605:CDS
GAAGAGACAGGATCAATGAG+AGG 0.663392 7.1:-4309928 MS.gene072605:CDS
TAAGAAAACATTGAAGCACA+TGG 0.666915 7.1:+4308922 None:intergenic
TGACATTGATGCAACAACGA+CGG 0.669946 7.1:+4310916 None:intergenic
TAGTGTGAAGCAACAACTGG+TGG 0.671787 7.1:-4308300 MS.gene072605:CDS
ACTCATACCGAATTGCAACA+AGG 0.682291 7.1:-4309888 MS.gene072605:intron
TTTAGTGACTCTCATAAACA+AGG 0.682360 7.1:-4311021 MS.gene072605:CDS
GCCATTGTCAGAGCAAACAG+AGG 0.710075 7.1:+4310381 None:intergenic
CATACATTGTCATCAGTCAG+TGG 0.712438 7.1:-4310590 MS.gene072605:CDS
TTACACAGATGATTGATCTG+GGG 0.713496 7.1:+4311550 None:intergenic
TGGACTATGAGGATTCTGAG+TGG 0.766905 7.1:-4310309 MS.gene072605:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATAACACAAATTTAA+AGG - chr7.1:4311242-4311261 MS.gene072605:CDS 10.0%
!!! AAATGTTTTAATGATATATT+TGG + chr7.1:4311446-4311465 None:intergenic 10.0%
!! AAAACAAACTAAAATATATC+CGG + chr7.1:4310064-4310083 None:intergenic 15.0%
!!! AGAATCTTTTAAAAAATCTA+CGG - chr7.1:4309407-4309426 MS.gene072605:intron 15.0%
!!! ATTTTTGTATCAAATCATAT+TGG - chr7.1:4310097-4310116 MS.gene072605:CDS 15.0%
!!! GTTTTTGTTTTATTTTGTTA+TGG - chr7.1:4311506-4311525 MS.gene072605:intron 15.0%
!!! TTATTTCTACTTTTCTTAAA+AGG + chr7.1:4309794-4309813 None:intergenic 15.0%
!! AAAGATCTTACACTAATAAT+GGG - chr7.1:4310377-4310396 MS.gene072605:CDS 20.0%
!! AAGCAAAGAAAATTTATTTG+TGG + chr7.1:4308761-4308780 None:intergenic 20.0%
!! AATAAAACAAAAACATCAAC+AGG + chr7.1:4311500-4311519 None:intergenic 20.0%
!! AATTCAAAAGAACAATTTAG+TGG + chr7.1:4311408-4311427 None:intergenic 20.0%
!! ATTGAAGGAAAATTGTAAAA+GGG + chr7.1:4310559-4310578 None:intergenic 20.0%
!! CAGACAATACTTAAAATAAA+CGG + chr7.1:4311208-4311227 None:intergenic 20.0%
!! CATGTTTCATATTCAAATTT+AGG + chr7.1:4310171-4310190 None:intergenic 20.0%
!! GTTTGAATGAAATTATTACA+AGG - chr7.1:4308596-4308615 MS.gene072605:intron 20.0%
!! TAAAGATCTTACACTAATAA+TGG - chr7.1:4310376-4310395 MS.gene072605:CDS 20.0%
!!! AAATCTAATTGATTCAAATG+AGG + chr7.1:4308941-4308960 None:intergenic 20.0%
!!! AATATTTTAGTTAGATGATG+TGG + chr7.1:4310288-4310307 None:intergenic 20.0%
!!! AATCTAATTGATTCAAATGA+GGG + chr7.1:4308940-4308959 None:intergenic 20.0%
!!! ATTTTAAGTATTGTCTGTTT+TGG - chr7.1:4311211-4311230 MS.gene072605:CDS 20.0%
!!! CAATTTTTTTGTTAACTTGT+AGG - chr7.1:4309632-4309651 MS.gene072605:intron 20.0%
!!! CTTTTATCTGAAAATTGTAT+TGG + chr7.1:4311350-4311369 None:intergenic 20.0%
!!! GGATATATTTTAGTTTGTTT+TGG - chr7.1:4310063-4310082 MS.gene072605:intron 20.0%
!!! TAGTTTGTTTTGGTAAAATT+TGG - chr7.1:4310073-4310092 MS.gene072605:intron 20.0%
!!! TTTGAGACTAAAAAATATGT+AGG - chr7.1:4311276-4311295 MS.gene072605:CDS 20.0%
!!! TTTTAAGTATTGTCTGTTTT+GGG - chr7.1:4311212-4311231 MS.gene072605:CDS 20.0%
!!! TTTTTGACTTGATATTTCTT+AGG - chr7.1:4310454-4310473 MS.gene072605:CDS 20.0%
! AAAATGGGTGAAATTCATTA+CGG + chr7.1:4309055-4309074 None:intergenic 25.0%
! AAGATCTTACACTAATAATG+GGG - chr7.1:4310378-4310397 MS.gene072605:CDS 25.0%
! AAGTTTGAGGATTTAGATAA+CGG - chr7.1:4308574-4308593 MS.gene072605:intron 25.0%
! AATGAAACAAATACAAGGAT+AGG - chr7.1:4308550-4308569 MS.gene072605:intron 25.0%
! ACAAGTTATGCTTAAAAACA+AGG - chr7.1:4311056-4311075 MS.gene072605:CDS 25.0%
! ACACAATTTCTAACACTAAT+GGG + chr7.1:4308316-4308335 None:intergenic 25.0%
! ATGCTAATGAAACAAATACA+AGG - chr7.1:4308545-4308564 MS.gene072605:intron 25.0%
! CAAGTTATGCTTAAAAACAA+GGG - chr7.1:4311057-4311076 MS.gene072605:CDS 25.0%
! CACAAGATAATTCAAGAAAT+AGG + chr7.1:4309579-4309598 None:intergenic 25.0%
! GATTGAAGGAAAATTGTAAA+AGG + chr7.1:4310560-4310579 None:intergenic 25.0%
! TACACAATTTCTAACACTAA+TGG + chr7.1:4308317-4308336 None:intergenic 25.0%
! TACATTATCAGTTAACCATA+TGG + chr7.1:4310350-4310369 None:intergenic 25.0%
! TCAATTAGATTTAGAGAATC+AGG - chr7.1:4308949-4308968 MS.gene072605:CDS 25.0%
! TGTGAAATATCAAAATTCGA+AGG + chr7.1:4310582-4310601 None:intergenic 25.0%
! TTAGGTGAGAATAATACAAA+AGG - chr7.1:4308973-4308992 MS.gene072605:CDS 25.0%
!! AAATTTGAAGCGAAAAAATC+TGG - chr7.1:4309500-4309519 MS.gene072605:intron 25.0%
!! TCATCAAAAGTTGATTTAAG+TGG - chr7.1:4309195-4309214 MS.gene072605:intron 25.0%
!! TTTCATTTCCTAGATTTTTC+TGG - chr7.1:4311463-4311482 MS.gene072605:intron 25.0%
!!! AATTGAAGATTTTGATACCT+CGG - chr7.1:4308858-4308877 MS.gene072605:CDS 25.0%
!!! GATTTTGAAGATGAATCAAT+TGG - chr7.1:4309654-4309673 MS.gene072605:intron 25.0%
AAAGCTAATCTTCAGAACAT+TGG - chr7.1:4309096-4309115 MS.gene072605:CDS 30.0%
AACAAATCAAATGTCTATCC+AGG - chr7.1:4311089-4311108 MS.gene072605:CDS 30.0%
AACTCAAACAAATCGTTTCT+GGG + chr7.1:4308415-4308434 None:intergenic 30.0%
AAGGGTCATGATAAATATTC+AGG - chr7.1:4308517-4308536 MS.gene072605:intron 30.0%
AGATTTAGAGAATCAGGTTT+AGG - chr7.1:4308955-4308974 MS.gene072605:CDS 30.0%
ATCAAAATTCGAAGGATTGA+AGG + chr7.1:4310574-4310593 None:intergenic 30.0%
ATGACTTACCAGAAAAATCT+AGG + chr7.1:4311474-4311493 None:intergenic 30.0%
ATTGGAAGTTTGATCAACTT+TGG + chr7.1:4309355-4309374 None:intergenic 30.0%
CATATGCACAAAAACAGAAA+AGG + chr7.1:4311151-4311170 None:intergenic 30.0%
GAAAAAACATCGCGTTATAA+TGG + chr7.1:4310616-4310635 None:intergenic 30.0%
GAACCTGAAGAAAGAAAAAA+AGG + chr7.1:4309971-4309990 None:intergenic 30.0%
TAAGAAAACATTGAAGCACA+TGG + chr7.1:4310910-4310929 None:intergenic 30.0%
TTTACGCAGATTATGACAAT+GGG - chr7.1:4310643-4310662 MS.gene072605:CDS 30.0%
TTTAGTGACTCTCATAAACA+AGG - chr7.1:4308808-4308827 MS.gene072605:CDS 30.0%
! AATATTCTTTTCTCGAGAGT+TGG - chr7.1:4310322-4310341 MS.gene072605:CDS 30.0%
! ATTGGATCCTTTAACTTAGA+GGG + chr7.1:4311021-4311040 None:intergenic 30.0%
! CTTGGAATTTAAGATTTGAC+CGG - chr7.1:4310042-4310061 MS.gene072605:intron 30.0%
! GTGTTTTTCTCAAGAGATTT+CGG + chr7.1:4309297-4309316 None:intergenic 30.0%
! TTGACTTGATATTTCTTAGG+CGG - chr7.1:4310457-4310476 MS.gene072605:CDS 30.0%
! TTTTACGCAGATTATGACAA+TGG - chr7.1:4310642-4310661 MS.gene072605:CDS 30.0%
!! ATAGAATGTTGATTCTCACT+TGG - chr7.1:4310024-4310043 MS.gene072605:intron 30.0%
!! ATTGAAGATTTTGATACCTC+GGG - chr7.1:4308859-4308878 MS.gene072605:CDS 30.0%
!! CAACTTTTTCTTTAGACATG+TGG + chr7.1:4308232-4308251 None:intergenic 30.0%
!! CTTTTCTTAAAAGGCACAAA+TGG + chr7.1:4309785-4309804 None:intergenic 30.0%
!!! TGACCTTTTTTTCTTTCTTC+AGG - chr7.1:4309965-4309984 MS.gene072605:intron 30.0%
AAGTGCACAATCTATCTGAA+AGG - chr7.1:4309736-4309755 MS.gene072605:intron 35.0%
ACTTAAAATAAACGGTTCCG+CGG + chr7.1:4311200-4311219 None:intergenic 35.0%
ACTTACACAGATGATTGATC+TGG + chr7.1:4308284-4308303 None:intergenic 35.0%
AGACCAAATCCTCAATTGTT+TGG - chr7.1:4310850-4310869 MS.gene072605:CDS 35.0%
AGAGAAAGAATACTTGCAGT+TGG + chr7.1:4310535-4310554 None:intergenic 35.0%
AGTCCATCTCATACTCTTAA+GGG - chr7.1:4308499-4308518 MS.gene072605:intron 35.0%
AGTGCACAATCTATCTGAAA+GGG - chr7.1:4309737-4309756 MS.gene072605:intron 35.0%
ATTATGACAATGGGAAGTCA+TGG - chr7.1:4310652-4310671 MS.gene072605:CDS 35.0%
ATTGACCATGCACTAAAATC+TGG + chr7.1:4308453-4308472 None:intergenic 35.0%
CAAACTTCCAATCAAGTTCT+TGG - chr7.1:4309363-4309382 MS.gene072605:intron 35.0%
CAACTCAAACAAATCGTTTC+TGG + chr7.1:4308416-4308435 None:intergenic 35.0%
CACTATTTACATCGTAGTTC+TGG - chr7.1:4308691-4308710 MS.gene072605:intron 35.0%
CATAAGACTTTGTCAGAACA+AGG + chr7.1:4311318-4311337 None:intergenic 35.0%
CTTACACAGATGATTGATCT+GGG + chr7.1:4308283-4308302 None:intergenic 35.0%
CTTGAATTATCTTGTGAGTG+TGG - chr7.1:4309583-4309602 MS.gene072605:intron 35.0%
GACCAAATCCTCAATTGTTT+GGG - chr7.1:4310851-4310870 MS.gene072605:CDS 35.0%
GAGAAATCTAGCATAGAAAC+AGG + chr7.1:4310417-4310436 None:intergenic 35.0%
GCTGTAGAATTAAATGCTAG+TGG - chr7.1:4310958-4310977 MS.gene072605:CDS 35.0%
GGTGTTAAAAGAACTGATCA+TGG - chr7.1:4309675-4309694 MS.gene072605:intron 35.0%
GGTTTCTTACATGAACTATC+TGG - chr7.1:4308712-4308731 MS.gene072605:intron 35.0%
TACAAGGATAGGAAAGTTTG+AGG - chr7.1:4308561-4308580 MS.gene072605:intron 35.0%
TGGACTTGAACAATCAAAAG+TGG - chr7.1:4311549-4311568 MS.gene072605:intron 35.0%
TGTGAGTTCACATTTGACAT+TGG + chr7.1:4311039-4311058 None:intergenic 35.0%
TTAAATGCTAGTGGAACAGA+AGG - chr7.1:4310967-4310986 MS.gene072605:CDS 35.0%
TTACACAGATGATTGATCTG+GGG + chr7.1:4308282-4308301 None:intergenic 35.0%
TTCAGATAGATTGTGCACTT+CGG + chr7.1:4309736-4309755 None:intergenic 35.0%
! AAACAAGGTATCCTTTCCAA+GGG - chr7.1:4308823-4308842 MS.gene072605:CDS 35.0%
! CAATGTATGGCTGAACTTTT+TGG + chr7.1:4309228-4309247 None:intergenic 35.0%
! CAGAAACGATTTGTTTGAGT+TGG - chr7.1:4308414-4308433 MS.gene072605:intron 35.0%
! CATTGGATCCTTTAACTTAG+AGG + chr7.1:4311022-4311041 None:intergenic 35.0%
! GCTTCAATGTTTTCTTATCC+CGG - chr7.1:4310913-4310932 MS.gene072605:CDS 35.0%
! TAAACAAGGTATCCTTTCCA+AGG - chr7.1:4308822-4308841 MS.gene072605:CDS 35.0%
! TCATCTTGACTTGAAGAAAC+AGG + chr7.1:4308622-4308641 None:intergenic 35.0%
! TCTGACAAAGTCTTATGACA+GGG - chr7.1:4311321-4311340 MS.gene072605:CDS 35.0%
! TTCTGACAAAGTCTTATGAC+AGG - chr7.1:4311320-4311339 MS.gene072605:CDS 35.0%
!! AATGACCAGATTTTAGTGCA+TGG - chr7.1:4308445-4308464 MS.gene072605:intron 35.0%
!! ACGATTTGTTTGAGTTGGTT+TGG - chr7.1:4308419-4308438 MS.gene072605:intron 35.0%
!! GCTATTTCTGTTGTGTGAAT+GGG + chr7.1:4310198-4310217 None:intergenic 35.0%
!! TCAACTTTTGATGATTCGCA+AGG + chr7.1:4309189-4309208 None:intergenic 35.0%
!! TGCTATTTCTGTTGTGTGAA+TGG + chr7.1:4310199-4310218 None:intergenic 35.0%
!!! AAGCTCAAGTTTTGTTTGGA+TGG - chr7.1:4310138-4310157 MS.gene072605:CDS 35.0%
!!! ACTGAAGCTCAAGTTTTGTT+TGG - chr7.1:4310134-4310153 MS.gene072605:CDS 35.0%
AAAAGAACTGATCATGGACG+AGG - chr7.1:4309681-4309700 MS.gene072605:intron 40.0%
AACAAAGATGCAGCTGTGAT+AGG - chr7.1:4309156-4309175 MS.gene072605:CDS 40.0%
AACATTGAAGCACATGGCAT+TGG + chr7.1:4310904-4310923 None:intergenic 40.0%
AATTGCAAGTGAAGAACCCT+TGG + chr7.1:4308842-4308861 None:intergenic 40.0%
ACAGCTGATGAGTTCATAAC+AGG + chr7.1:4310943-4310962 None:intergenic 40.0%
ACTAATGGAAACCGTGGAAT+CGG - chr7.1:4310990-4311009 MS.gene072605:CDS 40.0%
ACTCATACCGAATTGCAACA+AGG - chr7.1:4309941-4309960 MS.gene072605:intron 40.0%
ACTCTCACCAAGAACTTGAT+TGG + chr7.1:4309373-4309392 None:intergenic 40.0%
AGCCCAAACAATTGAGGATT+TGG + chr7.1:4310856-4310875 None:intergenic 40.0%
AGGTCAACCTTGTTGCAATT+CGG + chr7.1:4309951-4309970 None:intergenic 40.0%
AGGTGAGTTCCTTGAAATTG+AGG + chr7.1:4310784-4310803 None:intergenic 40.0%
ATTTGCATGGCAACACTCAT+GGG + chr7.1:4310748-4310767 None:intergenic 40.0%
CAAAGGTTTCAAATCAACCC+TGG + chr7.1:4309271-4309290 None:intergenic 40.0%
CATACATTGTCATCAGTCAG+TGG - chr7.1:4309239-4309258 MS.gene072605:intron 40.0%
CGACGGCATATTTAACTGAT+TGG + chr7.1:4308899-4308918 None:intergenic 40.0%
GAGTCCATCTCATACTCTTA+AGG - chr7.1:4308498-4308517 MS.gene072605:intron 40.0%
GATACATCTTCTTTGCAAGC+AGG + chr7.1:4309333-4309352 None:intergenic 40.0%
GCGAAAAAATCTGGACTATG+AGG - chr7.1:4309509-4309528 MS.gene072605:intron 40.0%
GGTGAAATTCATTACGGTTG+AGG + chr7.1:4309049-4309068 None:intergenic 40.0%
TAAAGCTTCAATGCTGGATG+AGG - chr7.1:4310481-4310500 MS.gene072605:CDS 40.0%
TAGTGGAACAGAAGGACTAA+TGG - chr7.1:4310975-4310994 MS.gene072605:CDS 40.0%
TCATTACGGTTGAGGAAGAT+GGG + chr7.1:4309041-4309060 None:intergenic 40.0%
TCCATTGCACAATTCAACCA+AGG + chr7.1:4308664-4308683 None:intergenic 40.0%
TCTCAAGAAGCAAACAAACC+TGG + chr7.1:4311110-4311129 None:intergenic 40.0%
TGACATTGATGCAACAACGA+CGG + chr7.1:4308916-4308935 None:intergenic 40.0%
TTCATTACGGTTGAGGAAGA+TGG + chr7.1:4309042-4309061 None:intergenic 40.0%
TTTCTTCACAATGTGCATGC+TGG + chr7.1:4309008-4309027 None:intergenic 40.0%
! ATGAGTGTTGCCATGCAAAT+GGG - chr7.1:4310748-4310767 MS.gene072605:CDS 40.0%
! CACTGACTGATGACAATGTA+TGG + chr7.1:4309241-4309260 None:intergenic 40.0%
! TGACCCTTAAGAGTATGAGA+TGG + chr7.1:4308505-4308524 None:intergenic 40.0%
!! AAGTATTGTCTGTTTTGGGC+AGG - chr7.1:4311216-4311235 MS.gene072605:CDS 40.0%
!! AGTATTGTCTGTTTTGGGCA+GGG - chr7.1:4311217-4311236 MS.gene072605:CDS 40.0%
!! ATTTGATGACGATGATGCCT+TGG - chr7.1:4308644-4308663 MS.gene072605:intron 40.0%
!! CAGGGTTGATTTGAAACCTT+TGG - chr7.1:4309269-4309288 MS.gene072605:intron 40.0%
!! GTCATTTTCCAGCAAAGCAT+GGG + chr7.1:4311587-4311606 None:intergenic 40.0%
!!! TGGACTCGTTTTAGCTCTAT+TGG + chr7.1:4308485-4308504 None:intergenic 40.0%
!!! TGTCATTTTCCAGCAAAGCA+TGG + chr7.1:4311588-4311607 None:intergenic 40.0%
AGAAGGACTAATGGAAACCG+TGG - chr7.1:4310984-4311003 MS.gene072605:CDS 45.0%
AGTCCAGATGTATGTGCAAC+AGG + chr7.1:4310808-4310827 None:intergenic 45.0%
CAAGTGAAGAACCCTTGGAA+AGG + chr7.1:4308837-4308856 None:intergenic 45.0%
CAATTGTTTGGGCTTCAAGC+TGG - chr7.1:4310862-4310881 MS.gene072605:CDS 45.0%
CAGATGTATGTGCAACAGGA+AGG + chr7.1:4310804-4310823 None:intergenic 45.0%
CATTTGCATGGCAACACTCA+TGG + chr7.1:4310749-4310768 None:intergenic 45.0%
CTTCCTGTTGCACATACATC+TGG - chr7.1:4310802-4310821 MS.gene072605:CDS 45.0%
GAAGAGACAGGATCAATGAG+AGG - chr7.1:4309901-4309920 MS.gene072605:CDS 45.0%
GCAACACTCATGGGTGAAAA+GGG + chr7.1:4310739-4310758 None:intergenic 45.0%
GCCTTGGTTGAATTGTGCAA+TGG - chr7.1:4308660-4308679 MS.gene072605:intron 45.0%
GCTTGAAGCCCAAACAATTG+AGG + chr7.1:4310862-4310881 None:intergenic 45.0%
GGCAGCAAAGTCATTTGTAG+TGG + chr7.1:4308740-4308759 None:intergenic 45.0%
GGCTTCACCCTCTAAGTTAA+AGG - chr7.1:4311011-4311030 MS.gene072605:CDS 45.0%
GGTCTGCATTGAATCACACA+AGG + chr7.1:4308394-4308413 None:intergenic 45.0%
GGTTTCAAATCAACCCTGGA+TGG + chr7.1:4309267-4309286 None:intergenic 45.0%
TAGTGTGAAGCAACAACTGG+TGG - chr7.1:4311529-4311548 MS.gene072605:intron 45.0%
TATATCTGACCTCAAGTCCG+CGG - chr7.1:4311180-4311199 MS.gene072605:CDS 45.0%
TCAAGAGATTTCGGCTCCAA+AGG + chr7.1:4309288-4309307 None:intergenic 45.0%
TCATCAAGACCAGAACGTGT+GGG - chr7.1:4309126-4309145 MS.gene072605:CDS 45.0%
TCCTCTGTTTGCTCTGACAA+TGG - chr7.1:4309447-4309466 MS.gene072605:intron 45.0%
TGAGTTCATAACAGGCTCTC+CGG + chr7.1:4310935-4310954 None:intergenic 45.0%
TGGACTATGAGGATTCTGAG+TGG - chr7.1:4309520-4309539 MS.gene072605:intron 45.0%
TTCATCAAGACCAGAACGTG+TGG - chr7.1:4309125-4309144 MS.gene072605:CDS 45.0%
! AGCCGCAGGTTTTGCAAAAT+GGG + chr7.1:4309070-4309089 None:intergenic 45.0%
! ATTCCTGCTGGTAACGTCAT+AGG + chr7.1:4310688-4310707 None:intergenic 45.0%
! CACCCATTTTGCAAAACCTG+CGG - chr7.1:4309065-4309084 MS.gene072605:CDS 45.0%
! CATGAGTGTTGCCATGCAAA+TGG - chr7.1:4310747-4310766 MS.gene072605:CDS 45.0%
! TAGCCGCAGGTTTTGCAAAA+TGG + chr7.1:4309071-4309090 None:intergenic 45.0%
! TGAGTGTTGCCATGCAAATG+GGG - chr7.1:4310749-4310768 MS.gene072605:CDS 45.0%
! TGGTAGTGTGAAGCAACAAC+TGG - chr7.1:4311526-4311545 MS.gene072605:intron 45.0%
! TTAGCTTTCACAATAGCCGC+AGG + chr7.1:4309084-4309103 None:intergenic 45.0%
!! ACTTGCTGCTTTACATGGGA+TGG - chr7.1:4310825-4310844 MS.gene072605:CDS 45.0%
!! CTGGACTTGCTGCTTTACAT+GGG - chr7.1:4310821-4310840 MS.gene072605:CDS 45.0%
!! GTATTGTCTGTTTTGGGCAG+GGG - chr7.1:4311218-4311237 MS.gene072605:CDS 45.0%
!! TCTGGACTTGCTGCTTTACA+TGG - chr7.1:4310820-4310839 MS.gene072605:CDS 45.0%
AGGAATGCAGCACATGCATG+CGG - chr7.1:4310702-4310721 MS.gene072605:CDS 50.0%
ATGCCTATGACGTTACCAGC+AGG - chr7.1:4310682-4310701 MS.gene072605:CDS 50.0%
CTTGGTGAGAGTCGCAGAAA+AGG - chr7.1:4309381-4309400 MS.gene072605:intron 50.0%
GAGTTCATAACAGGCTCTCC+GGG + chr7.1:4310934-4310953 None:intergenic 50.0%
GCCATTGTCAGAGCAAACAG+AGG + chr7.1:4309451-4309470 None:intergenic 50.0%
GGCAACACTCATGGGTGAAA+AGG + chr7.1:4310740-4310759 None:intergenic 50.0%
GGCGGATAAAGCTTCAATGC+TGG - chr7.1:4310475-4310494 MS.gene072605:CDS 50.0%
GTTGCCATGCAAATGGGGTT+GGG - chr7.1:4310754-4310773 MS.gene072605:CDS 50.0%
TCATGCAGAGACGAAGAGAC+AGG - chr7.1:4309889-4309908 MS.gene072605:CDS 50.0%
TCTCGAGAGTTGGCACCATA+TGG - chr7.1:4310332-4310351 MS.gene072605:CDS 50.0%
TGTTGCCATGCAAATGGGGT+TGG - chr7.1:4310753-4310772 MS.gene072605:CDS 50.0%
TTCTTTGCTCCCACACGTTC+TGG + chr7.1:4309138-4309157 None:intergenic 50.0%
TTGCCATGCAAATGGGGTTG+GGG - chr7.1:4310755-4310774 MS.gene072605:CDS 50.0%
TTTGGGCTTCAAGCTGGTCA+GGG - chr7.1:4310868-4310887 MS.gene072605:CDS 50.0%
! GATCATGGACGAGGCGTTAT+GGG - chr7.1:4309690-4309709 MS.gene072605:intron 50.0%
! TGATCATGGACGAGGCGTTA+TGG - chr7.1:4309689-4309708 MS.gene072605:intron 50.0%
!! TTGGGGGTGCCTCAATTTCA+AGG - chr7.1:4310772-4310791 MS.gene072605:CDS 50.0%
!!! GGTGCTAGTTTTTAGTCCCG+AGG + chr7.1:4308878-4308897 None:intergenic 50.0%
ATCAGTCAGTGGAGCCATCC+AGG - chr7.1:4309250-4309269 MS.gene072605:intron 55.0%
CGATAGTGCCCATGCTTTGC+TGG - chr7.1:4311576-4311595 MS.gene072605:CDS 55.0%
GTTTGGGCTTCAAGCTGGTC+AGG - chr7.1:4310867-4310886 MS.gene072605:CDS 55.0%
TAAACGGTTCCGCGGACTTG+AGG + chr7.1:4311192-4311211 None:intergenic 55.0%
TCAGTCAGTGGAGCCATCCA+GGG - chr7.1:4309251-4309270 MS.gene072605:intron 55.0%
TGCATGTGCTGCATTCCTGC+TGG + chr7.1:4310700-4310719 None:intergenic 55.0%
TGCCATGCAAATGGGGTTGG+GGG - chr7.1:4310756-4310775 MS.gene072605:CDS 55.0%
! AGAGGGTGAAGCCGATTCCA+CGG + chr7.1:4311004-4311023 None:intergenic 55.0%
CACCCCCAACCCCATTTGCA+TGG + chr7.1:4310761-4310780 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4308206 4311645 4308206 ID=MS.gene072605
chr7.1 mRNA 4308206 4311645 4308206 ID=MS.gene072605.t1;Parent=MS.gene072605
chr7.1 exon 4311554 4311645 4311554 ID=MS.gene072605.t1.exon1;Parent=MS.gene072605.t1
chr7.1 CDS 4311554 4311645 4311554 ID=cds.MS.gene072605.t1;Parent=MS.gene072605.t1
chr7.1 exon 4310300 4311440 4310300 ID=MS.gene072605.t1.exon2;Parent=MS.gene072605.t1
chr7.1 CDS 4310300 4311440 4310300 ID=cds.MS.gene072605.t1;Parent=MS.gene072605.t1
chr7.1 exon 4310093 4310197 4310093 ID=MS.gene072605.t1.exon3;Parent=MS.gene072605.t1
chr7.1 CDS 4310093 4310197 4310093 ID=cds.MS.gene072605.t1;Parent=MS.gene072605.t1
chr7.1 exon 4309889 4309954 4309889 ID=MS.gene072605.t1.exon4;Parent=MS.gene072605.t1
chr7.1 CDS 4309889 4309954 4309889 ID=cds.MS.gene072605.t1;Parent=MS.gene072605.t1
chr7.1 exon 4309310 4309375 4309310 ID=MS.gene072605.t1.exon5;Parent=MS.gene072605.t1
chr7.1 CDS 4309310 4309375 4309310 ID=cds.MS.gene072605.t1;Parent=MS.gene072605.t1
chr7.1 exon 4308741 4309199 4308741 ID=MS.gene072605.t1.exon6;Parent=MS.gene072605.t1
chr7.1 CDS 4308741 4309199 4308741 ID=cds.MS.gene072605.t1;Parent=MS.gene072605.t1
chr7.1 exon 4308206 4308319 4308206 ID=MS.gene072605.t1.exon7;Parent=MS.gene072605.t1
chr7.1 CDS 4308206 4308319 4308206 ID=cds.MS.gene072605.t1;Parent=MS.gene072605.t1
Gene Sequence

>MS.gene072605

ATGATATCTCTGCATGAGTTATGCCACATGTCTAAAGAAAAAGTTGATCATAAAGAGATGAACAATTCTTGTACCCCAGATCAATCATCTGTGTAAGTTCAATTACGCCCATTAGTGTTAGAAATTGTGTATGCATAATGTATTTGATTGATTGATTTATTTTGTTTAATTTCTAATAACACTGTCCTTGTGTGATTCAATGCAGACCCAGAAACGATTTGTTTGAGTTGGTTTGGCAAAATGACCAGATTTTAGTGCATGGTCAATCTAGTAATTCCAATAGAGCTAAAACGAGTCCATCTCATACTCTTAAGGGTCATGATAAATATTCAGGACAACATGCTAATGAAACAAATACAAGGATAGGAAAGTTTGAGGATTTAGATAACGGTTTGAATGAAATTATTACAAGGCCTGTTTCTTCAAGTCAAGATGAAGATTTGATGACGATGATGCCTTGGTTGAATTGTGCAATGGATGATGAACACTATTTACATCGTAGTTCTGGTTTCTTACATGAACTATCTGGTGCCACTACAAATGACTTTGCTGCCACAAATAAATTTTCTTTGCTTGATAGAAAAAGTAATTGTATTCAAGTATTTAGTGACTCTCATAAACAAGGTATCCTTTCCAAGGGTTCTTCACTTGCAATTGAAGATTTTGATACCTCGGGACTAAAAACTAGCACCAATCAGTTAAATATGCCGTCGTTGTTGCATCAATGTCAACCCTCATTTGAATCAATTAGATTTAGAGAATCAGGTTTAGGTGAGAATAATACAAAAGGTAATGCAAACCAGCATGCACATTGTGAAGAAATCTCTCATATCCCATCTTCCTCAACCGTAATGAATTTCACCCATTTTGCAAAACCTGCGGCTATTGTGAAAGCTAATCTTCAGAACATTGGTTTCTCTTCATCAAGACCAGAACGTGTGGGAGCAAAGAACAAAGATGCAGCTGTGATAGGAAGTAATCCTTGCGAATCATCAAAAGTTGATTTAAGTGGAGAATGTCCAAAAAGTTCAGCCATACATTGTCATCAGTCAGTGGAGCCATCCAGGGTTGATTTGAAACCTTTGGAGCCGAAATCTCTTGAGAAAAACACTAGTGTTTCTACTCCTGCTTGCAAAGAAGATGTATCCAAAGTTGATCAAACTTCCAATCAAGTTCTTGGTGAGAGTCGCAGAAAAGGTCAAGAATCTTTTAAAAAATCTACGGAGCTAACAGTAGTCTCTTCCTCTGTTTGCTCTGACAATGGCGCGTATAGAAGTTCAGATGATGCAAATCAAAATTTGAAGCGAAAAAATCTGGACTATGAGGATTCTGAGTGGCACAGTGAAGTAAATATCTTATAATTAAGTTGTCCTATTTCTTGAATTATCTTGTGAGTGTGGCTTATTTTATTGTGTTCTACTGTAAACAATTTTTTTGTTAACTTGTAGGATTTTGAAGATGAATCAATTGGTGTTAAAAGAACTGATCATGGACGAGGCGTTATGGGCTCAAAGAAAAATCGTTCAGCCGAAGTGCACAATCTATCTGAAAGGGTGAGTAAGAGTAAGATCATCTTCCATTTGTGCCTTTTAAGAAAAGTAGAAATAACAAAATTTTCATCTCAAGTGTATGTTTAGCAAATATTGCTTGTGATTTATGTGATTATAAATTTATGTGATTCACTCATGCAGAGACGAAGAGACAGGATCAATGAGAGGATGCGTGCATTGCAAGAACTCATACCGAATTGCAACAAGGTTGACCTTTTTTTCTTTCTTCAGGTTCTCTAAGTACATTTGAGAAACTTTATATATCAATATAGAATGTTGATTCTCACTTGGAATTTAAGATTTGACCGGATATATTTTAGTTTGTTTTGGTAAAATTTGGAATTTTTGTATCAAATCATATTGGAATTTGTGAATAATACTGAAGCTCAAGTTTTGTTTGGATGGTTTCAATCCTAAATTTGAATATGAAACATGATGTCCCATTCACACAACAGAAATAGCAGAAGTTCAATTCAAATTTCTTTAACATAAGCTATTAAAATGCTTGATATATATAGATATGAAATAGCCACATCATCTAACTAAAATATTTTTCACAAAGTTTTAATATTCTTTTCTCGAGAGTTGGCACCATATGGTTAACTGATAATGTAAAGAACTAAAGATCTTACACTAATAATGGGGATTAAAGTTAACTCCTGTTTCTATGCTAGATTTCTCATATATTTTTGTTTTTTTTTTTGACTTGATATTTCTTAGGCGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAATCACTTCAACTCCAACTGCAAGTATTCTTTCTCTTCCCTTTTACAATTTTCCTTCAATCCTTCGAATTTTGATATTTCACATTATATACTATCCATTATAACGCGATGTTTTTTCTGATCTTTTTACGCAGATTATGACAATGGGAAGTCATGGTTTATACATGCCTATGACGTTACCAGCAGGAATGCAGCACATGCATGCGGCTCACATGTTTCCCTTTTCACCCATGAGTGTTGCCATGCAAATGGGGTTGGGGGTGCCTCAATTTCAAGGAACTCACCTTCCTGTTGCACATACATCTGGACTTGCTGCTTTACATGGGATGGCAAGACCAAATCCTCAATTGTTTGGGCTTCAAGCTGGTCAGGGACTGCACATGCCAATGCCATGTGCTTCAATGTTTTCTTATCCCGGAGAGCCTGTTATGAACTCATCAGCTGTAGAATTAAATGCTAGTGGAACAGAAGGACTAATGGAAACCGTGGAATCGGCTTCACCCTCTAAGTTAAAGGATCCAATGTCAAATGTGAACTCACAAGTTATGCTTAAAAACAAGGGATGTAGCTCAACAAATCAAATGTCTATCCAGGTTTGTTTGCTTCTTGAGATTTAATACAAATGCATCTCCTTTTCTGTTTTTGTGCATATGTTTTTGTGCTATATCTGACCTCAAGTCCGCGGAACCGTTTATTTTAAGTATTGTCTGTTTTGGGCAGGGGTATTTAATAACACAAATTTAAAGGAACTTTTGATTTTTGAGACTAAAAAATATGTAGGAACTTTAACTAACATGCCTTGTTCTGACAAAGTCTTATGACAGGGAAGCCAATACAATTTTCAGATAAAAGTTGTAAACAAATGCACACATTATTACAATTTGTTTCCACTAAATTGTTCTTTTGAATTTGTCTTTTCATTTAGCCAAATATATCATTAAAACATTTCATTTCCTAGATTTTTCTGGTAAGTCATACACCTGTTGATGTTTTTGTTTTATTTTGTTATGGTAGTGTGAAGCAACAACTGGTGGACTTGAACAATCAAAAGTGGTACTCGATAGTGCCCATGCTTTGCTGGAAAATGACAAAAGAGACAACGTTGAGATTGATAAATCTCATGAGTAA
Protein sequence

>MS.gene072605.t1

MISLHELCHMSKEKVDHKEMNNSCTPDQSSVPRNDLFELVWQNDQILVHGQSSNSNRAKTSPSHTLKGHDKYSGQHANETNTRIGKFEDLDNGLNEIITRPVSSSQDEDLMTMMPWLNCAMDDEHYLHRSSGFLHELSGATTNDFAATNKFSLLDRKSNCIQVFSDSHKQGILSKGSSLAIEDFDTSGLKTSTNQLNMPSLLHQCQPSFESIRFRESGLGENNTKGNANQHAHCEEISHIPSSSTVMNFTHFAKPAAIVKANLQNIGFSSSRPERVGAKNKDAAVIGSNPCESSKVDLSGECPKSSAIHCHQSVEPSRVDLKPLEPKSLEKNTSVSTPACKEDVSKVDQTSNQVLGESRRKGQESFKKSTELTVVSSSVCSDNGAYRSSDDANQNLKRKNLDYEDSEWHSEDFEDESIGVKRTDHGRGVMGSKKNRSAEVHNLSERRRRDRINERMRALQELIPNCNKADKASMLDEAIEYLKSLQLQLQIMTMGSHGLYMPMTLPAGMQHMHAAHMFPFSPMSVAMQMGLGVPQFQGTHLPVAHTSGLAALHGMARPNPQLFGLQAGQGLHMPMPCASMFSYPGEPVMNSSAVELNASGTEGLMETVESASPSKLKDPMSNVNSQVMLKNKGCSSTNQMSIQCEATTGGLEQSKVVLDSAHALLENDKRDNVEIDKSHE