Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073796.t1 | XP_024634476.1 | 96.6 | 265 | 9 | 0 | 24 | 288 | 34 | 298 | 3.00E-142 | 514.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073796.t1 | Q8RWU3 | 65.7 | 268 | 83 | 4 | 25 | 284 | 31 | 297 | 3.5e-91 | 336.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073796.t1 | A0A072VW35 | 96.6 | 265 | 9 | 0 | 24 | 288 | 34 | 298 | 2.1e-142 | 514.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene073796.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050702 | MS.gene073796 | 0.827871 | 1.23E-54 | -1.69E-46 |
MS.gene061218 | MS.gene073796 | 0.802309 | 5.96E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073796.t1 | MTR_1g067000 | 96.875 | 288 | 9 | 0 | 1 | 288 | 11 | 298 | 0.0 | 579 |
MS.gene073796.t1 | MTR_0123s0070 | 54.275 | 269 | 109 | 5 | 7 | 265 | 18 | 282 | 2.82e-88 | 266 |
MS.gene073796.t1 | MTR_0123s0070 | 54.826 | 259 | 103 | 5 | 7 | 255 | 18 | 272 | 1.75e-85 | 258 |
MS.gene073796.t1 | MTR_8g028655 | 51.711 | 263 | 111 | 4 | 25 | 272 | 52 | 313 | 2.90e-84 | 256 |
MS.gene073796.t1 | MTR_6g477860 | 56.250 | 112 | 38 | 2 | 18 | 118 | 38 | 149 | 2.51e-26 | 107 |
MS.gene073796.t1 | MTR_3g064500 | 57.143 | 98 | 34 | 1 | 26 | 115 | 46 | 143 | 4.78e-26 | 105 |
MS.gene073796.t1 | MTR_5g076960 | 55.856 | 111 | 36 | 3 | 18 | 120 | 24 | 129 | 5.93e-25 | 103 |
MS.gene073796.t1 | MTR_7g118330 | 57.143 | 70 | 30 | 0 | 18 | 87 | 7 | 76 | 7.87e-23 | 98.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073796.t1 | AT3G09600 | 67.050 | 261 | 79 | 3 | 11 | 265 | 17 | 276 | 3.46e-126 | 362 |
MS.gene073796.t1 | AT3G09600 | 67.050 | 261 | 79 | 3 | 11 | 265 | 17 | 276 | 3.46e-126 | 362 |
MS.gene073796.t1 | AT3G09600 | 66.171 | 269 | 78 | 4 | 11 | 273 | 17 | 278 | 2.20e-123 | 354 |
MS.gene073796.t1 | AT3G09600 | 66.171 | 269 | 78 | 4 | 11 | 273 | 17 | 278 | 2.20e-123 | 354 |
MS.gene073796.t1 | AT3G09600 | 68.526 | 251 | 72 | 3 | 11 | 255 | 17 | 266 | 2.47e-123 | 353 |
MS.gene073796.t1 | AT5G02840 | 64.706 | 255 | 77 | 4 | 20 | 263 | 31 | 283 | 1.73e-112 | 326 |
MS.gene073796.t1 | AT5G02840 | 62.452 | 261 | 85 | 4 | 20 | 269 | 31 | 289 | 2.23e-110 | 321 |
MS.gene073796.t1 | AT5G02840 | 62.452 | 261 | 85 | 4 | 20 | 269 | 31 | 289 | 2.23e-110 | 321 |
MS.gene073796.t1 | AT3G09600 | 65.899 | 217 | 67 | 3 | 55 | 265 | 5 | 220 | 1.37e-100 | 295 |
MS.gene073796.t1 | AT3G09600 | 65.899 | 217 | 67 | 3 | 55 | 265 | 5 | 220 | 1.37e-100 | 295 |
MS.gene073796.t1 | AT3G09600 | 64.889 | 225 | 66 | 4 | 55 | 273 | 5 | 222 | 8.62e-98 | 287 |
MS.gene073796.t1 | AT3G09600 | 64.889 | 225 | 66 | 4 | 55 | 273 | 5 | 222 | 8.62e-98 | 287 |
MS.gene073796.t1 | AT5G02840 | 63.913 | 230 | 70 | 4 | 20 | 238 | 31 | 258 | 1.50e-97 | 288 |
MS.gene073796.t1 | AT5G02840 | 63.478 | 230 | 71 | 4 | 20 | 238 | 31 | 258 | 4.00e-97 | 287 |
MS.gene073796.t1 | AT5G52660 | 53.571 | 280 | 120 | 4 | 10 | 281 | 45 | 322 | 1.07e-88 | 268 |
MS.gene073796.t1 | AT5G52660 | 51.957 | 281 | 124 | 4 | 10 | 281 | 45 | 323 | 1.16e-87 | 265 |
MS.gene073796.t1 | AT1G01520 | 55.000 | 260 | 93 | 6 | 16 | 265 | 40 | 285 | 5.15e-85 | 256 |
MS.gene073796.t1 | AT4G01280 | 51.636 | 275 | 110 | 6 | 7 | 264 | 29 | 297 | 1.84e-83 | 253 |
MS.gene073796.t1 | AT1G01520 | 56.000 | 250 | 86 | 6 | 16 | 255 | 40 | 275 | 1.40e-82 | 250 |
MS.gene073796.t1 | AT4G01280 | 51.460 | 274 | 111 | 7 | 7 | 264 | 29 | 296 | 2.29e-82 | 250 |
MS.gene073796.t1 | AT1G01520 | 54.506 | 233 | 82 | 6 | 16 | 238 | 40 | 258 | 7.75e-72 | 222 |
MS.gene073796.t1 | AT1G01520 | 54.506 | 233 | 82 | 6 | 16 | 238 | 40 | 258 | 7.75e-72 | 222 |
MS.gene073796.t1 | AT5G17300 | 55.000 | 100 | 37 | 1 | 19 | 110 | 37 | 136 | 1.66e-27 | 110 |
MS.gene073796.t1 | AT5G37260 | 56.701 | 97 | 38 | 1 | 18 | 110 | 17 | 113 | 1.85e-26 | 105 |
MS.gene073796.t1 | AT1G01520 | 71.429 | 63 | 18 | 0 | 203 | 265 | 139 | 201 | 2.90e-26 | 102 |
MS.gene073796.t1 | AT1G18330 | 55.319 | 94 | 34 | 2 | 26 | 111 | 39 | 132 | 2.04e-24 | 101 |
MS.gene073796.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.24e-24 | 103 |
MS.gene073796.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.24e-24 | 103 |
MS.gene073796.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.24e-24 | 103 |
MS.gene073796.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.24e-24 | 103 |
MS.gene073796.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.24e-24 | 103 |
MS.gene073796.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.26e-24 | 103 |
MS.gene073796.t1 | AT3G10113 | 55.319 | 94 | 34 | 2 | 26 | 111 | 54 | 147 | 3.50e-24 | 100 |
MS.gene073796.t1 | AT1G18330 | 55.319 | 94 | 34 | 2 | 26 | 111 | 65 | 158 | 3.87e-24 | 100 |
MS.gene073796.t1 | AT2G46830 | 59.722 | 72 | 29 | 0 | 16 | 87 | 3 | 74 | 2.47e-23 | 100 |
Find 61 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTACAATGGGATCAAAATT+AGG | 0.151868 | 1.3:+46933749 | None:intergenic |
CTACCAGCATCCATTGCTTT+TGG | 0.209435 | 1.3:-46937845 | MS.gene073796:CDS |
CCGGACTTTGCTGAAGTTTA+CGG | 0.260906 | 1.3:-46937088 | MS.gene073796:CDS |
TGAGTTAGAATTAGAGTTCA+TGG | 0.279860 | 1.3:+46938916 | None:intergenic |
CTCACAGTTTCAAAGTTTAT+AGG | 0.310240 | 1.3:+46937001 | None:intergenic |
TGGCTCTAAAACAGTTATTC+AGG | 0.322186 | 1.3:-46938625 | MS.gene073796:intron |
CTTGACTTGGTAATTGTGTA+AGG | 0.342024 | 1.3:+46938827 | None:intergenic |
TCACAGTTTCAAAGTTTATA+GGG | 0.345459 | 1.3:+46937002 | None:intergenic |
ACGATATTTAACAGGTTTGC+CGG | 0.354143 | 1.3:-46937107 | MS.gene073796:intron |
TTACAATGGGATCAAAATTA+GGG | 0.364435 | 1.3:+46933750 | None:intergenic |
CTAGTTGTTGTAGTTGTTGT+TGG | 0.376561 | 1.3:+46938884 | None:intergenic |
TATTCAGATTTGATAGAGAT+TGG | 0.391995 | 1.3:-46938668 | MS.gene073796:intron |
TTCTTAAAGGTTCAAAAGAA+TGG | 0.393543 | 1.3:-46938461 | MS.gene073796:CDS |
TGCACATGGCCGTTTGTATC+CGG | 0.400201 | 1.3:+46937043 | None:intergenic |
TGACATACCCTGCAGGTAGA+AGG | 0.407875 | 1.3:+46937807 | None:intergenic |
GGATGAATAGCTTTGCGCTT+AGG | 0.413895 | 1.3:+46938410 | None:intergenic |
ACTAGTGGTGGAGATGCTTC+TGG | 0.418390 | 1.3:-46938866 | MS.gene073796:CDS |
GCTGAAGTTTACGGTTTCAT+TGG | 0.426347 | 1.3:-46937079 | MS.gene073796:CDS |
GATGAACTCAACAATCTTCA+AGG | 0.432102 | 1.3:-46937746 | MS.gene073796:CDS |
TTAGCTGACATTGGATCAAA+GGG | 0.440291 | 1.3:-46937587 | MS.gene073796:intron |
TGTGCAGAAGCTGAAGGAAA+TGG | 0.443024 | 1.3:-46937026 | MS.gene073796:CDS |
TGTGTTGGTATTTGAGAAGT+AGG | 0.447932 | 1.3:+46937515 | None:intergenic |
ACACAAAATCCCGTGATTCA+TGG | 0.453178 | 1.3:-46937488 | MS.gene073796:intron |
TTTACTGATTTAGCTGACAT+TGG | 0.472761 | 1.3:-46937596 | MS.gene073796:intron |
TTTCCTTCAGCTTCTGCACA+TGG | 0.485443 | 1.3:+46937029 | None:intergenic |
AACAATCTTCAAGGAAATGA+AGG | 0.487995 | 1.3:-46937737 | MS.gene073796:intron |
TTGCGCTTAGGACGAGGAGG+AGG | 0.489119 | 1.3:+46938422 | None:intergenic |
ATCAGCAACAGCGGTCTTAG+TGG | 0.492479 | 1.3:-46937563 | MS.gene073796:CDS |
GAACTCTAATTCTAACTCAA+TGG | 0.493422 | 1.3:-46938912 | MS.gene073796:CDS |
GCAAATACCCTTCTACCTGC+AGG | 0.497509 | 1.3:-46937815 | MS.gene073796:CDS |
GAGCCAAAAGCAATGGATGC+TGG | 0.501558 | 1.3:+46937842 | None:intergenic |
CATGCTGATGAATACTTGTC+AGG | 0.511561 | 1.3:-46937768 | MS.gene073796:CDS |
GTGTTGGTATTTGAGAAGTA+GGG | 0.528190 | 1.3:+46937516 | None:intergenic |
TTTAGCTGACATTGGATCAA+AGG | 0.530841 | 1.3:-46937588 | MS.gene073796:intron |
CCGTAAACTTCAGCAAAGTC+CGG | 0.533484 | 1.3:+46937088 | None:intergenic |
AGACCAGCTTTCTCTTGACT+TGG | 0.533707 | 1.3:+46938814 | None:intergenic |
AAAGCAATGGATGCTGGTAG+TGG | 0.539195 | 1.3:+46937848 | None:intergenic |
TGGAGATGCTTCTGGTAAGA+AGG | 0.544373 | 1.3:-46938858 | MS.gene073796:CDS |
TACCTGCAGGGTATGTCACG+TGG | 0.562293 | 1.3:-46937802 | MS.gene073796:CDS |
ATAGCTTTGCGCTTAGGACG+AGG | 0.563263 | 1.3:+46938416 | None:intergenic |
GACATACCCTGCAGGTAGAA+GGG | 0.588018 | 1.3:+46937808 | None:intergenic |
TTACCAAGTCAAGAGAAAGC+TGG | 0.591540 | 1.3:-46938817 | MS.gene073796:CDS |
TGCCGAAGAGCCAAAAGCAA+TGG | 0.592704 | 1.3:+46937835 | None:intergenic |
ACAACTACAACAACTAGTGG+TGG | 0.601385 | 1.3:-46938878 | MS.gene073796:CDS |
CAAATACCCTTCTACCTGCA+GGG | 0.604923 | 1.3:-46937814 | MS.gene073796:CDS |
CGGCCATGTGCAGAAGCTGA+AGG | 0.613903 | 1.3:-46937032 | MS.gene073796:CDS |
AAATTGCTAGTGGTCAGTAG+TGG | 0.620002 | 1.3:+46931796 | None:intergenic |
TGCGCTTAGGACGAGGAGGA+GGG | 0.622142 | 1.3:+46938423 | None:intergenic |
ACCTGCAGGGTATGTCACGT+GGG | 0.625418 | 1.3:-46937801 | MS.gene073796:CDS |
CAGACGATTACCATGAATCA+CGG | 0.628602 | 1.3:+46937478 | None:intergenic |
AGACGATTACCATGAATCAC+GGG | 0.628967 | 1.3:+46937479 | None:intergenic |
TCCCACGTGACATACCCTGC+AGG | 0.633438 | 1.3:+46937800 | None:intergenic |
CTGACAAGTATTCATCAGCA+TGG | 0.637093 | 1.3:+46937769 | None:intergenic |
ACAACAACTACAACAACTAG+TGG | 0.647197 | 1.3:-46938881 | MS.gene073796:CDS |
GGCTAGACAAGTTGACAGTG+AGG | 0.653452 | 1.3:+46933771 | None:intergenic |
ACTTCTCAAATACCAACACA+AGG | 0.657953 | 1.3:-46937512 | MS.gene073796:CDS |
TCAAAGGGGATCAGCAACAG+CGG | 0.674075 | 1.3:-46937572 | MS.gene073796:CDS |
GTGTTGAAGATACTAATACA+AGG | 0.674684 | 1.3:-46937541 | MS.gene073796:CDS |
GCTTTGCGCTTAGGACGAGG+AGG | 0.703477 | 1.3:+46938419 | None:intergenic |
CTTCTCAAATACCAACACAA+GGG | 0.709558 | 1.3:-46937511 | MS.gene073796:CDS |
TAGCTGACATTGGATCAAAG+GGG | 0.749798 | 1.3:-46937586 | MS.gene073796:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 46931802 | 46938936 | 46931802 | ID=MS.gene073796 |
chr1.3 | mRNA | 46931802 | 46938936 | 46931802 | ID=MS.gene073796.t1;Parent=MS.gene073796 |
chr1.3 | exon | 46938776 | 46938936 | 46938776 | ID=MS.gene073796.t1.exon1;Parent=MS.gene073796.t1 |
chr1.3 | CDS | 46938776 | 46938936 | 46938776 | ID=cds.MS.gene073796.t1;Parent=MS.gene073796.t1 |
chr1.3 | exon | 46938626 | 46938683 | 46938626 | ID=MS.gene073796.t1.exon2;Parent=MS.gene073796.t1 |
chr1.3 | CDS | 46938626 | 46938683 | 46938626 | ID=cds.MS.gene073796.t1;Parent=MS.gene073796.t1 |
chr1.3 | exon | 46938384 | 46938507 | 46938384 | ID=MS.gene073796.t1.exon3;Parent=MS.gene073796.t1 |
chr1.3 | CDS | 46938384 | 46938507 | 46938384 | ID=cds.MS.gene073796.t1;Parent=MS.gene073796.t1 |
chr1.3 | exon | 46937738 | 46937878 | 46937738 | ID=MS.gene073796.t1.exon4;Parent=MS.gene073796.t1 |
chr1.3 | CDS | 46937738 | 46937878 | 46937738 | ID=cds.MS.gene073796.t1;Parent=MS.gene073796.t1 |
chr1.3 | exon | 46937489 | 46937605 | 46937489 | ID=MS.gene073796.t1.exon5;Parent=MS.gene073796.t1 |
chr1.3 | CDS | 46937489 | 46937605 | 46937489 | ID=cds.MS.gene073796.t1;Parent=MS.gene073796.t1 |
chr1.3 | exon | 46937006 | 46937115 | 46937006 | ID=MS.gene073796.t1.exon6;Parent=MS.gene073796.t1 |
chr1.3 | CDS | 46937006 | 46937115 | 46937006 | ID=cds.MS.gene073796.t1;Parent=MS.gene073796.t1 |
chr1.3 | exon | 46933754 | 46933813 | 46933754 | ID=MS.gene073796.t1.exon7;Parent=MS.gene073796.t1 |
chr1.3 | CDS | 46933754 | 46933813 | 46933754 | ID=cds.MS.gene073796.t1;Parent=MS.gene073796.t1 |
chr1.3 | exon | 46931802 | 46931906 | 46931802 | ID=MS.gene073796.t1.exon8;Parent=MS.gene073796.t1 |
chr1.3 | CDS | 46931802 | 46931906 | 46931802 | ID=cds.MS.gene073796.t1;Parent=MS.gene073796.t1 |
Gene Sequence |
Protein sequence |