Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073024.t1 | XP_003603557.1 | 99.7 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 4.00E-164 | 587.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073024.t1 | Q94B65 | 81.5 | 324 | 59 | 1 | 1 | 324 | 1 | 323 | 1.2e-135 | 484.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073024.t1 | G7J2T9 | 99.7 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 2.9e-164 | 587.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene073024 | MS.gene032018 | PPI |
MS.gene073024 | MS.gene69267 | PPI |
MS.gene073024 | MS.gene008096 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073024.t1 | MTR_3g109070 | 99.691 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 0.0 | 645 |
MS.gene073024.t1 | MTR_3g109070 | 99.630 | 270 | 1 | 0 | 1 | 270 | 1 | 270 | 0.0 | 531 |
MS.gene073024.t1 | MTR_3g109070 | 99.550 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 3.94e-158 | 442 |
MS.gene073024.t1 | MTR_2g085160 | 27.835 | 291 | 191 | 4 | 33 | 306 | 40 | 328 | 4.13e-25 | 103 |
MS.gene073024.t1 | MTR_2g085160 | 28.511 | 235 | 166 | 1 | 72 | 306 | 37 | 269 | 7.75e-24 | 99.0 |
MS.gene073024.t1 | MTR_5g091610 | 86.000 | 50 | 7 | 0 | 222 | 271 | 192 | 241 | 1.27e-18 | 84.3 |
MS.gene073024.t1 | MTR_1g012590 | 28.696 | 230 | 147 | 4 | 18 | 232 | 41 | 268 | 6.30e-18 | 82.8 |
MS.gene073024.t1 | MTR_1g012590 | 28.507 | 221 | 137 | 4 | 18 | 217 | 41 | 261 | 2.24e-17 | 80.9 |
MS.gene073024.t1 | MTR_3g463360 | 24.904 | 261 | 185 | 4 | 16 | 267 | 103 | 361 | 2.04e-15 | 76.6 |
MS.gene073024.t1 | MTR_4g113270 | 28.077 | 260 | 163 | 7 | 20 | 265 | 18 | 267 | 3.88e-13 | 69.7 |
MS.gene073024.t1 | MTR_4g113270 | 28.077 | 260 | 163 | 7 | 20 | 265 | 18 | 267 | 4.58e-13 | 69.3 |
MS.gene073024.t1 | MTR_2g094640 | 23.077 | 312 | 224 | 8 | 7 | 311 | 2 | 304 | 1.60e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073024.t1 | AT4G31600 | 81.481 | 324 | 59 | 1 | 1 | 324 | 1 | 323 | 0.0 | 536 |
MS.gene073024.t1 | AT4G31600 | 80.531 | 226 | 43 | 1 | 1 | 226 | 1 | 225 | 1.00e-126 | 365 |
MS.gene073024.t1 | AT2G14695 | 28.840 | 319 | 208 | 6 | 4 | 306 | 29 | 344 | 2.64e-33 | 125 |
MS.gene073024.t1 | AT4G32272 | 30.565 | 301 | 193 | 6 | 18 | 304 | 42 | 340 | 3.32e-33 | 125 |
MS.gene073024.t1 | AT4G32272 | 30.272 | 294 | 189 | 6 | 25 | 304 | 64 | 355 | 2.07e-31 | 121 |
MS.gene073024.t1 | AT5G19980 | 25.740 | 338 | 213 | 11 | 4 | 323 | 5 | 322 | 6.06e-12 | 66.2 |
Find 74 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACCTTTGGTTTCTTCTTAC+TGG | 0.055823 | 3.4:-94390128 | MS.gene073024:CDS |
AATAATACAGATAAAGAATA+TGG | 0.225037 | 3.4:+94391409 | None:intergenic |
ACGATTGTGGGTGTTCTTAA+AGG | 0.250800 | 3.4:-94390325 | MS.gene073024:CDS |
AATGACTCTCCTCACTTTGC+AGG | 0.263355 | 3.4:-94393134 | MS.gene073024:intron |
AAGCGGTGTAAGCCTCTTTA+TGG | 0.268525 | 3.4:+94392441 | None:intergenic |
TTATTGTTTCTTCAGACCTT+TGG | 0.300445 | 3.4:-94390142 | MS.gene073024:intron |
CCATCACCAACGAAAGAATA+AGG | 0.367155 | 3.4:+94390407 | None:intergenic |
AAGAGCAAGAGGGGTAGATT+TGG | 0.380015 | 3.4:-94392563 | MS.gene073024:CDS |
TGCCAATGTCGCATTTGCTT+TGG | 0.382847 | 3.4:-94392500 | MS.gene073024:CDS |
CCTTATTCTTTCGTTGGTGA+TGG | 0.391406 | 3.4:-94390407 | MS.gene073024:CDS |
ACCTTTGGTTTCTTCTTACT+GGG | 0.392493 | 3.4:-94390127 | MS.gene073024:CDS |
ACTTATCGCTGGATGTTTCA+TGG | 0.394022 | 3.4:-94392413 | MS.gene073024:CDS |
GAAACCATTACCTGAGTTGT+AGG | 0.403057 | 3.4:+94392379 | None:intergenic |
GATATTGACTCCTTTCAAAC+TGG | 0.405917 | 3.4:+94392477 | None:intergenic |
TTAATTGCGGCAGTGTCATA+TGG | 0.413226 | 3.4:-94393217 | MS.gene073024:CDS |
AAGCCATGCTATACCCAAAA+AGG | 0.414547 | 3.4:+94391682 | None:intergenic |
GCTTTAACTACAACGATTGT+GGG | 0.428116 | 3.4:-94390337 | MS.gene073024:CDS |
GTGGGTGTTCTTAAAGGAGT+TGG | 0.428224 | 3.4:-94390319 | MS.gene073024:CDS |
GGTGATCCTTATTCTTTCGT+TGG | 0.439674 | 3.4:-94390413 | MS.gene073024:CDS |
CTCTTTATGGCAATATACAT+TGG | 0.440204 | 3.4:+94392454 | None:intergenic |
CGCTGGATGTTTCATGGGGA+AGG | 0.447004 | 3.4:-94392407 | MS.gene073024:CDS |
TGCTTTAACTACAACGATTG+TGG | 0.452237 | 3.4:-94390338 | MS.gene073024:CDS |
TCTTTATGGCAATATACATT+GGG | 0.457891 | 3.4:+94392455 | None:intergenic |
CTTATTCTTTCGTTGGTGAT+GGG | 0.460235 | 3.4:-94390406 | MS.gene073024:CDS |
ATGTTTCTTATTATAGCCAC+AGG | 0.466137 | 3.4:-94391439 | MS.gene073024:CDS |
TCAGTGATATTGACTGCTGC+TGG | 0.467406 | 3.4:-94391741 | MS.gene073024:CDS |
CTTATCGCTGGATGTTTCAT+GGG | 0.470441 | 3.4:-94392412 | MS.gene073024:CDS |
AACGGCCAAGCAACTGCTCC+CGG | 0.482646 | 3.4:-94392539 | MS.gene073024:CDS |
GTCATATGGAATTGCTTCAA+TGG | 0.483225 | 3.4:-94393203 | MS.gene073024:CDS |
TTCCACCAGCACAAGGTACA+TGG | 0.486766 | 3.4:+94391537 | None:intergenic |
ACCACCTTGCTTATACACTT+TGG | 0.489142 | 3.4:-94392604 | MS.gene073024:CDS |
GAAGGGGAGACCTACAACTC+AGG | 0.497232 | 3.4:-94392389 | MS.gene073024:intron |
CTGGATGTTTCATGGGGAAG+GGG | 0.498074 | 3.4:-94392405 | MS.gene073024:CDS |
GTCCATGCTTTGAATGTGAC+TGG | 0.500341 | 3.4:-94390094 | MS.gene073024:CDS |
TGGAATTGCTTCAATGGCAA+TGG | 0.506448 | 3.4:-94393197 | MS.gene073024:CDS |
ATAATACAGATAAAGAATAT+GGG | 0.509077 | 3.4:+94391410 | None:intergenic |
CCGCTTGCTGTACTTATCGC+TGG | 0.512463 | 3.4:-94392424 | MS.gene073024:CDS |
AAGTAGATTCTGCATCGGTT+CGG | 0.516441 | 3.4:+94393337 | None:intergenic |
TTTGCTTTGGCCAGTTTGAA+AGG | 0.517782 | 3.4:-94392487 | MS.gene073024:CDS |
GCAGACCATGTACCTTGTGC+TGG | 0.517953 | 3.4:-94391542 | MS.gene073024:intron |
GGAGTTCTCATAGCAGCCCT+TGG | 0.520280 | 3.4:-94391720 | MS.gene073024:CDS |
TGAAACCGGGAGCAGTTGCT+TGG | 0.523462 | 3.4:+94392534 | None:intergenic |
GGCCAAAGCAAATGCGACAT+TGG | 0.528052 | 3.4:+94392498 | None:intergenic |
CAATGTATATTGCCATAAAG+AGG | 0.533866 | 3.4:-94392453 | MS.gene073024:CDS |
TTTATCTGTATTATTTGCAA+AGG | 0.536255 | 3.4:-94391401 | MS.gene073024:intron |
GCTGGATGTTTCATGGGGAA+GGG | 0.557636 | 3.4:-94392406 | MS.gene073024:CDS |
TGCTTTGAATGTGACTGGAT+TGG | 0.558503 | 3.4:-94390089 | MS.gene073024:CDS |
TCGACCAAAGTGTATAAGCA+AGG | 0.561117 | 3.4:+94392600 | None:intergenic |
GGATTGGTCATCAATACAGC+TGG | 0.566974 | 3.4:-94390073 | MS.gene073024:CDS |
AACAATAGTGCACAAGAACA+TGG | 0.587407 | 3.4:+94390366 | None:intergenic |
ATCCAGTCACATTCAAAGCA+TGG | 0.590853 | 3.4:+94390092 | None:intergenic |
TTTGGTTTCTTCTTACTGGG+TGG | 0.593368 | 3.4:-94390124 | MS.gene073024:CDS |
ATGGGATACACAAGAGCAAG+AGG | 0.593687 | 3.4:-94392574 | MS.gene073024:CDS |
GACCATGTACCTTGTGCTGG+TGG | 0.597252 | 3.4:-94391539 | MS.gene073024:CDS |
ATGTTGATGCAGTTTAATTG+CGG | 0.617199 | 3.4:-94393230 | MS.gene073024:intron |
AGTGAAGGTAGTTACAGATG+TGG | 0.618611 | 3.4:-94390002 | MS.gene073024:CDS |
GAAGGTAGTTACAGATGTGG+AGG | 0.621484 | 3.4:-94389999 | MS.gene073024:CDS |
TCTTAAAGGAGTTGGTTCCA+CGG | 0.622906 | 3.4:-94390311 | MS.gene073024:intron |
TGTTTCTTATTATAGCCACA+GGG | 0.625509 | 3.4:-94391438 | MS.gene073024:CDS |
AAATGAAGTAGATTCTGCAT+CGG | 0.629797 | 3.4:+94393332 | None:intergenic |
GGGATACACAAGAGCAAGAG+GGG | 0.631770 | 3.4:-94392572 | MS.gene073024:CDS |
GCAAACAAACCTGCAAAGTG+AGG | 0.632689 | 3.4:+94393125 | None:intergenic |
TGGGATACACAAGAGCAAGA+GGG | 0.636053 | 3.4:-94392573 | MS.gene073024:CDS |
TCAATACAGCTGGTGGTGTG+TGG | 0.641527 | 3.4:-94390063 | MS.gene073024:CDS |
TTATCGCTGGATGTTTCATG+GGG | 0.645128 | 3.4:-94392411 | MS.gene073024:CDS |
TGCATCGGTTCGGATCTCCA+TGG | 0.657034 | 3.4:+94393347 | None:intergenic |
AAGAGGGGTAGATTTGGCAA+CGG | 0.660709 | 3.4:-94392557 | MS.gene073024:CDS |
CCAGCGATAAGTACAGCAAG+CGG | 0.663001 | 3.4:+94392424 | None:intergenic |
GTTTCTTATTATAGCCACAG+GGG | 0.683514 | 3.4:-94391437 | MS.gene073024:CDS |
TTGGTCATCAATACAGCTGG+TGG | 0.688538 | 3.4:-94390070 | MS.gene073024:CDS |
TGAGAATGGACTTTCATCAG+TGG | 0.688876 | 3.4:-94391503 | MS.gene073024:CDS |
ACCAAAGTGTATAAGCAAGG+TGG | 0.697760 | 3.4:+94392603 | None:intergenic |
ACCCAGTAAGAAGAAACCAA+AGG | 0.700359 | 3.4:+94390126 | None:intergenic |
AGAATATGGGAATTCCCCTG+TGG | 0.758937 | 3.4:+94391423 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTTTTTTTTTA+GGG | - | chr3.4:94390403-94390422 | MS.gene073024:CDS | 0.0% |
!!! | TTTTTTTTTTTTTTTTTTTT+AGG | - | chr3.4:94390398-94390417 | MS.gene073024:CDS | 0.0% |
!! | AATAATACAGATAAAGAATA+TGG | + | chr3.4:94391924-94391943 | None:intergenic | 15.0% |
!! | ATAATAAGAAACATCAAAAA+CGG | + | chr3.4:94391885-94391904 | None:intergenic | 15.0% |
!! | ATAATACAGATAAAGAATAT+GGG | + | chr3.4:94391923-94391942 | None:intergenic | 15.0% |
!! | ATTATACAATATAGACAAAT+AGG | + | chr3.4:94392576-94392595 | None:intergenic | 15.0% |
!! | TTTAAGTAGGTTTAAATTAA+GGG | - | chr3.4:94390638-94390657 | MS.gene073024:intron | 15.0% |
!!! | CAGAAAAAAGTATATATATT+TGG | - | chr3.4:94390534-94390553 | MS.gene073024:intron | 15.0% |
!!! | CTTTTTTCTGATTATATTTA+AGG | + | chr3.4:94390524-94390543 | None:intergenic | 15.0% |
!!! | TTATTTTGAGTGAAAAAAAT+AGG | + | chr3.4:94392336-94392355 | None:intergenic | 15.0% |
!!! | TTTGATTTTTTTGTTTAAGT+AGG | - | chr3.4:94390625-94390644 | MS.gene073024:intron | 15.0% |
!! | AAATACAAACAAAAGATGAA+TGG | + | chr3.4:94393119-94393138 | None:intergenic | 20.0% |
!! | AAATGTAATGTTTGTTTGAT+TGG | - | chr3.4:94391304-94391323 | MS.gene073024:intron | 20.0% |
!! | AATCTTGTTGAAAGAAAAAT+AGG | - | chr3.4:94392436-94392455 | MS.gene073024:CDS | 20.0% |
!! | AATGTAATGTTTGTTTGATT+GGG | - | chr3.4:94391305-94391324 | MS.gene073024:intron | 20.0% |
!! | ATCTTGTTGAAAGAAAAATA+GGG | - | chr3.4:94392437-94392456 | MS.gene073024:CDS | 20.0% |
!! | GTTTAAGTAGGTTTAAATTA+AGG | - | chr3.4:94390637-94390656 | MS.gene073024:intron | 20.0% |
!! | TTTATCTGTATTATTTGCAA+AGG | - | chr3.4:94391929-94391948 | MS.gene073024:intron | 20.0% |
!!! | ATTTTGATCTACTTACTATT+AGG | - | chr3.4:94392161-94392180 | MS.gene073024:intron | 20.0% |
!!! | CTTTTATCTTAATGAATTTC+TGG | - | chr3.4:94391422-94391441 | MS.gene073024:CDS | 20.0% |
!!! | TAAATATAAGCATTTTGGAA+AGG | + | chr3.4:94390460-94390479 | None:intergenic | 20.0% |
!!! | TACAGTTGTATTTATTTTGT+GGG | - | chr3.4:94391477-94391496 | MS.gene073024:CDS | 20.0% |
!!! | TCAGTTCTAAATTATATCAT+TGG | - | chr3.4:94392652-94392671 | MS.gene073024:intron | 20.0% |
!!! | TTTCTGATTATATTTAAGGT+AGG | + | chr3.4:94390520-94390539 | None:intergenic | 20.0% |
!!! | TTTTTTGTTTGTTAATGTCA+AGG | - | chr3.4:94390988-94391007 | MS.gene073024:intron | 20.0% |
! | AAAATCTCTTGATTAAACTG+TGG | - | chr3.4:94391060-94391079 | MS.gene073024:intron | 25.0% |
! | AAGCACAAAACATTTAGTAT+TGG | + | chr3.4:94392193-94392212 | None:intergenic | 25.0% |
! | AGAACCTAATATTGATACAT+AGG | - | chr3.4:94393087-94393106 | MS.gene073024:intron | 25.0% |
! | AGCACAAAACATTTAGTATT+GGG | + | chr3.4:94392192-94392211 | None:intergenic | 25.0% |
! | AGTGTAAACTCTACTAAAAT+TGG | + | chr3.4:94391525-94391544 | None:intergenic | 25.0% |
! | ATGTAAGTGTAAACATGATT+TGG | + | chr3.4:94390561-94390580 | None:intergenic | 25.0% |
! | CATTATAGAAAAATGAAACC+GGG | + | chr3.4:94390812-94390831 | None:intergenic | 25.0% |
! | GCATTATAGAAAAATGAAAC+CGG | + | chr3.4:94390813-94390832 | None:intergenic | 25.0% |
! | GGAAAAACAGACTTATATTT+AGG | - | chr3.4:94390424-94390443 | MS.gene073024:CDS | 25.0% |
! | GTATCTATTACTCCATTTAA+AGG | + | chr3.4:94391724-94391743 | None:intergenic | 25.0% |
! | TATGCCTATGTATCAATATT+AGG | + | chr3.4:94393094-94393113 | None:intergenic | 25.0% |
! | TCTTTATGGCAATATACATT+GGG | + | chr3.4:94390878-94390897 | None:intergenic | 25.0% |
! | TTACTCCATTTAAAGGATTA+TGG | + | chr3.4:94391717-94391736 | None:intergenic | 25.0% |
! | TTGAAACATTATTCCCAAAA+TGG | - | chr3.4:94391226-94391245 | MS.gene073024:intron | 25.0% |
! | TTGAAAGAAAAATAGGGAAA+GGG | - | chr3.4:94392443-94392462 | MS.gene073024:CDS | 25.0% |
! | TTGAATGAAGAAAGAATTGA+AGG | + | chr3.4:94390040-94390059 | None:intergenic | 25.0% |
!! | AATCTACTTCATTTTCTTCA+AGG | - | chr3.4:94390007-94390026 | MS.gene073024:CDS | 25.0% |
!! | ATTTTTCCTTTGACCTTTTT+GGG | - | chr3.4:94391635-94391654 | MS.gene073024:intron | 25.0% |
!! | CAATTTTCAGAATCCATTTT+GGG | + | chr3.4:94391242-94391261 | None:intergenic | 25.0% |
!! | TACTTTTCATGCTTATGTTT+AGG | - | chr3.4:94390582-94390601 | MS.gene073024:intron | 25.0% |
!! | TCAATTTTCAGAATCCATTT+TGG | + | chr3.4:94391243-94391262 | None:intergenic | 25.0% |
!! | TTAATTTTGCCATGATAAGA+CGG | - | chr3.4:94392529-94392548 | MS.gene073024:CDS | 25.0% |
!! | TTGTATAAACTTTGTTGTGA+TGG | - | chr3.4:94392710-94392729 | MS.gene073024:intron | 25.0% |
!!! | ACAGTTGTATTTATTTTGTG+GGG | - | chr3.4:94391478-94391497 | MS.gene073024:CDS | 25.0% |
!!! | CTACAGTTGTATTTATTTTG+TGG | - | chr3.4:94391476-94391495 | MS.gene073024:CDS | 25.0% |
!!! | GAGTTATTCTTTTTCATTTC+TGG | - | chr3.4:94392896-94392915 | MS.gene073024:intron | 25.0% |
!!! | TTTTGAGTGAAAAAAATAGG+TGG | + | chr3.4:94392333-94392352 | None:intergenic | 25.0% |
AAAGAAACTGCTAAAAGTCT+TGG | - | chr3.4:94392128-94392147 | MS.gene073024:intron | 30.0% | |
AAATGAAGTAGATTCTGCAT+CGG | + | chr3.4:94390001-94390020 | None:intergenic | 30.0% | |
AAATGCCAACATTCAAAACA+TGG | + | chr3.4:94392001-94392020 | None:intergenic | 30.0% | |
AAATGCTTATATTTACGAGC+AGG | - | chr3.4:94390465-94390484 | MS.gene073024:intron | 30.0% | |
AATGCTTATATTTACGAGCA+GGG | - | chr3.4:94390466-94390485 | MS.gene073024:intron | 30.0% | |
ACAAATAGGTGTTCAATTAC+TGG | + | chr3.4:94392562-94392581 | None:intergenic | 30.0% | |
AGAAGAATAAGAAGAACCAT+TGG | - | chr3.4:94391138-94391157 | MS.gene073024:intron | 30.0% | |
ATAAGAAGAACCATTGGTAA+CGG | - | chr3.4:94391144-94391163 | MS.gene073024:intron | 30.0% | |
ATACACTTTGGTCGAAAAAT+GGG | - | chr3.4:94390738-94390757 | MS.gene073024:intron | 30.0% | |
ATGTTGATGCAGTTTAATTG+CGG | - | chr3.4:94390100-94390119 | MS.gene073024:CDS | 30.0% | |
ATGTTTCTTATTATAGCCAC+AGG | - | chr3.4:94391891-94391910 | MS.gene073024:intron | 30.0% | |
CAATGTATATTGCCATAAAG+AGG | - | chr3.4:94390877-94390896 | MS.gene073024:intron | 30.0% | |
CTCTTTATGGCAATATACAT+TGG | + | chr3.4:94390879-94390898 | None:intergenic | 30.0% | |
CTTGGTTAATGTTATGAAGA+GGG | - | chr3.4:94391169-94391188 | MS.gene073024:intron | 30.0% | |
GAAAAAAAGTAAGACAGTGA+AGG | - | chr3.4:94393313-94393332 | MS.gene073024:intron | 30.0% | |
GAGTTTACACTCAATAGAAA+TGG | - | chr3.4:94391534-94391553 | MS.gene073024:CDS | 30.0% | |
GCACAAAACATTTAGTATTG+GGG | + | chr3.4:94392191-94392210 | None:intergenic | 30.0% | |
GTTGAAAGAAAAATAGGGAA+AGG | - | chr3.4:94392442-94392461 | MS.gene073024:CDS | 30.0% | |
GTTGTCCATAATCCTTTAAA+TGG | - | chr3.4:94391709-94391728 | MS.gene073024:CDS | 30.0% | |
TATACACTTTGGTCGAAAAA+TGG | - | chr3.4:94390737-94390756 | MS.gene073024:intron | 30.0% | |
TCTAGTGACAGAAAATTCTA+TGG | + | chr3.4:94393070-94393089 | None:intergenic | 30.0% | |
TGTTTCTTATTATAGCCACA+GGG | - | chr3.4:94391892-94391911 | MS.gene073024:intron | 30.0% | |
TTCTGGTAGAATAGACATTA+TGG | - | chr3.4:94391439-94391458 | MS.gene073024:CDS | 30.0% | |
! | AATTTAAGTTTGTGGGAACT+CGG | - | chr3.4:94392395-94392414 | MS.gene073024:CDS | 30.0% |
! | CGTTCATAAACTAGCTTAAA+AGG | + | chr3.4:94391031-94391050 | None:intergenic | 30.0% |
! | CTGATTATATTTAAGGTAGG+AGG | + | chr3.4:94390517-94390536 | None:intergenic | 30.0% |
! | GATTTTTCCTTTGACCTTTT+TGG | - | chr3.4:94391634-94391653 | MS.gene073024:intron | 30.0% |
! | GCTCGTAAATATAAGCATTT+TGG | + | chr3.4:94390465-94390484 | None:intergenic | 30.0% |
! | GGATTCTGAAAATTGAAGAA+GGG | - | chr3.4:94391247-94391266 | MS.gene073024:intron | 30.0% |
! | TAATTTTGCCATGATAAGAC+GGG | - | chr3.4:94392530-94392549 | MS.gene073024:CDS | 30.0% |
! | TCATAAACTAGCTTAAAAGG+TGG | + | chr3.4:94391028-94391047 | None:intergenic | 30.0% |
! | TGGAGAGAATTTAAGTTTGT+GGG | - | chr3.4:94392388-94392407 | MS.gene073024:intron | 30.0% |
! | TGGATTCTGAAAATTGAAGA+AGG | - | chr3.4:94391246-94391265 | MS.gene073024:intron | 30.0% |
! | TTATTGTTTCTTCAGACCTT+TGG | - | chr3.4:94393188-94393207 | MS.gene073024:CDS | 30.0% |
! | TTGGAGAGAATTTAAGTTTG+TGG | - | chr3.4:94392387-94392406 | MS.gene073024:intron | 30.0% |
! | TTTCATTTCTGTTTTCTTCC+AGG | - | chr3.4:94391669-94391688 | MS.gene073024:CDS | 30.0% |
!!! | ATTTTTTGTCAGCTTAAGAG+AGG | + | chr3.4:94391374-94391393 | None:intergenic | 30.0% |
!!! | CAGTTGTATTTATTTTGTGG+GGG | - | chr3.4:94391479-94391498 | MS.gene073024:CDS | 30.0% |
!!! | TTTTTTGTCAGCTTAAGAGA+GGG | + | chr3.4:94391373-94391392 | None:intergenic | 30.0% |
AAAATAACACCTACCTGTTG+AGG | - | chr3.4:94392349-94392368 | MS.gene073024:intron | 35.0% | |
AACAATAGTGCACAAGAACA+TGG | + | chr3.4:94392967-94392986 | None:intergenic | 35.0% | |
CAAAATATCAGCATATCACC+TGG | + | chr3.4:94391690-94391709 | None:intergenic | 35.0% | |
CTGTTCACTGCTGTAATATA+AGG | + | chr3.4:94391279-94391298 | None:intergenic | 35.0% | |
GAAAAAGAATAACTCTGCGA+AGG | + | chr3.4:94392891-94392910 | None:intergenic | 35.0% | |
GAAAATTCTATGGCAAACAC+AGG | + | chr3.4:94393060-94393079 | None:intergenic | 35.0% | |
GCTTGGTTAATGTTATGAAG+AGG | - | chr3.4:94391168-94391187 | MS.gene073024:intron | 35.0% | |
GCTTTAACTACAACGATTGT+GGG | - | chr3.4:94392993-94393012 | MS.gene073024:intron | 35.0% | |
GTCAAAGGAAAAATCTCCAA+GGG | + | chr3.4:94391629-94391648 | None:intergenic | 35.0% | |
GTCATATGGAATTGCTTCAA+TGG | - | chr3.4:94390127-94390146 | MS.gene073024:CDS | 35.0% | |
GTTCCTTTCTGTCATATATC+AGG | - | chr3.4:94391558-94391577 | MS.gene073024:intron | 35.0% | |
GTTTCTTATTATAGCCACAG+GGG | - | chr3.4:94391893-94391912 | MS.gene073024:intron | 35.0% | |
TCACCTGATATATGACAGAA+AGG | + | chr3.4:94391564-94391583 | None:intergenic | 35.0% | |
TCTGAAAATTGAAGAAGGGA+AGG | - | chr3.4:94391251-94391270 | MS.gene073024:intron | 35.0% | |
TGCTTTAACTACAACGATTG+TGG | - | chr3.4:94392992-94393011 | MS.gene073024:intron | 35.0% | |
TGGTCAACAAAGATCAAAGA+GGG | - | chr3.4:94391080-94391099 | MS.gene073024:intron | 35.0% | |
TTTCATGCTTATGTTTAGGC+TGG | - | chr3.4:94390586-94390605 | MS.gene073024:intron | 35.0% | |
! | ACCTTTGGTTTCTTCTTACT+GGG | - | chr3.4:94393203-94393222 | MS.gene073024:CDS | 35.0% |
! | ATGCTACCAATAGTCTTAGT+AGG | + | chr3.4:94391340-94391359 | None:intergenic | 35.0% |
! | ATTTAAGTTTGTGGGAACTC+GGG | - | chr3.4:94392396-94392415 | MS.gene073024:CDS | 35.0% |
! | TAAGAAGAACCATTGGTAAC+GGG | - | chr3.4:94391145-94391164 | MS.gene073024:intron | 35.0% |
! | TAGTATCTGATAACGTGACA+TGG | - | chr3.4:94392792-94392811 | MS.gene073024:intron | 35.0% |
!! | CTTATTCTTTCGTTGGTGAT+GGG | - | chr3.4:94392924-94392943 | MS.gene073024:intron | 35.0% |
!! | GATATTGACTCCTTTCAAAC+TGG | + | chr3.4:94390856-94390875 | None:intergenic | 35.0% |
AAGCCATGCTATACCCAAAA+AGG | + | chr3.4:94391651-94391670 | None:intergenic | 40.0% | |
ACCAAAGTGTATAAGCAAGG+TGG | + | chr3.4:94390730-94390749 | None:intergenic | 40.0% | |
ACCACCTTGCTTATACACTT+TGG | - | chr3.4:94390726-94390745 | MS.gene073024:intron | 40.0% | |
ACCCAGTAAGAAGAAACCAA+AGG | + | chr3.4:94393207-94393226 | None:intergenic | 40.0% | |
ACGATTGTGGGTGTTCTTAA+AGG | - | chr3.4:94393005-94393024 | MS.gene073024:intron | 40.0% | |
ACTTATCGCTGGATGTTTCA+TGG | - | chr3.4:94390917-94390936 | MS.gene073024:intron | 40.0% | |
AGTGAAGGTAGTTACAGATG+TGG | - | chr3.4:94393328-94393347 | MS.gene073024:CDS | 40.0% | |
ATCCAGTCACATTCAAAGCA+TGG | + | chr3.4:94393241-94393260 | None:intergenic | 40.0% | |
ATGATGCATGCTAAGTGTCT+TGG | + | chr3.4:94390310-94390329 | None:intergenic | 40.0% | |
ATGCTTATGTTTAGGCTGGA+GGG | - | chr3.4:94390590-94390609 | MS.gene073024:intron | 40.0% | |
CCATCACCAACGAAAGAATA+AGG | + | chr3.4:94392926-94392945 | None:intergenic | 40.0% | |
CTTATCGCTGGATGTTTCAT+GGG | - | chr3.4:94390918-94390937 | MS.gene073024:intron | 40.0% | |
CTTCTGCCTACTAAGACTAT+TGG | - | chr3.4:94391331-94391350 | MS.gene073024:intron | 40.0% | |
GAAACCATTACCTGAGTTGT+AGG | + | chr3.4:94390954-94390973 | None:intergenic | 40.0% | |
GCTATACCCAAAAAGGTCAA+AGG | + | chr3.4:94391644-94391663 | None:intergenic | 40.0% | |
GGTCAAAGGAAAAATCTCCA+AGG | + | chr3.4:94391630-94391649 | None:intergenic | 40.0% | |
GGTGATCCTTATTCTTTCGT+TGG | - | chr3.4:94392917-94392936 | MS.gene073024:intron | 40.0% | |
GTGGTCAACAAAGATCAAAG+AGG | - | chr3.4:94391079-94391098 | MS.gene073024:intron | 40.0% | |
TCGACCAAAGTGTATAAGCA+AGG | + | chr3.4:94390733-94390752 | None:intergenic | 40.0% | |
TGAAATTACCTGAGTGTGGT+GGG | - | chr3.4:94392468-94392487 | MS.gene073024:CDS | 40.0% | |
TGGAATTGCTTCAATGGCAA+TGG | - | chr3.4:94390133-94390152 | MS.gene073024:intron | 40.0% | |
TTAATTGCGGCAGTGTCATA+TGG | - | chr3.4:94390113-94390132 | MS.gene073024:CDS | 40.0% | |
TTATCGCTGGATGTTTCATG+GGG | - | chr3.4:94390919-94390938 | MS.gene073024:intron | 40.0% | |
TTTGCTTTGGCCAGTTTGAA+AGG | - | chr3.4:94390843-94390862 | MS.gene073024:intron | 40.0% | |
! | ACCATAGCTTGCAACATATC+TGG | - | chr3.4:94392745-94392764 | MS.gene073024:intron | 40.0% |
! | CAATAGTCTTAGTAGGCAGA+AGG | + | chr3.4:94391333-94391352 | None:intergenic | 40.0% |
! | CCATAGCTTGCAACATATCT+GGG | - | chr3.4:94392746-94392765 | MS.gene073024:intron | 40.0% |
! | CCTTATTCTTTCGTTGGTGA+TGG | - | chr3.4:94392923-94392942 | MS.gene073024:intron | 40.0% |
! | GACCTTTGGTTTCTTCTTAC+TGG | - | chr3.4:94393202-94393221 | MS.gene073024:CDS | 40.0% |
! | TCTTAAAGGAGTTGGTTCCA+CGG | - | chr3.4:94393019-94393038 | MS.gene073024:intron | 40.0% |
! | TGAGAATGGACTTTCATCAG+TGG | - | chr3.4:94391827-94391846 | MS.gene073024:intron | 40.0% |
! | TGCTTTGAATGTGACTGGAT+TGG | - | chr3.4:94393241-94393260 | MS.gene073024:intron | 40.0% |
! | TTTGGTTTCTTCTTACTGGG+TGG | - | chr3.4:94393206-94393225 | MS.gene073024:CDS | 40.0% |
!! | AAGAAGAACCATTGGTAACG+GGG | - | chr3.4:94391146-94391165 | MS.gene073024:intron | 40.0% |
!! | AAGTAGATTCTGCATCGGTT+CGG | + | chr3.4:94389996-94390015 | None:intergenic | 40.0% |
!! | CGCTACCATGTTTTGAATGT+TGG | - | chr3.4:94391993-94392012 | MS.gene073024:intron | 40.0% |
!! | TATGAAGAGGGTGTTTAAGC+TGG | - | chr3.4:94391181-94391200 | MS.gene073024:intron | 40.0% |
!!! | TGACCTTTTTGGGTATAGCA+TGG | - | chr3.4:94391645-94391664 | MS.gene073024:intron | 40.0% |
AAACCTCTCAAACCAGACTG+AGG | + | chr3.4:94392298-94392317 | None:intergenic | 45.0% | |
AAGAGCAAGAGGGGTAGATT+TGG | - | chr3.4:94390767-94390786 | MS.gene073024:intron | 45.0% | |
AAGAGGGGTAGATTTGGCAA+CGG | - | chr3.4:94390773-94390792 | MS.gene073024:intron | 45.0% | |
AAGCGGTGTAAGCCTCTTTA+TGG | + | chr3.4:94390892-94390911 | None:intergenic | 45.0% | |
AATGACTCTCCTCACTTTGC+AGG | - | chr3.4:94390196-94390215 | MS.gene073024:intron | 45.0% | |
ACAAGGTACATGGTCTGCAT+AGG | + | chr3.4:94391786-94391805 | None:intergenic | 45.0% | |
AGAATATGGGAATTCCCCTG+TGG | + | chr3.4:94391910-94391929 | None:intergenic | 45.0% | |
ATAACACCTACCTGTTGAGG+AGG | - | chr3.4:94392352-94392371 | MS.gene073024:intron | 45.0% | |
ATGGGATACACAAGAGCAAG+AGG | - | chr3.4:94390756-94390775 | MS.gene073024:intron | 45.0% | |
CATGCTTATGTTTAGGCTGG+AGG | - | chr3.4:94390589-94390608 | MS.gene073024:intron | 45.0% | |
CCCAGATATGTTGCAAGCTA+TGG | + | chr3.4:94392749-94392768 | None:intergenic | 45.0% | |
GAAATTACCTGAGTGTGGTG+GGG | - | chr3.4:94392469-94392488 | MS.gene073024:CDS | 45.0% | |
GAAGGTAGTTACAGATGTGG+AGG | - | chr3.4:94393331-94393350 | MS.gene073024:CDS | 45.0% | |
GAGACCTACAACTCAGGTAA+TGG | - | chr3.4:94390947-94390966 | MS.gene073024:intron | 45.0% | |
GAGTTGTCAGGCAACTCAAA+GGG | - | chr3.4:94392239-94392258 | MS.gene073024:intron | 45.0% | |
GCAAACAAACCTGCAAAGTG+AGG | + | chr3.4:94390208-94390227 | None:intergenic | 45.0% | |
GGAAAAGACCCGTCTTATCA+TGG | + | chr3.4:94392541-94392560 | None:intergenic | 45.0% | |
GGTGTGAAATTACCTGAGTG+TGG | - | chr3.4:94392464-94392483 | MS.gene073024:CDS | 45.0% | |
GTGAAATTACCTGAGTGTGG+TGG | - | chr3.4:94392467-94392486 | MS.gene073024:CDS | 45.0% | |
GTGGGTGTTCTTAAAGGAGT+TGG | - | chr3.4:94393011-94393030 | MS.gene073024:intron | 45.0% | |
TAACACCTACCTGTTGAGGA+GGG | - | chr3.4:94392353-94392372 | MS.gene073024:intron | 45.0% | |
TGCCAATGTCGCATTTGCTT+TGG | - | chr3.4:94390830-94390849 | MS.gene073024:intron | 45.0% | |
TGGGATACACAAGAGCAAGA+GGG | - | chr3.4:94390757-94390776 | MS.gene073024:intron | 45.0% | |
TTGGTCATCAATACAGCTGG+TGG | - | chr3.4:94393260-94393279 | MS.gene073024:intron | 45.0% | |
! | CAGATTTTTCCACCAGCACA+AGG | + | chr3.4:94391803-94391822 | None:intergenic | 45.0% |
! | CTTGTGCTGGTGGAAAAATC+TGG | - | chr3.4:94391801-94391820 | MS.gene073024:intron | 45.0% |
! | GAAAAATCTGGCGCTGAGAA+TGG | - | chr3.4:94391813-94391832 | MS.gene073024:intron | 45.0% |
! | GTCCATGCTTTGAATGTGAC+TGG | - | chr3.4:94393236-94393255 | MS.gene073024:intron | 45.0% |
! | TCAGTGATATTGACTGCTGC+TGG | - | chr3.4:94391589-94391608 | MS.gene073024:intron | 45.0% |
!! | CTTTGAGTTGCCTGACAACT+CGG | + | chr3.4:94392240-94392259 | None:intergenic | 45.0% |
!! | GGATTGGTCATCAATACAGC+TGG | - | chr3.4:94393257-94393276 | MS.gene073024:intron | 45.0% |
AACACCTACCTGTTGAGGAG+GGG | - | chr3.4:94392354-94392373 | MS.gene073024:intron | 50.0% | |
AGTTTGTGGGAACTCGGGAT+TGG | - | chr3.4:94392401-94392420 | MS.gene073024:CDS | 50.0% | |
CATGGTCTGCATAGGAGAGT+AGG | + | chr3.4:94391778-94391797 | None:intergenic | 50.0% | |
CCAGCGATAAGTACAGCAAG+CGG | + | chr3.4:94390909-94390928 | None:intergenic | 50.0% | |
CGAGTTGTCAGGCAACTCAA+AGG | - | chr3.4:94392238-94392257 | MS.gene073024:intron | 50.0% | |
CTCTCAAACCAGACTGAGGA+GGG | + | chr3.4:94392294-94392313 | None:intergenic | 50.0% | |
CTGGATGTTTCATGGGGAAG+GGG | - | chr3.4:94390925-94390944 | MS.gene073024:intron | 50.0% | |
GCTGGATGTTTCATGGGGAA+GGG | - | chr3.4:94390924-94390943 | MS.gene073024:intron | 50.0% | |
GCTTGTCTTTCCGAGTTGTC+AGG | - | chr3.4:94392227-94392246 | MS.gene073024:intron | 50.0% | |
GGCCAAAGCAAATGCGACAT+TGG | + | chr3.4:94390835-94390854 | None:intergenic | 50.0% | |
GGGATACACAAGAGCAAGAG+GGG | - | chr3.4:94390758-94390777 | MS.gene073024:intron | 50.0% | |
GTTTGTGGGAACTCGGGATT+GGG | - | chr3.4:94392402-94392421 | MS.gene073024:CDS | 50.0% | |
TAACCAAGCCCCGTTACCAA+TGG | + | chr3.4:94391157-94391176 | None:intergenic | 50.0% | |
TCTCAAACCAGACTGAGGAG+GGG | + | chr3.4:94392293-94392312 | None:intergenic | 50.0% | |
TTCCACCAGCACAAGGTACA+TGG | + | chr3.4:94391796-94391815 | None:intergenic | 50.0% | |
! | AGTTGGTTCCACGGTAAGCT+AGG | - | chr3.4:94393028-94393047 | MS.gene073024:intron | 50.0% |
! | TCAATACAGCTGGTGGTGTG+TGG | - | chr3.4:94393267-94393286 | MS.gene073024:intron | 50.0% |
ACACCTACCTGTTGAGGAGG+GGG | - | chr3.4:94392355-94392374 | MS.gene073024:intron | 55.0% | |
CCTCTCAAACCAGACTGAGG+AGG | + | chr3.4:94392295-94392314 | None:intergenic | 55.0% | |
CGCTGGATGTTTCATGGGGA+AGG | - | chr3.4:94390923-94390942 | MS.gene073024:intron | 55.0% | |
GAAGGGGAGACCTACAACTC+AGG | - | chr3.4:94390941-94390960 | MS.gene073024:intron | 55.0% | |
GACCATGTACCTTGTGCTGG+TGG | - | chr3.4:94391791-94391810 | MS.gene073024:intron | 55.0% | |
GCAGACCATGTACCTTGTGC+TGG | - | chr3.4:94391788-94391807 | MS.gene073024:intron | 55.0% | |
GGAGTTCTCATAGCAGCCCT+TGG | - | chr3.4:94391610-94391629 | MS.gene073024:intron | 55.0% | |
GGATCACTCCTAGCTTACCG+TGG | + | chr3.4:94393039-94393058 | None:intergenic | 55.0% | |
TAGTCTTCCCCTCCTCAGTC+TGG | - | chr3.4:94392283-94392302 | MS.gene073024:intron | 55.0% | |
TGAAACCGGGAGCAGTTGCT+TGG | + | chr3.4:94390799-94390818 | None:intergenic | 55.0% | |
! | ATTACCTGAGTGTGGTGGGG+TGG | - | chr3.4:94392472-94392491 | MS.gene073024:CDS | 55.0% |
! | CCTCCTCAGTCTGGTTTGAG+AGG | - | chr3.4:94392292-94392311 | MS.gene073024:intron | 55.0% |
!! | CCGCTTGCTGTACTTATCGC+TGG | - | chr3.4:94390906-94390925 | MS.gene073024:intron | 55.0% |
!! | GAACCATTGGTAACGGGGCT+TGG | - | chr3.4:94391151-94391170 | MS.gene073024:intron | 55.0% |
AACGGCCAAGCAACTGCTCC+CGG | - | chr3.4:94390791-94390810 | MS.gene073024:intron | 60.0% | |
ACCTACCTGTTGAGGAGGGG+GGG | - | chr3.4:94392357-94392376 | MS.gene073024:intron | 60.0% | |
CACCTACCTGTTGAGGAGGG+GGG | - | chr3.4:94392356-94392375 | MS.gene073024:intron | 60.0% | |
CTTTCCACCCCACCACACTC+AGG | + | chr3.4:94392479-94392498 | None:intergenic | 60.0% | |
ACCCCCCCTCCTCAACAGGT+AGG | + | chr3.4:94392361-94392380 | None:intergenic | 65.0% | |
CTCAACCCCCCCTCCTCAAC+AGG | + | chr3.4:94392365-94392384 | None:intergenic | 65.0% | |
CTGTTGAGGAGGGGGGGTTG+AGG | - | chr3.4:94392363-94392382 | MS.gene073024:intron | 65.0% | |
GAGGAGGGGGGGTTGAGGTT+TGG | - | chr3.4:94392368-94392387 | MS.gene073024:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 94389985 | 94393367 | 94389985 | ID=MS.gene073024 |
chr3.4 | mRNA | 94389985 | 94393367 | 94389985 | ID=MS.gene073024.t1;Parent=MS.gene073024 |
chr3.4 | exon | 94393324 | 94393367 | 94393324 | ID=MS.gene073024.t1.exon1;Parent=MS.gene073024.t1 |
chr3.4 | CDS | 94393324 | 94393367 | 94393324 | ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1 |
chr3.4 | exon | 94393135 | 94393240 | 94393135 | ID=MS.gene073024.t1.exon2;Parent=MS.gene073024.t1 |
chr3.4 | CDS | 94393135 | 94393240 | 94393135 | ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1 |
chr3.4 | exon | 94392390 | 94392635 | 94392390 | ID=MS.gene073024.t1.exon3;Parent=MS.gene073024.t1 |
chr3.4 | CDS | 94392390 | 94392635 | 94392390 | ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1 |
chr3.4 | exon | 94391662 | 94391772 | 94391662 | ID=MS.gene073024.t1.exon4;Parent=MS.gene073024.t1 |
chr3.4 | CDS | 94391662 | 94391772 | 94391662 | ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1 |
chr3.4 | exon | 94391402 | 94391560 | 94391402 | ID=MS.gene073024.t1.exon5;Parent=MS.gene073024.t1 |
chr3.4 | CDS | 94391402 | 94391560 | 94391402 | ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1 |
chr3.4 | exon | 94390312 | 94390455 | 94390312 | ID=MS.gene073024.t1.exon6;Parent=MS.gene073024.t1 |
chr3.4 | CDS | 94390312 | 94390455 | 94390312 | ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1 |
chr3.4 | exon | 94389985 | 94390149 | 94389985 | ID=MS.gene073024.t1.exon7;Parent=MS.gene073024.t1 |
chr3.4 | CDS | 94389985 | 94390149 | 94389985 | ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1 |
Gene Sequence |
Protein sequence |