Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07313.t1 | RHN81020.1 | 78.9 | 422 | 84 | 2 | 27 | 445 | 120 | 539 | 6.30E-184 | 653.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07313.t1 | Q9FZ24 | 44.0 | 391 | 209 | 6 | 23 | 405 | 97 | 485 | 8.8e-86 | 318.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07313.t1 | G7ICW4 | 78.9 | 422 | 84 | 2 | 27 | 445 | 61 | 480 | 4.5e-184 | 653.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07313 | MS.gene056432 | PPI |
| MS.gene07313 | MS.gene068108 | PPI |
| MS.gene07313 | MS.gene52807 | PPI |
| MS.gene07313 | MS.gene008871 | PPI |
| MS.gene014383 | MS.gene07313 | PPI |
| MS.gene07313 | MS.gene067932 | PPI |
| MS.gene07313 | MS.gene068115 | PPI |
| MS.gene07313 | MS.gene064795 | PPI |
| MS.gene008872 | MS.gene07313 | PPI |
| MS.gene07313 | MS.gene69362 | PPI |
| MS.gene07313 | MS.gene008863 | PPI |
| MS.gene068116 | MS.gene07313 | PPI |
| MS.gene07313 | MS.gene067938 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07313.t1 | MTR_1g086820 | 78.910 | 422 | 84 | 2 | 27 | 445 | 61 | 480 | 0.0 | 677 |
| MS.gene07313.t1 | MTR_8g069570 | 36.923 | 455 | 261 | 9 | 14 | 445 | 32 | 483 | 5.53e-85 | 269 |
| MS.gene07313.t1 | MTR_8g007375 | 32.361 | 377 | 248 | 5 | 65 | 437 | 16 | 389 | 2.73e-53 | 184 |
| MS.gene07313.t1 | MTR_2g013450 | 28.910 | 422 | 279 | 8 | 30 | 436 | 61 | 476 | 3.25e-51 | 180 |
| MS.gene07313.t1 | MTR_1g072300 | 30.077 | 389 | 256 | 7 | 29 | 407 | 69 | 451 | 2.13e-48 | 173 |
| MS.gene07313.t1 | MTR_2g047855 | 30.357 | 336 | 223 | 6 | 12 | 339 | 44 | 376 | 8.24e-44 | 160 |
| MS.gene07313.t1 | MTR_8g465890 | 29.101 | 378 | 255 | 6 | 27 | 395 | 57 | 430 | 7.36e-42 | 155 |
| MS.gene07313.t1 | MTR_3g099753 | 28.117 | 377 | 261 | 5 | 23 | 391 | 63 | 437 | 3.46e-41 | 153 |
| MS.gene07313.t1 | MTR_3g099753 | 28.117 | 377 | 261 | 5 | 23 | 391 | 87 | 461 | 5.98e-41 | 153 |
| MS.gene07313.t1 | MTR_8g059115 | 27.457 | 346 | 247 | 3 | 64 | 407 | 14 | 357 | 1.81e-40 | 149 |
| MS.gene07313.t1 | MTR_2g090290 | 30.159 | 315 | 202 | 6 | 32 | 332 | 67 | 377 | 2.76e-35 | 137 |
| MS.gene07313.t1 | MTR_1g022400 | 28.889 | 315 | 210 | 8 | 30 | 332 | 87 | 399 | 3.65e-31 | 124 |
| MS.gene07313.t1 | MTR_8g031520 | 34.731 | 167 | 103 | 2 | 27 | 187 | 134 | 300 | 4.34e-20 | 90.9 |
| MS.gene07313.t1 | MTR_7g089770 | 22.656 | 384 | 274 | 12 | 27 | 401 | 186 | 555 | 6.68e-17 | 83.6 |
| MS.gene07313.t1 | MTR_2g096880 | 25.097 | 259 | 180 | 6 | 48 | 298 | 94 | 346 | 6.17e-15 | 77.0 |
| MS.gene07313.t1 | MTR_1g050750 | 24.653 | 288 | 206 | 7 | 27 | 307 | 120 | 403 | 1.03e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07313.t1 | AT1G02370 | 43.990 | 391 | 209 | 6 | 23 | 405 | 97 | 485 | 6.12e-108 | 330 |
| MS.gene07313.t1 | AT4G01990 | 43.557 | 388 | 211 | 5 | 23 | 405 | 66 | 450 | 2.41e-104 | 319 |
| MS.gene07313.t1 | AT1G60770 | 36.952 | 433 | 253 | 10 | 29 | 445 | 55 | 483 | 2.29e-82 | 262 |
| MS.gene07313.t1 | AT1G02150 | 32.990 | 388 | 251 | 4 | 26 | 406 | 96 | 481 | 1.04e-62 | 212 |
| MS.gene07313.t1 | AT4G21705 | 31.701 | 388 | 250 | 8 | 30 | 407 | 58 | 440 | 1.08e-54 | 189 |
| MS.gene07313.t1 | AT5G27460 | 31.781 | 365 | 237 | 6 | 41 | 395 | 82 | 444 | 2.10e-51 | 181 |
| MS.gene07313.t1 | AT2G20710 | 30.366 | 382 | 254 | 6 | 31 | 406 | 72 | 447 | 1.19e-48 | 173 |
| MS.gene07313.t1 | AT4G02820 | 28.281 | 442 | 294 | 9 | 8 | 436 | 74 | 505 | 4.45e-46 | 167 |
| MS.gene07313.t1 | AT2G20710 | 30.523 | 344 | 231 | 5 | 65 | 406 | 15 | 352 | 5.00e-46 | 164 |
| MS.gene07313.t1 | AT5G09450 | 32.168 | 286 | 177 | 8 | 31 | 304 | 89 | 369 | 4.29e-35 | 135 |
| MS.gene07313.t1 | AT1G28020 | 28.846 | 312 | 212 | 6 | 21 | 324 | 60 | 369 | 1.23e-30 | 124 |
| MS.gene07313.t1 | AT1G80270 | 23.239 | 426 | 289 | 14 | 31 | 436 | 162 | 569 | 3.41e-19 | 90.5 |
| MS.gene07313.t1 | AT1G80270 | 23.239 | 426 | 289 | 14 | 31 | 436 | 162 | 569 | 3.41e-19 | 90.5 |
| MS.gene07313.t1 | AT1G80270 | 23.239 | 426 | 289 | 14 | 31 | 436 | 162 | 569 | 3.41e-19 | 90.5 |
| MS.gene07313.t1 | AT1G80270 | 23.239 | 426 | 289 | 14 | 31 | 436 | 162 | 569 | 3.41e-19 | 90.5 |
| MS.gene07313.t1 | AT1G80270 | 23.239 | 426 | 289 | 14 | 31 | 436 | 162 | 569 | 3.41e-19 | 90.5 |
| MS.gene07313.t1 | AT3G15590 | 29.583 | 240 | 154 | 7 | 27 | 258 | 171 | 403 | 7.73e-19 | 89.7 |
| MS.gene07313.t1 | AT3G15590 | 29.583 | 240 | 154 | 7 | 27 | 258 | 171 | 403 | 7.73e-19 | 89.7 |
| MS.gene07313.t1 | AT3G11380 | 26.230 | 305 | 184 | 6 | 36 | 332 | 82 | 353 | 1.56e-17 | 85.5 |
| MS.gene07313.t1 | AT3G11380 | 33.540 | 161 | 100 | 5 | 32 | 185 | 381 | 541 | 3.02e-11 | 65.9 |
| MS.gene07313.t1 | AT1G15480 | 26.022 | 269 | 185 | 7 | 29 | 289 | 158 | 420 | 9.08e-17 | 83.2 |
| MS.gene07313.t1 | AT1G07590 | 24.430 | 307 | 218 | 6 | 30 | 328 | 98 | 398 | 1.28e-16 | 82.4 |
Find 83 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCATAATAACATTGTTTA+AGG | 0.231511 | 1.4:-69211530 | MS.gene07313:CDS |
| AGGACCTTTCTTTAGGATTC+AGG | 0.243843 | 1.4:-69211383 | MS.gene07313:CDS |
| CCGTATCATTAAGCCTTCTA+AGG | 0.261570 | 1.4:+69211554 | None:intergenic |
| AAGCTGAGTTGATGCTTAAA+AGG | 0.266289 | 1.4:-69211735 | MS.gene07313:CDS |
| ATTGTTCATGCTGTATTTAT+TGG | 0.275275 | 1.4:-69211359 | MS.gene07313:CDS |
| TTTGATAAGATGGATGAATT+AGG | 0.276635 | 1.4:-69212042 | MS.gene07313:CDS |
| CATCACTTGTTGAGCCTCTA+TGG | 0.288847 | 1.4:-69211673 | MS.gene07313:CDS |
| TTTGTCTTTCACCAATTTGA+TGG | 0.304398 | 1.4:-69212007 | MS.gene07313:CDS |
| TTATGCTTTCTACCCTTAGA+AGG | 0.334013 | 1.4:-69211567 | MS.gene07313:CDS |
| CATATACAAAACCATCAAAT+TGG | 0.348712 | 1.4:+69211996 | None:intergenic |
| GGTGTAGAGGACCTTTCTTT+AGG | 0.358064 | 1.4:-69211390 | MS.gene07313:CDS |
| CAAAGCCTTAGATTAGAAAA+AGG | 0.363276 | 1.4:-69212553 | MS.gene07313:CDS |
| CTGAATTTACATACACTGTT+TGG | 0.374347 | 1.4:-69211906 | MS.gene07313:CDS |
| TTAAACAGGTTTATAGAGTC+TGG | 0.387267 | 1.4:-69211636 | MS.gene07313:CDS |
| ATTCATGACTTTCGAAAGAA+TGG | 0.402966 | 1.4:-69212514 | MS.gene07313:CDS |
| CTAATCTAAGGCTTTGCCTT+CGG | 0.412672 | 1.4:+69212560 | None:intergenic |
| TGGTACTGGTAATGTTAAAC+AGG | 0.422414 | 1.4:-69211650 | MS.gene07313:CDS |
| CAGCTTTGAATGACATTGGT+GGG | 0.429431 | 1.4:-69211870 | MS.gene07313:CDS |
| AAGACAAAGACAAAATTGAT+TGG | 0.437683 | 1.4:-69211810 | MS.gene07313:CDS |
| AGTAATGCAAGTTTCAATAC+AGG | 0.442716 | 1.4:+69211153 | None:intergenic |
| GGCTCATAGCACCATTCAAT+TGG | 0.443758 | 1.4:+69211329 | None:intergenic |
| TCAGTTGGTTAATGTTATGA+AGG | 0.445036 | 1.4:-69211947 | MS.gene07313:CDS |
| TGGGGTTGAAAGGGTTTATG+AGG | 0.447556 | 1.4:-69211851 | MS.gene07313:CDS |
| ATGAGTTAAGCAAGATTCTC+AGG | 0.451952 | 1.4:-69211195 | MS.gene07313:CDS |
| CATAATAAAATAGCTATGAT+TGG | 0.458064 | 1.4:+69211585 | None:intergenic |
| ATGACATTGGTGGGGTTGAA+AGG | 0.462059 | 1.4:-69211861 | MS.gene07313:CDS |
| TTGAGCCTCTATGGTGGTAC+TGG | 0.464901 | 1.4:-69211664 | MS.gene07313:CDS |
| TGGTATTCATCAAGTATTGA+AGG | 0.467131 | 1.4:-69211113 | MS.gene07313:CDS |
| TGACATTGGTGGGGTTGAAA+GGG | 0.469956 | 1.4:-69211860 | MS.gene07313:CDS |
| AATAACATTGTTTAAGGAGT+GGG | 0.471012 | 1.4:-69211524 | MS.gene07313:CDS |
| TGGTAACTTTCGCGTTGCAC+TGG | 0.472277 | 1.4:+69211694 | None:intergenic |
| TTCAATCACTCCTTTCACTT+TGG | 0.474139 | 1.4:+69212176 | None:intergenic |
| TTACCACAGACTAGCGGTGC+TGG | 0.481394 | 1.4:-69212628 | None:intergenic |
| AGCTTGTTAATTATGATACA+AGG | 0.497708 | 1.4:-69211495 | MS.gene07313:CDS |
| GCTGCTATCTATATAAAAGC+TGG | 0.505469 | 1.4:-69211769 | MS.gene07313:CDS |
| ACTGCATCTGAATCATCTCT+TGG | 0.510797 | 1.4:-69211133 | MS.gene07313:CDS |
| CGTCTGCGACACAGTTTCTC+CGG | 0.521322 | 1.4:+69212599 | None:intergenic |
| CCTTAGAAGGCTTAATGATA+CGG | 0.522341 | 1.4:-69211554 | MS.gene07313:CDS |
| AATTATGATACAAGGTTGGC+TGG | 0.523312 | 1.4:-69211487 | MS.gene07313:CDS |
| TTGGAGATATGCCAATTGAA+TGG | 0.531282 | 1.4:-69211340 | MS.gene07313:CDS |
| AATTCCTGAATCCTAAAGAA+AGG | 0.537404 | 1.4:+69211379 | None:intergenic |
| TGTTAATTATGATACAAGGT+TGG | 0.541417 | 1.4:-69211491 | MS.gene07313:CDS |
| GTTACAAGTTCTCGTGTGCA+TGG | 0.545024 | 1.4:+69211074 | None:intergenic |
| CAGTTGGTTAATGTTATGAA+GGG | 0.560663 | 1.4:-69211946 | MS.gene07313:CDS |
| CTAGCGGTGCTGGAAAAGAC+CGG | 0.562565 | 1.4:-69212618 | MS.gene07313:CDS |
| AGAAAAGCACTCACAACTTG+TGG | 0.563214 | 1.4:+69211256 | None:intergenic |
| GCAGCTTTGAATGACATTGG+TGG | 0.569276 | 1.4:-69211871 | MS.gene07313:CDS |
| AGCTTTGAATGACATTGGTG+GGG | 0.572390 | 1.4:-69211869 | MS.gene07313:CDS |
| CTTCTAAACTGTTACTGCAA+GGG | 0.573008 | 1.4:-69212093 | MS.gene07313:CDS |
| CAGATTCCATCTCGCATTCG+AGG | 0.574452 | 1.4:-69212491 | MS.gene07313:intron |
| GCACTCACAACTTGTGGTGA+AGG | 0.577944 | 1.4:+69211262 | None:intergenic |
| TAATAACATTGTTTAAGGAG+TGG | 0.580243 | 1.4:-69211525 | MS.gene07313:CDS |
| TATCTTGTGTCCAAAGTGAA+AGG | 0.580372 | 1.4:-69212186 | MS.gene07313:CDS |
| TACGCTCAAGAAGGTCTCAC+CGG | 0.582181 | 1.4:-69211611 | MS.gene07313:CDS |
| GAAGCCGCACTTTCAGAAGT+CGG | 0.583270 | 1.4:-69211301 | MS.gene07313:CDS |
| TCTTCTAAACTGTTACTGCA+AGG | 0.585829 | 1.4:-69212094 | MS.gene07313:CDS |
| AATGGTTGCAGATAATGGAA+TGG | 0.590967 | 1.4:-69212251 | MS.gene07313:intron |
| AAGGCTCTTAAGCGGTGTAG+AGG | 0.591462 | 1.4:-69211403 | MS.gene07313:CDS |
| CTGAAAGTGCGGCTTCTAAG+TGG | 0.596496 | 1.4:+69211308 | None:intergenic |
| CATAGAGGCTCAACAAGTGA+TGG | 0.603610 | 1.4:+69211674 | None:intergenic |
| CGTATCATTAAGCCTTCTAA+GGG | 0.604610 | 1.4:+69211555 | None:intergenic |
| CATTACCAGTACCACCATAG+AGG | 0.605854 | 1.4:+69211659 | None:intergenic |
| TTCATAACATTAACCAACTG+AGG | 0.615039 | 1.4:+69211949 | None:intergenic |
| GTGATACCTCGAATGCGAGA+TGG | 0.615080 | 1.4:+69212485 | None:intergenic |
| AAGGTTGGCTGGTGTTGCAG+TGG | 0.615366 | 1.4:-69211476 | MS.gene07313:CDS |
| TTGAATCAGTATATAACCGA+AGG | 0.616050 | 1.4:-69212576 | MS.gene07313:CDS |
| TGTGCAGCTTTGAATGACAT+TGG | 0.616404 | 1.4:-69211874 | MS.gene07313:CDS |
| GCTCAGAACATGTACACATA+CGG | 0.618377 | 1.4:-69212120 | MS.gene07313:CDS |
| AGAAGGCTTAATGATACGGA+GGG | 0.620270 | 1.4:-69211550 | MS.gene07313:CDS |
| AAATAGCTATGATTGGTCAC+CGG | 0.622313 | 1.4:+69211592 | None:intergenic |
| AGTCTGGAGTACGCTCAAGA+AGG | 0.623685 | 1.4:-69211620 | MS.gene07313:CDS |
| TGCTTACTTGAGTCAAAACA+TGG | 0.625673 | 1.4:-69211452 | MS.gene07313:CDS |
| AGCTATGTCGATCTTTGAGA+AGG | 0.634352 | 1.4:-69211422 | MS.gene07313:CDS |
| AGTTGGTTAATGTTATGAAG+GGG | 0.635275 | 1.4:-69211945 | MS.gene07313:CDS |
| CACTTGTTGAGCCTCTATGG+TGG | 0.635576 | 1.4:-69211670 | MS.gene07313:CDS |
| TCACAACTTGTGGTGAAGGA+CGG | 0.645990 | 1.4:+69211266 | None:intergenic |
| GTGTACATGTTCTGAGCACG+AGG | 0.648813 | 1.4:+69212126 | None:intergenic |
| CAAGGGACTAATGCTAGACA+AGG | 0.652550 | 1.4:-69212076 | MS.gene07313:CDS |
| TAGAAGGCTTAATGATACGG+AGG | 0.655243 | 1.4:-69211551 | MS.gene07313:CDS |
| TCTTTGAGAAGGCTCTTAAG+CGG | 0.664916 | 1.4:-69211411 | MS.gene07313:CDS |
| ATCGCCGACTTCTGAAAGTG+CGG | 0.674194 | 1.4:+69211297 | None:intergenic |
| TACATGTTCTGAGCACGAGG+AGG | 0.707918 | 1.4:+69212129 | None:intergenic |
| AAACCTTTACCACAGACTAG+CGG | 0.734084 | 1.4:-69212634 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTATAATAATGTTTTGAA+TGG | - | chr1.4:69211425-69211444 | MS.gene07313:CDS | 15.0% |
| !! | CATAATAAAATAGCTATGAT+TGG | + | chr1.4:69212112-69212131 | None:intergenic | 20.0% |
| !!! | AATTTGATGGTTTTGTATAT+GGG | - | chr1.4:69211700-69211719 | MS.gene07313:CDS | 20.0% |
| ! | AAAAAAATATCCCTTGTCTA+TGG | + | chr1.4:69211377-69211396 | None:intergenic | 25.0% |
| ! | AAGACAAAGACAAAATTGAT+TGG | - | chr1.4:69211884-69211903 | MS.gene07313:CDS | 25.0% |
| ! | AATAACATTGTTTAAGGAGT+GGG | - | chr1.4:69212170-69212189 | MS.gene07313:CDS | 25.0% |
| ! | ATTGTTCATGCTGTATTTAT+TGG | - | chr1.4:69212335-69212354 | MS.gene07313:intron | 25.0% |
| ! | CATATACAAAACCATCAAAT+TGG | + | chr1.4:69211701-69211720 | None:intergenic | 25.0% |
| ! | GAAAATGACATAAAATGTGT+TGG | + | chr1.4:69211283-69211302 | None:intergenic | 25.0% |
| ! | TAATAACATTGTTTAAGGAG+TGG | - | chr1.4:69212169-69212188 | MS.gene07313:CDS | 25.0% |
| ! | TGTTAATTATGATACAAGGT+TGG | - | chr1.4:69212203-69212222 | MS.gene07313:CDS | 25.0% |
| ! | TTTGATAAGATGGATGAATT+AGG | - | chr1.4:69211652-69211671 | MS.gene07313:CDS | 25.0% |
| !! | ATTGTCTCTTTTTGATAAGA+TGG | - | chr1.4:69211642-69211661 | MS.gene07313:CDS | 25.0% |
| !!! | AGCTTGTTAATTATGATACA+AGG | - | chr1.4:69212199-69212218 | MS.gene07313:CDS | 25.0% |
| !!! | ATTTGATGGTTTTGTATATG+GGG | - | chr1.4:69211701-69211720 | MS.gene07313:CDS | 25.0% |
| !!! | CAATTTGATGGTTTTGTATA+TGG | - | chr1.4:69211699-69211718 | MS.gene07313:CDS | 25.0% |
| AATTCCTGAATCCTAAAGAA+AGG | + | chr1.4:69212318-69212337 | None:intergenic | 30.0% | |
| AGTAATGCAAGTTTCAATAC+AGG | + | chr1.4:69212544-69212563 | None:intergenic | 30.0% | |
| AGTTGGTTAATGTTATGAAG+GGG | - | chr1.4:69211749-69211768 | MS.gene07313:CDS | 30.0% | |
| ATTCATGACTTTCGAAAGAA+TGG | - | chr1.4:69211180-69211199 | MS.gene07313:CDS | 30.0% | |
| CAAAGCCTTAGATTAGAAAA+AGG | - | chr1.4:69211141-69211160 | MS.gene07313:CDS | 30.0% | |
| CAGTTGGTTAATGTTATGAA+GGG | - | chr1.4:69211748-69211767 | MS.gene07313:CDS | 30.0% | |
| CTGAATTTACATACACTGTT+TGG | - | chr1.4:69211788-69211807 | MS.gene07313:CDS | 30.0% | |
| GAAAAAGAGACAGATCTTAA+TGG | - | chr1.4:69212471-69212490 | MS.gene07313:intron | 30.0% | |
| GGGCATAATAACATTGTTTA+AGG | - | chr1.4:69212164-69212183 | MS.gene07313:CDS | 30.0% | |
| TCAGTTGGTTAATGTTATGA+AGG | - | chr1.4:69211747-69211766 | MS.gene07313:CDS | 30.0% | |
| TTAAACAGGTTTATAGAGTC+TGG | - | chr1.4:69212058-69212077 | MS.gene07313:CDS | 30.0% | |
| TTCATAACATTAACCAACTG+AGG | + | chr1.4:69211748-69211767 | None:intergenic | 30.0% | |
| TTGAATCAGTATATAACCGA+AGG | - | chr1.4:69211118-69211137 | MS.gene07313:CDS | 30.0% | |
| TTTGTCTTTCACCAATTTGA+TGG | - | chr1.4:69211687-69211706 | MS.gene07313:CDS | 30.0% | |
| ! | CTTTTATATAGATAGCAGCA+AGG | + | chr1.4:69211924-69211943 | None:intergenic | 30.0% |
| ! | GTTCACCTTTTTCTAATCTA+AGG | + | chr1.4:69211149-69211168 | None:intergenic | 30.0% |
| ! | TGATGATTAGTTATGAAGCA+CGG | + | chr1.4:69211345-69211364 | None:intergenic | 30.0% |
| ! | TTTTGAATGGTTGCAGATAA+TGG | - | chr1.4:69211438-69211457 | MS.gene07313:CDS | 30.0% |
| !! | TGGTATTCATCAAGTATTGA+AGG | - | chr1.4:69212581-69212600 | MS.gene07313:CDS | 30.0% |
| AATATCCCTTGTCTATGGAT+TGG | + | chr1.4:69211372-69211391 | None:intergenic | 35.0% | |
| AATTATGATACAAGGTTGGC+TGG | - | chr1.4:69212207-69212226 | MS.gene07313:CDS | 35.0% | |
| ACAATCCAATCCATAGACAA+GGG | - | chr1.4:69211364-69211383 | MS.gene07313:CDS | 35.0% | |
| ATGAGTTAAGCAAGATTCTC+AGG | - | chr1.4:69212499-69212518 | MS.gene07313:CDS | 35.0% | |
| CCTTAGAAGGCTTAATGATA+CGG | - | chr1.4:69212140-69212159 | MS.gene07313:CDS | 35.0% | |
| CGTATCATTAAGCCTTCTAA+GGG | + | chr1.4:69212142-69212161 | None:intergenic | 35.0% | |
| CTTCTAAACTGTTACTGCAA+GGG | - | chr1.4:69211601-69211620 | MS.gene07313:CDS | 35.0% | |
| GCTGCTATCTATATAAAAGC+TGG | - | chr1.4:69211925-69211944 | MS.gene07313:CDS | 35.0% | |
| TATCTTGTGTCCAAAGTGAA+AGG | - | chr1.4:69211508-69211527 | MS.gene07313:CDS | 35.0% | |
| TCTTCTAAACTGTTACTGCA+AGG | - | chr1.4:69211600-69211619 | MS.gene07313:CDS | 35.0% | |
| TGCTTACTTGAGTCAAAACA+TGG | - | chr1.4:69212242-69212261 | MS.gene07313:CDS | 35.0% | |
| TTATGCTTTCTACCCTTAGA+AGG | - | chr1.4:69212127-69212146 | MS.gene07313:CDS | 35.0% | |
| TTCAATCACTCCTTTCACTT+TGG | + | chr1.4:69211521-69211540 | None:intergenic | 35.0% | |
| TTGGAGATATGCCAATTGAA+TGG | - | chr1.4:69212354-69212373 | MS.gene07313:intron | 35.0% | |
| ! | AAATAGCTATGATTGGTCAC+CGG | + | chr1.4:69212105-69212124 | None:intergenic | 35.0% |
| ! | AACCAACTGAGGAACTTTTT+GGG | + | chr1.4:69211737-69211756 | None:intergenic | 35.0% |
| ! | ATGACATAAAATGTGTTGGC+AGG | + | chr1.4:69211279-69211298 | None:intergenic | 35.0% |
| ! | TAACCAACTGAGGAACTTTT+TGG | + | chr1.4:69211738-69211757 | None:intergenic | 35.0% |
| ! | TGACATAAAATGTGTTGGCA+GGG | + | chr1.4:69211278-69211297 | None:intergenic | 35.0% |
| !! | AAGCTGAGTTGATGCTTAAA+AGG | - | chr1.4:69211959-69211978 | MS.gene07313:CDS | 35.0% |
| !! | AATGGTTGCAGATAATGGAA+TGG | - | chr1.4:69211443-69211462 | MS.gene07313:CDS | 35.0% |
| !! | TGGTACTGGTAATGTTAAAC+AGG | - | chr1.4:69212044-69212063 | MS.gene07313:CDS | 35.0% |
| ACTGCATCTGAATCATCTCT+TGG | - | chr1.4:69212561-69212580 | MS.gene07313:CDS | 40.0% | |
| AGAAGGCTTAATGATACGGA+GGG | - | chr1.4:69212144-69212163 | MS.gene07313:CDS | 40.0% | |
| CACAATCCAATCCATAGACA+AGG | - | chr1.4:69211363-69211382 | MS.gene07313:CDS | 40.0% | |
| CCGTATCATTAAGCCTTCTA+AGG | + | chr1.4:69212143-69212162 | None:intergenic | 40.0% | |
| GCTCAGAACATGTACACATA+CGG | - | chr1.4:69211574-69211593 | MS.gene07313:CDS | 40.0% | |
| TAGAAGGCTTAATGATACGG+AGG | - | chr1.4:69212143-69212162 | MS.gene07313:CDS | 40.0% | |
| TAGTTATGAAGCACGGAAAG+CGG | + | chr1.4:69211338-69211357 | None:intergenic | 40.0% | |
| ! | ACCAACTGAGGAACTTTTTG+GGG | + | chr1.4:69211736-69211755 | None:intergenic | 40.0% |
| ! | AGCTATGTCGATCTTTGAGA+AGG | - | chr1.4:69212272-69212291 | MS.gene07313:intron | 40.0% |
| ! | CTAATCTAAGGCTTTGCCTT+CGG | + | chr1.4:69211137-69211156 | None:intergenic | 40.0% |
| ! | GACATAAAATGTGTTGGCAG+GGG | + | chr1.4:69211277-69211296 | None:intergenic | 40.0% |
| ! | TCTTTGAGAAGGCTCTTAAG+CGG | - | chr1.4:69212283-69212302 | MS.gene07313:intron | 40.0% |
| !! | AGAAAAGCACTCACAACTTG+TGG | + | chr1.4:69212441-69212460 | None:intergenic | 40.0% |
| !! | AGCTTTGAATGACATTGGTG+GGG | - | chr1.4:69211825-69211844 | MS.gene07313:CDS | 40.0% |
| !! | AGGACCTTTCTTTAGGATTC+AGG | - | chr1.4:69212311-69212330 | MS.gene07313:intron | 40.0% |
| !! | CAGCTTTGAATGACATTGGT+GGG | - | chr1.4:69211824-69211843 | MS.gene07313:CDS | 40.0% |
| !! | TGTGCAGCTTTGAATGACAT+TGG | - | chr1.4:69211820-69211839 | MS.gene07313:CDS | 40.0% |
| !!! | ATGGTTTTGTATATGGGGCT+AGG | - | chr1.4:69211706-69211725 | MS.gene07313:CDS | 40.0% |
| ACCCCAAAAAGTTCCTCAGT+TGG | - | chr1.4:69211732-69211751 | MS.gene07313:CDS | 45.0% | |
| ATGACATTGGTGGGGTTGAA+AGG | - | chr1.4:69211833-69211852 | MS.gene07313:CDS | 45.0% | |
| CAAGGGACTAATGCTAGACA+AGG | - | chr1.4:69211618-69211637 | MS.gene07313:CDS | 45.0% | |
| CATAGAGGCTCAACAAGTGA+TGG | + | chr1.4:69212023-69212042 | None:intergenic | 45.0% | |
| CATTACCAGTACCACCATAG+AGG | + | chr1.4:69212038-69212057 | None:intergenic | 45.0% | |
| CGGACACTAACATTTCGACA+CGG | + | chr1.4:69211318-69211337 | None:intergenic | 45.0% | |
| GGCTCATAGCACCATTCAAT+TGG | + | chr1.4:69212368-69212387 | None:intergenic | 45.0% | |
| GGTGTAGAGGACCTTTCTTT+AGG | - | chr1.4:69212304-69212323 | MS.gene07313:intron | 45.0% | |
| TCACAACTTGTGGTGAAGGA+CGG | + | chr1.4:69212431-69212450 | None:intergenic | 45.0% | |
| TGACATTGGTGGGGTTGAAA+GGG | - | chr1.4:69211834-69211853 | MS.gene07313:CDS | 45.0% | |
| TGGGGTTGAAAGGGTTTATG+AGG | - | chr1.4:69211843-69211862 | MS.gene07313:CDS | 45.0% | |
| ! | CATCACTTGTTGAGCCTCTA+TGG | - | chr1.4:69212021-69212040 | MS.gene07313:CDS | 45.0% |
| !! | GCAGCTTTGAATGACATTGG+TGG | - | chr1.4:69211823-69211842 | MS.gene07313:CDS | 45.0% |
| AAGGCTCTTAAGCGGTGTAG+AGG | - | chr1.4:69212291-69212310 | MS.gene07313:intron | 50.0% | |
| CAGATTCCATCTCGCATTCG+AGG | - | chr1.4:69211203-69211222 | MS.gene07313:CDS | 50.0% | |
| GAAGCCGCACTTTCAGAAGT+CGG | - | chr1.4:69212393-69212412 | MS.gene07313:intron | 50.0% | |
| GCACTCACAACTTGTGGTGA+AGG | + | chr1.4:69212435-69212454 | None:intergenic | 50.0% | |
| GTGATACCTCGAATGCGAGA+TGG | + | chr1.4:69211212-69211231 | None:intergenic | 50.0% | |
| TACGCTCAAGAAGGTCTCAC+CGG | - | chr1.4:69212083-69212102 | MS.gene07313:CDS | 50.0% | |
| TGGTAACTTTCGCGTTGCAC+TGG | + | chr1.4:69212003-69212022 | None:intergenic | 50.0% | |
| TTGAGCCTCTATGGTGGTAC+TGG | - | chr1.4:69212030-69212049 | MS.gene07313:CDS | 50.0% | |
| ! | AGTCTGGAGTACGCTCAAGA+AGG | - | chr1.4:69212074-69212093 | MS.gene07313:CDS | 50.0% |
| ! | CACTTGTTGAGCCTCTATGG+TGG | - | chr1.4:69212024-69212043 | MS.gene07313:CDS | 50.0% |
| ! | CTGAAAGTGCGGCTTCTAAG+TGG | + | chr1.4:69212389-69212408 | None:intergenic | 50.0% |
| ! | GTGTACATGTTCTGAGCACG+AGG | + | chr1.4:69211571-69211590 | None:intergenic | 50.0% |
| ! | TACATGTTCTGAGCACGAGG+AGG | + | chr1.4:69211568-69211587 | None:intergenic | 50.0% |
| !! | ATCGCCGACTTCTGAAAGTG+CGG | + | chr1.4:69212400-69212419 | None:intergenic | 50.0% |
| CGTCTGCGACACAGTTTCTC+CGG | + | chr1.4:69211098-69211117 | None:intergenic | 55.0% | |
| ! | CTAGCGGTGCTGGAAAAGAC+CGG | - | chr1.4:69211076-69211095 | MS.gene07313:CDS | 55.0% |
| !! | AAGGTTGGCTGGTGTTGCAG+TGG | - | chr1.4:69212218-69212237 | MS.gene07313:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69211075 | 69212641 | 69211075 | ID=MS.gene07313 |
| chr1.4 | mRNA | 69211075 | 69212641 | 69211075 | ID=MS.gene07313.t1;Parent=MS.gene07313 |
| chr1.4 | exon | 69212492 | 69212641 | 69212492 | ID=MS.gene07313.t1.exon1;Parent=MS.gene07313.t1 |
| chr1.4 | CDS | 69212492 | 69212641 | 69212492 | ID=cds.MS.gene07313.t1;Parent=MS.gene07313.t1 |
| chr1.4 | exon | 69211075 | 69212262 | 69211075 | ID=MS.gene07313.t1.exon2;Parent=MS.gene07313.t1 |
| chr1.4 | CDS | 69211075 | 69212262 | 69211075 | ID=cds.MS.gene07313.t1;Parent=MS.gene07313.t1 |
| Gene Sequence |
| Protein sequence |
