Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07317.t1 | RHN81020.1 | 80.1 | 397 | 74 | 2 | 1 | 394 | 145 | 539 | 3.30E-176 | 627.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07317.t1 | Q9FZ24 | 44.9 | 361 | 189 | 6 | 2 | 354 | 127 | 485 | 3.1e-82 | 307.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07317.t1 | G7ICW4 | 80.1 | 397 | 74 | 2 | 1 | 394 | 86 | 480 | 2.3e-176 | 627.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07317 | MS.gene056432 | PPI |
| MS.gene07317 | MS.gene067938 | PPI |
| MS.gene07317 | MS.gene068108 | PPI |
| MS.gene07317 | MS.gene014383 | PPI |
| MS.gene07317 | MS.gene52807 | PPI |
| MS.gene07317 | MS.gene064795 | PPI |
| MS.gene07317 | MS.gene008871 | PPI |
| MS.gene068116 | MS.gene07317 | PPI |
| MS.gene07317 | MS.gene69362 | PPI |
| MS.gene07317 | MS.gene067932 | PPI |
| MS.gene07317 | MS.gene068115 | PPI |
| MS.gene07317 | MS.gene008872 | PPI |
| MS.gene07317 | MS.gene008863 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07317.t1 | MTR_1g086820 | 80.101 | 397 | 74 | 2 | 1 | 394 | 86 | 480 | 0.0 | 650 |
| MS.gene07317.t1 | MTR_8g069570 | 39.186 | 393 | 224 | 7 | 14 | 394 | 94 | 483 | 8.67e-84 | 264 |
| MS.gene07317.t1 | MTR_8g007375 | 32.361 | 377 | 248 | 5 | 14 | 386 | 16 | 389 | 9.70e-54 | 183 |
| MS.gene07317.t1 | MTR_2g013450 | 28.070 | 399 | 266 | 8 | 2 | 385 | 84 | 476 | 1.53e-43 | 158 |
| MS.gene07317.t1 | MTR_1g072300 | 29.315 | 365 | 242 | 7 | 2 | 356 | 93 | 451 | 1.16e-41 | 153 |
| MS.gene07317.t1 | MTR_8g059115 | 27.457 | 346 | 247 | 3 | 13 | 356 | 14 | 357 | 6.49e-41 | 149 |
| MS.gene07317.t1 | MTR_2g047855 | 32.082 | 293 | 190 | 5 | 2 | 288 | 87 | 376 | 1.38e-40 | 150 |
| MS.gene07317.t1 | MTR_3g099753 | 28.614 | 332 | 231 | 4 | 13 | 340 | 108 | 437 | 1.45e-39 | 147 |
| MS.gene07317.t1 | MTR_3g099753 | 28.614 | 332 | 231 | 4 | 13 | 340 | 132 | 461 | 2.68e-39 | 147 |
| MS.gene07317.t1 | MTR_8g465890 | 28.977 | 352 | 237 | 6 | 2 | 344 | 83 | 430 | 2.19e-37 | 141 |
| MS.gene07317.t1 | MTR_2g090290 | 31.502 | 273 | 173 | 5 | 19 | 281 | 109 | 377 | 2.89e-33 | 130 |
| MS.gene07317.t1 | MTR_1g022400 | 29.242 | 277 | 186 | 7 | 13 | 281 | 125 | 399 | 1.46e-28 | 115 |
| MS.gene07317.t1 | MTR_8g031520 | 38.710 | 124 | 75 | 1 | 14 | 136 | 177 | 300 | 3.70e-17 | 81.6 |
| MS.gene07317.t1 | MTR_7g089770 | 23.184 | 358 | 252 | 12 | 2 | 350 | 212 | 555 | 1.51e-15 | 79.0 |
| MS.gene07317.t1 | MTR_2g096880 | 24.895 | 237 | 172 | 4 | 13 | 247 | 114 | 346 | 1.30e-13 | 72.8 |
| MS.gene07317.t1 | MTR_1g050750 | 25.911 | 247 | 176 | 5 | 13 | 256 | 161 | 403 | 9.16e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07317.t1 | AT1G02370 | 44.875 | 361 | 189 | 6 | 2 | 354 | 127 | 485 | 2.11e-103 | 316 |
| MS.gene07317.t1 | AT4G01990 | 44.413 | 358 | 191 | 5 | 2 | 354 | 96 | 450 | 5.10e-99 | 303 |
| MS.gene07317.t1 | AT1G60770 | 37.592 | 407 | 237 | 9 | 1 | 394 | 81 | 483 | 1.81e-80 | 255 |
| MS.gene07317.t1 | AT1G02150 | 33.430 | 344 | 225 | 3 | 14 | 355 | 140 | 481 | 2.92e-57 | 196 |
| MS.gene07317.t1 | AT5G27460 | 31.921 | 354 | 229 | 6 | 1 | 344 | 93 | 444 | 1.14e-48 | 172 |
| MS.gene07317.t1 | AT4G21705 | 30.959 | 365 | 237 | 8 | 2 | 356 | 81 | 440 | 6.94e-48 | 170 |
| MS.gene07317.t1 | AT2G20710 | 30.523 | 344 | 231 | 5 | 14 | 355 | 15 | 352 | 1.68e-46 | 164 |
| MS.gene07317.t1 | AT2G20710 | 30.523 | 344 | 231 | 5 | 14 | 355 | 110 | 447 | 1.52e-45 | 164 |
| MS.gene07317.t1 | AT4G02820 | 27.960 | 397 | 265 | 8 | 2 | 385 | 117 | 505 | 4.99e-40 | 149 |
| MS.gene07317.t1 | AT5G09450 | 32.932 | 249 | 154 | 7 | 13 | 253 | 126 | 369 | 9.46e-32 | 124 |
| MS.gene07317.t1 | AT1G28020 | 30.357 | 280 | 185 | 6 | 2 | 273 | 92 | 369 | 3.39e-29 | 119 |
| MS.gene07317.t1 | AT1G80270 | 23.762 | 404 | 270 | 14 | 2 | 385 | 184 | 569 | 1.28e-17 | 85.1 |
| MS.gene07317.t1 | AT1G80270 | 23.762 | 404 | 270 | 14 | 2 | 385 | 184 | 569 | 1.28e-17 | 85.1 |
| MS.gene07317.t1 | AT1G80270 | 23.762 | 404 | 270 | 14 | 2 | 385 | 184 | 569 | 1.28e-17 | 85.1 |
| MS.gene07317.t1 | AT1G80270 | 23.762 | 404 | 270 | 14 | 2 | 385 | 184 | 569 | 1.28e-17 | 85.1 |
| MS.gene07317.t1 | AT1G80270 | 23.762 | 404 | 270 | 14 | 2 | 385 | 184 | 569 | 1.28e-17 | 85.1 |
| MS.gene07317.t1 | AT3G15590 | 30.653 | 199 | 129 | 5 | 12 | 207 | 211 | 403 | 2.58e-15 | 78.2 |
| MS.gene07317.t1 | AT3G15590 | 30.653 | 199 | 129 | 5 | 12 | 207 | 211 | 403 | 2.58e-15 | 78.2 |
| MS.gene07317.t1 | AT3G11380 | 26.389 | 288 | 171 | 6 | 2 | 281 | 99 | 353 | 2.75e-15 | 77.8 |
| MS.gene07317.t1 | AT1G15480 | 26.201 | 229 | 161 | 5 | 13 | 238 | 197 | 420 | 1.36e-14 | 75.9 |
| MS.gene07317.t1 | AT1G07590 | 23.345 | 287 | 206 | 6 | 1 | 279 | 120 | 400 | 7.69e-13 | 70.5 |
Find 73 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCATAATAACATTGTTTA+AGG | 0.231511 | 1.4:-69183235 | MS.gene07317:CDS |
| AGGACCTTTCTTTAGGATTC+AGG | 0.243843 | 1.4:-69183088 | MS.gene07317:CDS |
| CCGTATCATTAAGCCTTCTA+AGG | 0.261570 | 1.4:+69183259 | None:intergenic |
| AAGCTGAGTTGATGCTTAAA+AGG | 0.266289 | 1.4:-69183440 | MS.gene07317:CDS |
| ATTGTTCATGCTGTATTTAT+TGG | 0.275275 | 1.4:-69183064 | MS.gene07317:CDS |
| TTTGATAAGATGGATGAATT+AGG | 0.276635 | 1.4:-69183747 | MS.gene07317:CDS |
| CATCACTTGTTGAGCCTCTA+TGG | 0.288847 | 1.4:-69183378 | MS.gene07317:CDS |
| TTTGTCTTTCACCAATTTGA+TGG | 0.304398 | 1.4:-69183712 | MS.gene07317:CDS |
| TTATGCTTTCTACCCTTAGA+AGG | 0.334013 | 1.4:-69183272 | MS.gene07317:CDS |
| CATATACAAAACCATCAAAT+TGG | 0.348712 | 1.4:+69183701 | None:intergenic |
| GGTGTAGAGGACCTTTCTTT+AGG | 0.358064 | 1.4:-69183095 | MS.gene07317:CDS |
| CTGAATTTACATACACTGTT+TGG | 0.374347 | 1.4:-69183611 | MS.gene07317:CDS |
| TTAAACAGGTTTATAGAGTC+TGG | 0.387267 | 1.4:-69183341 | MS.gene07317:CDS |
| TGGTACTGGTAATGTTAAAC+AGG | 0.422414 | 1.4:-69183355 | MS.gene07317:CDS |
| CAGCTTTGAATGACATTGGT+GGG | 0.429431 | 1.4:-69183575 | MS.gene07317:CDS |
| AAGACAAAGACAAAATTGAT+TGG | 0.437683 | 1.4:-69183515 | MS.gene07317:CDS |
| AGTAATGCAAGTTTCAATAC+AGG | 0.442716 | 1.4:+69182858 | None:intergenic |
| GGCTCATAGCACCATTCAAT+TGG | 0.443758 | 1.4:+69183034 | None:intergenic |
| TCAGTTGGTTAATGTTATGA+AGG | 0.445036 | 1.4:-69183652 | MS.gene07317:CDS |
| TGGGGTTGAAAGGGTTTATG+AGG | 0.447556 | 1.4:-69183556 | MS.gene07317:CDS |
| ATGAGTTAAGCAAGATTCTC+AGG | 0.451952 | 1.4:-69182900 | MS.gene07317:CDS |
| CATAATAAAATAGCTATGAT+TGG | 0.458064 | 1.4:+69183290 | None:intergenic |
| ATGACATTGGTGGGGTTGAA+AGG | 0.462059 | 1.4:-69183566 | MS.gene07317:CDS |
| TTGAGCCTCTATGGTGGTAC+TGG | 0.464901 | 1.4:-69183369 | MS.gene07317:CDS |
| TGGTATTCATCAAGTATTGA+AGG | 0.467131 | 1.4:-69182818 | MS.gene07317:CDS |
| TGACATTGGTGGGGTTGAAA+GGG | 0.469956 | 1.4:-69183565 | MS.gene07317:CDS |
| AATAACATTGTTTAAGGAGT+GGG | 0.471012 | 1.4:-69183229 | MS.gene07317:CDS |
| TGGTAACTTTCGCGTTGCAC+TGG | 0.472277 | 1.4:+69183399 | None:intergenic |
| TTCAATCACTCCTTTCACTT+TGG | 0.474139 | 1.4:+69183881 | None:intergenic |
| AGCTTGTTAATTATGATACA+AGG | 0.497708 | 1.4:-69183200 | MS.gene07317:CDS |
| GCTGCTATCTATATAAAAGC+TGG | 0.505469 | 1.4:-69183474 | MS.gene07317:CDS |
| ACTGCATCTGAATCATCTCT+TGG | 0.510797 | 1.4:-69182838 | MS.gene07317:CDS |
| CCTTAGAAGGCTTAATGATA+CGG | 0.522341 | 1.4:-69183259 | MS.gene07317:CDS |
| AATTATGATACAAGGTTGGC+TGG | 0.523312 | 1.4:-69183192 | MS.gene07317:CDS |
| TTGGAGATATGCCAATTGAA+TGG | 0.531282 | 1.4:-69183045 | MS.gene07317:CDS |
| AATTCCTGAATCCTAAAGAA+AGG | 0.537404 | 1.4:+69183084 | None:intergenic |
| TGTTAATTATGATACAAGGT+TGG | 0.541417 | 1.4:-69183196 | MS.gene07317:CDS |
| GTTACAAGTTCTCGTGTGCA+TGG | 0.545024 | 1.4:+69182779 | None:intergenic |
| CAGTTGGTTAATGTTATGAA+GGG | 0.560663 | 1.4:-69183651 | MS.gene07317:CDS |
| AGAAAAGCACTCACAACTTG+TGG | 0.563214 | 1.4:+69182961 | None:intergenic |
| GCAGCTTTGAATGACATTGG+TGG | 0.569276 | 1.4:-69183576 | MS.gene07317:CDS |
| AGCTTTGAATGACATTGGTG+GGG | 0.572390 | 1.4:-69183574 | MS.gene07317:CDS |
| CTTCTAAACTGTTACTGCAA+GGG | 0.573008 | 1.4:-69183798 | MS.gene07317:CDS |
| GCACTCACAACTTGTGGTGA+AGG | 0.577944 | 1.4:+69182967 | None:intergenic |
| TAATAACATTGTTTAAGGAG+TGG | 0.580243 | 1.4:-69183230 | MS.gene07317:CDS |
| TATCTTGTGTCCAAAGTGAA+AGG | 0.580372 | 1.4:-69183891 | MS.gene07317:CDS |
| TACGCTCAAGAAGGTCTCAC+CGG | 0.582181 | 1.4:-69183316 | MS.gene07317:CDS |
| GAAGCCGCACTTTCAGAAGT+CGG | 0.583270 | 1.4:-69183006 | MS.gene07317:CDS |
| TCTTCTAAACTGTTACTGCA+AGG | 0.585829 | 1.4:-69183799 | MS.gene07317:CDS |
| AATGGTTGCAGATAATGGAA+TGG | 0.590967 | 1.4:-69183956 | None:intergenic |
| AAGGCTCTTAAGCGGTGTAG+AGG | 0.591462 | 1.4:-69183108 | MS.gene07317:CDS |
| CTGAAAGTGCGGCTTCTAAG+TGG | 0.596496 | 1.4:+69183013 | None:intergenic |
| CATAGAGGCTCAACAAGTGA+TGG | 0.603610 | 1.4:+69183379 | None:intergenic |
| CGTATCATTAAGCCTTCTAA+GGG | 0.604610 | 1.4:+69183260 | None:intergenic |
| CATTACCAGTACCACCATAG+AGG | 0.605854 | 1.4:+69183364 | None:intergenic |
| TTCATAACATTAACCAACTG+AGG | 0.615039 | 1.4:+69183654 | None:intergenic |
| AAGGTTGGCTGGTGTTGCAG+TGG | 0.615366 | 1.4:-69183181 | MS.gene07317:CDS |
| TGTGCAGCTTTGAATGACAT+TGG | 0.616404 | 1.4:-69183579 | MS.gene07317:CDS |
| GCTCAGAACATGTACACATA+CGG | 0.618377 | 1.4:-69183825 | MS.gene07317:CDS |
| AGAAGGCTTAATGATACGGA+GGG | 0.620270 | 1.4:-69183255 | MS.gene07317:CDS |
| AAATAGCTATGATTGGTCAC+CGG | 0.622313 | 1.4:+69183297 | None:intergenic |
| AGTCTGGAGTACGCTCAAGA+AGG | 0.623685 | 1.4:-69183325 | MS.gene07317:CDS |
| TGCTTACTTGAGTCAAAACA+TGG | 0.625673 | 1.4:-69183157 | MS.gene07317:CDS |
| AGCTATGTCGATCTTTGAGA+AGG | 0.634352 | 1.4:-69183127 | MS.gene07317:CDS |
| AGTTGGTTAATGTTATGAAG+GGG | 0.635275 | 1.4:-69183650 | MS.gene07317:CDS |
| CACTTGTTGAGCCTCTATGG+TGG | 0.635576 | 1.4:-69183375 | MS.gene07317:CDS |
| TCACAACTTGTGGTGAAGGA+CGG | 0.645990 | 1.4:+69182971 | None:intergenic |
| GTGTACATGTTCTGAGCACG+AGG | 0.648813 | 1.4:+69183831 | None:intergenic |
| CAAGGGACTAATGCTAGACA+AGG | 0.652550 | 1.4:-69183781 | MS.gene07317:CDS |
| TAGAAGGCTTAATGATACGG+AGG | 0.655243 | 1.4:-69183256 | MS.gene07317:CDS |
| TCTTTGAGAAGGCTCTTAAG+CGG | 0.664916 | 1.4:-69183116 | MS.gene07317:CDS |
| ATCGCCGACTTCTGAAAGTG+CGG | 0.674194 | 1.4:+69183002 | None:intergenic |
| TACATGTTCTGAGCACGAGG+AGG | 0.707918 | 1.4:+69183834 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAAAATAGCTATGAT+TGG | + | chr1.4:69183435-69183454 | None:intergenic | 20.0% |
| !!! | AATTTGATGGTTTTGTATAT+GGG | - | chr1.4:69183023-69183042 | MS.gene07317:CDS | 20.0% |
| ! | AAGACAAAGACAAAATTGAT+TGG | - | chr1.4:69183207-69183226 | MS.gene07317:CDS | 25.0% |
| ! | AATAACATTGTTTAAGGAGT+GGG | - | chr1.4:69183493-69183512 | MS.gene07317:CDS | 25.0% |
| ! | ATTGTTCATGCTGTATTTAT+TGG | - | chr1.4:69183658-69183677 | MS.gene07317:CDS | 25.0% |
| ! | CATATACAAAACCATCAAAT+TGG | + | chr1.4:69183024-69183043 | None:intergenic | 25.0% |
| ! | TAATAACATTGTTTAAGGAG+TGG | - | chr1.4:69183492-69183511 | MS.gene07317:CDS | 25.0% |
| ! | TGTTAATTATGATACAAGGT+TGG | - | chr1.4:69183526-69183545 | MS.gene07317:CDS | 25.0% |
| ! | TTTGATAAGATGGATGAATT+AGG | - | chr1.4:69182975-69182994 | MS.gene07317:CDS | 25.0% |
| !! | ATTGTCTCTTTTTGATAAGA+TGG | - | chr1.4:69182965-69182984 | MS.gene07317:CDS | 25.0% |
| !!! | AGCTTGTTAATTATGATACA+AGG | - | chr1.4:69183522-69183541 | MS.gene07317:CDS | 25.0% |
| !!! | ATTTGATGGTTTTGTATATG+GGG | - | chr1.4:69183024-69183043 | MS.gene07317:CDS | 25.0% |
| !!! | CAATTTGATGGTTTTGTATA+TGG | - | chr1.4:69183022-69183041 | MS.gene07317:CDS | 25.0% |
| AATTCCTGAATCCTAAAGAA+AGG | + | chr1.4:69183641-69183660 | None:intergenic | 30.0% | |
| AGTAATGCAAGTTTCAATAC+AGG | + | chr1.4:69183867-69183886 | None:intergenic | 30.0% | |
| AGTTGGTTAATGTTATGAAG+GGG | - | chr1.4:69183072-69183091 | MS.gene07317:CDS | 30.0% | |
| CAGTTGGTTAATGTTATGAA+GGG | - | chr1.4:69183071-69183090 | MS.gene07317:CDS | 30.0% | |
| CTGAATTTACATACACTGTT+TGG | - | chr1.4:69183111-69183130 | MS.gene07317:CDS | 30.0% | |
| GAAAAAGAGACAGATCTTAA+TGG | - | chr1.4:69183794-69183813 | MS.gene07317:CDS | 30.0% | |
| GGGCATAATAACATTGTTTA+AGG | - | chr1.4:69183487-69183506 | MS.gene07317:CDS | 30.0% | |
| TCAGTTGGTTAATGTTATGA+AGG | - | chr1.4:69183070-69183089 | MS.gene07317:CDS | 30.0% | |
| TTAAACAGGTTTATAGAGTC+TGG | - | chr1.4:69183381-69183400 | MS.gene07317:CDS | 30.0% | |
| TTCATAACATTAACCAACTG+AGG | + | chr1.4:69183071-69183090 | None:intergenic | 30.0% | |
| TTTGTCTTTCACCAATTTGA+TGG | - | chr1.4:69183010-69183029 | MS.gene07317:CDS | 30.0% | |
| ! | CTTTTATATAGATAGCAGCA+AGG | + | chr1.4:69183247-69183266 | None:intergenic | 30.0% |
| !! | TGGTATTCATCAAGTATTGA+AGG | - | chr1.4:69183904-69183923 | MS.gene07317:CDS | 30.0% |
| AATTATGATACAAGGTTGGC+TGG | - | chr1.4:69183530-69183549 | MS.gene07317:CDS | 35.0% | |
| ATGAGTTAAGCAAGATTCTC+AGG | - | chr1.4:69183822-69183841 | MS.gene07317:CDS | 35.0% | |
| CCTTAGAAGGCTTAATGATA+CGG | - | chr1.4:69183463-69183482 | MS.gene07317:CDS | 35.0% | |
| CGTATCATTAAGCCTTCTAA+GGG | + | chr1.4:69183465-69183484 | None:intergenic | 35.0% | |
| CTTCTAAACTGTTACTGCAA+GGG | - | chr1.4:69182924-69182943 | MS.gene07317:CDS | 35.0% | |
| GCTGCTATCTATATAAAAGC+TGG | - | chr1.4:69183248-69183267 | MS.gene07317:CDS | 35.0% | |
| TATCTTGTGTCCAAAGTGAA+AGG | - | chr1.4:69182831-69182850 | MS.gene07317:CDS | 35.0% | |
| TCTTCTAAACTGTTACTGCA+AGG | - | chr1.4:69182923-69182942 | MS.gene07317:CDS | 35.0% | |
| TGCTTACTTGAGTCAAAACA+TGG | - | chr1.4:69183565-69183584 | MS.gene07317:CDS | 35.0% | |
| TTATGCTTTCTACCCTTAGA+AGG | - | chr1.4:69183450-69183469 | MS.gene07317:CDS | 35.0% | |
| TTCAATCACTCCTTTCACTT+TGG | + | chr1.4:69182844-69182863 | None:intergenic | 35.0% | |
| TTGGAGATATGCCAATTGAA+TGG | - | chr1.4:69183677-69183696 | MS.gene07317:CDS | 35.0% | |
| ! | AAATAGCTATGATTGGTCAC+CGG | + | chr1.4:69183428-69183447 | None:intergenic | 35.0% |
| ! | AACCAACTGAGGAACTTTTT+GGG | + | chr1.4:69183060-69183079 | None:intergenic | 35.0% |
| ! | TAACCAACTGAGGAACTTTT+TGG | + | chr1.4:69183061-69183080 | None:intergenic | 35.0% |
| !! | AAGCTGAGTTGATGCTTAAA+AGG | - | chr1.4:69183282-69183301 | MS.gene07317:CDS | 35.0% |
| !! | TGGTACTGGTAATGTTAAAC+AGG | - | chr1.4:69183367-69183386 | MS.gene07317:CDS | 35.0% |
| ACTGCATCTGAATCATCTCT+TGG | - | chr1.4:69183884-69183903 | MS.gene07317:CDS | 40.0% | |
| AGAAGGCTTAATGATACGGA+GGG | - | chr1.4:69183467-69183486 | MS.gene07317:CDS | 40.0% | |
| CCGTATCATTAAGCCTTCTA+AGG | + | chr1.4:69183466-69183485 | None:intergenic | 40.0% | |
| GCTCAGAACATGTACACATA+CGG | - | chr1.4:69182897-69182916 | MS.gene07317:CDS | 40.0% | |
| TAGAAGGCTTAATGATACGG+AGG | - | chr1.4:69183466-69183485 | MS.gene07317:CDS | 40.0% | |
| ! | ACCAACTGAGGAACTTTTTG+GGG | + | chr1.4:69183059-69183078 | None:intergenic | 40.0% |
| ! | AGCTATGTCGATCTTTGAGA+AGG | - | chr1.4:69183595-69183614 | MS.gene07317:CDS | 40.0% |
| ! | TCTTTGAGAAGGCTCTTAAG+CGG | - | chr1.4:69183606-69183625 | MS.gene07317:CDS | 40.0% |
| !! | AGAAAAGCACTCACAACTTG+TGG | + | chr1.4:69183764-69183783 | None:intergenic | 40.0% |
| !! | AGCTTTGAATGACATTGGTG+GGG | - | chr1.4:69183148-69183167 | MS.gene07317:CDS | 40.0% |
| !! | AGGACCTTTCTTTAGGATTC+AGG | - | chr1.4:69183634-69183653 | MS.gene07317:CDS | 40.0% |
| !! | CAGCTTTGAATGACATTGGT+GGG | - | chr1.4:69183147-69183166 | MS.gene07317:CDS | 40.0% |
| !! | TGTGCAGCTTTGAATGACAT+TGG | - | chr1.4:69183143-69183162 | MS.gene07317:CDS | 40.0% |
| !!! | ATGGTTTTGTATATGGGGCT+AGG | - | chr1.4:69183029-69183048 | MS.gene07317:CDS | 40.0% |
| ACCCCAAAAAGTTCCTCAGT+TGG | - | chr1.4:69183055-69183074 | MS.gene07317:CDS | 45.0% | |
| ATGACATTGGTGGGGTTGAA+AGG | - | chr1.4:69183156-69183175 | MS.gene07317:CDS | 45.0% | |
| CAAGGGACTAATGCTAGACA+AGG | - | chr1.4:69182941-69182960 | MS.gene07317:CDS | 45.0% | |
| CATAGAGGCTCAACAAGTGA+TGG | + | chr1.4:69183346-69183365 | None:intergenic | 45.0% | |
| CATTACCAGTACCACCATAG+AGG | + | chr1.4:69183361-69183380 | None:intergenic | 45.0% | |
| GGCTCATAGCACCATTCAAT+TGG | + | chr1.4:69183691-69183710 | None:intergenic | 45.0% | |
| GGTGTAGAGGACCTTTCTTT+AGG | - | chr1.4:69183627-69183646 | MS.gene07317:CDS | 45.0% | |
| TCACAACTTGTGGTGAAGGA+CGG | + | chr1.4:69183754-69183773 | None:intergenic | 45.0% | |
| TGACATTGGTGGGGTTGAAA+GGG | - | chr1.4:69183157-69183176 | MS.gene07317:CDS | 45.0% | |
| TGGGGTTGAAAGGGTTTATG+AGG | - | chr1.4:69183166-69183185 | MS.gene07317:CDS | 45.0% | |
| ! | CATCACTTGTTGAGCCTCTA+TGG | - | chr1.4:69183344-69183363 | MS.gene07317:CDS | 45.0% |
| !! | GCAGCTTTGAATGACATTGG+TGG | - | chr1.4:69183146-69183165 | MS.gene07317:CDS | 45.0% |
| AAGGCTCTTAAGCGGTGTAG+AGG | - | chr1.4:69183614-69183633 | MS.gene07317:CDS | 50.0% | |
| GAAGCCGCACTTTCAGAAGT+CGG | - | chr1.4:69183716-69183735 | MS.gene07317:CDS | 50.0% | |
| GCACTCACAACTTGTGGTGA+AGG | + | chr1.4:69183758-69183777 | None:intergenic | 50.0% | |
| TACGCTCAAGAAGGTCTCAC+CGG | - | chr1.4:69183406-69183425 | MS.gene07317:CDS | 50.0% | |
| TGGTAACTTTCGCGTTGCAC+TGG | + | chr1.4:69183326-69183345 | None:intergenic | 50.0% | |
| TTGAGCCTCTATGGTGGTAC+TGG | - | chr1.4:69183353-69183372 | MS.gene07317:CDS | 50.0% | |
| ! | AGTCTGGAGTACGCTCAAGA+AGG | - | chr1.4:69183397-69183416 | MS.gene07317:CDS | 50.0% |
| ! | CACTTGTTGAGCCTCTATGG+TGG | - | chr1.4:69183347-69183366 | MS.gene07317:CDS | 50.0% |
| ! | CTGAAAGTGCGGCTTCTAAG+TGG | + | chr1.4:69183712-69183731 | None:intergenic | 50.0% |
| ! | GTGTACATGTTCTGAGCACG+AGG | + | chr1.4:69182894-69182913 | None:intergenic | 50.0% |
| ! | TACATGTTCTGAGCACGAGG+AGG | + | chr1.4:69182891-69182910 | None:intergenic | 50.0% |
| !! | ATCGCCGACTTCTGAAAGTG+CGG | + | chr1.4:69183723-69183742 | None:intergenic | 50.0% |
| !! | AAGGTTGGCTGGTGTTGCAG+TGG | - | chr1.4:69183541-69183560 | MS.gene07317:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69182780 | 69183964 | 69182780 | ID=MS.gene07317 |
| chr1.4 | mRNA | 69182780 | 69183964 | 69182780 | ID=MS.gene07317.t1;Parent=MS.gene07317 |
| chr1.4 | exon | 69182780 | 69183964 | 69182780 | ID=MS.gene07317.t1.exon1;Parent=MS.gene07317.t1 |
| chr1.4 | CDS | 69182780 | 69183964 | 69182780 | ID=cds.MS.gene07317.t1;Parent=MS.gene07317.t1 |
| Gene Sequence |
| Protein sequence |
