AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073024


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073024.t1 MTR_3g109070 99.691 324 1 0 1 324 1 324 0.0 645
MS.gene073024.t1 MTR_3g109070 99.630 270 1 0 1 270 1 270 0.0 531
MS.gene073024.t1 MTR_3g109070 99.550 222 1 0 1 222 1 222 3.94e-158 442
MS.gene073024.t1 MTR_2g085160 27.835 291 191 4 33 306 40 328 4.13e-25 103
MS.gene073024.t1 MTR_2g085160 28.511 235 166 1 72 306 37 269 7.75e-24 99.0
MS.gene073024.t1 MTR_5g091610 86.000 50 7 0 222 271 192 241 1.27e-18 84.3
MS.gene073024.t1 MTR_1g012590 28.696 230 147 4 18 232 41 268 6.30e-18 82.8
MS.gene073024.t1 MTR_1g012590 28.507 221 137 4 18 217 41 261 2.24e-17 80.9
MS.gene073024.t1 MTR_3g463360 24.904 261 185 4 16 267 103 361 2.04e-15 76.6
MS.gene073024.t1 MTR_4g113270 28.077 260 163 7 20 265 18 267 3.88e-13 69.7
MS.gene073024.t1 MTR_4g113270 28.077 260 163 7 20 265 18 267 4.58e-13 69.3
MS.gene073024.t1 MTR_2g094640 23.077 312 224 8 7 311 2 304 1.60e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073024.t1 AT4G31600 81.481 324 59 1 1 324 1 323 0.0 536
MS.gene073024.t1 AT4G31600 80.531 226 43 1 1 226 1 225 1.00e-126 365
MS.gene073024.t1 AT2G14695 28.840 319 208 6 4 306 29 344 2.64e-33 125
MS.gene073024.t1 AT4G32272 30.565 301 193 6 18 304 42 340 3.32e-33 125
MS.gene073024.t1 AT4G32272 30.272 294 189 6 25 304 64 355 2.07e-31 121
MS.gene073024.t1 AT5G19980 25.740 338 213 11 4 323 5 322 6.06e-12 66.2

Find 74 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCTTTGGTTTCTTCTTAC+TGG 0.055823 3.4:-94390128 MS.gene073024:CDS
AATAATACAGATAAAGAATA+TGG 0.225037 3.4:+94391409 None:intergenic
ACGATTGTGGGTGTTCTTAA+AGG 0.250800 3.4:-94390325 MS.gene073024:CDS
AATGACTCTCCTCACTTTGC+AGG 0.263355 3.4:-94393134 MS.gene073024:intron
AAGCGGTGTAAGCCTCTTTA+TGG 0.268525 3.4:+94392441 None:intergenic
TTATTGTTTCTTCAGACCTT+TGG 0.300445 3.4:-94390142 MS.gene073024:intron
CCATCACCAACGAAAGAATA+AGG 0.367155 3.4:+94390407 None:intergenic
AAGAGCAAGAGGGGTAGATT+TGG 0.380015 3.4:-94392563 MS.gene073024:CDS
TGCCAATGTCGCATTTGCTT+TGG 0.382847 3.4:-94392500 MS.gene073024:CDS
CCTTATTCTTTCGTTGGTGA+TGG 0.391406 3.4:-94390407 MS.gene073024:CDS
ACCTTTGGTTTCTTCTTACT+GGG 0.392493 3.4:-94390127 MS.gene073024:CDS
ACTTATCGCTGGATGTTTCA+TGG 0.394022 3.4:-94392413 MS.gene073024:CDS
GAAACCATTACCTGAGTTGT+AGG 0.403057 3.4:+94392379 None:intergenic
GATATTGACTCCTTTCAAAC+TGG 0.405917 3.4:+94392477 None:intergenic
TTAATTGCGGCAGTGTCATA+TGG 0.413226 3.4:-94393217 MS.gene073024:CDS
AAGCCATGCTATACCCAAAA+AGG 0.414547 3.4:+94391682 None:intergenic
GCTTTAACTACAACGATTGT+GGG 0.428116 3.4:-94390337 MS.gene073024:CDS
GTGGGTGTTCTTAAAGGAGT+TGG 0.428224 3.4:-94390319 MS.gene073024:CDS
GGTGATCCTTATTCTTTCGT+TGG 0.439674 3.4:-94390413 MS.gene073024:CDS
CTCTTTATGGCAATATACAT+TGG 0.440204 3.4:+94392454 None:intergenic
CGCTGGATGTTTCATGGGGA+AGG 0.447004 3.4:-94392407 MS.gene073024:CDS
TGCTTTAACTACAACGATTG+TGG 0.452237 3.4:-94390338 MS.gene073024:CDS
TCTTTATGGCAATATACATT+GGG 0.457891 3.4:+94392455 None:intergenic
CTTATTCTTTCGTTGGTGAT+GGG 0.460235 3.4:-94390406 MS.gene073024:CDS
ATGTTTCTTATTATAGCCAC+AGG 0.466137 3.4:-94391439 MS.gene073024:CDS
TCAGTGATATTGACTGCTGC+TGG 0.467406 3.4:-94391741 MS.gene073024:CDS
CTTATCGCTGGATGTTTCAT+GGG 0.470441 3.4:-94392412 MS.gene073024:CDS
AACGGCCAAGCAACTGCTCC+CGG 0.482646 3.4:-94392539 MS.gene073024:CDS
GTCATATGGAATTGCTTCAA+TGG 0.483225 3.4:-94393203 MS.gene073024:CDS
TTCCACCAGCACAAGGTACA+TGG 0.486766 3.4:+94391537 None:intergenic
ACCACCTTGCTTATACACTT+TGG 0.489142 3.4:-94392604 MS.gene073024:CDS
GAAGGGGAGACCTACAACTC+AGG 0.497232 3.4:-94392389 MS.gene073024:intron
CTGGATGTTTCATGGGGAAG+GGG 0.498074 3.4:-94392405 MS.gene073024:CDS
GTCCATGCTTTGAATGTGAC+TGG 0.500341 3.4:-94390094 MS.gene073024:CDS
TGGAATTGCTTCAATGGCAA+TGG 0.506448 3.4:-94393197 MS.gene073024:CDS
ATAATACAGATAAAGAATAT+GGG 0.509077 3.4:+94391410 None:intergenic
CCGCTTGCTGTACTTATCGC+TGG 0.512463 3.4:-94392424 MS.gene073024:CDS
AAGTAGATTCTGCATCGGTT+CGG 0.516441 3.4:+94393337 None:intergenic
TTTGCTTTGGCCAGTTTGAA+AGG 0.517782 3.4:-94392487 MS.gene073024:CDS
GCAGACCATGTACCTTGTGC+TGG 0.517953 3.4:-94391542 MS.gene073024:intron
GGAGTTCTCATAGCAGCCCT+TGG 0.520280 3.4:-94391720 MS.gene073024:CDS
TGAAACCGGGAGCAGTTGCT+TGG 0.523462 3.4:+94392534 None:intergenic
GGCCAAAGCAAATGCGACAT+TGG 0.528052 3.4:+94392498 None:intergenic
CAATGTATATTGCCATAAAG+AGG 0.533866 3.4:-94392453 MS.gene073024:CDS
TTTATCTGTATTATTTGCAA+AGG 0.536255 3.4:-94391401 MS.gene073024:intron
GCTGGATGTTTCATGGGGAA+GGG 0.557636 3.4:-94392406 MS.gene073024:CDS
TGCTTTGAATGTGACTGGAT+TGG 0.558503 3.4:-94390089 MS.gene073024:CDS
TCGACCAAAGTGTATAAGCA+AGG 0.561117 3.4:+94392600 None:intergenic
GGATTGGTCATCAATACAGC+TGG 0.566974 3.4:-94390073 MS.gene073024:CDS
AACAATAGTGCACAAGAACA+TGG 0.587407 3.4:+94390366 None:intergenic
ATCCAGTCACATTCAAAGCA+TGG 0.590853 3.4:+94390092 None:intergenic
TTTGGTTTCTTCTTACTGGG+TGG 0.593368 3.4:-94390124 MS.gene073024:CDS
ATGGGATACACAAGAGCAAG+AGG 0.593687 3.4:-94392574 MS.gene073024:CDS
GACCATGTACCTTGTGCTGG+TGG 0.597252 3.4:-94391539 MS.gene073024:CDS
ATGTTGATGCAGTTTAATTG+CGG 0.617199 3.4:-94393230 MS.gene073024:intron
AGTGAAGGTAGTTACAGATG+TGG 0.618611 3.4:-94390002 MS.gene073024:CDS
GAAGGTAGTTACAGATGTGG+AGG 0.621484 3.4:-94389999 MS.gene073024:CDS
TCTTAAAGGAGTTGGTTCCA+CGG 0.622906 3.4:-94390311 MS.gene073024:intron
TGTTTCTTATTATAGCCACA+GGG 0.625509 3.4:-94391438 MS.gene073024:CDS
AAATGAAGTAGATTCTGCAT+CGG 0.629797 3.4:+94393332 None:intergenic
GGGATACACAAGAGCAAGAG+GGG 0.631770 3.4:-94392572 MS.gene073024:CDS
GCAAACAAACCTGCAAAGTG+AGG 0.632689 3.4:+94393125 None:intergenic
TGGGATACACAAGAGCAAGA+GGG 0.636053 3.4:-94392573 MS.gene073024:CDS
TCAATACAGCTGGTGGTGTG+TGG 0.641527 3.4:-94390063 MS.gene073024:CDS
TTATCGCTGGATGTTTCATG+GGG 0.645128 3.4:-94392411 MS.gene073024:CDS
TGCATCGGTTCGGATCTCCA+TGG 0.657034 3.4:+94393347 None:intergenic
AAGAGGGGTAGATTTGGCAA+CGG 0.660709 3.4:-94392557 MS.gene073024:CDS
CCAGCGATAAGTACAGCAAG+CGG 0.663001 3.4:+94392424 None:intergenic
GTTTCTTATTATAGCCACAG+GGG 0.683514 3.4:-94391437 MS.gene073024:CDS
TTGGTCATCAATACAGCTGG+TGG 0.688538 3.4:-94390070 MS.gene073024:CDS
TGAGAATGGACTTTCATCAG+TGG 0.688876 3.4:-94391503 MS.gene073024:CDS
ACCAAAGTGTATAAGCAAGG+TGG 0.697760 3.4:+94392603 None:intergenic
ACCCAGTAAGAAGAAACCAA+AGG 0.700359 3.4:+94390126 None:intergenic
AGAATATGGGAATTCCCCTG+TGG 0.758937 3.4:+94391423 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTA+GGG - chr3.4:94390403-94390422 MS.gene073024:CDS 0.0%
!!! TTTTTTTTTTTTTTTTTTTT+AGG - chr3.4:94390398-94390417 MS.gene073024:CDS 0.0%
!! AATAATACAGATAAAGAATA+TGG + chr3.4:94391924-94391943 None:intergenic 15.0%
!! ATAATAAGAAACATCAAAAA+CGG + chr3.4:94391885-94391904 None:intergenic 15.0%
!! ATAATACAGATAAAGAATAT+GGG + chr3.4:94391923-94391942 None:intergenic 15.0%
!! ATTATACAATATAGACAAAT+AGG + chr3.4:94392576-94392595 None:intergenic 15.0%
!! TTTAAGTAGGTTTAAATTAA+GGG - chr3.4:94390638-94390657 MS.gene073024:intron 15.0%
!!! CAGAAAAAAGTATATATATT+TGG - chr3.4:94390534-94390553 MS.gene073024:intron 15.0%
!!! CTTTTTTCTGATTATATTTA+AGG + chr3.4:94390524-94390543 None:intergenic 15.0%
!!! TTATTTTGAGTGAAAAAAAT+AGG + chr3.4:94392336-94392355 None:intergenic 15.0%
!!! TTTGATTTTTTTGTTTAAGT+AGG - chr3.4:94390625-94390644 MS.gene073024:intron 15.0%
!! AAATACAAACAAAAGATGAA+TGG + chr3.4:94393119-94393138 None:intergenic 20.0%
!! AAATGTAATGTTTGTTTGAT+TGG - chr3.4:94391304-94391323 MS.gene073024:intron 20.0%
!! AATCTTGTTGAAAGAAAAAT+AGG - chr3.4:94392436-94392455 MS.gene073024:CDS 20.0%
!! AATGTAATGTTTGTTTGATT+GGG - chr3.4:94391305-94391324 MS.gene073024:intron 20.0%
!! ATCTTGTTGAAAGAAAAATA+GGG - chr3.4:94392437-94392456 MS.gene073024:CDS 20.0%
!! GTTTAAGTAGGTTTAAATTA+AGG - chr3.4:94390637-94390656 MS.gene073024:intron 20.0%
!! TTTATCTGTATTATTTGCAA+AGG - chr3.4:94391929-94391948 MS.gene073024:intron 20.0%
!!! ATTTTGATCTACTTACTATT+AGG - chr3.4:94392161-94392180 MS.gene073024:intron 20.0%
!!! CTTTTATCTTAATGAATTTC+TGG - chr3.4:94391422-94391441 MS.gene073024:CDS 20.0%
!!! TAAATATAAGCATTTTGGAA+AGG + chr3.4:94390460-94390479 None:intergenic 20.0%
!!! TACAGTTGTATTTATTTTGT+GGG - chr3.4:94391477-94391496 MS.gene073024:CDS 20.0%
!!! TCAGTTCTAAATTATATCAT+TGG - chr3.4:94392652-94392671 MS.gene073024:intron 20.0%
!!! TTTCTGATTATATTTAAGGT+AGG + chr3.4:94390520-94390539 None:intergenic 20.0%
!!! TTTTTTGTTTGTTAATGTCA+AGG - chr3.4:94390988-94391007 MS.gene073024:intron 20.0%
! AAAATCTCTTGATTAAACTG+TGG - chr3.4:94391060-94391079 MS.gene073024:intron 25.0%
! AAGCACAAAACATTTAGTAT+TGG + chr3.4:94392193-94392212 None:intergenic 25.0%
! AGAACCTAATATTGATACAT+AGG - chr3.4:94393087-94393106 MS.gene073024:intron 25.0%
! AGCACAAAACATTTAGTATT+GGG + chr3.4:94392192-94392211 None:intergenic 25.0%
! AGTGTAAACTCTACTAAAAT+TGG + chr3.4:94391525-94391544 None:intergenic 25.0%
! ATGTAAGTGTAAACATGATT+TGG + chr3.4:94390561-94390580 None:intergenic 25.0%
! CATTATAGAAAAATGAAACC+GGG + chr3.4:94390812-94390831 None:intergenic 25.0%
! GCATTATAGAAAAATGAAAC+CGG + chr3.4:94390813-94390832 None:intergenic 25.0%
! GGAAAAACAGACTTATATTT+AGG - chr3.4:94390424-94390443 MS.gene073024:CDS 25.0%
! GTATCTATTACTCCATTTAA+AGG + chr3.4:94391724-94391743 None:intergenic 25.0%
! TATGCCTATGTATCAATATT+AGG + chr3.4:94393094-94393113 None:intergenic 25.0%
! TCTTTATGGCAATATACATT+GGG + chr3.4:94390878-94390897 None:intergenic 25.0%
! TTACTCCATTTAAAGGATTA+TGG + chr3.4:94391717-94391736 None:intergenic 25.0%
! TTGAAACATTATTCCCAAAA+TGG - chr3.4:94391226-94391245 MS.gene073024:intron 25.0%
! TTGAAAGAAAAATAGGGAAA+GGG - chr3.4:94392443-94392462 MS.gene073024:CDS 25.0%
! TTGAATGAAGAAAGAATTGA+AGG + chr3.4:94390040-94390059 None:intergenic 25.0%
!! AATCTACTTCATTTTCTTCA+AGG - chr3.4:94390007-94390026 MS.gene073024:CDS 25.0%
!! ATTTTTCCTTTGACCTTTTT+GGG - chr3.4:94391635-94391654 MS.gene073024:intron 25.0%
!! CAATTTTCAGAATCCATTTT+GGG + chr3.4:94391242-94391261 None:intergenic 25.0%
!! TACTTTTCATGCTTATGTTT+AGG - chr3.4:94390582-94390601 MS.gene073024:intron 25.0%
!! TCAATTTTCAGAATCCATTT+TGG + chr3.4:94391243-94391262 None:intergenic 25.0%
!! TTAATTTTGCCATGATAAGA+CGG - chr3.4:94392529-94392548 MS.gene073024:CDS 25.0%
!! TTGTATAAACTTTGTTGTGA+TGG - chr3.4:94392710-94392729 MS.gene073024:intron 25.0%
!!! ACAGTTGTATTTATTTTGTG+GGG - chr3.4:94391478-94391497 MS.gene073024:CDS 25.0%
!!! CTACAGTTGTATTTATTTTG+TGG - chr3.4:94391476-94391495 MS.gene073024:CDS 25.0%
!!! GAGTTATTCTTTTTCATTTC+TGG - chr3.4:94392896-94392915 MS.gene073024:intron 25.0%
!!! TTTTGAGTGAAAAAAATAGG+TGG + chr3.4:94392333-94392352 None:intergenic 25.0%
AAAGAAACTGCTAAAAGTCT+TGG - chr3.4:94392128-94392147 MS.gene073024:intron 30.0%
AAATGAAGTAGATTCTGCAT+CGG + chr3.4:94390001-94390020 None:intergenic 30.0%
AAATGCCAACATTCAAAACA+TGG + chr3.4:94392001-94392020 None:intergenic 30.0%
AAATGCTTATATTTACGAGC+AGG - chr3.4:94390465-94390484 MS.gene073024:intron 30.0%
AATGCTTATATTTACGAGCA+GGG - chr3.4:94390466-94390485 MS.gene073024:intron 30.0%
ACAAATAGGTGTTCAATTAC+TGG + chr3.4:94392562-94392581 None:intergenic 30.0%
AGAAGAATAAGAAGAACCAT+TGG - chr3.4:94391138-94391157 MS.gene073024:intron 30.0%
ATAAGAAGAACCATTGGTAA+CGG - chr3.4:94391144-94391163 MS.gene073024:intron 30.0%
ATACACTTTGGTCGAAAAAT+GGG - chr3.4:94390738-94390757 MS.gene073024:intron 30.0%
ATGTTGATGCAGTTTAATTG+CGG - chr3.4:94390100-94390119 MS.gene073024:CDS 30.0%
ATGTTTCTTATTATAGCCAC+AGG - chr3.4:94391891-94391910 MS.gene073024:intron 30.0%
CAATGTATATTGCCATAAAG+AGG - chr3.4:94390877-94390896 MS.gene073024:intron 30.0%
CTCTTTATGGCAATATACAT+TGG + chr3.4:94390879-94390898 None:intergenic 30.0%
CTTGGTTAATGTTATGAAGA+GGG - chr3.4:94391169-94391188 MS.gene073024:intron 30.0%
GAAAAAAAGTAAGACAGTGA+AGG - chr3.4:94393313-94393332 MS.gene073024:intron 30.0%
GAGTTTACACTCAATAGAAA+TGG - chr3.4:94391534-94391553 MS.gene073024:CDS 30.0%
GCACAAAACATTTAGTATTG+GGG + chr3.4:94392191-94392210 None:intergenic 30.0%
GTTGAAAGAAAAATAGGGAA+AGG - chr3.4:94392442-94392461 MS.gene073024:CDS 30.0%
GTTGTCCATAATCCTTTAAA+TGG - chr3.4:94391709-94391728 MS.gene073024:CDS 30.0%
TATACACTTTGGTCGAAAAA+TGG - chr3.4:94390737-94390756 MS.gene073024:intron 30.0%
TCTAGTGACAGAAAATTCTA+TGG + chr3.4:94393070-94393089 None:intergenic 30.0%
TGTTTCTTATTATAGCCACA+GGG - chr3.4:94391892-94391911 MS.gene073024:intron 30.0%
TTCTGGTAGAATAGACATTA+TGG - chr3.4:94391439-94391458 MS.gene073024:CDS 30.0%
! AATTTAAGTTTGTGGGAACT+CGG - chr3.4:94392395-94392414 MS.gene073024:CDS 30.0%
! CGTTCATAAACTAGCTTAAA+AGG + chr3.4:94391031-94391050 None:intergenic 30.0%
! CTGATTATATTTAAGGTAGG+AGG + chr3.4:94390517-94390536 None:intergenic 30.0%
! GATTTTTCCTTTGACCTTTT+TGG - chr3.4:94391634-94391653 MS.gene073024:intron 30.0%
! GCTCGTAAATATAAGCATTT+TGG + chr3.4:94390465-94390484 None:intergenic 30.0%
! GGATTCTGAAAATTGAAGAA+GGG - chr3.4:94391247-94391266 MS.gene073024:intron 30.0%
! TAATTTTGCCATGATAAGAC+GGG - chr3.4:94392530-94392549 MS.gene073024:CDS 30.0%
! TCATAAACTAGCTTAAAAGG+TGG + chr3.4:94391028-94391047 None:intergenic 30.0%
! TGGAGAGAATTTAAGTTTGT+GGG - chr3.4:94392388-94392407 MS.gene073024:intron 30.0%
! TGGATTCTGAAAATTGAAGA+AGG - chr3.4:94391246-94391265 MS.gene073024:intron 30.0%
! TTATTGTTTCTTCAGACCTT+TGG - chr3.4:94393188-94393207 MS.gene073024:CDS 30.0%
! TTGGAGAGAATTTAAGTTTG+TGG - chr3.4:94392387-94392406 MS.gene073024:intron 30.0%
! TTTCATTTCTGTTTTCTTCC+AGG - chr3.4:94391669-94391688 MS.gene073024:CDS 30.0%
!!! ATTTTTTGTCAGCTTAAGAG+AGG + chr3.4:94391374-94391393 None:intergenic 30.0%
!!! CAGTTGTATTTATTTTGTGG+GGG - chr3.4:94391479-94391498 MS.gene073024:CDS 30.0%
!!! TTTTTTGTCAGCTTAAGAGA+GGG + chr3.4:94391373-94391392 None:intergenic 30.0%
AAAATAACACCTACCTGTTG+AGG - chr3.4:94392349-94392368 MS.gene073024:intron 35.0%
AACAATAGTGCACAAGAACA+TGG + chr3.4:94392967-94392986 None:intergenic 35.0%
CAAAATATCAGCATATCACC+TGG + chr3.4:94391690-94391709 None:intergenic 35.0%
CTGTTCACTGCTGTAATATA+AGG + chr3.4:94391279-94391298 None:intergenic 35.0%
GAAAAAGAATAACTCTGCGA+AGG + chr3.4:94392891-94392910 None:intergenic 35.0%
GAAAATTCTATGGCAAACAC+AGG + chr3.4:94393060-94393079 None:intergenic 35.0%
GCTTGGTTAATGTTATGAAG+AGG - chr3.4:94391168-94391187 MS.gene073024:intron 35.0%
GCTTTAACTACAACGATTGT+GGG - chr3.4:94392993-94393012 MS.gene073024:intron 35.0%
GTCAAAGGAAAAATCTCCAA+GGG + chr3.4:94391629-94391648 None:intergenic 35.0%
GTCATATGGAATTGCTTCAA+TGG - chr3.4:94390127-94390146 MS.gene073024:CDS 35.0%
GTTCCTTTCTGTCATATATC+AGG - chr3.4:94391558-94391577 MS.gene073024:intron 35.0%
GTTTCTTATTATAGCCACAG+GGG - chr3.4:94391893-94391912 MS.gene073024:intron 35.0%
TCACCTGATATATGACAGAA+AGG + chr3.4:94391564-94391583 None:intergenic 35.0%
TCTGAAAATTGAAGAAGGGA+AGG - chr3.4:94391251-94391270 MS.gene073024:intron 35.0%
TGCTTTAACTACAACGATTG+TGG - chr3.4:94392992-94393011 MS.gene073024:intron 35.0%
TGGTCAACAAAGATCAAAGA+GGG - chr3.4:94391080-94391099 MS.gene073024:intron 35.0%
TTTCATGCTTATGTTTAGGC+TGG - chr3.4:94390586-94390605 MS.gene073024:intron 35.0%
! ACCTTTGGTTTCTTCTTACT+GGG - chr3.4:94393203-94393222 MS.gene073024:CDS 35.0%
! ATGCTACCAATAGTCTTAGT+AGG + chr3.4:94391340-94391359 None:intergenic 35.0%
! ATTTAAGTTTGTGGGAACTC+GGG - chr3.4:94392396-94392415 MS.gene073024:CDS 35.0%
! TAAGAAGAACCATTGGTAAC+GGG - chr3.4:94391145-94391164 MS.gene073024:intron 35.0%
! TAGTATCTGATAACGTGACA+TGG - chr3.4:94392792-94392811 MS.gene073024:intron 35.0%
!! CTTATTCTTTCGTTGGTGAT+GGG - chr3.4:94392924-94392943 MS.gene073024:intron 35.0%
!! GATATTGACTCCTTTCAAAC+TGG + chr3.4:94390856-94390875 None:intergenic 35.0%
AAGCCATGCTATACCCAAAA+AGG + chr3.4:94391651-94391670 None:intergenic 40.0%
ACCAAAGTGTATAAGCAAGG+TGG + chr3.4:94390730-94390749 None:intergenic 40.0%
ACCACCTTGCTTATACACTT+TGG - chr3.4:94390726-94390745 MS.gene073024:intron 40.0%
ACCCAGTAAGAAGAAACCAA+AGG + chr3.4:94393207-94393226 None:intergenic 40.0%
ACGATTGTGGGTGTTCTTAA+AGG - chr3.4:94393005-94393024 MS.gene073024:intron 40.0%
ACTTATCGCTGGATGTTTCA+TGG - chr3.4:94390917-94390936 MS.gene073024:intron 40.0%
AGTGAAGGTAGTTACAGATG+TGG - chr3.4:94393328-94393347 MS.gene073024:CDS 40.0%
ATCCAGTCACATTCAAAGCA+TGG + chr3.4:94393241-94393260 None:intergenic 40.0%
ATGATGCATGCTAAGTGTCT+TGG + chr3.4:94390310-94390329 None:intergenic 40.0%
ATGCTTATGTTTAGGCTGGA+GGG - chr3.4:94390590-94390609 MS.gene073024:intron 40.0%
CCATCACCAACGAAAGAATA+AGG + chr3.4:94392926-94392945 None:intergenic 40.0%
CTTATCGCTGGATGTTTCAT+GGG - chr3.4:94390918-94390937 MS.gene073024:intron 40.0%
CTTCTGCCTACTAAGACTAT+TGG - chr3.4:94391331-94391350 MS.gene073024:intron 40.0%
GAAACCATTACCTGAGTTGT+AGG + chr3.4:94390954-94390973 None:intergenic 40.0%
GCTATACCCAAAAAGGTCAA+AGG + chr3.4:94391644-94391663 None:intergenic 40.0%
GGTCAAAGGAAAAATCTCCA+AGG + chr3.4:94391630-94391649 None:intergenic 40.0%
GGTGATCCTTATTCTTTCGT+TGG - chr3.4:94392917-94392936 MS.gene073024:intron 40.0%
GTGGTCAACAAAGATCAAAG+AGG - chr3.4:94391079-94391098 MS.gene073024:intron 40.0%
TCGACCAAAGTGTATAAGCA+AGG + chr3.4:94390733-94390752 None:intergenic 40.0%
TGAAATTACCTGAGTGTGGT+GGG - chr3.4:94392468-94392487 MS.gene073024:CDS 40.0%
TGGAATTGCTTCAATGGCAA+TGG - chr3.4:94390133-94390152 MS.gene073024:intron 40.0%
TTAATTGCGGCAGTGTCATA+TGG - chr3.4:94390113-94390132 MS.gene073024:CDS 40.0%
TTATCGCTGGATGTTTCATG+GGG - chr3.4:94390919-94390938 MS.gene073024:intron 40.0%
TTTGCTTTGGCCAGTTTGAA+AGG - chr3.4:94390843-94390862 MS.gene073024:intron 40.0%
! ACCATAGCTTGCAACATATC+TGG - chr3.4:94392745-94392764 MS.gene073024:intron 40.0%
! CAATAGTCTTAGTAGGCAGA+AGG + chr3.4:94391333-94391352 None:intergenic 40.0%
! CCATAGCTTGCAACATATCT+GGG - chr3.4:94392746-94392765 MS.gene073024:intron 40.0%
! CCTTATTCTTTCGTTGGTGA+TGG - chr3.4:94392923-94392942 MS.gene073024:intron 40.0%
! GACCTTTGGTTTCTTCTTAC+TGG - chr3.4:94393202-94393221 MS.gene073024:CDS 40.0%
! TCTTAAAGGAGTTGGTTCCA+CGG - chr3.4:94393019-94393038 MS.gene073024:intron 40.0%
! TGAGAATGGACTTTCATCAG+TGG - chr3.4:94391827-94391846 MS.gene073024:intron 40.0%
! TGCTTTGAATGTGACTGGAT+TGG - chr3.4:94393241-94393260 MS.gene073024:intron 40.0%
! TTTGGTTTCTTCTTACTGGG+TGG - chr3.4:94393206-94393225 MS.gene073024:CDS 40.0%
!! AAGAAGAACCATTGGTAACG+GGG - chr3.4:94391146-94391165 MS.gene073024:intron 40.0%
!! AAGTAGATTCTGCATCGGTT+CGG + chr3.4:94389996-94390015 None:intergenic 40.0%
!! CGCTACCATGTTTTGAATGT+TGG - chr3.4:94391993-94392012 MS.gene073024:intron 40.0%
!! TATGAAGAGGGTGTTTAAGC+TGG - chr3.4:94391181-94391200 MS.gene073024:intron 40.0%
!!! TGACCTTTTTGGGTATAGCA+TGG - chr3.4:94391645-94391664 MS.gene073024:intron 40.0%
AAACCTCTCAAACCAGACTG+AGG + chr3.4:94392298-94392317 None:intergenic 45.0%
AAGAGCAAGAGGGGTAGATT+TGG - chr3.4:94390767-94390786 MS.gene073024:intron 45.0%
AAGAGGGGTAGATTTGGCAA+CGG - chr3.4:94390773-94390792 MS.gene073024:intron 45.0%
AAGCGGTGTAAGCCTCTTTA+TGG + chr3.4:94390892-94390911 None:intergenic 45.0%
AATGACTCTCCTCACTTTGC+AGG - chr3.4:94390196-94390215 MS.gene073024:intron 45.0%
ACAAGGTACATGGTCTGCAT+AGG + chr3.4:94391786-94391805 None:intergenic 45.0%
AGAATATGGGAATTCCCCTG+TGG + chr3.4:94391910-94391929 None:intergenic 45.0%
ATAACACCTACCTGTTGAGG+AGG - chr3.4:94392352-94392371 MS.gene073024:intron 45.0%
ATGGGATACACAAGAGCAAG+AGG - chr3.4:94390756-94390775 MS.gene073024:intron 45.0%
CATGCTTATGTTTAGGCTGG+AGG - chr3.4:94390589-94390608 MS.gene073024:intron 45.0%
CCCAGATATGTTGCAAGCTA+TGG + chr3.4:94392749-94392768 None:intergenic 45.0%
GAAATTACCTGAGTGTGGTG+GGG - chr3.4:94392469-94392488 MS.gene073024:CDS 45.0%
GAAGGTAGTTACAGATGTGG+AGG - chr3.4:94393331-94393350 MS.gene073024:CDS 45.0%
GAGACCTACAACTCAGGTAA+TGG - chr3.4:94390947-94390966 MS.gene073024:intron 45.0%
GAGTTGTCAGGCAACTCAAA+GGG - chr3.4:94392239-94392258 MS.gene073024:intron 45.0%
GCAAACAAACCTGCAAAGTG+AGG + chr3.4:94390208-94390227 None:intergenic 45.0%
GGAAAAGACCCGTCTTATCA+TGG + chr3.4:94392541-94392560 None:intergenic 45.0%
GGTGTGAAATTACCTGAGTG+TGG - chr3.4:94392464-94392483 MS.gene073024:CDS 45.0%
GTGAAATTACCTGAGTGTGG+TGG - chr3.4:94392467-94392486 MS.gene073024:CDS 45.0%
GTGGGTGTTCTTAAAGGAGT+TGG - chr3.4:94393011-94393030 MS.gene073024:intron 45.0%
TAACACCTACCTGTTGAGGA+GGG - chr3.4:94392353-94392372 MS.gene073024:intron 45.0%
TGCCAATGTCGCATTTGCTT+TGG - chr3.4:94390830-94390849 MS.gene073024:intron 45.0%
TGGGATACACAAGAGCAAGA+GGG - chr3.4:94390757-94390776 MS.gene073024:intron 45.0%
TTGGTCATCAATACAGCTGG+TGG - chr3.4:94393260-94393279 MS.gene073024:intron 45.0%
! CAGATTTTTCCACCAGCACA+AGG + chr3.4:94391803-94391822 None:intergenic 45.0%
! CTTGTGCTGGTGGAAAAATC+TGG - chr3.4:94391801-94391820 MS.gene073024:intron 45.0%
! GAAAAATCTGGCGCTGAGAA+TGG - chr3.4:94391813-94391832 MS.gene073024:intron 45.0%
! GTCCATGCTTTGAATGTGAC+TGG - chr3.4:94393236-94393255 MS.gene073024:intron 45.0%
! TCAGTGATATTGACTGCTGC+TGG - chr3.4:94391589-94391608 MS.gene073024:intron 45.0%
!! CTTTGAGTTGCCTGACAACT+CGG + chr3.4:94392240-94392259 None:intergenic 45.0%
!! GGATTGGTCATCAATACAGC+TGG - chr3.4:94393257-94393276 MS.gene073024:intron 45.0%
AACACCTACCTGTTGAGGAG+GGG - chr3.4:94392354-94392373 MS.gene073024:intron 50.0%
AGTTTGTGGGAACTCGGGAT+TGG - chr3.4:94392401-94392420 MS.gene073024:CDS 50.0%
CATGGTCTGCATAGGAGAGT+AGG + chr3.4:94391778-94391797 None:intergenic 50.0%
CCAGCGATAAGTACAGCAAG+CGG + chr3.4:94390909-94390928 None:intergenic 50.0%
CGAGTTGTCAGGCAACTCAA+AGG - chr3.4:94392238-94392257 MS.gene073024:intron 50.0%
CTCTCAAACCAGACTGAGGA+GGG + chr3.4:94392294-94392313 None:intergenic 50.0%
CTGGATGTTTCATGGGGAAG+GGG - chr3.4:94390925-94390944 MS.gene073024:intron 50.0%
GCTGGATGTTTCATGGGGAA+GGG - chr3.4:94390924-94390943 MS.gene073024:intron 50.0%
GCTTGTCTTTCCGAGTTGTC+AGG - chr3.4:94392227-94392246 MS.gene073024:intron 50.0%
GGCCAAAGCAAATGCGACAT+TGG + chr3.4:94390835-94390854 None:intergenic 50.0%
GGGATACACAAGAGCAAGAG+GGG - chr3.4:94390758-94390777 MS.gene073024:intron 50.0%
GTTTGTGGGAACTCGGGATT+GGG - chr3.4:94392402-94392421 MS.gene073024:CDS 50.0%
TAACCAAGCCCCGTTACCAA+TGG + chr3.4:94391157-94391176 None:intergenic 50.0%
TCTCAAACCAGACTGAGGAG+GGG + chr3.4:94392293-94392312 None:intergenic 50.0%
TTCCACCAGCACAAGGTACA+TGG + chr3.4:94391796-94391815 None:intergenic 50.0%
! AGTTGGTTCCACGGTAAGCT+AGG - chr3.4:94393028-94393047 MS.gene073024:intron 50.0%
! TCAATACAGCTGGTGGTGTG+TGG - chr3.4:94393267-94393286 MS.gene073024:intron 50.0%
ACACCTACCTGTTGAGGAGG+GGG - chr3.4:94392355-94392374 MS.gene073024:intron 55.0%
CCTCTCAAACCAGACTGAGG+AGG + chr3.4:94392295-94392314 None:intergenic 55.0%
CGCTGGATGTTTCATGGGGA+AGG - chr3.4:94390923-94390942 MS.gene073024:intron 55.0%
GAAGGGGAGACCTACAACTC+AGG - chr3.4:94390941-94390960 MS.gene073024:intron 55.0%
GACCATGTACCTTGTGCTGG+TGG - chr3.4:94391791-94391810 MS.gene073024:intron 55.0%
GCAGACCATGTACCTTGTGC+TGG - chr3.4:94391788-94391807 MS.gene073024:intron 55.0%
GGAGTTCTCATAGCAGCCCT+TGG - chr3.4:94391610-94391629 MS.gene073024:intron 55.0%
GGATCACTCCTAGCTTACCG+TGG + chr3.4:94393039-94393058 None:intergenic 55.0%
TAGTCTTCCCCTCCTCAGTC+TGG - chr3.4:94392283-94392302 MS.gene073024:intron 55.0%
TGAAACCGGGAGCAGTTGCT+TGG + chr3.4:94390799-94390818 None:intergenic 55.0%
! ATTACCTGAGTGTGGTGGGG+TGG - chr3.4:94392472-94392491 MS.gene073024:CDS 55.0%
! CCTCCTCAGTCTGGTTTGAG+AGG - chr3.4:94392292-94392311 MS.gene073024:intron 55.0%
!! CCGCTTGCTGTACTTATCGC+TGG - chr3.4:94390906-94390925 MS.gene073024:intron 55.0%
!! GAACCATTGGTAACGGGGCT+TGG - chr3.4:94391151-94391170 MS.gene073024:intron 55.0%
AACGGCCAAGCAACTGCTCC+CGG - chr3.4:94390791-94390810 MS.gene073024:intron 60.0%
ACCTACCTGTTGAGGAGGGG+GGG - chr3.4:94392357-94392376 MS.gene073024:intron 60.0%
CACCTACCTGTTGAGGAGGG+GGG - chr3.4:94392356-94392375 MS.gene073024:intron 60.0%
CTTTCCACCCCACCACACTC+AGG + chr3.4:94392479-94392498 None:intergenic 60.0%
ACCCCCCCTCCTCAACAGGT+AGG + chr3.4:94392361-94392380 None:intergenic 65.0%
CTCAACCCCCCCTCCTCAAC+AGG + chr3.4:94392365-94392384 None:intergenic 65.0%
CTGTTGAGGAGGGGGGGTTG+AGG - chr3.4:94392363-94392382 MS.gene073024:intron 65.0%
GAGGAGGGGGGGTTGAGGTT+TGG - chr3.4:94392368-94392387 MS.gene073024:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 94389985 94393367 94389985 ID=MS.gene073024
chr3.4 mRNA 94389985 94393367 94389985 ID=MS.gene073024.t1;Parent=MS.gene073024
chr3.4 exon 94393324 94393367 94393324 ID=MS.gene073024.t1.exon1;Parent=MS.gene073024.t1
chr3.4 CDS 94393324 94393367 94393324 ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1
chr3.4 exon 94393135 94393240 94393135 ID=MS.gene073024.t1.exon2;Parent=MS.gene073024.t1
chr3.4 CDS 94393135 94393240 94393135 ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1
chr3.4 exon 94392390 94392635 94392390 ID=MS.gene073024.t1.exon3;Parent=MS.gene073024.t1
chr3.4 CDS 94392390 94392635 94392390 ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1
chr3.4 exon 94391662 94391772 94391662 ID=MS.gene073024.t1.exon4;Parent=MS.gene073024.t1
chr3.4 CDS 94391662 94391772 94391662 ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1
chr3.4 exon 94391402 94391560 94391402 ID=MS.gene073024.t1.exon5;Parent=MS.gene073024.t1
chr3.4 CDS 94391402 94391560 94391402 ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1
chr3.4 exon 94390312 94390455 94390312 ID=MS.gene073024.t1.exon6;Parent=MS.gene073024.t1
chr3.4 CDS 94390312 94390455 94390312 ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1
chr3.4 exon 94389985 94390149 94389985 ID=MS.gene073024.t1.exon7;Parent=MS.gene073024.t1
chr3.4 CDS 94389985 94390149 94389985 ID=cds.MS.gene073024.t1;Parent=MS.gene073024.t1
Gene Sequence

>MS.gene073024

ATGGAGATCCGAACCGATGCAGAATCTACTTCATTTTCTTCAAGGTTTTCTTCCTTCAATTCTTTCTTCATTCAATCGCAAGCTAGAATTAATTAACAGTTAATCTAATTGCTAAATGTTGATGCAGTTTAATTGCGGCAGTGTCATATGGAATTGCTTCAATGGCAATGGTTTTTATCAATAAAGCTGTTCTCATGCAGTATTCACATTCAATGACTCTCCTCACTTTGCAGGTTTGTTTGCATTGCATGCTTAATCTATCTTTCTCTTTTATGTATTGATTGATATATGCATGTCTTCAATTCTGACTTATATATATCTTCCAAGACACTTAGCATGCATCATTAATTATTTTGACTATATTTATTTTAAAAAATAATAATAATAAATGAATCTAGTAATTTAAAACAGACTTTTTTTTTTTTTTTTTTTTTTTTAGGGAAAAACAGACTTATATTTAGGAATAAACTTTCCTTTCCAAAATGCTTATATTTACGAGCAGGGTTAGTGATAAATCATAAATGCACTTCCTCCTACCTTAAATATAATCAGAAAAAAGTATATATATTTGGTCCAAATCATGTTTACACTTACATATACTTTTCATGCTTATGTTTAGGCTGGAGGGAGTATCTTATAATTTGATTTTTTTGTTTAAGTAGGTTTAAATTAAGGGTCAGATGTAATATTGTTTTTTAACATTCATTTATTGTTTTTTTTTGTCTTTCTTAGCAACTAGTTACCACCTTGCTTATACACTTTGGTCGAAAAATGGGATACACAAGAGCAAGAGGGGTAGATTTGGCAACGGCCAAGCAACTGCTCCCGGTTTCATTTTTCTATAATGCCAATGTCGCATTTGCTTTGGCCAGTTTGAAAGGAGTCAATATCCCAATGTATATTGCCATAAAGAGGCTTACACCGCTTGCTGTACTTATCGCTGGATGTTTCATGGGGAAGGGGAGACCTACAACTCAGGTAATGGTTTCTGTAGTTTTCTTCATTTTTTGTTTGTTAATGTCAAGGTTGTGTTTATTCTGCCACCTTTTAAGCTAGTTTATGAACGATAAACAGCAAAATCTCTTGATTAAACTGTGGTCAACAAAGATCAAAGAGGGTTATTAGAAAAAGCATTTTTTGCTTTTAAAGAAGAAGAAGAATAAGAAGAACCATTGGTAACGGGGCTTGGTTAATGTTATGAAGAGGGTGTTTAAGCTGGTAATACAACTTTGATCTTCGTGTTGAAACATTATTCCCAAAATGGATTCTGAAAATTGAAGAAGGGAAGGAACCTTATATTACAGCAGTGAACAGTATCAAAATGTAATGTTTGTTTGATTGGGTGCCTTCTGCCTACTAAGACTATTGGTAGCATTATATTATTTCCCTCTCTTAAGCTGACAAAAAATCTTTTGATGTTAGATTTATCATCATTTGCTTTTATCTTAATGAATTTCTGGTAGAATAGACATTATGGAATCTCAATCTAAACTACAGTTGTATTTATTTTGTGGGGGCTGTTGTTTTGATTTCTCTACCAATTTTAGTAGAGTTTACACTCAATAGAAATGGTGTTCCTTTCTGTCATATATCAGGTGACTCTCTCAGTGATATTGACTGCTGCTGGAGTTCTCATAGCAGCCCTTGGAGATTTTTCCTTTGACCTTTTTGGGTATAGCATGGCTTTCATTTCTGTTTTCTTCCAGGTGATATGCTGATATTTTGTTGTCCATAATCCTTTAAATGGAGTAATAGATACTGTAACTGTGCATGCTTTTCTCATAGTGTTGCCTACTCTCCTATGCAGACCATGTACCTTGTGCTGGTGGAAAAATCTGGCGCTGAGAATGGACTTTCATCAGTGGAAATCATGTTCTACAACAGTTTTTTATCTCTTCCGTTTTTGATGTTTCTTATTATAGCCACAGGGGAATTCCCATATTCTTTATCTGTATTATTTGCAAAGGTCAGACTCTTAAAGTTATTCTTTGTATCAAAATTGATTCTGCGCTACCATGTTTTGAATGTTGGCATTTTCTGTCTTTTGATCTAGACAGTCTGATAAATACAATGCTTTCAAAATTAACTGCTAAAAGTCTGTTTTTTGATCTAGACAATCTGATAAATAAATATAATGTTTTCAAAAGAAACTGCTAAAAGTCTTGGTTATAGTTTGATTTTGATCTACTTACTATTAGGTTATCCCCAATACTAAATGTTTTGTGCTTATTTGTTGTCTTGTGCTTGTCTTTCCGAGTTGTCAGGCAACTCAAAGGGAATTATCAATTATGTCAGCGCTAGTCTTCCCCTCCTCAGTCTGGTTTGAGAGGTTTTATGCTAATATTCCACCTATTTTTTTCACTCAAAATAACACCTACCTGTTGAGGAGGGGGGGTTGAGGTTTGGAGAGAATTTAAGTTTGTGGGAACTCGGGATTGGGCATGAAACAGAAATCTTGTTGAAAGAAAAATAGGGAAAGGGTGTGAAATTACCTGAGTGTGGTGGGGTGGAAAGCAAGTTTAATACTTCTGCTTAGAGTAACTTTTAATTTTGCCATGATAAGACGGGTCTTTTCCAGTAATTGAACACCTATTTGTCTATATTGTATAATAATGAACTAGATGCTCTATAATTATAAATTAATTGTCAGATCAATTGACAGTTTATTCAGTTCTAAATTATATCATTGGCTTAGTGTATTTCTCAAATGAGAATCAATTATAGATTGTATAAACTTTGTTGTGATGGTTAACATCAGAAACCATAGCTTGCAACATATCTGGGAAAGACTAAAAGTTTGCATATACTAGTATCTGATAACGTGACATGGCTGTGTCATTTATTATTTTAGTGATATATTGATGTGAAAGCTAGCATCTAACTTAACTTTTTTTTTTTTTTTTCCTTCGCAGAGTTATTCTTTTTCATTTCTGGTGATCCTTATTCTTTCGTTGGTGATGGGCATTGTTCTCAACTTCACCATGTTCTTGTGCACTATTGTTAATTCTGCTTTAACTACAACGATTGTGGGTGTTCTTAAAGGAGTTGGTTCCACGGTAAGCTAGGAGTGATCCTGTGTTTGCCATAGAATTTTCTGTCACTAGAACCTAATATTGATACATAGGCATAATCCATTCATCTTTTGTTTGTATTTTATGTGACTTATTACAATAAATAATAAATACAAACACTAAATCTGTTTCTTATTGTTTCTTCAGACCTTTGGTTTCTTCTTACTGGGTGGTGTTCAAGTCCATGCTTTGAATGTGACTGGATTGGTCATCAATACAGCTGGTGGTGTGTGGTATTCATATGCTAAATATCAGCAGAAAAAAAGTAAGACAGTGAAGGTAGTTACAGATGTGGAGGCTCATCGTAAATAG

Protein sequence

>MS.gene073024.t1

MEIRTDAESTSFSSSLIAAVSYGIASMAMVFINKAVLMQYSHSMTLLTLQQLVTTLLIHFGRKMGYTRARGVDLATAKQLLPVSFFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLIAGCFMGKGRPTTQVTLSVILTAAGVLIAALGDFSFDLFGYSMAFISVFFQTMYLVLVEKSGAENGLSSVEIMFYNSFLSLPFLMFLIIATGEFPYSLSVLFAKSYSFSFLVILILSLVMGIVLNFTMFLCTIVNSALTTTIVGVLKGVGSTTFGFFLLGGVQVHALNVTGLVINTAGGVWYSYAKYQQKKSKTVKVVTDVEAHRK