AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072829

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072829.t1 MTR_5g010940 82.174 230 24 4 1 214 1 229 1.24e-132 372
MS.gene072829.t1 MTR_5g010910 81.739 230 20 4 1 214 1 224 3.61e-122 345
MS.gene072829.t1 MTR_5g010930 77.451 204 27 4 29 214 24 226 1.11e-106 306
MS.gene072829.t1 MTR_4g102660 53.738 214 71 6 23 214 13 220 3.51e-59 186
MS.gene072829.t1 MTR_1g101600 48.571 210 84 7 17 214 5 202 2.85e-53 170
MS.gene072829.t1 MTR_6g465420 49.505 202 83 5 13 206 17 207 1.24e-52 170
MS.gene072829.t1 MTR_6g465430 57.143 154 55 3 13 166 17 159 2.23e-52 169
MS.gene072829.t1 MTR_6g465450 50.485 206 74 8 14 206 18 208 6.22e-51 165
MS.gene072829.t1 MTR_6g466130 48.515 202 82 5 26 214 38 230 1.33e-50 164
MS.gene072829.t1 MTR_6g465460 58.273 139 51 2 28 166 28 159 1.97e-50 165
MS.gene072829.t1 MTR_6g466000 45.455 209 81 5 27 212 29 227 2.83e-50 163
MS.gene072829.t1 MTR_6g465690 45.701 221 99 7 1 206 1 215 2.65e-48 159
MS.gene072829.t1 MTR_6g465530 66.964 112 31 1 34 145 12 117 9.30e-48 155
MS.gene072829.t1 MTR_6g465510 69.444 108 27 1 38 145 16 117 1.98e-44 147
MS.gene072829.t1 MTR_6g466020 59.459 111 38 2 18 128 7 110 9.12e-38 129
MS.gene072829.t1 MTR_6g465850 62.500 120 38 2 26 145 35 147 1.86e-37 132
MS.gene072829.t1 MTR_2g085015 61.053 95 31 2 49 142 41 130 7.24e-31 113
MS.gene072829.t1 MTR_5g012910 50.000 126 56 2 51 175 24 143 1.07e-29 108
MS.gene072829.t1 MTR_3g110205 56.842 95 35 1 50 144 38 126 2.09e-27 103
MS.gene072829.t1 MTR_6g465990 37.681 207 76 6 29 212 17 193 1.55e-26 101
MS.gene072829.t1 MTR_8g006410 53.608 97 39 1 39 135 36 126 5.20e-26 100
MS.gene072829.t1 MTR_8g102800 53.043 115 43 3 33 144 14 120 1.18e-25 100
MS.gene072829.t1 MTR_7g046260 53.608 97 39 1 39 135 45 135 1.13e-24 97.4
MS.gene072829.t1 MTR_7g117690 54.651 86 33 1 50 135 23 102 2.20e-24 95.1
MS.gene072829.t1 MTR_6g088405 57.895 95 34 1 52 146 41 129 5.58e-24 95.1
MS.gene072829.t1 MTR_8g013860 52.525 99 41 1 51 149 43 135 1.08e-23 94.0
MS.gene072829.t1 MTR_2g101340 57.143 84 30 1 52 135 38 115 1.34e-23 94.0
MS.gene072829.t1 MTR_4g102670 40.936 171 78 6 51 212 11 167 2.57e-23 92.0
MS.gene072829.t1 MTR_8g027465 48.214 112 46 3 38 146 25 127 3.24e-21 87.0
MS.gene072829.t1 MTR_4g100650 63.235 68 19 1 53 120 72 133 7.72e-21 87.8
MS.gene072829.t1 MTR_6g088425 53.191 94 38 1 51 144 45 132 1.46e-17 78.6
MS.gene072829.t1 MTR_1g006660 68.182 66 15 1 51 116 43 102 3.11e-16 75.5
MS.gene072829.t1 MTR_4g035430 44.944 89 43 1 54 142 31 113 6.18e-16 73.9
MS.gene072829.t1 MTR_1g014780 32.075 159 90 4 54 212 37 177 9.98e-16 73.6
MS.gene072829.t1 MTR_5g008590 54.545 88 34 1 55 142 11 92 1.22e-15 72.4
MS.gene072829.t1 MTR_3g102100 37.500 120 61 4 24 141 16 123 8.01e-15 69.7
MS.gene072829.t1 MTR_5g008550 48.352 91 41 1 55 145 21 105 1.56e-14 69.7
MS.gene072829.t1 MTR_1g014800 32.911 158 78 4 14 164 2 138 1.89e-14 69.7
MS.gene072829.t1 MTR_5g008470 42.697 89 45 1 57 145 77 159 2.56e-14 68.6
MS.gene072829.t1 MTR_2g435590 39.216 102 54 2 20 119 59 154 8.40e-14 68.6
MS.gene072829.t1 MTR_1g014820 37.168 113 64 2 54 166 26 131 1.02e-13 68.6
MS.gene072829.t1 MTR_1g019110 53.125 64 24 1 55 118 44 101 1.12e-13 67.0
MS.gene072829.t1 MTR_1g090170 47.761 67 29 1 50 116 147 207 1.43e-13 68.6
MS.gene072829.t1 MTR_3g074130 44.828 87 39 3 31 116 127 205 1.68e-13 68.6
MS.gene072829.t1 MTR_5g083340 54.688 64 23 1 55 118 85 142 2.81e-13 68.2
MS.gene072829.t1 MTR_5g016750 43.750 96 36 3 55 142 25 110 3.24e-13 65.9
MS.gene072829.t1 MTR_1g090170 47.761 67 29 1 50 116 234 294 3.78e-13 67.8
MS.gene072829.t1 MTR_1g014860 48.485 66 28 1 54 119 21 80 5.05e-13 65.9
MS.gene072829.t1 MTR_2g105380 36.364 110 61 2 11 120 76 176 5.66e-13 67.0
MS.gene072829.t1 MTR_5g008790 53.030 66 23 2 55 118 18 77 6.71e-13 64.3
MS.gene072829.t1 MTR_2g090235 49.231 65 27 1 54 118 217 275 6.97e-13 67.0
MS.gene072829.t1 MTR_2g043050 40.000 85 45 1 54 138 18 96 1.41e-12 64.7
MS.gene072829.t1 MTR_3g105510 38.043 92 51 1 55 146 37 122 1.48e-12 65.1
MS.gene072829.t1 MTR_2g043030 41.176 85 44 1 54 138 18 96 1.76e-12 64.3
MS.gene072829.t1 MTR_5g062700 43.011 93 44 3 26 118 147 230 2.27e-12 65.5
MS.gene072829.t1 MTR_1g060910 40.230 87 26 1 37 123 1 61 2.30e-12 63.2
MS.gene072829.t1 MTR_7g021010 34.483 116 67 3 4 118 1 108 2.63e-12 63.2
MS.gene072829.t1 MTR_2g078510 58.929 56 22 1 142 197 16 70 2.98e-12 64.7
MS.gene072829.t1 MTR_7g028925 46.970 66 26 2 54 119 28 84 4.08e-12 60.5
MS.gene072829.t1 MTR_7g021010 45.946 74 33 2 46 118 2 69 5.25e-12 61.6
MS.gene072829.t1 MTR_8g090350 49.206 63 26 1 54 116 112 168 6.46e-12 63.5
MS.gene072829.t1 MTR_1g087920 34.959 123 69 3 6 125 27 141 6.75e-12 63.9
MS.gene072829.t1 MTR_2g043040 39.326 89 48 1 54 142 18 100 7.23e-12 62.8
MS.gene072829.t1 MTR_1g028560 40.909 88 41 2 55 142 115 191 7.46e-12 63.9
MS.gene072829.t1 MTR_7g020980 47.059 68 30 1 51 118 47 108 9.49e-12 61.6
MS.gene072829.t1 MTR_5g008540 44.928 69 32 1 57 125 26 88 1.38e-11 59.3
MS.gene072829.t1 MTR_8g006840 51.613 62 25 1 55 116 125 181 1.91e-11 61.2
MS.gene072829.t1 MTR_5g083330 38.614 101 47 2 40 140 20 105 1.95e-11 62.4
MS.gene072829.t1 MTR_2g015050 42.045 88 43 2 32 116 108 190 2.73e-11 61.6
MS.gene072829.t1 MTR_3g105480 37.778 90 50 1 57 146 33 116 3.28e-11 61.2
MS.gene072829.t1 MTR_4g088005 46.377 69 32 1 48 116 50 113 3.38e-11 58.9
MS.gene072829.t1 MTR_7g081805 50.000 62 26 1 55 116 61 117 3.59e-11 60.5
MS.gene072829.t1 MTR_8g032610 41.111 90 46 2 55 143 27 110 4.40e-11 61.2
MS.gene072829.t1 MTR_7g081815 50.000 62 26 1 55 116 61 117 4.60e-11 60.5
MS.gene072829.t1 MTR_2g016730 36.449 107 52 3 52 153 20 115 6.97e-11 60.8
MS.gene072829.t1 MTR_7g081795 50.000 62 26 1 55 116 60 116 8.11e-11 59.7
MS.gene072829.t1 MTR_2g089170 40.777 103 46 3 55 156 65 153 9.33e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072829.t1 AT1G63030 50.857 175 80 1 38 212 13 181 9.57e-58 181
MS.gene072829.t1 AT1G63030 50.857 175 80 1 38 212 13 181 9.57e-58 181
MS.gene072829.t1 AT1G12610 47.926 217 72 6 26 212 2 207 2.84e-55 175
MS.gene072829.t1 AT4G25470 43.162 234 89 6 5 212 1 216 9.34e-54 171
MS.gene072829.t1 AT5G51990 59.459 148 53 2 1 148 1 141 6.36e-51 164
MS.gene072829.t1 AT4G25480 46.018 226 94 6 5 212 1 216 5.58e-50 162
MS.gene072829.t1 AT4G25490 44.196 224 98 7 5 212 1 213 8.95e-44 146
MS.gene072829.t1 AT5G25810 58.511 94 33 1 51 144 32 119 2.25e-29 109
MS.gene072829.t1 AT5G11590 49.593 123 55 2 22 144 19 134 9.12e-28 105
MS.gene072829.t1 AT2G44940 57.609 92 33 1 51 142 96 181 8.59e-25 99.0
MS.gene072829.t1 AT4G32800 53.191 94 38 1 51 144 15 102 5.04e-24 95.5
MS.gene072829.t1 AT4G16750 45.528 123 56 2 13 135 3 114 5.48e-24 94.4
MS.gene072829.t1 AT2G35700 55.814 86 32 1 50 135 40 119 1.60e-23 93.6
MS.gene072829.t1 AT1G01250 44.444 117 58 2 20 135 9 119 6.93e-22 89.0
MS.gene072829.t1 AT2G36450 59.494 79 25 2 51 128 11 83 1.85e-21 87.8
MS.gene072829.t1 AT3G16280 52.941 85 34 1 51 135 57 135 2.91e-21 88.6
MS.gene072829.t1 AT3G16280 52.941 85 34 1 51 135 75 153 3.91e-21 88.6
MS.gene072829.t1 AT3G60490 51.546 97 40 2 40 135 55 145 2.15e-20 86.7
MS.gene072829.t1 AT5G52020 47.500 120 56 2 51 170 61 173 8.59e-20 84.3
MS.gene072829.t1 AT2G25820 56.098 82 30 1 54 135 25 100 1.22e-19 84.0
MS.gene072829.t1 AT1G71450 42.308 104 54 1 54 157 23 120 9.97e-19 80.5
MS.gene072829.t1 AT1G74930 41.758 91 47 1 55 145 21 105 4.00e-16 73.9
MS.gene072829.t1 AT1G19210 43.434 99 46 2 55 153 12 100 5.71e-16 73.2
MS.gene072829.t1 AT1G46768 48.387 93 37 3 50 142 27 108 8.38e-16 71.6
MS.gene072829.t1 AT4G13620 36.522 115 66 2 10 123 186 294 1.01e-15 75.1
MS.gene072829.t1 AT1G46768 48.387 93 37 3 50 142 27 108 1.05e-15 71.6
MS.gene072829.t1 AT1G46768 48.387 93 37 3 50 142 27 108 1.05e-15 71.6
MS.gene072829.t1 AT2G23340 45.745 94 39 2 55 142 28 115 1.07e-15 72.4
MS.gene072829.t1 AT3G50260 43.158 95 47 2 48 142 14 101 2.31e-15 70.9
MS.gene072829.t1 AT1G21910 54.545 66 24 1 55 120 50 109 5.95e-15 71.2
MS.gene072829.t1 AT4G36900 50.704 71 29 1 46 116 21 85 1.17e-14 70.1
MS.gene072829.t1 AT5G67190 39.286 112 46 4 55 155 21 121 1.67e-14 69.3
MS.gene072829.t1 AT2G47520 45.833 72 33 1 45 116 40 105 2.02e-14 68.9
MS.gene072829.t1 AT1G77200 54.348 92 36 1 53 144 41 126 2.86e-14 69.7
MS.gene072829.t1 AT1G22190 46.835 79 34 2 40 118 70 140 3.34e-14 69.7
MS.gene072829.t1 AT4G39780 49.254 67 28 1 50 116 88 148 7.33e-14 68.9
MS.gene072829.t1 AT2G22200 50.794 63 25 1 54 116 70 126 1.94e-13 67.8
MS.gene072829.t1 AT1G33760 48.352 91 41 1 55 145 20 104 1.94e-13 66.6
MS.gene072829.t1 AT4G31060 48.387 62 26 1 55 116 27 82 2.90e-13 65.9
MS.gene072829.t1 AT2G20880 40.449 89 45 2 30 118 164 244 2.97e-13 67.8
MS.gene072829.t1 AT1G36060 52.381 63 24 1 54 116 142 198 3.10e-13 67.8
MS.gene072829.t1 AT4G06746 47.059 68 30 1 55 122 36 97 4.83e-13 64.7
MS.gene072829.t1 AT3G16770 39.130 92 50 1 27 118 51 136 1.05e-12 65.5
MS.gene072829.t1 AT2G44840 54.839 62 23 1 55 116 92 148 1.45e-12 64.7
MS.gene072829.t1 AT5G65130 47.692 65 28 1 54 118 110 168 1.79e-12 65.1
MS.gene072829.t1 AT5G43410 44.737 76 35 2 41 116 3 71 1.81e-12 62.8
MS.gene072829.t1 AT5G65130 47.692 65 28 1 54 118 112 170 1.96e-12 65.1
MS.gene072829.t1 AT1G78080 50.794 63 25 1 54 116 151 207 2.56e-12 65.1
MS.gene072829.t1 AT1G12630 48.454 97 34 3 32 128 5 85 4.10e-12 63.2
MS.gene072829.t1 AT4G28140 47.692 65 28 1 54 118 142 200 4.42e-12 64.3
MS.gene072829.t1 AT5G21960 46.269 67 30 1 53 119 5 65 6.04e-12 62.8
MS.gene072829.t1 AT5G07580 44.872 78 36 2 49 126 106 176 2.21e-11 61.2
MS.gene072829.t1 AT5G61600 51.515 66 25 2 51 116 86 144 2.55e-11 61.6
MS.gene072829.t1 AT3G23230 46.269 67 31 1 55 121 20 81 3.36e-11 59.3
MS.gene072829.t1 AT5G13330 48.529 68 27 2 51 118 37 96 6.94e-11 60.1
MS.gene072829.t1 AT5G05410 51.613 62 24 1 55 116 79 134 8.67e-11 60.8
MS.gene072829.t1 AT5G05410 51.613 62 24 1 55 116 79 134 8.91e-11 60.5

Find 53 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGGGAGAAGGGTGTTTA+AGG 0.128785 5.3:+4579561 MS.gene072829:CDS
CTTCTCCCTGCTCTCTTCTT+TGG 0.153724 5.3:-4579550 None:intergenic
GTTGCTGCACTTGCTCTTAA+AGG 0.198231 5.3:+4579742 MS.gene072829:CDS
AAGTTCCTCAGAAGTGATTT+TGG 0.245839 5.3:+4579513 MS.gene072829:CDS
CCTCCTTCCCCAACAAATTA+TGG 0.257840 5.3:+4579994 MS.gene072829:CDS
CAAATTATGGTAGTTATAAC+TGG 0.271221 5.3:+4580007 MS.gene072829:CDS
TGTGCACGTGCAGCCATTTC+AGG 0.278245 5.3:-4579715 None:intergenic
GATTTCTTCATGTCATCTTT+TGG 0.292478 5.3:+4579442 MS.gene072829:CDS
TATAACTACCATAATTTGTT+GGG 0.332163 5.3:-4580002 None:intergenic
AAAACAATAAGTCAAGGATT+TGG 0.365596 5.3:+4579674 MS.gene072829:CDS
TTGATACTCAGGTTTCACTA+TGG 0.394923 5.3:+4580046 MS.gene072829:CDS
TGCATGGCGGTTGACGTTGC+CGG 0.406208 5.3:+4579795 MS.gene072829:CDS
GAAGAAGGAACAATAACAAA+TGG 0.418693 5.3:+4579614 MS.gene072829:CDS
GTTCATTGAGGAACAAGTTC+CGG 0.422163 5.3:+4579900 MS.gene072829:CDS
CGAATGATGCGGCGGAGATA+AGG 0.424020 5.3:+4579821 MS.gene072829:CDS
TGCTAAAATGTTTGCTGTTG+AGG 0.427561 5.3:+4579861 MS.gene072829:CDS
AACATATCCAACTCCTGAAA+TGG 0.444364 5.3:+4579702 MS.gene072829:CDS
TCTGAGGAACTTGTACGGTT+TGG 0.448003 5.3:-4579502 None:intergenic
CGTGCAGCCATTTCAGGAGT+TGG 0.460218 5.3:-4579709 None:intergenic
GGAGATAAGGAGGGCGGCCA+TGG 0.460779 5.3:+4579834 MS.gene072829:CDS
TTATAACTACCATAATTTGT+TGG 0.467212 5.3:-4580003 None:intergenic
AGCAGAACGTAGAGGCTCAT+TGG 0.471475 5.3:-4579971 None:intergenic
CATTGAGATATTTGATACTC+AGG 0.476748 5.3:+4580035 MS.gene072829:CDS
CCATAATTTGTTGGGGAAGG+AGG 0.492901 5.3:-4579994 None:intergenic
CAAAGAAGAGAGCAGGGAGA+AGG 0.505022 5.3:+4579551 MS.gene072829:CDS
AATAAGTCAAGGATTTGGCT+TGG 0.507380 5.3:+4579679 MS.gene072829:CDS
AATTTGCCAAAGAAGAGAGC+AGG 0.515612 5.3:+4579544 MS.gene072829:CDS
AAGAAGGAACAATAACAAAT+GGG 0.519116 5.3:+4579615 MS.gene072829:CDS
AAAGAAGAGAGCAGGGAGAA+GGG 0.521556 5.3:+4579552 MS.gene072829:CDS
GTTTGCTGTTGAGGACAAGA+AGG 0.527944 5.3:+4579870 MS.gene072829:CDS
CTACCATAATTTGTTGGGGA+AGG 0.538402 5.3:-4579997 None:intergenic
TGTATCGAGGAGTACGAAGA+AGG 0.543663 5.3:+4579599 MS.gene072829:CDS
TCAAATTCCGACGACACCGC+CGG 0.565367 5.3:-4579919 None:intergenic
GATAAGGAGGGCGGCCATGG+AGG 0.569228 5.3:+4579837 MS.gene072829:CDS
GTTTAAGGAGACAAGACATC+CGG 0.575697 5.3:+4579576 MS.gene072829:CDS
AAATTATGGTAGTTATAACT+GGG 0.579912 5.3:+4580008 MS.gene072829:CDS
TCACTTCTGAGGAACTTGTA+CGG 0.586438 5.3:-4579507 None:intergenic
ACAAGTTCCGGCGGTGTCGT+CGG 0.587246 5.3:+4579912 MS.gene072829:CDS
ATGATGCGGCGGAGATAAGG+AGG 0.600683 5.3:+4579824 MS.gene072829:CDS
ATTTGCCAAAGAAGAGAGCA+GGG 0.607930 5.3:+4579545 MS.gene072829:CDS
GAAGGATAGTATGTTCATTG+AGG 0.609059 5.3:+4579888 MS.gene072829:CDS
ATAACTACCATAATTTGTTG+GGG 0.610998 5.3:-4580001 None:intergenic
ACAAGACATCCGGTGTATCG+AGG 0.630846 5.3:+4579586 MS.gene072829:CDS
TGATGCCAAAATCACTTCTG+AGG 0.635581 5.3:-4579518 None:intergenic
GCCGGAGTCGAATGATGCGG+CGG 0.646749 5.3:+4579813 MS.gene072829:CDS
CTTCGTACTCCTCGATACAC+CGG 0.651638 5.3:-4579595 None:intergenic
CATTGAGGAACAAGTTCCGG+CGG 0.656816 5.3:+4579903 MS.gene072829:CDS
TCCGCCGCATCATTCGACTC+CGG 0.660450 5.3:-4579814 None:intergenic
GAAGGAGGAGCAGAACGTAG+AGG 0.666556 5.3:-4579979 None:intergenic
TGATGCGGCGGAGATAAGGA+GGG 0.673723 5.3:+4579825 MS.gene072829:CDS
TGCGGCGGAGATAAGGAGGG+CGG 0.678855 5.3:+4579828 MS.gene072829:CDS
GTTGCCGGAGTCGAATGATG+CGG 0.679657 5.3:+4579810 MS.gene072829:CDS
AATTATGGTAGTTATAACTG+GGG 0.706472 5.3:+4580009 MS.gene072829:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATGGTAGTTATAACT+GGG + chr5.3:4580008-4580027 MS.gene072829:CDS 20.0%
!! TTAACAAAAACAATAAGTCA+AGG + chr5.3:4579668-4579687 MS.gene072829:CDS 20.0%
!!! TATAACTACCATAATTTGTT+GGG - chr5.3:4580005-4580024 None:intergenic 20.0%
!!! TTATAACTACCATAATTTGT+TGG - chr5.3:4580006-4580025 None:intergenic 20.0%
!!! TTTTTGTTAACGTTATTGTT+AGG - chr5.3:4579658-4579677 None:intergenic 20.0%
! AAAACAATAAGTCAAGGATT+TGG + chr5.3:4579674-4579693 MS.gene072829:CDS 25.0%
! AAGAAGGAACAATAACAAAT+GGG + chr5.3:4579615-4579634 MS.gene072829:CDS 25.0%
! AATTATGGTAGTTATAACTG+GGG + chr5.3:4580009-4580028 MS.gene072829:CDS 25.0%
! CAAATTATGGTAGTTATAAC+TGG + chr5.3:4580007-4580026 MS.gene072829:CDS 25.0%
!!! ATAACTACCATAATTTGTTG+GGG - chr5.3:4580004-4580023 None:intergenic 25.0%
CATTGAGATATTTGATACTC+AGG + chr5.3:4580035-4580054 MS.gene072829:CDS 30.0%
GAAGAAGGAACAATAACAAA+TGG + chr5.3:4579614-4579633 MS.gene072829:CDS 30.0%
! GATTTCTTCATGTCATCTTT+TGG + chr5.3:4579442-4579461 MS.gene072829:CDS 30.0%
AACATATCCAACTCCTGAAA+TGG + chr5.3:4579702-4579721 MS.gene072829:CDS 35.0%
AATAAGTCAAGGATTTGGCT+TGG + chr5.3:4579679-4579698 MS.gene072829:CDS 35.0%
GAAGGATAGTATGTTCATTG+AGG + chr5.3:4579888-4579907 MS.gene072829:CDS 35.0%
TTGATACTCAGGTTTCACTA+TGG + chr5.3:4580046-4580065 MS.gene072829:CDS 35.0%
! AAGTTCCTCAGAAGTGATTT+TGG + chr5.3:4579513-4579532 MS.gene072829:CDS 35.0%
!! TGCTAAAATGTTTGCTGTTG+AGG + chr5.3:4579861-4579880 MS.gene072829:CDS 35.0%
!!! TTAATTTTGCTGACTCTGCA+TGG + chr5.3:4579779-4579798 MS.gene072829:CDS 35.0%
AATTTGCCAAAGAAGAGAGC+AGG + chr5.3:4579544-4579563 MS.gene072829:CDS 40.0%
ATTTGCCAAAGAAGAGAGCA+GGG + chr5.3:4579545-4579564 MS.gene072829:CDS 40.0%
GTTCATTGAGGAACAAGTTC+CGG + chr5.3:4579900-4579919 MS.gene072829:CDS 40.0%
GTTTAAGGAGACAAGACATC+CGG + chr5.3:4579576-4579595 MS.gene072829:CDS 40.0%
TGATGCCAAAATCACTTCTG+AGG - chr5.3:4579521-4579540 None:intergenic 40.0%
! TCACTTCTGAGGAACTTGTA+CGG - chr5.3:4579510-4579529 None:intergenic 40.0%
!! AAACATTTTAGCAGCCTCCA+TGG - chr5.3:4579854-4579873 None:intergenic 40.0%
!! CTACCATAATTTGTTGGGGA+AGG - chr5.3:4580000-4580019 None:intergenic 40.0%
AAAGAAGAGAGCAGGGAGAA+GGG + chr5.3:4579552-4579571 MS.gene072829:CDS 45.0%
CCTCCTTCCCCAACAAATTA+TGG + chr5.3:4579994-4580013 MS.gene072829:CDS 45.0%
GTTGCTGCACTTGCTCTTAA+AGG + chr5.3:4579742-4579761 MS.gene072829:CDS 45.0%
TCTGAGGAACTTGTACGGTT+TGG - chr5.3:4579505-4579524 None:intergenic 45.0%
! TGTATCGAGGAGTACGAAGA+AGG + chr5.3:4579599-4579618 MS.gene072829:CDS 45.0%
!! CCATAATTTGTTGGGGAAGG+AGG - chr5.3:4579997-4580016 None:intergenic 45.0%
!! GTTTGCTGTTGAGGACAAGA+AGG + chr5.3:4579870-4579889 MS.gene072829:CDS 45.0%
!!! ATTTTGCTGACTCTGCATGG+CGG + chr5.3:4579782-4579801 MS.gene072829:CDS 45.0%
ACAAGACATCCGGTGTATCG+AGG + chr5.3:4579586-4579605 MS.gene072829:CDS 50.0%
AGCAGAACGTAGAGGCTCAT+TGG - chr5.3:4579974-4579993 None:intergenic 50.0%
CAAAGAAGAGAGCAGGGAGA+AGG + chr5.3:4579551-4579570 MS.gene072829:CDS 50.0%
CATTGAGGAACAAGTTCCGG+CGG + chr5.3:4579903-4579922 MS.gene072829:CDS 50.0%
CTTCGTACTCCTCGATACAC+CGG - chr5.3:4579598-4579617 None:intergenic 50.0%
CTTCTCCCTGCTCTCTTCTT+TGG - chr5.3:4579553-4579572 None:intergenic 50.0%
!! AGCAGGGAGAAGGGTGTTTA+AGG + chr5.3:4579561-4579580 MS.gene072829:CDS 50.0%
ATGATGCGGCGGAGATAAGG+AGG + chr5.3:4579824-4579843 MS.gene072829:CDS 55.0%
CGAATGATGCGGCGGAGATA+AGG + chr5.3:4579821-4579840 MS.gene072829:CDS 55.0%
CGTGCAGCCATTTCAGGAGT+TGG - chr5.3:4579712-4579731 None:intergenic 55.0%
GAAGGAGGAGCAGAACGTAG+AGG - chr5.3:4579982-4580001 None:intergenic 55.0%
GTTGCCGGAGTCGAATGATG+CGG + chr5.3:4579810-4579829 MS.gene072829:CDS 55.0%
TCAAATTCCGACGACACCGC+CGG - chr5.3:4579922-4579941 None:intergenic 55.0%
TGATGCGGCGGAGATAAGGA+GGG + chr5.3:4579825-4579844 MS.gene072829:CDS 55.0%
TGTGCACGTGCAGCCATTTC+AGG - chr5.3:4579718-4579737 None:intergenic 55.0%
TCCGCCGCATCATTCGACTC+CGG - chr5.3:4579817-4579836 None:intergenic 60.0%
TGCATGGCGGTTGACGTTGC+CGG + chr5.3:4579795-4579814 MS.gene072829:CDS 60.0%
!! ACAAGTTCCGGCGGTGTCGT+CGG + chr5.3:4579912-4579931 MS.gene072829:CDS 60.0%
GATAAGGAGGGCGGCCATGG+AGG + chr5.3:4579837-4579856 MS.gene072829:CDS 65.0%
GCCGGAGTCGAATGATGCGG+CGG + chr5.3:4579813-4579832 MS.gene072829:CDS 65.0%
GGAGATAAGGAGGGCGGCCA+TGG + chr5.3:4579834-4579853 MS.gene072829:CDS 65.0%
TGCGGCGGAGATAAGGAGGG+CGG + chr5.3:4579828-4579847 MS.gene072829:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 4579439 4580083 4579439 ID=MS.gene072829
chr5.3 mRNA 4579439 4580083 4579439 ID=MS.gene072829.t1;Parent=MS.gene072829
chr5.3 exon 4579439 4580083 4579439 ID=MS.gene072829.t1.exon1;Parent=MS.gene072829.t1
chr5.3 CDS 4579439 4580083 4579439 ID=cds.MS.gene072829.t1;Parent=MS.gene072829.t1
Gene Sequence

>MS.gene072829

ATGGATTTCTTCATGTCATCTTTTGGTGAGTACTCAGACACTTCTTCTTCAGAAACAAGTTCACCAAACCGTACAAGTTCCTCAGAAGTGATTTTGGCATCAGCTAATTTGCCAAAGAAGAGAGCAGGGAGAAGGGTGTTTAAGGAGACAAGACATCCGGTGTATCGAGGAGTACGAAGAAGGAACAATAACAAATGGGTTTGTGAGATGAGAGTTCCTAACAATAACGTTAACAAAAACAATAAGTCAAGGATTTGGCTTGGAACATATCCAACTCCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTGCTCTTAAAGGAAAATCAGCTTGTCTTAATTTTGCTGACTCTGCATGGCGGTTGACGTTGCCGGAGTCGAATGATGCGGCGGAGATAAGGAGGGCGGCCATGGAGGCTGCTAAAATGTTTGCTGTTGAGGACAAGAAGGATAGTATGTTCATTGAGGAACAAGTTCCGGCGGTGTCGTCGGAATTTGAAAGCATGCATGATTTGCTTCTAAGAATTGCCAATGAGCCTCTACGTTCTGCTCCTCCTTCCCCAACAAATTATGGTAGTTATAACTGGGGTGACATTGAGATATTTGATACTCAGGTTTCACTATGGAGCTTTTCTATTTGA
Protein sequence

>MS.gene072829.t1

MDFFMSSFGEYSDTSSSETSSPNRTSSSEVILASANLPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNNNVNKNNKSRIWLGTYPTPEMAARAHDVAALALKGKSACLNFADSAWRLTLPESNDAAEIRRAAMEAAKMFAVEDKKDSMFIEEQVPAVSSEFESMHDLLLRIANEPLRSAPPSPTNYGSYNWGDIEIFDTQVSLWSFSI