Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07265.t1 | XP_003591431.1 | 100 | 108 | 0 | 0 | 29 | 136 | 29 | 136 | 9.20E-54 | 219.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07265.t1 | Q6NQH4 | 75.8 | 95 | 23 | 0 | 30 | 124 | 30 | 124 | 5.1e-37 | 155.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07265.t1 | B7FH99 | 100.0 | 108 | 0 | 0 | 29 | 136 | 29 | 136 | 6.7e-54 | 219.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07265 | MS.gene81197 | PPI |
| MS.gene07265 | MS.gene033520 | PPI |
| MS.gene024074 | MS.gene07265 | PPI |
| MS.gene07265 | MS.gene042025 | PPI |
| MS.gene07265 | MS.gene42910 | PPI |
| MS.gene07265 | MS.gene73008 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07265.t1 | MTR_1g087370 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 6.31e-100 | 282 |
| MS.gene07265.t1 | MTR_1g087370 | 95.876 | 97 | 4 | 0 | 1 | 97 | 1 | 97 | 3.03e-65 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07265.t1 | AT1G02680 | 69.091 | 110 | 30 | 1 | 15 | 124 | 19 | 124 | 1.31e-52 | 162 |
Find 29 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATAAGTGCCACACTTTC+AGG | 0.177767 | 1.4:-69629947 | None:intergenic |
| TCCTGAAAGTGTGGCACTTA+TGG | 0.274135 | 1.4:+69629946 | MS.gene07265:CDS |
| TTGTTTCAGCTCTTCATTCA+TGG | 0.321730 | 1.4:-69631923 | None:intergenic |
| GTACATAAAGCACAAGATAT+TGG | 0.348377 | 1.4:+69630091 | MS.gene07265:CDS |
| TCTGTACAACGGTTAAGTTT+TGG | 0.401058 | 1.4:-69631892 | None:intergenic |
| GAAAACTCCTCTTCTGCGCT+TGG | 0.409109 | 1.4:-69629678 | None:intergenic |
| TCAACCATTCATCCTTCTGC+TGG | 0.456641 | 1.4:-69632006 | None:intergenic |
| ATAGTGCAGCACATGATGTA+TGG | 0.483674 | 1.4:+69629790 | MS.gene07265:intron |
| TGTAGAATATATAACAGAAC+TGG | 0.487631 | 1.4:+69629979 | MS.gene07265:CDS |
| CAGCACATGATGTATGGCTT+CGG | 0.502212 | 1.4:+69629796 | MS.gene07265:CDS |
| CTGCGCTTGGATGAAGTATC+CGG | 0.543383 | 1.4:-69629665 | None:intergenic |
| GTACCTTGCGAATCAAATAG+AGG | 0.544458 | 1.4:-69630147 | None:intergenic |
| AGTGCCACACTTTCAGGAAG+TGG | 0.547849 | 1.4:-69629941 | None:intergenic |
| AGCAGCTTCCTCACAACCGC+CGG | 0.558420 | 1.4:+69629646 | MS.gene07265:CDS |
| ACAATGAGCAATTCTGCTGC+CGG | 0.562228 | 1.4:+69629605 | None:intergenic |
| ACTTCATCCAAGCGCAGAAG+AGG | 0.574154 | 1.4:+69629671 | MS.gene07265:CDS |
| ACAAGATATTGGATCACAGA+GGG | 0.592434 | 1.4:+69630102 | MS.gene07265:CDS |
| TGAAGTATCCGGCGGTTGTG+AGG | 0.595509 | 1.4:-69629654 | None:intergenic |
| GAGGTGGATGAACCAGCAGA+AGG | 0.597040 | 1.4:+69631994 | MS.gene07265:CDS |
| TTTCCTCTATTTGATTCGCA+AGG | 0.600469 | 1.4:+69630144 | MS.gene07265:CDS |
| TGATGAAGAAAATCTGAGGA+AGG | 0.607837 | 1.4:+69631966 | MS.gene07265:CDS |
| AACATGATGAAGAAAATCTG+AGG | 0.614216 | 1.4:+69631962 | MS.gene07265:CDS |
| CACAAGATATTGGATCACAG+AGG | 0.626166 | 1.4:+69630101 | MS.gene07265:CDS |
| ATGAAGAGCTGAAACAAGCA+AGG | 0.629320 | 1.4:+69631929 | MS.gene07265:CDS |
| TTAGCCACTTCCTGAAAGTG+TGG | 0.629862 | 1.4:+69629937 | MS.gene07265:intron |
| TGGACAACAGTTCTGTACAA+CGG | 0.671566 | 1.4:-69631903 | None:intergenic |
| AAGATATTGGATCACAGAGG+GGG | 0.677224 | 1.4:+69630104 | MS.gene07265:CDS |
| CGCTTGGATGAAGTATCCGG+CGG | 0.690618 | 1.4:-69629662 | None:intergenic |
| CAAGATATTGGATCACAGAG+GGG | 0.705641 | 1.4:+69630103 | MS.gene07265:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATATTTGCGTA+AGG | - | chr1.4:69630065-69630084 | None:intergenic | 15.0% |
| !! | ATGCTAAAATTTAAAAACTT+AGG | - | chr1.4:69629729-69629748 | None:intergenic | 15.0% |
| !! | CAATAAGTATAATATTCTTA+TGG | - | chr1.4:69630589-69630608 | None:intergenic | 15.0% |
| !! | TATATAATCTTAGTATCTTA+TGG | - | chr1.4:69631546-69631565 | None:intergenic | 15.0% |
| !!! | AATAGTTTAAAGTTAATAGT+TGG | + | chr1.4:69630897-69630916 | MS.gene07265:intron | 15.0% |
| !!! | ATAGTTTAAAGTTAATAGTT+GGG | + | chr1.4:69630898-69630917 | MS.gene07265:intron | 15.0% |
| !!! | CAAATATTTTTTTTTTGTCA+AGG | + | chr1.4:69630069-69630088 | MS.gene07265:intron | 15.0% |
| !! | AAAAATTCTTACATTCTCTT+TGG | - | chr1.4:69629703-69629722 | None:intergenic | 20.0% |
| !! | TAAAATATCAAGATTGATTG+TGG | - | chr1.4:69631833-69631852 | None:intergenic | 20.0% |
| !! | TAACTTTAAACTATTATTGC+AGG | - | chr1.4:69630892-69630911 | None:intergenic | 20.0% |
| !! | TATTCATTAGCAATGAATAT+GGG | + | chr1.4:69631216-69631235 | MS.gene07265:intron | 20.0% |
| !! | TTATTCATTAGCAATGAATA+TGG | + | chr1.4:69631215-69631234 | MS.gene07265:intron | 20.0% |
| !!! | ATTTCTCTTTTAATACATGT+TGG | - | chr1.4:69630316-69630335 | None:intergenic | 20.0% |
| !!! | ATTTTTATACGAGTCTTTAT+AGG | + | chr1.4:69630962-69630981 | MS.gene07265:intron | 20.0% |
| !!! | TTTCTCTTTTAATACATGTT+GGG | - | chr1.4:69630315-69630334 | None:intergenic | 20.0% |
| ! | AAAGTTGCAAATATAGATCT+TGG | + | chr1.4:69630183-69630202 | MS.gene07265:intron | 25.0% |
| ! | AACTTATCTACTCCTATTAA+AGG | + | chr1.4:69631762-69631781 | MS.gene07265:intron | 25.0% |
| ! | AAGTTGCAAATATAGATCTT+GGG | + | chr1.4:69630184-69630203 | MS.gene07265:intron | 25.0% |
| ! | ACTTATCTACTCCTATTAAA+GGG | + | chr1.4:69631763-69631782 | MS.gene07265:intron | 25.0% |
| ! | ATCTTAAATTTGATTGACCA+TGG | + | chr1.4:69631302-69631321 | MS.gene07265:intron | 25.0% |
| ! | CTTATCATTGATCAAACTTT+GGG | + | chr1.4:69631466-69631485 | MS.gene07265:intron | 25.0% |
| ! | GACTCGTATAAAAATTGAAT+TGG | - | chr1.4:69630957-69630976 | None:intergenic | 25.0% |
| ! | GATAGAATGAGAATTACATT+AGG | - | chr1.4:69629829-69629848 | None:intergenic | 25.0% |
| ! | GGGTAATAAAAAAATTCACA+TGG | - | chr1.4:69630291-69630310 | None:intergenic | 25.0% |
| ! | TAATATTCTTATGGTGTGTT+TGG | - | chr1.4:69630580-69630599 | None:intergenic | 25.0% |
| ! | TATTTATCTTCAAATACTGC+TGG | + | chr1.4:69630220-69630239 | MS.gene07265:intron | 25.0% |
| ! | TCTTATCATTGATCAAACTT+TGG | + | chr1.4:69631465-69631484 | MS.gene07265:intron | 25.0% |
| ! | TGAAGACCATATATTCATAA+AGG | - | chr1.4:69630682-69630701 | None:intergenic | 25.0% |
| ! | TGTAGAATATATAACAGAAC+TGG | + | chr1.4:69629979-69629998 | MS.gene07265:CDS | 25.0% |
| !! | AGAAATTTTGCAAACATAGT+AGG | - | chr1.4:69629864-69629883 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr1.4:69630849-69630868 | MS.gene07265:intron | 25.0% |
| !!! | AATGAAGGTTATTTTACTGT+TGG | + | chr1.4:69631701-69631720 | MS.gene07265:intron | 25.0% |
| AAATATTTGCGTAAGGACAA+AGG | - | chr1.4:69630058-69630077 | None:intergenic | 30.0% | |
| AACATGATGAAGAAAATCTG+AGG | + | chr1.4:69631962-69631981 | MS.gene07265:CDS | 30.0% | |
| AAGTTATATCTCAGAATTCC+TGG | - | chr1.4:69631652-69631671 | None:intergenic | 30.0% | |
| AGTTGCAAATATAGATCTTG+GGG | + | chr1.4:69630185-69630204 | MS.gene07265:intron | 30.0% | |
| ATATCAAGATTGATTGTGGT+CGG | - | chr1.4:69631829-69631848 | None:intergenic | 30.0% | |
| CTCAACAAAAATGTACAATC+AGG | - | chr1.4:69631380-69631399 | None:intergenic | 30.0% | |
| GTACATAAAGCACAAGATAT+TGG | + | chr1.4:69630091-69630110 | MS.gene07265:CDS | 30.0% | |
| TAATGTATCTGTCAAATCTG+AGG | + | chr1.4:69631126-69631145 | MS.gene07265:intron | 30.0% | |
| TTAAACTTGGATCCAAACAT+TGG | - | chr1.4:69630455-69630474 | None:intergenic | 30.0% | |
| TTAGCTAGAAATATCACTTC+TGG | + | chr1.4:69630652-69630671 | MS.gene07265:intron | 30.0% | |
| TTATGCTGTACATATATCTC+TGG | + | chr1.4:69631353-69631372 | MS.gene07265:intron | 30.0% | |
| ! | CAAATTTAAGATGAGGAAGT+TGG | - | chr1.4:69631294-69631313 | None:intergenic | 30.0% |
| ! | GGTCAATCAAATTTAAGATG+AGG | - | chr1.4:69631301-69631320 | None:intergenic | 30.0% |
| ! | TCTTTTAATACATGTTGGGA+GGG | - | chr1.4:69630311-69630330 | None:intergenic | 30.0% |
| AAGCTTCTATAAGCCAAAGT+CGG | + | chr1.4:69631023-69631042 | MS.gene07265:intron | 35.0% | |
| ACAAGATATTGGATCACAGA+GGG | + | chr1.4:69630102-69630121 | MS.gene07265:CDS | 35.0% | |
| ACAGCATAATTATGCATGAG+TGG | - | chr1.4:69631342-69631361 | None:intergenic | 35.0% | |
| ACTATAAAGCCTATGGAAGA+AGG | - | chr1.4:69631413-69631432 | None:intergenic | 35.0% | |
| AGAAACCAACGAAGAAGATT+AGG | - | chr1.4:69629770-69629789 | None:intergenic | 35.0% | |
| AGTTGTTAGCTGTTAGTTAC+TGG | + | chr1.4:69630922-69630941 | MS.gene07265:intron | 35.0% | |
| ATGCACATGCACTAAAATGA+AGG | + | chr1.4:69631686-69631705 | MS.gene07265:intron | 35.0% | |
| CCAAAGAGTTGAGTGATTTA+AGG | - | chr1.4:69631170-69631189 | None:intergenic | 35.0% | |
| CCTTAAATCACTCAACTCTT+TGG | + | chr1.4:69631167-69631186 | MS.gene07265:intron | 35.0% | |
| CGAGAATATGGACTTAAACT+TGG | - | chr1.4:69630468-69630487 | None:intergenic | 35.0% | |
| CTATAAAGCCTATGGAAGAA+GGG | - | chr1.4:69631412-69631431 | None:intergenic | 35.0% | |
| GCTGTTGTCATTATTCTCAA+GGG | + | chr1.4:69630263-69630282 | MS.gene07265:intron | 35.0% | |
| GGTCTGCCTTTATGAATATA+TGG | + | chr1.4:69630673-69630692 | MS.gene07265:intron | 35.0% | |
| GGTCTTCAATTGCTCATTAT+TGG | + | chr1.4:69630694-69630713 | MS.gene07265:intron | 35.0% | |
| GTACCATACAATTACCTTGT+TGG | - | chr1.4:69631194-69631213 | None:intergenic | 35.0% | |
| TAAGCCAAAGTCGGTATTAA+TGG | + | chr1.4:69631032-69631051 | MS.gene07265:intron | 35.0% | |
| TAGTCCTAAATAACCTGCAT+TGG | + | chr1.4:69631086-69631105 | MS.gene07265:intron | 35.0% | |
| TATAAAGCCTATGGAAGAAG+GGG | - | chr1.4:69631411-69631430 | None:intergenic | 35.0% | |
| TCCTAGAACTATAAAGCCTA+TGG | - | chr1.4:69631420-69631439 | None:intergenic | 35.0% | |
| TCTTCAAATACTGCTGGAAA+TGG | + | chr1.4:69630226-69630245 | MS.gene07265:intron | 35.0% | |
| TGAACCAATGCAGGTTATTT+AGG | - | chr1.4:69631093-69631112 | None:intergenic | 35.0% | |
| TGATGAAGAAAATCTGAGGA+AGG | + | chr1.4:69631966-69631985 | MS.gene07265:CDS | 35.0% | |
| TGCTGTTGTCATTATTCTCA+AGG | + | chr1.4:69630262-69630281 | MS.gene07265:intron | 35.0% | |
| TTAAATGCTACCTCCTGAAT+CGG | - | chr1.4:69631789-69631808 | None:intergenic | 35.0% | |
| TTGTTTCAGCTCTTCATTCA+TGG | - | chr1.4:69631926-69631945 | None:intergenic | 35.0% | |
| TTTGTAGCTTCATACAACCA+CGG | - | chr1.4:69630509-69630528 | None:intergenic | 35.0% | |
| ! | AAATCTGAGGAAGGTTTTTG+AGG | + | chr1.4:69631975-69631994 | MS.gene07265:CDS | 35.0% |
| ! | AATGCAGGTTATTTAGGACT+AGG | - | chr1.4:69631087-69631106 | None:intergenic | 35.0% |
| ! | CTCTTTTAATACATGTTGGG+AGG | - | chr1.4:69630312-69630331 | None:intergenic | 35.0% |
| ! | CTTTTGCGTATATTAGTGAC+CGG | - | chr1.4:69630740-69630759 | None:intergenic | 35.0% |
| ! | TATCTGTCAAATCTGAGGTT+AGG | + | chr1.4:69631131-69631150 | MS.gene07265:intron | 35.0% |
| ! | TATGGTGCATTTAGCTTCAT+TGG | - | chr1.4:69631528-69631547 | None:intergenic | 35.0% |
| ! | TCCATAGGCTTTATAGTTCT+AGG | + | chr1.4:69631416-69631435 | MS.gene07265:intron | 35.0% |
| ! | TCTGTACAACGGTTAAGTTT+TGG | - | chr1.4:69631895-69631914 | None:intergenic | 35.0% |
| ! | TTTCCTCTATTTGATTCGCA+AGG | + | chr1.4:69630144-69630163 | MS.gene07265:CDS | 35.0% |
| !! | ACCTGCATTGGTTCAATAAT+CGG | + | chr1.4:69631098-69631117 | MS.gene07265:intron | 35.0% |
| !! | AGAACCATTAATACCGACTT+TGG | - | chr1.4:69631039-69631058 | None:intergenic | 35.0% |
| !!! | TCTTTGTTTTGATGAGGTTC+CGG | - | chr1.4:69629627-69629646 | None:intergenic | 35.0% |
| !!! | TTAGTTTTCTGGTTCCACAA+AGG | + | chr1.4:69631588-69631607 | MS.gene07265:intron | 35.0% |
| AAGATATTGGATCACAGAGG+GGG | + | chr1.4:69630104-69630123 | MS.gene07265:CDS | 40.0% | |
| AAGTCCATATTCTCGCTTCT+CGG | + | chr1.4:69630473-69630492 | MS.gene07265:intron | 40.0% | |
| ACAAAGGCTCAAACACACTT+AGG | + | chr1.4:69631604-69631623 | MS.gene07265:intron | 40.0% | |
| ACCGATTATTGAACCAATGC+AGG | - | chr1.4:69631102-69631121 | None:intergenic | 40.0% | |
| ACTGTTAGCACTCTAATAGC+TGG | + | chr1.4:69631240-69631259 | MS.gene07265:intron | 40.0% | |
| ATAGTGCAGCACATGATGTA+TGG | + | chr1.4:69629790-69629809 | MS.gene07265:intron | 40.0% | |
| ATGAAGAGCTGAAACAAGCA+AGG | + | chr1.4:69631929-69631948 | MS.gene07265:CDS | 40.0% | |
| ATTATGCATGAGTGGTCCAA+AGG | - | chr1.4:69631334-69631353 | None:intergenic | 40.0% | |
| CAAGATATTGGATCACAGAG+GGG | + | chr1.4:69630103-69630122 | MS.gene07265:CDS | 40.0% | |
| CACAAGATATTGGATCACAG+AGG | + | chr1.4:69630101-69630120 | MS.gene07265:CDS | 40.0% | |
| CAGAGAACTCTTTCTCAAGT+AGG | + | chr1.4:69630992-69631011 | MS.gene07265:intron | 40.0% | |
| CTGTACACTAAGCCAATGTT+TGG | + | chr1.4:69630440-69630459 | MS.gene07265:intron | 40.0% | |
| GCTTAAACCTTTCCTACACT+TGG | + | chr1.4:69631626-69631645 | MS.gene07265:intron | 40.0% | |
| GCTTCTATGCAAAAGTGAGT+TGG | + | chr1.4:69630534-69630553 | MS.gene07265:intron | 40.0% | |
| GGACCAACAAGGTAATTGTA+TGG | + | chr1.4:69631188-69631207 | MS.gene07265:intron | 40.0% | |
| GTACCTTGCGAATCAAATAG+AGG | - | chr1.4:69630150-69630169 | None:intergenic | 40.0% | |
| GTCTTCCTAATCTTCTTCGT+TGG | + | chr1.4:69629762-69629781 | MS.gene07265:intron | 40.0% | |
| GTTGAGTGAACTTTGTCTTG+AGG | + | chr1.4:69631488-69631507 | MS.gene07265:intron | 40.0% | |
| TAAGTGTGTTTGAGCCTTTG+TGG | - | chr1.4:69631605-69631624 | None:intergenic | 40.0% | |
| TAATTGTTCAACGAGTGCCA+TGG | + | chr1.4:69630023-69630042 | MS.gene07265:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr1.4:69630853-69630872 | MS.gene07265:intron | 40.0% | |
| TGGACAACAGTTCTGTACAA+CGG | - | chr1.4:69631906-69631925 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr1.4:69630852-69630871 | MS.gene07265:intron | 40.0% | |
| ! | CTTTGGCTTATAGAAGCTTG+TGG | - | chr1.4:69631022-69631041 | None:intergenic | 40.0% |
| ! | GTGAGTTGGAAACGTGAAAA+TGG | + | chr1.4:69630548-69630567 | MS.gene07265:intron | 40.0% |
| !!! | AGCTGCTCTTTGTTTTGATG+AGG | - | chr1.4:69629633-69629652 | None:intergenic | 40.0% |
| AATAAGCATGCTACACCCTC+CGG | + | chr1.4:69630718-69630737 | MS.gene07265:intron | 45.0% | |
| CAGCACATGATGTATGGCTT+CGG | + | chr1.4:69629796-69629815 | MS.gene07265:CDS | 45.0% | |
| CAGGAAGTGGCTAATTCAAG+TGG | - | chr1.4:69629931-69629950 | None:intergenic | 45.0% | |
| CCAGAAAACTAACCTCTGCA+AGG | - | chr1.4:69631580-69631599 | None:intergenic | 45.0% | |
| CTCAACTCTTTGGACCAACA+AGG | + | chr1.4:69631177-69631196 | MS.gene07265:intron | 45.0% | |
| GAAAACTAACCTCTGCAAGG+AGG | - | chr1.4:69631577-69631596 | None:intergenic | 45.0% | |
| TAAAGCTTCTTGCGTACTGC+AGG | + | chr1.4:69631864-69631883 | MS.gene07265:intron | 45.0% | |
| TACACCGAGAAGCGAGAATA+TGG | - | chr1.4:69630480-69630499 | None:intergenic | 45.0% | |
| TCCATAAGTGCCACACTTTC+AGG | - | chr1.4:69629950-69629969 | None:intergenic | 45.0% | |
| TCCTGAATCGGCCCTTTAAT+AGG | - | chr1.4:69631777-69631796 | None:intergenic | 45.0% | |
| TGCGTATATTAGTGACCGGA+GGG | - | chr1.4:69630736-69630755 | None:intergenic | 45.0% | |
| TTAGCCACTTCCTGAAAGTG+TGG | + | chr1.4:69629937-69629956 | MS.gene07265:intron | 45.0% | |
| TTGCGTATATTAGTGACCGG+AGG | - | chr1.4:69630737-69630756 | None:intergenic | 45.0% | |
| ! | TATTAAAGGGCCGATTCAGG+AGG | + | chr1.4:69631776-69631795 | MS.gene07265:intron | 45.0% |
| ! | TCCTATTAAAGGGCCGATTC+AGG | + | chr1.4:69631773-69631792 | MS.gene07265:intron | 45.0% |
| ! | TCCTGAAAGTGTGGCACTTA+TGG | + | chr1.4:69629946-69629965 | MS.gene07265:CDS | 45.0% |
| ! | TCTCGCTTCTCGGTGTAAAA+TGG | + | chr1.4:69630483-69630502 | MS.gene07265:intron | 45.0% |
| !! | TCTGAGGAAGGTTTTTGAGG+TGG | + | chr1.4:69631978-69631997 | MS.gene07265:CDS | 45.0% |
| !!! | CCTTGCAGAGGTTAGTTTTC+TGG | + | chr1.4:69631577-69631596 | MS.gene07265:intron | 45.0% |
| AAAGCCTATGGAAGAAGGGG+AGG | - | chr1.4:69631408-69631427 | None:intergenic | 50.0% | |
| AACCTTTCCTACACTTGGCC+AGG | + | chr1.4:69631631-69631650 | MS.gene07265:intron | 50.0% | |
| AACGAGTGCCATGGAGTCAT+TGG | + | chr1.4:69630032-69630051 | MS.gene07265:intron | 50.0% | |
| AAGCCTATGGAAGAAGGGGA+GGG | - | chr1.4:69631407-69631426 | None:intergenic | 50.0% | |
| ACTTCATCCAAGCGCAGAAG+AGG | + | chr1.4:69629671-69629690 | MS.gene07265:CDS | 50.0% | |
| AGTGCCACACTTTCAGGAAG+TGG | - | chr1.4:69629944-69629963 | None:intergenic | 50.0% | |
| CAGAATTCCTGGCCAAGTGT+AGG | - | chr1.4:69631641-69631660 | None:intergenic | 50.0% | |
| GAAAACTCCTCTTCTGCGCT+TGG | - | chr1.4:69629681-69629700 | None:intergenic | 50.0% | |
| GACAAAGGCCAATGACTCCA+TGG | - | chr1.4:69630043-69630062 | None:intergenic | 50.0% | |
| TTCCTGGCCAAGTGTAGGAA+AGG | - | chr1.4:69631636-69631655 | None:intergenic | 50.0% | |
| ! | CTGCGCTTGGATGAAGTATC+CGG | - | chr1.4:69629668-69629687 | None:intergenic | 50.0% |
| ! | TTCTCGGTGTAAAATGGCCG+TGG | + | chr1.4:69630489-69630508 | MS.gene07265:intron | 50.0% |
| !! | TTGACCATGGTGCTGTCCTT+TGG | + | chr1.4:69631315-69631334 | MS.gene07265:intron | 50.0% |
| ATGTTGCAGCCTCCTTGCAG+AGG | + | chr1.4:69631565-69631584 | MS.gene07265:intron | 55.0% | |
| CTTCCCTCCCCTTCTTCCAT+AGG | + | chr1.4:69631401-69631420 | MS.gene07265:intron | 55.0% | |
| GAGGGGGAAGCTATCAGTTG+AGG | + | chr1.4:69630120-69630139 | MS.gene07265:CDS | 55.0% | |
| GAGGTGGATGAACCAGCAGA+AGG | + | chr1.4:69631994-69632013 | MS.gene07265:CDS | 55.0% | |
| TGGTCCAAAGGACAGCACCA+TGG | - | chr1.4:69631322-69631341 | None:intergenic | 55.0% | |
| ! | CGCTTGGATGAAGTATCCGG+CGG | - | chr1.4:69629665-69629684 | None:intergenic | 55.0% |
| ! | TGAAGTATCCGGCGGTTGTG+AGG | - | chr1.4:69629657-69629676 | None:intergenic | 55.0% |
| AGCAGCTTCCTCACAACCGC+CGG | + | chr1.4:69629646-69629665 | MS.gene07265:CDS | 60.0% | |
| GGCCACTGACATACACCCTC+CGG | - | chr1.4:69630871-69630890 | None:intergenic | 60.0% | |
| ! | GACCGGAGGGTGTATGTCAG+TGG | + | chr1.4:69630866-69630885 | MS.gene07265:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69629608 | 69632020 | 69629608 | ID=MS.gene07265 |
| chr1.4 | mRNA | 69629608 | 69632020 | 69629608 | ID=MS.gene07265.t1;Parent=MS.gene07265 |
| chr1.4 | exon | 69629608 | 69629710 | 69629608 | ID=MS.gene07265.t1.exon1;Parent=MS.gene07265.t1 |
| chr1.4 | CDS | 69629608 | 69629710 | 69629608 | ID=cds.MS.gene07265.t1;Parent=MS.gene07265.t1 |
| chr1.4 | exon | 69629794 | 69629831 | 69629794 | ID=MS.gene07265.t1.exon2;Parent=MS.gene07265.t1 |
| chr1.4 | CDS | 69629794 | 69629831 | 69629794 | ID=cds.MS.gene07265.t1;Parent=MS.gene07265.t1 |
| chr1.4 | exon | 69629941 | 69630000 | 69629941 | ID=MS.gene07265.t1.exon3;Parent=MS.gene07265.t1 |
| chr1.4 | CDS | 69629941 | 69630000 | 69629941 | ID=cds.MS.gene07265.t1;Parent=MS.gene07265.t1 |
| chr1.4 | exon | 69630091 | 69630165 | 69630091 | ID=MS.gene07265.t1.exon4;Parent=MS.gene07265.t1 |
| chr1.4 | CDS | 69630091 | 69630165 | 69630091 | ID=cds.MS.gene07265.t1;Parent=MS.gene07265.t1 |
| chr1.4 | exon | 69631886 | 69632020 | 69631886 | ID=MS.gene07265.t1.exon5;Parent=MS.gene07265.t1 |
| chr1.4 | CDS | 69631886 | 69632020 | 69631886 | ID=cds.MS.gene07265.t1;Parent=MS.gene07265.t1 |
| Gene Sequence |
| Protein sequence |
