Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07296.t1 | XP_003591393.1 | 98.3 | 296 | 5 | 0 | 1 | 296 | 1 | 296 | 5.10E-158 | 567 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07296.t1 | G7ICX3 | 98.3 | 296 | 5 | 0 | 1 | 296 | 1 | 296 | 3.7e-158 | 567.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052129 | MS.gene07296 | 0.817695 | 2.89E-52 | -1.69E-46 |
MS.gene058334 | MS.gene07296 | 0.805631 | 1.22E-49 | -1.69E-46 |
MS.gene061044 | MS.gene07296 | 0.824738 | 6.86E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07296.t1 | MTR_1g086950 | 98.311 | 296 | 5 | 0 | 1 | 296 | 1 | 296 | 0.0 | 591 |
MS.gene07296.t1 | MTR_7g109590 | 51.768 | 311 | 122 | 7 | 1 | 295 | 1 | 299 | 4.59e-89 | 268 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07296.t1 | AT2G47360 | 42.553 | 235 | 100 | 6 | 63 | 278 | 63 | 281 | 1.28e-50 | 169 |
MS.gene07296.t1 | AT1G02570 | 38.559 | 236 | 129 | 5 | 64 | 296 | 56 | 278 | 8.67e-44 | 150 |
MS.gene07296.t1 | AT1G02575 | 37.755 | 196 | 102 | 8 | 75 | 267 | 67 | 245 | 3.12e-31 | 118 |
Find 76 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGAGGAAGTTGAGAATTT+AGG | 0.190418 | 1.4:+69314255 | MS.gene07296:CDS |
TACATGAAACAACACAAATT+TGG | 0.272884 | 1.4:+69314109 | MS.gene07296:CDS |
TTTCAAATATGTGTTGGTTT+AGG | 0.275769 | 1.4:+69313967 | MS.gene07296:CDS |
ATAGTTGAAGAAGAAATCTT+TGG | 0.285743 | 1.4:-69313617 | None:intergenic |
ATGGATTTGAAGGTAGAATT+TGG | 0.286827 | 1.4:-69313743 | None:intergenic |
GACGATGGTTCTAGTAGTTT+TGG | 0.302357 | 1.4:+69314042 | MS.gene07296:CDS |
AGTTGAGAATTTAGGTGTTA+TGG | 0.309415 | 1.4:+69314263 | MS.gene07296:CDS |
ACAGATTAATGAGGTGGAAT+TGG | 0.353558 | 1.4:+69314437 | MS.gene07296:CDS |
TACTTTGATCAATGGTTTGA+TGG | 0.354298 | 1.4:+69313855 | MS.gene07296:CDS |
GCTAAGAGAAGAAAAGATAG+AGG | 0.357745 | 1.4:-69313706 | None:intergenic |
GTCTTTACATGTCATGGAAA+TGG | 0.358547 | 1.4:+69313929 | MS.gene07296:CDS |
GAGATTATGGATTGAGAAAG+TGG | 0.371004 | 1.4:+69314191 | MS.gene07296:CDS |
CTTCTCTTAGCTAGTCTCTC+TGG | 0.372938 | 1.4:+69313718 | MS.gene07296:CDS |
GTGGTTGTGGCAGGTAGTTT+AGG | 0.376947 | 1.4:+69314210 | MS.gene07296:CDS |
ATGACATGTAAAGACGAGTT+TGG | 0.390360 | 1.4:-69313921 | None:intergenic |
GGTATGGTGAGGATTGTTAA+AGG | 0.394274 | 1.4:+69314369 | MS.gene07296:CDS |
AAAAGAGAAAAGATAAGGTA+AGG | 0.399838 | 1.4:-69313776 | None:intergenic |
AGGAGGTGGAAGATCCTTGC+AGG | 0.405724 | 1.4:-69313655 | None:intergenic |
TATTATCTAATTGTCACAAT+TGG | 0.405785 | 1.4:+69314348 | MS.gene07296:CDS |
AAGGTAAGGGTTGTTGTGAA+TGG | 0.409710 | 1.4:-69313762 | None:intergenic |
AGTGTAGCTACTTTGATCAA+TGG | 0.424175 | 1.4:+69313847 | MS.gene07296:CDS |
AGTTTGGAGAAGAATAGAAT+TGG | 0.429200 | 1.4:-69313905 | None:intergenic |
GAAAAGATAGAGGGAGGAGA+AGG | 0.430845 | 1.4:-69313696 | None:intergenic |
AAGCAGAATGATATTTCTGT+TGG | 0.438907 | 1.4:+69314083 | MS.gene07296:CDS |
GTGGGAATAGAAGAATTTGT+TGG | 0.445922 | 1.4:+69314315 | MS.gene07296:CDS |
TGATTTCTCTATGTAGAAGA+AGG | 0.454333 | 1.4:+69314409 | MS.gene07296:CDS |
GGATTGTTAAAGGTCTTATG+TGG | 0.482472 | 1.4:+69314379 | MS.gene07296:CDS |
AATTGGATGAATCATTCATA+AGG | 0.483645 | 1.4:-69313888 | None:intergenic |
AACAAAGAAAGATGAAATGA+TGG | 0.484417 | 1.4:+69314290 | MS.gene07296:CDS |
AAAAGATAGAGGGAGGAGAA+GGG | 0.494482 | 1.4:-69313695 | None:intergenic |
GTTGTTGTGAATGGATTTGA+AGG | 0.496977 | 1.4:-69313753 | None:intergenic |
GTTTAGGAACATTGTGGTGG+TGG | 0.497414 | 1.4:+69314226 | MS.gene07296:CDS |
ATGGATTGAGAAAGTGGTTG+TGG | 0.498685 | 1.4:+69314197 | MS.gene07296:CDS |
TCATTCTACACAAAATGGAT+TGG | 0.502402 | 1.4:+69313584 | None:intergenic |
TCTAATTGTCACAATTGGTA+TGG | 0.503683 | 1.4:+69314353 | MS.gene07296:CDS |
GAAAGATGAAATGATGGAGG+TGG | 0.504281 | 1.4:+69314296 | MS.gene07296:CDS |
GGATAGTGATGGTGAGGAGG+TGG | 0.504511 | 1.4:-69313669 | None:intergenic |
ACTTTGATCAATGGTTTGAT+GGG | 0.504932 | 1.4:+69313856 | MS.gene07296:CDS |
GGGTGAGGATAGTGATGGTG+AGG | 0.507453 | 1.4:-69313675 | None:intergenic |
GTGGTGGATGACACTATATT+TGG | 0.509880 | 1.4:+69314153 | MS.gene07296:CDS |
AAAGAGAAAAGATAAGGTAA+GGG | 0.510747 | 1.4:-69313775 | None:intergenic |
AGCAGAATGATATTTCTGTT+GGG | 0.516467 | 1.4:+69314084 | MS.gene07296:CDS |
ATAGAGGGAGGAGAAGGGTG+AGG | 0.523270 | 1.4:-69313690 | None:intergenic |
TGAGGATAGTGATGGTGAGG+AGG | 0.526694 | 1.4:-69313672 | None:intergenic |
ACAAGAACATAGAGAATACA+TGG | 0.527333 | 1.4:-69313814 | None:intergenic |
TAGAAGAATTTGTTGGATGG+TGG | 0.527444 | 1.4:+69314322 | MS.gene07296:CDS |
AAACTCGTCTTTACATGTCA+TGG | 0.528069 | 1.4:+69313923 | MS.gene07296:CDS |
ATAGCAAAAGAGAAAAGATA+AGG | 0.540841 | 1.4:-69313781 | None:intergenic |
GATGACACTATATTTGGTGT+TGG | 0.542896 | 1.4:+69314159 | MS.gene07296:CDS |
ATTGAAGCAAGCATTGCAGC+TGG | 0.549729 | 1.4:+69313991 | MS.gene07296:CDS |
AAAGATGAAATGATGGAGGT+GGG | 0.557012 | 1.4:+69314297 | MS.gene07296:CDS |
CAAAGTAGCTACACTTACAA+TGG | 0.557980 | 1.4:-69313839 | None:intergenic |
ATTGAGAAAGTGGTTGTGGC+AGG | 0.560585 | 1.4:+69314201 | MS.gene07296:CDS |
GAGAAGGGTGAGGATAGTGA+TGG | 0.583678 | 1.4:-69313680 | None:intergenic |
AGAGAAGAAAAGATAGAGGG+AGG | 0.590383 | 1.4:-69313702 | None:intergenic |
TTGTCACAATTGGTATGGTG+AGG | 0.590458 | 1.4:+69314358 | MS.gene07296:CDS |
AAAGAAAGATGAAATGATGG+AGG | 0.600117 | 1.4:+69314293 | MS.gene07296:CDS |
CTAAGAGAAGAAAAGATAGA+GGG | 0.601150 | 1.4:-69313705 | None:intergenic |
TTGCTATCTACACCCCTGCA+AGG | 0.606162 | 1.4:+69313641 | MS.gene07296:CDS |
GGTAACACAGATTAATGAGG+TGG | 0.609717 | 1.4:+69314431 | MS.gene07296:CDS |
GATTTCTCTATGTAGAAGAA+GGG | 0.614319 | 1.4:+69314410 | MS.gene07296:CDS |
AATATAGTGTCATCCACCAC+TGG | 0.619508 | 1.4:-69314150 | None:intergenic |
GAATAGAAGAATTTGTTGGA+TGG | 0.624191 | 1.4:+69314319 | MS.gene07296:CDS |
GATTGTTAAAGGTCTTATGT+GGG | 0.625679 | 1.4:+69314380 | MS.gene07296:CDS |
AACATAGAGAATACATGGGG+AGG | 0.632641 | 1.4:-69313809 | None:intergenic |
AAGGGTAACACAGATTAATG+AGG | 0.632667 | 1.4:+69314428 | MS.gene07296:CDS |
GGAGGTGGAAGATCCTTGCA+GGG | 0.633817 | 1.4:-69313654 | None:intergenic |
GTGGTGGTGGAAGTTGAGAG+AGG | 0.639795 | 1.4:+69314239 | MS.gene07296:CDS |
CAAGAACATAGAGAATACAT+GGG | 0.640474 | 1.4:-69313813 | None:intergenic |
AGTTGTTGTGAGACCAGTGG+TGG | 0.655710 | 1.4:+69314137 | MS.gene07296:CDS |
GTAGTTTAGGAACATTGTGG+TGG | 0.662467 | 1.4:+69314223 | MS.gene07296:CDS |
CAGGTAGTTTAGGAACATTG+TGG | 0.681497 | 1.4:+69314220 | MS.gene07296:CDS |
GAGGTGGAAGATCCTTGCAG+GGG | 0.700426 | 1.4:-69313653 | None:intergenic |
AAGAGTTGTTGTGAGACCAG+TGG | 0.721375 | 1.4:+69314134 | MS.gene07296:CDS |
AAGAACATAGAGAATACATG+GGG | 0.725668 | 1.4:-69313812 | None:intergenic |
ACTGAGTCAGAATGATGACA+AGG | 0.757755 | 1.4:+69314461 | MS.gene07296:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTATCTAATTGTCACAAT+TGG | + | chr1.4:69314348-69314367 | MS.gene07296:CDS | 20.0% |
! | AAAAGAGAAAAGATAAGGTA+AGG | - | chr1.4:69313779-69313798 | None:intergenic | 25.0% |
! | AAAGAGAAAAGATAAGGTAA+GGG | - | chr1.4:69313778-69313797 | None:intergenic | 25.0% |
! | AACAAAGAAAGATGAAATGA+TGG | + | chr1.4:69314290-69314309 | MS.gene07296:CDS | 25.0% |
! | AATTGGATGAATCATTCATA+AGG | - | chr1.4:69313891-69313910 | None:intergenic | 25.0% |
! | ATAGCAAAAGAGAAAAGATA+AGG | - | chr1.4:69313784-69313803 | None:intergenic | 25.0% |
! | ATAGTTGAAGAAGAAATCTT+TGG | - | chr1.4:69313620-69313639 | None:intergenic | 25.0% |
! | TACATGAAACAACACAAATT+TGG | + | chr1.4:69314109-69314128 | MS.gene07296:CDS | 25.0% |
!!! | TTCACTTTTCAAATATGTGT+TGG | + | chr1.4:69313961-69313980 | MS.gene07296:CDS | 25.0% |
!!! | TTTCAAATATGTGTTGGTTT+AGG | + | chr1.4:69313967-69313986 | MS.gene07296:CDS | 25.0% |
AAAGAAAGATGAAATGATGG+AGG | + | chr1.4:69314293-69314312 | MS.gene07296:CDS | 30.0% | |
AAGAACATAGAGAATACATG+GGG | - | chr1.4:69313815-69313834 | None:intergenic | 30.0% | |
ACAAGAACATAGAGAATACA+TGG | - | chr1.4:69313817-69313836 | None:intergenic | 30.0% | |
ACTTTGATCAATGGTTTGAT+GGG | + | chr1.4:69313856-69313875 | MS.gene07296:CDS | 30.0% | |
AGTTGAGAATTTAGGTGTTA+TGG | + | chr1.4:69314263-69314282 | MS.gene07296:CDS | 30.0% | |
AGTTTGGAGAAGAATAGAAT+TGG | - | chr1.4:69313908-69313927 | None:intergenic | 30.0% | |
ATGGATTTGAAGGTAGAATT+TGG | - | chr1.4:69313746-69313765 | None:intergenic | 30.0% | |
CAAGAACATAGAGAATACAT+GGG | - | chr1.4:69313816-69313835 | None:intergenic | 30.0% | |
CTAAGAGAAGAAAAGATAGA+GGG | - | chr1.4:69313708-69313727 | None:intergenic | 30.0% | |
GATTTCTCTATGTAGAAGAA+GGG | + | chr1.4:69314410-69314429 | MS.gene07296:CDS | 30.0% | |
TACTTTGATCAATGGTTTGA+TGG | + | chr1.4:69313855-69313874 | MS.gene07296:CDS | 30.0% | |
TCTAATTGTCACAATTGGTA+TGG | + | chr1.4:69314353-69314372 | MS.gene07296:CDS | 30.0% | |
TGATTTCTCTATGTAGAAGA+AGG | + | chr1.4:69314409-69314428 | MS.gene07296:CDS | 30.0% | |
TTGGAAAAAGAGAGAGATTA+TGG | + | chr1.4:69314178-69314197 | MS.gene07296:CDS | 30.0% | |
! | AAGCAGAATGATATTTCTGT+TGG | + | chr1.4:69314083-69314102 | MS.gene07296:CDS | 30.0% |
! | AGCAGAATGATATTTCTGTT+GGG | + | chr1.4:69314084-69314103 | MS.gene07296:CDS | 30.0% |
! | GATTGTTAAAGGTCTTATGT+GGG | + | chr1.4:69314380-69314399 | MS.gene07296:CDS | 30.0% |
!! | GAATAGAAGAATTTGTTGGA+TGG | + | chr1.4:69314319-69314338 | MS.gene07296:CDS | 30.0% |
AAACTCGTCTTTACATGTCA+TGG | + | chr1.4:69313923-69313942 | MS.gene07296:CDS | 35.0% | |
AAGGGTAACACAGATTAATG+AGG | + | chr1.4:69314428-69314447 | MS.gene07296:CDS | 35.0% | |
ACAGATTAATGAGGTGGAAT+TGG | + | chr1.4:69314437-69314456 | MS.gene07296:CDS | 35.0% | |
AGAGAGGAAGTTGAGAATTT+AGG | + | chr1.4:69314255-69314274 | MS.gene07296:CDS | 35.0% | |
ATCGTCAAAAACATCGTTGT+CGG | - | chr1.4:69314028-69314047 | None:intergenic | 35.0% | |
ATGACATGTAAAGACGAGTT+TGG | - | chr1.4:69313924-69313943 | None:intergenic | 35.0% | |
CAAAGTAGCTACACTTACAA+TGG | - | chr1.4:69313842-69313861 | None:intergenic | 35.0% | |
GCTAAGAGAAGAAAAGATAG+AGG | - | chr1.4:69313709-69313728 | None:intergenic | 35.0% | |
GTCTTTACATGTCATGGAAA+TGG | + | chr1.4:69313929-69313948 | MS.gene07296:CDS | 35.0% | |
GTGGGAATAGAAGAATTTGT+TGG | + | chr1.4:69314315-69314334 | MS.gene07296:CDS | 35.0% | |
! | AAAGATGAAATGATGGAGGT+GGG | + | chr1.4:69314297-69314316 | MS.gene07296:CDS | 35.0% |
! | AGTGTAGCTACTTTGATCAA+TGG | + | chr1.4:69313847-69313866 | MS.gene07296:CDS | 35.0% |
! | GAGATTATGGATTGAGAAAG+TGG | + | chr1.4:69314191-69314210 | MS.gene07296:CDS | 35.0% |
! | GGATTGTTAAAGGTCTTATG+TGG | + | chr1.4:69314379-69314398 | MS.gene07296:CDS | 35.0% |
! | GTTGTTGTGAATGGATTTGA+AGG | - | chr1.4:69313756-69313775 | None:intergenic | 35.0% |
!! | GATGACACTATATTTGGTGT+TGG | + | chr1.4:69314159-69314178 | MS.gene07296:CDS | 35.0% |
!! | TAGAAGAATTTGTTGGATGG+TGG | + | chr1.4:69314322-69314341 | MS.gene07296:CDS | 35.0% |
AAAAGATAGAGGGAGGAGAA+GGG | - | chr1.4:69313698-69313717 | None:intergenic | 40.0% | |
AACATAGAGAATACATGGGG+AGG | - | chr1.4:69313812-69313831 | None:intergenic | 40.0% | |
AAGGTAAGGGTTGTTGTGAA+TGG | - | chr1.4:69313765-69313784 | None:intergenic | 40.0% | |
AATATAGTGTCATCCACCAC+TGG | - | chr1.4:69314153-69314172 | None:intergenic | 40.0% | |
ACTGAGTCAGAATGATGACA+AGG | + | chr1.4:69314461-69314480 | MS.gene07296:CDS | 40.0% | |
AGAGAAGAAAAGATAGAGGG+AGG | - | chr1.4:69313705-69313724 | None:intergenic | 40.0% | |
CAGGTAGTTTAGGAACATTG+TGG | + | chr1.4:69314220-69314239 | MS.gene07296:CDS | 40.0% | |
GGTAACACAGATTAATGAGG+TGG | + | chr1.4:69314431-69314450 | MS.gene07296:CDS | 40.0% | |
GGTATGGTGAGGATTGTTAA+AGG | + | chr1.4:69314369-69314388 | MS.gene07296:CDS | 40.0% | |
GTAGTTTAGGAACATTGTGG+TGG | + | chr1.4:69314223-69314242 | MS.gene07296:CDS | 40.0% | |
TTGTCACAATTGGTATGGTG+AGG | + | chr1.4:69314358-69314377 | MS.gene07296:CDS | 40.0% | |
! | ATGGATTGAGAAAGTGGTTG+TGG | + | chr1.4:69314197-69314216 | MS.gene07296:CDS | 40.0% |
! | GAAAGATGAAATGATGGAGG+TGG | + | chr1.4:69314296-69314315 | MS.gene07296:CDS | 40.0% |
!! | GACAACGATGTTTTTGACGA+TGG | + | chr1.4:69314027-69314046 | MS.gene07296:CDS | 40.0% |
!! | GTGGTGGATGACACTATATT+TGG | + | chr1.4:69314153-69314172 | MS.gene07296:CDS | 40.0% |
!!! | GACGATGGTTCTAGTAGTTT+TGG | + | chr1.4:69314042-69314061 | MS.gene07296:CDS | 40.0% |
AAGAGTTGTTGTGAGACCAG+TGG | + | chr1.4:69314134-69314153 | MS.gene07296:CDS | 45.0% | |
ATTGAGAAAGTGGTTGTGGC+AGG | + | chr1.4:69314201-69314220 | MS.gene07296:CDS | 45.0% | |
GAAAAGATAGAGGGAGGAGA+AGG | - | chr1.4:69313699-69313718 | None:intergenic | 45.0% | |
GTTTAGGAACATTGTGGTGG+TGG | + | chr1.4:69314226-69314245 | MS.gene07296:CDS | 45.0% | |
! | ATTGAAGCAAGCATTGCAGC+TGG | + | chr1.4:69313991-69314010 | MS.gene07296:CDS | 45.0% |
! | CTTCTCTTAGCTAGTCTCTC+TGG | + | chr1.4:69313718-69313737 | MS.gene07296:CDS | 45.0% |
AGTTGTTGTGAGACCAGTGG+TGG | + | chr1.4:69314137-69314156 | MS.gene07296:CDS | 50.0% | |
GAGAAGGGTGAGGATAGTGA+TGG | - | chr1.4:69313683-69313702 | None:intergenic | 50.0% | |
GTGGTTGTGGCAGGTAGTTT+AGG | + | chr1.4:69314210-69314229 | MS.gene07296:CDS | 50.0% | |
TTGCTATCTACACCCCTGCA+AGG | + | chr1.4:69313641-69313660 | MS.gene07296:CDS | 50.0% | |
! | TGAGGATAGTGATGGTGAGG+AGG | - | chr1.4:69313675-69313694 | None:intergenic | 50.0% |
AGGAGGTGGAAGATCCTTGC+AGG | - | chr1.4:69313658-69313677 | None:intergenic | 55.0% | |
ATAGAGGGAGGAGAAGGGTG+AGG | - | chr1.4:69313693-69313712 | None:intergenic | 55.0% | |
GAGGTGGAAGATCCTTGCAG+GGG | - | chr1.4:69313656-69313675 | None:intergenic | 55.0% | |
GGAGGTGGAAGATCCTTGCA+GGG | - | chr1.4:69313657-69313676 | None:intergenic | 55.0% | |
! | GGATAGTGATGGTGAGGAGG+TGG | - | chr1.4:69313672-69313691 | None:intergenic | 55.0% |
! | GGGTGAGGATAGTGATGGTG+AGG | - | chr1.4:69313678-69313697 | None:intergenic | 55.0% |
!! | GTGGTGGTGGAAGTTGAGAG+AGG | + | chr1.4:69314239-69314258 | MS.gene07296:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 69313598 | 69314488 | 69313598 | ID=MS.gene07296 |
chr1.4 | mRNA | 69313598 | 69314488 | 69313598 | ID=MS.gene07296.t1;Parent=MS.gene07296 |
chr1.4 | exon | 69313598 | 69314488 | 69313598 | ID=MS.gene07296.t1.exon1;Parent=MS.gene07296.t1 |
chr1.4 | CDS | 69313598 | 69314488 | 69313598 | ID=cds.MS.gene07296.t1;Parent=MS.gene07296.t1 |
Gene Sequence |
Protein sequence |