Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07291.t1 | XP_003591397.1 | 96.9 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 6.20E-181 | 643.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07291.t1 | G7ICX7 | 96.9 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 4.5e-181 | 643.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053144 | MS.gene07291 | 0.818524 | 1.87E-52 | -1.69E-46 |
| MS.gene054554 | MS.gene07291 | 0.800382 | 1.48E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene07291 | 0.802068 | 6.69E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene07291 | 0.806431 | 8.25E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07291.t1 | MTR_1g086990 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 651 |
| MS.gene07291.t1 | MTR_3g096580 | 92.135 | 89 | 7 | 0 | 239 | 327 | 9 | 97 | 2.41e-51 | 166 |
| MS.gene07291.t1 | MTR_3g096562 | 91.860 | 86 | 7 | 0 | 242 | 327 | 62 | 147 | 8.67e-47 | 162 |
| MS.gene07291.t1 | MTR_7g020840 | 32.616 | 279 | 168 | 10 | 37 | 307 | 35 | 301 | 1.15e-30 | 119 |
| MS.gene07291.t1 | MTR_1g030760 | 32.215 | 298 | 178 | 10 | 15 | 302 | 14 | 297 | 1.83e-28 | 113 |
| MS.gene07291.t1 | MTR_6g021910 | 33.333 | 279 | 162 | 11 | 37 | 302 | 34 | 301 | 4.71e-27 | 110 |
| MS.gene07291.t1 | MTR_3g070770 | 29.893 | 281 | 166 | 11 | 55 | 307 | 6 | 283 | 3.36e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07291.t1 | AT2G16760 | 64.939 | 328 | 104 | 8 | 6 | 327 | 5 | 327 | 3.86e-142 | 405 |
| MS.gene07291.t1 | AT2G47370 | 60.597 | 335 | 119 | 8 | 1 | 327 | 1 | 330 | 2.64e-134 | 385 |
| MS.gene07291.t1 | AT2G47370 | 59.286 | 280 | 103 | 6 | 1 | 273 | 1 | 276 | 3.40e-108 | 317 |
| MS.gene07291.t1 | AT5G28660 | 46.377 | 207 | 66 | 4 | 67 | 273 | 5 | 166 | 1.09e-45 | 153 |
| MS.gene07291.t1 | AT2G01410 | 30.032 | 313 | 184 | 12 | 4 | 300 | 15 | 308 | 8.04e-25 | 103 |
Find 81 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTTACTCAACTTTC+TGG | 0.113429 | 1.4:-69347122 | MS.gene07291:CDS |
| AAAACATTGGTTGGCCTTAA+TGG | 0.152759 | 1.4:-69344746 | MS.gene07291:CDS |
| AAGAGAATGGCGAGGAATTT+TGG | 0.197496 | 1.4:+69347512 | None:intergenic |
| CCAGCAACCACAACCTTATT+AGG | 0.208425 | 1.4:+69344572 | None:intergenic |
| ATTGGAGGGCCACTTTATTT+TGG | 0.228396 | 1.4:-69344617 | MS.gene07291:CDS |
| GTGAAGATAATTAAGGTTAT+TGG | 0.247604 | 1.4:-69344635 | MS.gene07291:CDS |
| CCTAATAAGGTTGTGGTTGC+TGG | 0.247906 | 1.4:-69344572 | MS.gene07291:CDS |
| CATCCCCAACGACGCATTTC+CGG | 0.257835 | 1.4:+69347247 | None:intergenic |
| AGATTAGTGGAGAGTTTAGA+TGG | 0.265703 | 1.4:-69344536 | MS.gene07291:CDS |
| AGAGTTATTGTCTCCTAATA+AGG | 0.268390 | 1.4:-69344585 | MS.gene07291:CDS |
| CCGGAGTAGGAATCGGATTC+TGG | 0.291646 | 1.4:-69347216 | MS.gene07291:CDS |
| GTGGTTGCTGGAAATCCTTC+AGG | 0.294870 | 1.4:-69344560 | MS.gene07291:CDS |
| CAAGTAAAATATGGAAAGTT+GGG | 0.299945 | 1.4:-69344829 | MS.gene07291:CDS |
| CAATTCCAACCATATGGTTT+AGG | 0.317125 | 1.4:+69344426 | None:intergenic |
| ATGTAAAAGCAAGTAAAATA+TGG | 0.332923 | 1.4:-69344838 | MS.gene07291:CDS |
| AGAGGAAGTGAAGATAATTA+AGG | 0.344563 | 1.4:-69344642 | MS.gene07291:CDS |
| CTAAACCATATGGTTGGAAT+TGG | 0.352983 | 1.4:-69344425 | MS.gene07291:CDS |
| TTGGCCGGAAATGCGTCGTT+GGG | 0.356790 | 1.4:-69347251 | MS.gene07291:CDS |
| TCGGTTGTTGCAAAATTCTC+AGG | 0.364403 | 1.4:-69344500 | MS.gene07291:CDS |
| GCAAGTAAAATATGGAAAGT+TGG | 0.367402 | 1.4:-69344830 | MS.gene07291:CDS |
| GGTGGTAAACAATTCCATTA+AGG | 0.371380 | 1.4:+69344732 | None:intergenic |
| CTCAGGGCCTAAACATCGTT+TGG | 0.372687 | 1.4:-69344483 | MS.gene07291:CDS |
| ATATGGAAAGTTGGGGTTGA+TGG | 0.388063 | 1.4:-69344821 | MS.gene07291:CDS |
| GGTATCCAATTCCAACCATA+TGG | 0.404384 | 1.4:+69344420 | None:intergenic |
| ATTACTATTAAGAATCCATC+TGG | 0.406971 | 1.4:+69344710 | None:intergenic |
| TATGGAAAGTTGGGGTTGAT+GGG | 0.450804 | 1.4:-69344820 | MS.gene07291:CDS |
| CGATTGACCGGAGTAGGAAT+CGG | 0.459191 | 1.4:-69347223 | MS.gene07291:CDS |
| TAGTGGAGAGTTTAGATGGA+TGG | 0.469672 | 1.4:-69344532 | MS.gene07291:CDS |
| TCTTCCAATACTGTTCCCTC+TGG | 0.482175 | 1.4:+69347299 | None:intergenic |
| AGATGGATGGAATACAGCTT+CGG | 0.484091 | 1.4:-69344519 | MS.gene07291:CDS |
| ATCACCAGAGGGAACAGTAT+TGG | 0.485188 | 1.4:-69347303 | MS.gene07291:CDS |
| GTTGTAAACGCTGATGTTAG+AGG | 0.486804 | 1.4:-69347194 | MS.gene07291:CDS |
| AAATCCTTCAGGGAGATTAG+TGG | 0.494271 | 1.4:-69344549 | MS.gene07291:CDS |
| GTTGGCCGGAAATGCGTCGT+TGG | 0.505279 | 1.4:-69347252 | MS.gene07291:CDS |
| AATCCATCTCCAAAATAAAG+TGG | 0.505424 | 1.4:+69344608 | None:intergenic |
| CGGTTGTTGCAAAATTCTCA+GGG | 0.508725 | 1.4:-69344499 | MS.gene07291:CDS |
| CACTATTCACTCCAAAAGAA+TGG | 0.508816 | 1.4:-69344772 | MS.gene07291:CDS |
| GATTGATTTAACACAGGGAG+AGG | 0.526887 | 1.4:-69344660 | MS.gene07291:CDS |
| GAAAGTGTACCTAAACCATA+TGG | 0.527065 | 1.4:-69344435 | MS.gene07291:CDS |
| AAGATAATTAAGGTTATTGG+AGG | 0.528555 | 1.4:-69344632 | MS.gene07291:CDS |
| GATGATTATGCCGATGGGTA+TGG | 0.529205 | 1.4:+69347478 | None:intergenic |
| TGGTTGCTGGAAATCCTTCA+GGG | 0.530888 | 1.4:-69344559 | MS.gene07291:CDS |
| CTGAAAGAAACGGAGTTGGC+CGG | 0.532209 | 1.4:-69347266 | MS.gene07291:CDS |
| TTTCAGAGAATGTGCAAAGT+GGG | 0.535552 | 1.4:-69347399 | MS.gene07291:CDS |
| AAGAGAGATGATTATGCCGA+TGG | 0.536931 | 1.4:+69347472 | None:intergenic |
| GGAATTGTTTACCACCCAGA+TGG | 0.538287 | 1.4:-69344725 | MS.gene07291:CDS |
| TAGTGATAGACGTGAGTTGA+GGG | 0.540159 | 1.4:+69347437 | None:intergenic |
| ATTGTCTCCTAATAAGGTTG+TGG | 0.545717 | 1.4:-69344579 | MS.gene07291:CDS |
| CCAGAATCCGATTCCTACTC+CGG | 0.552410 | 1.4:+69347216 | None:intergenic |
| AGTGACTGTTCTGAAAGAAA+CGG | 0.554947 | 1.4:-69347276 | MS.gene07291:CDS |
| CAGAAAGTTGAGTAAGAAAG+AGG | 0.557479 | 1.4:+69347123 | None:intergenic |
| GAATGGCACAAAACATTGGT+TGG | 0.557627 | 1.4:-69344755 | MS.gene07291:CDS |
| AACTGCAACATCGTCTGCAA+AGG | 0.560005 | 1.4:+69344889 | None:intergenic |
| GATGTAGCCAAACGATGTTT+AGG | 0.562054 | 1.4:+69344476 | None:intergenic |
| AAAAGAATGGCACAAAACAT+TGG | 0.562268 | 1.4:-69344759 | MS.gene07291:CDS |
| GGCTGTGAAGAGGAAGAGAA+TGG | 0.566959 | 1.4:+69347499 | None:intergenic |
| CTCTCCACTAATCTCCCTGA+AGG | 0.567971 | 1.4:+69344545 | None:intergenic |
| GTTCAAGATTGATTTAACAC+AGG | 0.568807 | 1.4:-69344666 | MS.gene07291:CDS |
| ACATCAGCTACTGTGAAGGA+TGG | 0.570230 | 1.4:-69344458 | MS.gene07291:CDS |
| CTCTTCACAGCCATACCCAT+CGG | 0.579141 | 1.4:-69347488 | MS.gene07291:CDS |
| TTCAAGATTGATTTAACACA+GGG | 0.581645 | 1.4:-69344665 | MS.gene07291:CDS |
| CATCAGCTACTGTGAAGGAT+GGG | 0.589586 | 1.4:-69344457 | MS.gene07291:CDS |
| CGTTGGGGATGACGATTGAC+CGG | 0.594121 | 1.4:-69347235 | MS.gene07291:CDS |
| GTGTACCTAAACCATATGGT+TGG | 0.595572 | 1.4:-69344431 | MS.gene07291:CDS |
| AATCGGTCAAATTTCCGTAC+CGG | 0.599124 | 1.4:-69347333 | MS.gene07291:CDS |
| AAAGAAGCATGCTATTGTTG+AGG | 0.609816 | 1.4:-69344393 | MS.gene07291:CDS |
| TGTTCTGAAAGAAACGGAGT+TGG | 0.613305 | 1.4:-69347270 | MS.gene07291:CDS |
| GTCTATCACTATCACAGCAA+AGG | 0.614577 | 1.4:-69347425 | MS.gene07291:CDS |
| GGCTACATCAGCTACTGTGA+AGG | 0.617487 | 1.4:-69344462 | MS.gene07291:CDS |
| AAGTAAAATATGGAAAGTTG+GGG | 0.624724 | 1.4:-69344828 | MS.gene07291:CDS |
| AGAGAGATGATTATGCCGAT+GGG | 0.637293 | 1.4:+69347473 | None:intergenic |
| TGGCCGGAAATGCGTCGTTG+GGG | 0.638022 | 1.4:-69347250 | MS.gene07291:CDS |
| GGATGACGATTGACCGGAGT+AGG | 0.649044 | 1.4:-69347229 | MS.gene07291:CDS |
| TTACTATTAAGAATCCATCT+GGG | 0.651021 | 1.4:+69344711 | None:intergenic |
| GATGTTGCAGTTGATGCAGA+AGG | 0.659638 | 1.4:-69344878 | MS.gene07291:CDS |
| CGATGGGTATGGCTGTGAAG+AGG | 0.679741 | 1.4:+69347489 | None:intergenic |
| AGATAATTAAGGTTATTGGA+GGG | 0.679870 | 1.4:-69344631 | MS.gene07291:CDS |
| TGAAGAGGAAGAGAATGGCG+AGG | 0.681971 | 1.4:+69347504 | None:intergenic |
| ATAGTGATAGACGTGAGTTG+AGG | 0.689700 | 1.4:+69347436 | None:intergenic |
| CTATTAAGAATCCATCTGGG+TGG | 0.712337 | 1.4:+69344714 | None:intergenic |
| TTGCTTATGATCTTTCTACG+TGG | 0.722273 | 1.4:-69347151 | MS.gene07291:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATATTAATTTCTAATTTA+TGG | - | chr1.4:69346869-69346888 | MS.gene07291:intron | 10.0% |
| !! | TTAATAATTCAATATAAGAT+GGG | - | chr1.4:69346100-69346119 | MS.gene07291:intron | 10.0% |
| !! | TTTAATAATTCAATATAAGA+TGG | - | chr1.4:69346099-69346118 | MS.gene07291:intron | 10.0% |
| !!! | ATCAAGTTTTTTATATAAAT+TGG | + | chr1.4:69344970-69344989 | None:intergenic | 10.0% |
| !!! | TAAATTATAAGTCTTTTTTT+GGG | + | chr1.4:69345278-69345297 | None:intergenic | 10.0% |
| !!! | TCAAGTTTTTTATATAAATT+GGG | + | chr1.4:69344969-69344988 | None:intergenic | 10.0% |
| !!! | TCATTTACTTTTTTTTTTTT+TGG | + | chr1.4:69345824-69345843 | None:intergenic | 10.0% |
| !!! | TTAAATTATAAGTCTTTTTT+TGG | + | chr1.4:69345279-69345298 | None:intergenic | 10.0% |
| !!! | TTTGAATTAGTTATTTATTT+TGG | + | chr1.4:69345366-69345385 | None:intergenic | 10.0% |
| !!! | TTTTCATATATATAAAACAA+CGG | + | chr1.4:69346515-69346534 | None:intergenic | 10.0% |
| !! | AAGTTGTTTATAAATATGAT+CGG | + | chr1.4:69346598-69346617 | None:intergenic | 15.0% |
| !! | ATATAAAAAACTTGATGTAA+AGG | - | chr1.4:69344974-69344993 | MS.gene07291:intron | 15.0% |
| !! | TAAATAATTGAGTCAAAAAT+TGG | + | chr1.4:69346973-69346992 | None:intergenic | 15.0% |
| !! | TAGTAAATAAAGTCTAAATA+AGG | + | chr1.4:69346490-69346509 | None:intergenic | 15.0% |
| !! | TTGACTCAATTATTTAATAT+TGG | - | chr1.4:69346977-69346996 | MS.gene07291:intron | 15.0% |
| !!! | AAAGACTTATAATTTAAGAT+AGG | - | chr1.4:69345282-69345301 | MS.gene07291:intron | 15.0% |
| !!! | AAGACTTATAATTTAAGATA+GGG | - | chr1.4:69345283-69345302 | MS.gene07291:intron | 15.0% |
| !!! | CTTTATTTAATGAATCTAAA+AGG | - | chr1.4:69346680-69346699 | MS.gene07291:intron | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+AGG | + | chr1.4:69346682-69346701 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | + | chr1.4:69346682-69346701 | None:intergenic | 15.0% |
| !!! | TTTGTAGATCTTTTTTTTTT+TGG | - | chr1.4:69345603-69345622 | MS.gene07291:intron | 15.0% |
| !! | AATGAAATGAAAATAAGAGA+GGG | + | chr1.4:69345082-69345101 | None:intergenic | 20.0% |
| !! | ATGTAAAAGCAAGTAAAATA+TGG | - | chr1.4:69347080-69347099 | MS.gene07291:intron | 20.0% |
| !! | CCTAAAAACATGAATATATT+CGG | + | chr1.4:69344918-69344937 | None:intergenic | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | - | chr1.4:69346728-69346747 | MS.gene07291:intron | 20.0% |
| !! | TAATGAAATGAAAATAAGAG+AGG | + | chr1.4:69345083-69345102 | None:intergenic | 20.0% |
| !! | TAATTTATGGTGATATTGTT+GGG | - | chr1.4:69346882-69346901 | MS.gene07291:intron | 20.0% |
| !! | TAGTAAAATGTGAAAACAAT+TGG | - | chr1.4:69346409-69346428 | MS.gene07291:intron | 20.0% |
| !! | TTGGAACAGTTAAAAAAATA+TGG | - | chr1.4:69346428-69346447 | MS.gene07291:intron | 20.0% |
| !! | TTTAATATTGTACATGCATA+TGG | - | chr1.4:69345982-69346001 | MS.gene07291:intron | 20.0% |
| !!! | ATATGTTTAGAATTGTCAAA+TGG | - | chr1.4:69345173-69345192 | MS.gene07291:intron | 20.0% |
| !!! | CGAATATATTCATGTTTTTA+GGG | - | chr1.4:69344916-69344935 | MS.gene07291:intron | 20.0% |
| !!! | GTTTTTTATATAAATTGGGA+CGG | + | chr1.4:69344965-69344984 | None:intergenic | 20.0% |
| ! | AAGATAATTAAGGTTATTGG+AGG | - | chr1.4:69347286-69347305 | MS.gene07291:CDS | 25.0% |
| ! | AAGTAAAATATGGAAAGTTG+GGG | - | chr1.4:69347090-69347109 | MS.gene07291:intron | 25.0% |
| ! | AGATAATTAAGGTTATTGGA+GGG | - | chr1.4:69347287-69347306 | MS.gene07291:CDS | 25.0% |
| ! | ATAAGATGACATTGAATGAT+TGG | + | chr1.4:69345035-69345054 | None:intergenic | 25.0% |
| ! | ATATCGGTGAAATTAAATTC+AGG | - | chr1.4:69345431-69345450 | MS.gene07291:intron | 25.0% |
| ! | ATTACTATTAAGAATCCATC+TGG | + | chr1.4:69347211-69347230 | None:intergenic | 25.0% |
| ! | CAAGTAAAATATGGAAAGTT+GGG | - | chr1.4:69347089-69347108 | MS.gene07291:intron | 25.0% |
| ! | CGAAAAAAGAGTTTATGAAA+CGG | + | chr1.4:69344558-69344577 | None:intergenic | 25.0% |
| ! | CTAATTTATGGTGATATTGT+TGG | - | chr1.4:69346881-69346900 | MS.gene07291:intron | 25.0% |
| ! | GAAGAACAAAAATACTTACT+AGG | + | chr1.4:69344823-69344842 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | - | chr1.4:69345240-69345259 | MS.gene07291:intron | 25.0% |
| ! | GTGAAGATAATTAAGGTTAT+TGG | - | chr1.4:69347283-69347302 | MS.gene07291:CDS | 25.0% |
| ! | GTTGACCAAACTTTATATAT+AGG | - | chr1.4:69346792-69346811 | MS.gene07291:intron | 25.0% |
| ! | TCCAACAGATAAAAAATACT+TGG | + | chr1.4:69345850-69345869 | None:intergenic | 25.0% |
| ! | TGCATAATATATGTAAGGTT+TGG | - | chr1.4:69345245-69345264 | MS.gene07291:intron | 25.0% |
| ! | TTACTATTAAGAATCCATCT+GGG | + | chr1.4:69347210-69347229 | None:intergenic | 25.0% |
| ! | TTGTGTTGTATTGTATATCT+TGG | + | chr1.4:69345887-69345906 | None:intergenic | 25.0% |
| ! | TTGTTTATAAATATGATCGG+AGG | + | chr1.4:69346595-69346614 | None:intergenic | 25.0% |
| !! | AGGAGTTTAACATCTTTTAT+CGG | + | chr1.4:69345754-69345773 | None:intergenic | 25.0% |
| !! | ATAGTAATTCACACTTTTAG+TGG | - | chr1.4:69347223-69347242 | MS.gene07291:CDS | 25.0% |
| !! | CCGAATATATTCATGTTTTT+AGG | - | chr1.4:69344915-69344934 | MS.gene07291:intron | 25.0% |
| !! | TAAGGTTGATTGTCAAAATT+TGG | + | chr1.4:69346305-69346324 | None:intergenic | 25.0% |
| !! | TTCAAGATTGATTTAACACA+GGG | - | chr1.4:69347253-69347272 | MS.gene07291:CDS | 25.0% |
| !!! | ACCAAGTATTTTTTATCTGT+TGG | - | chr1.4:69345846-69345865 | MS.gene07291:intron | 25.0% |
| !!! | TTCATAAACTCTTTTTTCGA+AGG | - | chr1.4:69344559-69344578 | MS.gene07291:CDS | 25.0% |
| AAAAAGAGTTTATGAAACGG+TGG | + | chr1.4:69344555-69344574 | None:intergenic | 30.0% | |
| AAAAGAATGGCACAAAACAT+TGG | - | chr1.4:69347159-69347178 | MS.gene07291:CDS | 30.0% | |
| AAATACGTGTCGTGATATAT+CGG | - | chr1.4:69345415-69345434 | MS.gene07291:intron | 30.0% | |
| AACTTTATATATAGGACCAG+AGG | - | chr1.4:69346800-69346819 | MS.gene07291:intron | 30.0% | |
| AATCCATCTCCAAAATAAAG+TGG | + | chr1.4:69347313-69347332 | None:intergenic | 30.0% | |
| AGAGGAAGTGAAGATAATTA+AGG | - | chr1.4:69347276-69347295 | MS.gene07291:CDS | 30.0% | |
| AGAGTTATTGTCTCCTAATA+AGG | - | chr1.4:69347333-69347352 | MS.gene07291:CDS | 30.0% | |
| ATGTGAAAACTGAGCAATTA+AGG | + | chr1.4:69346323-69346342 | None:intergenic | 30.0% | |
| CATTCATCTGTATTCAAACT+TGG | - | chr1.4:69345492-69345511 | MS.gene07291:intron | 30.0% | |
| CTGGTCCTATATATAAAGTT+TGG | + | chr1.4:69346800-69346819 | None:intergenic | 30.0% | |
| GCAAGTAAAATATGGAAAGT+TGG | - | chr1.4:69347088-69347107 | MS.gene07291:intron | 30.0% | |
| TATCAACTGAGCTAAGTTTA+GGG | + | chr1.4:69345212-69345231 | None:intergenic | 30.0% | |
| TGCTTATAAATGTGATCAGA+GGG | - | chr1.4:69346757-69346776 | MS.gene07291:intron | 30.0% | |
| TGTAAAACAATAATCACCTC+AGG | + | chr1.4:69345541-69345560 | None:intergenic | 30.0% | |
| TTATCAACTGAGCTAAGTTT+AGG | + | chr1.4:69345213-69345232 | None:intergenic | 30.0% | |
| TTGCTTATAAATGTGATCAG+AGG | - | chr1.4:69346756-69346775 | MS.gene07291:intron | 30.0% | |
| ! | AATTGTCTTTTCCACTACAA+TGG | + | chr1.4:69346378-69346397 | None:intergenic | 30.0% |
| ! | ACAATAGCATGCTTCTTTTT+AGG | + | chr1.4:69347523-69347542 | None:intergenic | 30.0% |
| ! | CAATAGCATGCTTCTTTTTA+GGG | + | chr1.4:69347522-69347541 | None:intergenic | 30.0% |
| ! | GTTAACTCTTGTTATGTTGT+AGG | + | chr1.4:69345779-69345798 | None:intergenic | 30.0% |
| ! | GTTCAAGATTGATTTAACAC+AGG | - | chr1.4:69347252-69347271 | MS.gene07291:CDS | 30.0% |
| ! | TATGGTTGCTTTGTTATGTT+TGG | - | chr1.4:69346000-69346019 | MS.gene07291:intron | 30.0% |
| !! | AATGTTTTGTGCCATTCTTT+TGG | + | chr1.4:69347160-69347179 | None:intergenic | 30.0% |
| !! | GAGGTGATTATTGTTTTACA+TGG | - | chr1.4:69345541-69345560 | MS.gene07291:intron | 30.0% |
| !!! | ATAAACTCTTTTTTCGAAGG+TGG | - | chr1.4:69344562-69344581 | MS.gene07291:CDS | 30.0% |
| !!! | ATTCTTTTGGAGTGAATAGT+GGG | + | chr1.4:69347147-69347166 | None:intergenic | 30.0% |
| !!! | GTTCTCTTTGTTTTTATCGA+TGG | - | chr1.4:69346203-69346222 | MS.gene07291:intron | 30.0% |
| AAAGAGAACAATAAACGTGC+AGG | + | chr1.4:69346192-69346211 | None:intergenic | 35.0% | |
| AGATTAGTGGAGAGTTTAGA+TGG | - | chr1.4:69347382-69347401 | MS.gene07291:CDS | 35.0% | |
| ATCAACTGAGCTAAGTTTAG+GGG | + | chr1.4:69345211-69345230 | None:intergenic | 35.0% | |
| ATTGTCTCCTAATAAGGTTG+TGG | - | chr1.4:69347339-69347358 | MS.gene07291:CDS | 35.0% | |
| CAACTCAACATCTAGATATG+AGG | + | chr1.4:69346278-69346297 | None:intergenic | 35.0% | |
| CAATTCCAACCATATGGTTT+AGG | + | chr1.4:69347495-69347514 | None:intergenic | 35.0% | |
| CACTATTCACTCCAAAAGAA+TGG | - | chr1.4:69347146-69347165 | MS.gene07291:CDS | 35.0% | |
| CAGAAAGTTGAGTAAGAAAG+AGG | + | chr1.4:69344798-69344817 | None:intergenic | 35.0% | |
| CTAAACCATATGGTTGGAAT+TGG | - | chr1.4:69347493-69347512 | MS.gene07291:CDS | 35.0% | |
| CTATATTGAAATGTGCTAGC+TGG | - | chr1.4:69346921-69346940 | MS.gene07291:intron | 35.0% | |
| CTCTTTCTTACTCAACTTTC+TGG | - | chr1.4:69344796-69344815 | MS.gene07291:CDS | 35.0% | |
| GATGTAAAGGAGAGTTTAGT+TGG | - | chr1.4:69344987-69345006 | MS.gene07291:intron | 35.0% | |
| GCATGGTGTGCATATTATAT+GGG | + | chr1.4:69346165-69346184 | None:intergenic | 35.0% | |
| GGTGGTAAACAATTCCATTA+AGG | + | chr1.4:69347189-69347208 | None:intergenic | 35.0% | |
| TGAAAACGTGAAGACTAACA+TGG | - | chr1.4:69345708-69345727 | MS.gene07291:intron | 35.0% | |
| TGCATGGTGTGCATATTATA+TGG | + | chr1.4:69346166-69346185 | None:intergenic | 35.0% | |
| TTGCTTATGATCTTTCTACG+TGG | - | chr1.4:69344767-69344786 | MS.gene07291:CDS | 35.0% | |
| TTTCAGAGAATGTGCAAAGT+GGG | - | chr1.4:69344519-69344538 | MS.gene07291:CDS | 35.0% | |
| ! | AAAGAAGCATGCTATTGTTG+AGG | - | chr1.4:69347525-69347544 | MS.gene07291:CDS | 35.0% |
| ! | AAGGAGAGTTTAGTTGGTAT+TGG | - | chr1.4:69344993-69345012 | MS.gene07291:intron | 35.0% |
| ! | CTCTAGAAGGTTAAAGACAA+AGG | - | chr1.4:69346841-69346860 | MS.gene07291:intron | 35.0% |
| ! | CTCTTGTTATGTTGTAGGAT+AGG | + | chr1.4:69345774-69345793 | None:intergenic | 35.0% |
| ! | GAAAGTGTACCTAAACCATA+TGG | - | chr1.4:69347483-69347502 | MS.gene07291:CDS | 35.0% |
| ! | TTATGTTTGGAGCGTAGTAA+AGG | - | chr1.4:69346013-69346032 | MS.gene07291:intron | 35.0% |
| ! | TTTTCAGAGAATGTGCAAAG+TGG | - | chr1.4:69344518-69344537 | MS.gene07291:CDS | 35.0% |
| !! | AAAACATTGGTTGGCCTTAA+TGG | - | chr1.4:69347172-69347191 | MS.gene07291:CDS | 35.0% |
| !! | AATGTTAACTTGTGCGCTTA+AGG | - | chr1.4:69346124-69346143 | MS.gene07291:intron | 35.0% |
| !! | AGTGACTGTTCTGAAAGAAA+CGG | - | chr1.4:69344642-69344661 | MS.gene07291:CDS | 35.0% |
| !!! | CATTCTTTTGGAGTGAATAG+TGG | + | chr1.4:69347148-69347167 | None:intergenic | 35.0% |
| !!! | TCTTTTTTCGAAGGTGGAAT+CGG | - | chr1.4:69344568-69344587 | MS.gene07291:CDS | 35.0% |
| AAATCCTTCAGGGAGATTAG+TGG | - | chr1.4:69347369-69347388 | MS.gene07291:CDS | 40.0% | |
| AAGAGAGATGATTATGCCGA+TGG | + | chr1.4:69344449-69344468 | None:intergenic | 40.0% | |
| AAGTGTGTGTAAGTTTCCTG+AGG | - | chr1.4:69345522-69345541 | MS.gene07291:intron | 40.0% | |
| AATCGGTCAAATTTCCGTAC+CGG | - | chr1.4:69344585-69344604 | MS.gene07291:CDS | 40.0% | |
| AGAGAGATGATTATGCCGAT+GGG | + | chr1.4:69344448-69344467 | None:intergenic | 40.0% | |
| AGATGGATGGAATACAGCTT+CGG | - | chr1.4:69347399-69347418 | MS.gene07291:CDS | 40.0% | |
| ATAGTGATAGACGTGAGTTG+AGG | + | chr1.4:69344485-69344504 | None:intergenic | 40.0% | |
| ATATGGAAAGTTGGGGTTGA+TGG | - | chr1.4:69347097-69347116 | MS.gene07291:intron | 40.0% | |
| ATTAAGTAGCCAGTATCCCA+TGG | + | chr1.4:69345942-69345961 | None:intergenic | 40.0% | |
| CAGAGCTTTCATGAATCGAA+AGG | + | chr1.4:69346238-69346257 | None:intergenic | 40.0% | |
| CGGTTGTTGCAAAATTCTCA+GGG | - | chr1.4:69347419-69347438 | MS.gene07291:CDS | 40.0% | |
| CTATTAAGAATCCATCTGGG+TGG | + | chr1.4:69347207-69347226 | None:intergenic | 40.0% | |
| GAATGGCACAAAACATTGGT+TGG | - | chr1.4:69347163-69347182 | MS.gene07291:CDS | 40.0% | |
| GATGTAGCCAAACGATGTTT+AGG | + | chr1.4:69347445-69347464 | None:intergenic | 40.0% | |
| GGTATCCAATTCCAACCATA+TGG | + | chr1.4:69347501-69347520 | None:intergenic | 40.0% | |
| GTCTATCACTATCACAGCAA+AGG | - | chr1.4:69344493-69344512 | MS.gene07291:CDS | 40.0% | |
| GTGTACCTAAACCATATGGT+TGG | - | chr1.4:69347487-69347506 | MS.gene07291:CDS | 40.0% | |
| GTTGTAAACGCTGATGTTAG+AGG | - | chr1.4:69344724-69344743 | MS.gene07291:CDS | 40.0% | |
| TAGTGGAGAGTTTAGATGGA+TGG | - | chr1.4:69347386-69347405 | MS.gene07291:CDS | 40.0% | |
| TCGATTCATGAAAGCTCTGT+AGG | - | chr1.4:69346239-69346258 | MS.gene07291:intron | 40.0% | |
| TCGGTTGTTGCAAAATTCTC+AGG | - | chr1.4:69347418-69347437 | MS.gene07291:CDS | 40.0% | |
| TCTCATCACCTGCATTGAAT+GGG | + | chr1.4:69347006-69347025 | None:intergenic | 40.0% | |
| TTCTCATCACCTGCATTGAA+TGG | + | chr1.4:69347007-69347026 | None:intergenic | 40.0% | |
| ! | AAGAGAATGGCGAGGAATTT+TGG | + | chr1.4:69344409-69344428 | None:intergenic | 40.0% |
| ! | CCTATTGGTTGAACTCTAGA+AGG | - | chr1.4:69346828-69346847 | MS.gene07291:intron | 40.0% |
| ! | GATTGATTTAACACAGGGAG+AGG | - | chr1.4:69347258-69347277 | MS.gene07291:CDS | 40.0% |
| ! | TAGTGATAGACGTGAGTTGA+GGG | + | chr1.4:69344484-69344503 | None:intergenic | 40.0% |
| ! | TATGGAAAGTTGGGGTTGAT+GGG | - | chr1.4:69347098-69347117 | MS.gene07291:intron | 40.0% |
| ! | TGGTGATTCTTTTTCCGGTA+CGG | + | chr1.4:69344602-69344621 | None:intergenic | 40.0% |
| !! | ATTGGAGGGCCACTTTATTT+TGG | - | chr1.4:69347301-69347320 | MS.gene07291:CDS | 40.0% |
| !! | CCTTCTAGAGTTCAACCAAT+AGG | + | chr1.4:69346831-69346850 | None:intergenic | 40.0% |
| !! | TGTTCTGAAAGAAACGGAGT+TGG | - | chr1.4:69344648-69344667 | MS.gene07291:CDS | 40.0% |
| AACTGCAACATCGTCTGCAA+AGG | + | chr1.4:69347032-69347051 | None:intergenic | 45.0% | |
| AAGGCCAGCGATATGAAGAA+CGG | - | chr1.4:69346032-69346051 | MS.gene07291:intron | 45.0% | |
| ACATCAGCTACTGTGAAGGA+TGG | - | chr1.4:69347460-69347479 | MS.gene07291:CDS | 45.0% | |
| ACCGGAAAAAGAATCACCAG+AGG | - | chr1.4:69344603-69344622 | MS.gene07291:CDS | 45.0% | |
| ATAAACGTGCAGGTCATGCA+TGG | + | chr1.4:69346182-69346201 | None:intergenic | 45.0% | |
| ATCACCAGAGGGAACAGTAT+TGG | - | chr1.4:69344615-69344634 | MS.gene07291:CDS | 45.0% | |
| CAACCAATAGGTAGTACCTC+TGG | + | chr1.4:69346819-69346838 | None:intergenic | 45.0% | |
| CATCAGCTACTGTGAAGGAT+GGG | - | chr1.4:69347461-69347480 | MS.gene07291:CDS | 45.0% | |
| CCAGCAACCACAACCTTATT+AGG | + | chr1.4:69347349-69347368 | None:intergenic | 45.0% | |
| CCGGAAAAAGAATCACCAGA+GGG | - | chr1.4:69344604-69344623 | MS.gene07291:CDS | 45.0% | |
| CCTAATAAGGTTGTGGTTGC+TGG | - | chr1.4:69347346-69347365 | MS.gene07291:CDS | 45.0% | |
| CGTTTCAAGCACCATTGTAG+TGG | - | chr1.4:69346364-69346383 | MS.gene07291:intron | 45.0% | |
| CTAACATGGACCAAGCTACA+TGG | - | chr1.4:69345722-69345741 | MS.gene07291:intron | 45.0% | |
| CTCATCACCTGCATTGAATG+GGG | + | chr1.4:69347005-69347024 | None:intergenic | 45.0% | |
| GATGATTATGCCGATGGGTA+TGG | + | chr1.4:69344443-69344462 | None:intergenic | 45.0% | |
| GGAATTGTTTACCACCCAGA+TGG | - | chr1.4:69347193-69347212 | MS.gene07291:CDS | 45.0% | |
| TATCCCATGGTGCAAGTGAT+TGG | + | chr1.4:69345929-69345948 | None:intergenic | 45.0% | |
| TCTTCCAATACTGTTCCCTC+TGG | + | chr1.4:69344622-69344641 | None:intergenic | 45.0% | |
| TGGTTGCTGGAAATCCTTCA+GGG | - | chr1.4:69347359-69347378 | MS.gene07291:CDS | 45.0% | |
| ! | ATTGGTTCCCCATTCAATGC+AGG | - | chr1.4:69346995-69347014 | MS.gene07291:intron | 45.0% |
| ! | CCCTCTGGTGATTCTTTTTC+CGG | + | chr1.4:69344607-69344626 | None:intergenic | 45.0% |
| ! | GATGTTGCAGTTGATGCAGA+AGG | - | chr1.4:69347040-69347059 | MS.gene07291:intron | 45.0% |
| !! | ATGAAGAACGGCATCGACAA+AGG | - | chr1.4:69346044-69346063 | MS.gene07291:intron | 45.0% |
| !!! | GGGCCACTTTATTTTGGAGA+TGG | - | chr1.4:69347307-69347326 | MS.gene07291:CDS | 45.0% |
| !!! | TATATTAATAATTTTATGTT+AGG | - | chr1.4:69345310-69345329 | MS.gene07291:intron | 5.0% |
| CCAGAATCCGATTCCTACTC+CGG | + | chr1.4:69344705-69344724 | None:intergenic | 50.0% | |
| CGATTGACCGGAGTAGGAAT+CGG | - | chr1.4:69344695-69344714 | MS.gene07291:CDS | 50.0% | |
| CTCAGGGCCTAAACATCGTT+TGG | - | chr1.4:69347435-69347454 | MS.gene07291:CDS | 50.0% | |
| CTCTCCACTAATCTCCCTGA+AGG | + | chr1.4:69347376-69347395 | None:intergenic | 50.0% | |
| CTCTTCACAGCCATACCCAT+CGG | - | chr1.4:69344430-69344449 | MS.gene07291:CDS | 50.0% | |
| CTGAAAGAAACGGAGTTGGC+CGG | - | chr1.4:69344652-69344671 | MS.gene07291:CDS | 50.0% | |
| GATGCCGTTCTTCATATCGC+TGG | + | chr1.4:69346039-69346058 | None:intergenic | 50.0% | |
| GCACCAATCACTTGCACCAT+GGG | - | chr1.4:69345923-69345942 | MS.gene07291:intron | 50.0% | |
| GGCTACATCAGCTACTGTGA+AGG | - | chr1.4:69347456-69347475 | MS.gene07291:CDS | 50.0% | |
| GGCTGTGAAGAGGAAGAGAA+TGG | + | chr1.4:69344422-69344441 | None:intergenic | 50.0% | |
| GTGGTTGCTGGAAATCCTTC+AGG | - | chr1.4:69347358-69347377 | MS.gene07291:CDS | 50.0% | |
| TCACTTGCACCATGGGATAC+TGG | - | chr1.4:69345930-69345949 | MS.gene07291:intron | 50.0% | |
| TCGGACTCAACCATGTAGCT+TGG | + | chr1.4:69345735-69345754 | None:intergenic | 50.0% | |
| TGAAGAGGAAGAGAATGGCG+AGG | + | chr1.4:69344417-69344436 | None:intergenic | 50.0% | |
| TGCACCAATCACTTGCACCA+TGG | - | chr1.4:69345922-69345941 | MS.gene07291:intron | 50.0% | |
| !! | GGACCAGAGGTACTACCTAT+TGG | - | chr1.4:69346813-69346832 | MS.gene07291:intron | 50.0% |
| CATCCCCAACGACGCATTTC+CGG | + | chr1.4:69344674-69344693 | None:intergenic | 55.0% | |
| CCGGAGTAGGAATCGGATTC+TGG | - | chr1.4:69344702-69344721 | MS.gene07291:CDS | 55.0% | |
| CGATGGGTATGGCTGTGAAG+AGG | + | chr1.4:69344432-69344451 | None:intergenic | 55.0% | |
| CGTTGGGGATGACGATTGAC+CGG | - | chr1.4:69344683-69344702 | MS.gene07291:CDS | 55.0% | |
| GGATGACGATTGACCGGAGT+AGG | - | chr1.4:69344689-69344708 | MS.gene07291:CDS | 55.0% | |
| TTGGCCGGAAATGCGTCGTT+GGG | - | chr1.4:69344667-69344686 | MS.gene07291:CDS | 55.0% | |
| GTTGGCCGGAAATGCGTCGT+TGG | - | chr1.4:69344666-69344685 | MS.gene07291:CDS | 60.0% | |
| TGGCCGGAAATGCGTCGTTG+GGG | - | chr1.4:69344668-69344687 | MS.gene07291:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69344382 | 69347558 | 69344382 | ID=MS.gene07291 |
| chr1.4 | mRNA | 69344382 | 69347558 | 69344382 | ID=MS.gene07291.t1;Parent=MS.gene07291 |
| chr1.4 | exon | 69347117 | 69347558 | 69347117 | ID=MS.gene07291.t1.exon1;Parent=MS.gene07291.t1 |
| chr1.4 | CDS | 69347117 | 69347558 | 69347117 | ID=cds.MS.gene07291.t1;Parent=MS.gene07291.t1 |
| chr1.4 | exon | 69344382 | 69344923 | 69344382 | ID=MS.gene07291.t1.exon2;Parent=MS.gene07291.t1 |
| chr1.4 | CDS | 69344382 | 69344923 | 69344382 | ID=cds.MS.gene07291.t1;Parent=MS.gene07291.t1 |
| Gene Sequence |
| Protein sequence |
