AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07412

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07412.t1 MTR_1g076430 100.000 347 0 0 1 347 170 516 0.0 726
MS.gene07412.t1 MTR_1g041085 91.329 346 29 1 1 345 176 521 0.0 675
MS.gene07412.t1 MTR_2g054940 84.548 343 53 0 1 343 169 511 0.0 624
MS.gene07412.t1 MTR_4g113280 80.466 343 56 1 1 343 158 489 0.0 582
MS.gene07412.t1 MTR_7g081695 82.335 334 47 1 1 334 169 490 0.0 580
MS.gene07412.t1 MTR_7g118170 76.246 341 78 2 1 338 189 529 0.0 560
MS.gene07412.t1 MTR_4g070270 73.294 337 89 1 1 337 167 502 0.0 529
MS.gene07412.t1 MTR_1g110930 68.513 343 107 1 1 343 155 496 0.0 512
MS.gene07412.t1 MTR_5g056510 67.638 343 110 1 1 343 155 496 4.59e-178 503
MS.gene07412.t1 MTR_6g074880 70.326 337 99 1 4 339 134 470 8.85e-178 501
MS.gene07412.t1 MTR_4g054630 69.822 338 101 1 1 337 129 466 1.76e-177 500
MS.gene07412.t1 MTR_4g054415 69.822 338 101 1 1 337 88 425 2.73e-177 498
MS.gene07412.t1 MTR_6g032965 67.751 338 109 0 1 338 48 385 1.50e-176 495
MS.gene07412.t1 MTR_3g105550 65.598 343 109 1 1 334 191 533 8.31e-174 494
MS.gene07412.t1 MTR_7g118160 64.724 326 102 3 19 336 98 418 2.99e-158 450
MS.gene07412.t1 MTR_2g013740 59.271 329 130 2 1 329 179 503 7.16e-139 404
MS.gene07412.t1 MTR_2g007020 56.047 339 147 2 1 338 115 452 5.28e-138 400
MS.gene07412.t1 MTR_2g436480 55.060 336 148 2 4 337 117 451 1.92e-136 396
MS.gene07412.t1 MTR_1g102290 46.567 335 178 1 2 335 150 484 1.02e-110 331
MS.gene07412.t1 MTR_4g054260 60.938 256 82 2 83 337 87 325 1.04e-108 320
MS.gene07412.t1 MTR_3g072940 46.547 333 177 1 3 335 152 483 6.45e-105 317
MS.gene07412.t1 MTR_3g072980 46.547 333 177 1 3 335 152 483 6.52e-105 317
MS.gene07412.t1 MTR_4g062190 45.058 344 167 3 7 334 105 442 3.78e-102 309
MS.gene07412.t1 MTR_4g062270 44.970 338 179 2 1 334 99 433 6.20e-101 305
MS.gene07412.t1 MTR_2g096210 43.466 352 179 3 1 336 99 446 8.15e-101 306
MS.gene07412.t1 MTR_6g051440 46.246 333 178 1 3 335 151 482 8.71e-100 303
MS.gene07412.t1 MTR_1g115560 41.972 355 182 3 1 334 100 451 8.96e-100 303
MS.gene07412.t1 MTR_4g062170 45.322 342 168 4 7 334 105 441 2.12e-97 296
MS.gene07412.t1 MTR_4g053905 68.553 159 50 0 179 337 1 159 3.78e-78 236
MS.gene07412.t1 MTR_7g086260 56.364 55 24 0 174 228 22 76 7.66e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07412.t1 AT1G04220 83.898 354 50 3 1 347 172 525 0.0 627
MS.gene07412.t1 AT2G26640 83.673 343 56 0 1 343 167 509 0.0 616
MS.gene07412.t1 AT5G43760 83.807 352 51 3 1 346 178 529 0.0 608
MS.gene07412.t1 AT1G01120 73.964 338 87 1 1 337 189 526 0.0 556
MS.gene07412.t1 AT1G19440 73.731 335 87 1 1 335 179 512 0.0 536
MS.gene07412.t1 AT2G16280 72.537 335 91 1 1 335 175 508 0.0 526
MS.gene07412.t1 AT4G34510 71.598 338 94 2 1 337 149 485 0.0 525
MS.gene07412.t1 AT1G68530 67.055 343 112 1 1 343 156 497 1.32e-176 499
MS.gene07412.t1 AT1G25450 65.889 343 116 1 1 343 151 492 2.08e-173 491
MS.gene07412.t1 AT2G46720 64.118 340 118 2 1 337 127 465 1.55e-170 483
MS.gene07412.t1 AT2G15090 66.469 337 112 1 1 337 144 479 5.64e-169 479
MS.gene07412.t1 AT4G34250 66.766 337 111 1 1 337 152 487 1.02e-167 477
MS.gene07412.t1 AT2G26250 62.050 361 111 2 1 335 188 548 1.09e-165 474
MS.gene07412.t1 AT4G34520 65.976 338 113 2 1 337 154 490 2.12e-163 466
MS.gene07412.t1 AT3G10280 62.353 340 117 3 1 337 127 458 9.05e-163 463
MS.gene07412.t1 AT1G71160 52.239 335 158 2 1 335 114 446 2.84e-129 378
MS.gene07412.t1 AT5G49070 51.594 345 164 2 1 343 118 461 6.09e-128 374
MS.gene07412.t1 AT3G52160 51.840 326 126 2 1 326 42 336 6.04e-120 350
MS.gene07412.t1 AT3G52160 51.840 326 126 2 1 326 155 449 1.14e-118 350
MS.gene07412.t1 AT2G28630 45.690 348 175 3 1 334 99 446 4.13e-106 319
MS.gene07412.t1 AT2G28630 45.690 348 175 3 1 334 99 446 4.13e-106 319
MS.gene07412.t1 AT1G07720 45.143 350 175 3 1 334 99 447 4.02e-103 311
MS.gene07412.t1 AT1G07720 45.143 350 175 3 1 334 142 490 8.29e-103 312
MS.gene07412.t1 AT5G04530 42.647 340 186 3 1 334 101 437 1.80e-99 302
MS.gene07412.t1 AT1G68530 64.948 194 68 0 1 194 156 349 2.53e-91 278
MS.gene07412.t1 AT5G49070 47.959 196 102 0 1 196 118 313 5.99e-63 203

Find 77 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACACTCAACTGGTATTT+TGG 0.148092 1.2:-64063460 MS.gene07412:CDS
GGCTAAGGATATTGGGATTT+TGG 0.160476 1.2:-64064287 MS.gene07412:CDS
ATTTCTTCTCATCTTCTTCT+TGG 0.218715 1.2:+64063275 None:intergenic
TGCTGGTGGAAGAGCTGTTT+TGG 0.263824 1.2:-64063047 MS.gene07412:CDS
CTATTCAGTGTCATTCTTGA+TGG 0.275990 1.2:+64062980 None:intergenic
TTTGCTGTCAGAAGCTTTGT+TGG 0.296454 1.2:+64063372 None:intergenic
GTGAATCATTATAAGTTAAG+AGG 0.297927 1.2:-64064214 MS.gene07412:CDS
TGGCAAATTGCATTTGGTTC+TGG 0.298723 1.2:-64062872 MS.gene07412:CDS
ATCAAATTGTTTGTTTAGAA+TGG 0.305639 1.2:-64063416 MS.gene07412:CDS
ATCACTCTCAAAAGATTTAA+TGG 0.313780 1.2:-64063242 MS.gene07412:CDS
TGGTGCTATTGATGAGCTTT+TGG 0.331199 1.2:-64064326 MS.gene07412:CDS
ACACTTCTAGTAGTTCATTA+TGG 0.333772 1.2:-64062949 MS.gene07412:CDS
TCCAAACTCTTATGCCTTAG+TGG 0.348892 1.2:-64063497 MS.gene07412:CDS
GAACCAATGGTTGCCACTTT+AGG 0.351358 1.2:+64062746 None:intergenic
GTGTTAAGGCTAAGGATATT+GGG 0.356405 1.2:-64064294 MS.gene07412:CDS
GGTGTTAAGGCTAAGGATAT+TGG 0.367782 1.2:-64064295 MS.gene07412:CDS
AAGTTATAATCTTGGTGGTA+TGG 0.383403 1.2:-64064182 MS.gene07412:CDS
ACCACTAAGGCATAAGAGTT+TGG 0.387819 1.2:+64063496 None:intergenic
AGGACTTGGCAAATTGCATT+TGG 0.392984 1.2:-64062878 MS.gene07412:CDS
AGAATGACACTGAATAGATT+TGG 0.394432 1.2:-64062974 MS.gene07412:CDS
GAAGATGAGAAGAAATCAAT+TGG 0.399460 1.2:-64063268 MS.gene07412:CDS
AATGTTCAAAGTTATAATCT+TGG 0.402519 1.2:-64064190 MS.gene07412:CDS
TAGTTCATTATGGTATGAAT+TGG 0.409549 1.2:-64062939 MS.gene07412:CDS
TCAAATTGTTTGTTTAGAAT+GGG 0.411142 1.2:-64063415 MS.gene07412:CDS
GCCACTTTAGGCACATGAAC+AGG 0.414943 1.2:+64062758 None:intergenic
CACACCGTCCGAACACATAA+AGG 0.416666 1.2:-64063328 MS.gene07412:CDS
TGATCTTAGTGATTGGCATA+TGG 0.423434 1.2:-64063005 MS.gene07412:CDS
GGTGGTATGGGTTGTAGTGC+TGG 0.424592 1.2:-64064169 MS.gene07412:CDS
TCAAAAGCTAATTTAAAATC+AGG 0.424969 1.2:+64063085 None:intergenic
TAATTTAAAATCAGGAATGT+AGG 0.428965 1.2:+64063093 None:intergenic
AAAATCTTGATCTTAGTGAT+TGG 0.430588 1.2:-64063012 MS.gene07412:CDS
AACCATTGGTTCATCAAGTT+AGG 0.443186 1.2:-64062735 None:intergenic
TTTGGAGAAAACTGGTGTTA+AGG 0.445941 1.2:-64064308 MS.gene07412:CDS
GAAGCTGAGGAAGTTATGTT+TGG 0.456300 1.2:-64064346 MS.gene07412:CDS
CCTTGCTAAGCAGCTCCTAC+AGG 0.458272 1.2:-64064131 MS.gene07412:intron
GGAGGATTAGAAAAGGTGAT+AGG 0.461538 1.2:-64062898 MS.gene07412:CDS
AGTTATAATCTTGGTGGTAT+GGG 0.463605 1.2:-64064181 MS.gene07412:CDS
CGTCCGCGCCTTTATGTGTT+CGG 0.465432 1.2:+64063320 None:intergenic
TCCTGTTCATGTGCCTAAAG+TGG 0.481276 1.2:-64062759 MS.gene07412:CDS
TGGAGAACATCACACTCAAC+TGG 0.498098 1.2:-64063468 MS.gene07412:CDS
AATTTAAAATCAGGAATGTA+GGG 0.500091 1.2:+64063094 None:intergenic
TCTGACATAGGTAGGACTAA+TGG 0.501024 1.2:+64063175 None:intergenic
TTCCTAACTTGATGAACCAA+TGG 0.503576 1.2:+64062733 None:intergenic
TGAATCATTATAAGTTAAGA+GGG 0.506304 1.2:-64064213 MS.gene07412:CDS
GTTCAAAGTTATAATCTTGG+TGG 0.515718 1.2:-64064187 MS.gene07412:CDS
TGGCTTATACTGAAGCTAAA+GGG 0.515795 1.2:-64062919 MS.gene07412:CDS
TTAGAAAAGGTGATAGGACT+TGG 0.517295 1.2:-64062892 MS.gene07412:CDS
CGCGCCTTTATGTGTTCGGA+CGG 0.519941 1.2:+64063324 None:intergenic
AAAGATTTAATGGCGGTCGC+CGG 0.521478 1.2:-64063232 MS.gene07412:CDS
GAAAACTGGTGTTAAGGCTA+AGG 0.522687 1.2:-64064302 MS.gene07412:CDS
TTGGCTTATACTGAAGCTAA+AGG 0.523513 1.2:-64062920 MS.gene07412:CDS
GTTCTCCATGCTCACCACTA+AGG 0.531929 1.2:+64063483 None:intergenic
TGGACCAAGTGTTGTGATGT+TGG 0.537554 1.2:+64063195 None:intergenic
TGTCAGAAGCTTTGTTGGAG+AGG 0.549538 1.2:+64063377 None:intergenic
TTTCTCCTTAGCTGGATCAA+CGG 0.549864 1.2:+64062811 None:intergenic
GTGCCTAAAGTGGCAACCAT+TGG 0.552723 1.2:-64062749 MS.gene07412:CDS
GCTAAAGGGAGGATTAGAAA+AGG 0.553131 1.2:-64062905 MS.gene07412:CDS
AATTGTTTGTTTAGAATGGG+AGG 0.568502 1.2:-64063412 MS.gene07412:CDS
TCATGAATCTCATCCATCCA+TGG 0.570459 1.2:+64062785 None:intergenic
AAAACCAACATCACAACACT+TGG 0.570838 1.2:-64063199 MS.gene07412:CDS
AACAGAAGCTGTTCTGACAT+AGG 0.577420 1.2:+64063163 None:intergenic
TTCGGACGGTGTGGATCAGT+TGG 0.577447 1.2:+64063338 None:intergenic
GGCGCGGACGACAGATCATA+CGG 0.585092 1.2:-64063307 MS.gene07412:CDS
GAAGCTGTTCTGACATAGGT+AGG 0.592086 1.2:+64063167 None:intergenic
ATCCTTGTATGGCTGAAGCA+AGG 0.595750 1.2:-64064372 None:intergenic
GTGCTGTGTGGCGTGCATTG+AGG 0.599018 1.2:-64062835 MS.gene07412:CDS
GAGGACCGTTGATCCAGCTA+AGG 0.607671 1.2:-64062816 MS.gene07412:CDS
TTATGCCTTAGTGGTGAGCA+TGG 0.609284 1.2:-64063488 MS.gene07412:CDS
ATAGCAGAAAGAGAAGGTGT+AGG 0.612815 1.2:+64064241 None:intergenic
CCTGTAGGAGCTGCTTAGCA+AGG 0.618822 1.2:+64064131 None:intergenic
TGAAGCAAGGAAAGAAGCTG+AGG 0.624018 1.2:-64064359 MS.gene07412:CDS
CTTTATGTGTTCGGACGGTG+TGG 0.639949 1.2:+64063329 None:intergenic
ACAATCATAGCAGAAAGAGA+AGG 0.652463 1.2:+64064235 None:intergenic
CTTATACTGAAGCTAAAGGG+AGG 0.665669 1.2:-64062916 MS.gene07412:CDS
CGTCCGAACACATAAAGGCG+CGG 0.707110 1.2:-64063323 MS.gene07412:CDS
ACTCTCAAAAGATTTAATGG+CGG 0.725346 1.2:-64063239 MS.gene07412:CDS
TTAAATGTAATAGTGCTGTG+TGG 0.774068 1.2:-64062847 MS.gene07412:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTATTATGAATAAAGAA+TGG + chr1.2:64063036-64063055 None:intergenic 15.0%
!! TAATTTCAATGATTTATTCA+TGG + chr1.2:64063475-64063494 None:intergenic 15.0%
!!! AACATTTTTGTTATATGTAT+AGG - chr1.2:64063576-64063595 MS.gene07412:intron 15.0%
!! AATCTTTACAATTACAACTA+AGG - chr1.2:64063447-64063466 MS.gene07412:CDS 20.0%
!! AATGTTCAAAGTTATAATCT+TGG - chr1.2:64062910-64062929 MS.gene07412:CDS 20.0%
!! ATCAAATTGTTTGTTTAGAA+TGG - chr1.2:64063684-64063703 MS.gene07412:intron 20.0%
!! ATCTTTACAATTACAACTAA+GGG - chr1.2:64063448-64063467 MS.gene07412:CDS 20.0%
!! TAGTTGTAATTGTAAAGATT+TGG + chr1.2:64063447-64063466 None:intergenic 20.0%
!! TGAATCATTATAAGTTAAGA+GGG - chr1.2:64062887-64062906 MS.gene07412:CDS 20.0%
!!! AATACTATTGTTTAACTTCA+TGG - chr1.2:64063048-64063067 MS.gene07412:CDS 20.0%
!!! AATTTAAAATCAGGAATGTA+GGG + chr1.2:64064009-64064028 None:intergenic 20.0%
!!! ATTGTTTTGCTATAATAACA+TGG + chr1.2:64063550-64063569 None:intergenic 20.0%
!!! CTATAATAACATGGTATTTT+TGG + chr1.2:64063541-64063560 None:intergenic 20.0%
!!! TAATTTAAAATCAGGAATGT+AGG + chr1.2:64064010-64064029 None:intergenic 20.0%
!!! TCAAAAGCTAATTTAAAATC+AGG + chr1.2:64064018-64064037 None:intergenic 20.0%
!!! TCAAATTGTTTGTTTAGAAT+GGG - chr1.2:64063685-64063704 MS.gene07412:intron 20.0%
!!! TTCAAATTATAGCTTTAAGT+TGG - chr1.2:64063152-64063171 MS.gene07412:CDS 20.0%
!!! TTCAAGTTAGAACAAAATTA+GGG - chr1.2:64063123-64063142 MS.gene07412:CDS 20.0%
! AAAATCTTGATCTTAGTGAT+TGG - chr1.2:64064088-64064107 MS.gene07412:intron 25.0%
! ACCAAAAGTAAATTAAGTAC+TGG - chr1.2:64063263-64063282 MS.gene07412:CDS 25.0%
! ATCACTCTCAAAAGATTTAA+TGG - chr1.2:64063858-64063877 MS.gene07412:intron 25.0%
! GTGAATCATTATAAGTTAAG+AGG - chr1.2:64062886-64062905 MS.gene07412:CDS 25.0%
! TAGTTCATTATGGTATGAAT+TGG - chr1.2:64064161-64064180 MS.gene07412:CDS 25.0%
! TCAAGTTAGAACAAAATTAG+GGG - chr1.2:64063124-64063143 MS.gene07412:CDS 25.0%
! TTGTAAAGATTTGGACAATT+TGG + chr1.2:64063438-64063457 None:intergenic 25.0%
!! ACCAGTACTTAATTTACTTT+TGG + chr1.2:64063267-64063286 None:intergenic 25.0%
!! ATTATTGACTATAGTTTGGT+TGG + chr1.2:64063414-64063433 None:intergenic 25.0%
!! CTTCAAGTTAGAACAAAATT+AGG - chr1.2:64063122-64063141 MS.gene07412:CDS 25.0%
!! TGGTATTATTGACTATAGTT+TGG + chr1.2:64063418-64063437 None:intergenic 25.0%
!! TTATTGACTATAGTTTGGTT+GGG + chr1.2:64063413-64063432 None:intergenic 25.0%
ACACTTCTAGTAGTTCATTA+TGG - chr1.2:64064151-64064170 MS.gene07412:CDS 30.0%
ACTCTCAAAAGATTTAATGG+CGG - chr1.2:64063861-64063880 MS.gene07412:intron 30.0%
AGAATGACACTGAATAGATT+TGG - chr1.2:64064126-64064145 MS.gene07412:intron 30.0%
ATTTCTTCTCATCTTCTTCT+TGG + chr1.2:64063828-64063847 None:intergenic 30.0%
GAAGATGAGAAGAAATCAAT+TGG - chr1.2:64063832-64063851 MS.gene07412:intron 30.0%
GTTCAAAGTTATAATCTTGG+TGG - chr1.2:64062913-64062932 MS.gene07412:CDS 30.0%
TGTTATAACTGCAAGTAACA+TGG + chr1.2:64063358-64063377 None:intergenic 30.0%
TTAAATGTAATAGTGCTGTG+TGG - chr1.2:64064253-64064272 MS.gene07412:CDS 30.0%
! AAGTTATAATCTTGGTGGTA+TGG - chr1.2:64062918-64062937 MS.gene07412:CDS 30.0%
! AATTGTTTGTTTAGAATGGG+AGG - chr1.2:64063688-64063707 MS.gene07412:intron 30.0%
! AGTTATAATCTTGGTGGTAT+GGG - chr1.2:64062919-64062938 MS.gene07412:CDS 30.0%
! TATTGACTATAGTTTGGTTG+GGG + chr1.2:64063412-64063431 None:intergenic 30.0%
!! GTTTAACTTCATGGTCATTT+TGG - chr1.2:64063057-64063076 MS.gene07412:CDS 30.0%
AAAACCAACATCACAACACT+TGG - chr1.2:64063901-64063920 MS.gene07412:intron 35.0%
ACAATCATAGCAGAAAGAGA+AGG + chr1.2:64062868-64062887 None:intergenic 35.0%
GTGTTAAGGCTAAGGATATT+GGG - chr1.2:64062806-64062825 MS.gene07412:CDS 35.0%
TAAGGAGAAAAATCCATGGA+TGG - chr1.2:64064302-64064321 MS.gene07412:CDS 35.0%
TGATCTTAGTGATTGGCATA+TGG - chr1.2:64064095-64064114 MS.gene07412:intron 35.0%
TGGCTTATACTGAAGCTAAA+GGG - chr1.2:64064181-64064200 MS.gene07412:CDS 35.0%
TTAGAAAAGGTGATAGGACT+TGG - chr1.2:64064208-64064227 MS.gene07412:CDS 35.0%
TTGGCTTATACTGAAGCTAA+AGG - chr1.2:64064180-64064199 MS.gene07412:CDS 35.0%
TTGGGGCAGTGTATTAAATA+GGG + chr1.2:64063395-64063414 None:intergenic 35.0%
! ATCACACTCAACTGGTATTT+TGG - chr1.2:64063640-64063659 MS.gene07412:intron 35.0%
! CATTTTTGTATTCATGCTGG+TGG - chr1.2:64064039-64064058 MS.gene07412:intron 35.0%
! CTATTCAGTGTCATTCTTGA+TGG + chr1.2:64064123-64064142 None:intergenic 35.0%
! GAGCATTTTTGTATTCATGC+TGG - chr1.2:64064036-64064055 MS.gene07412:intron 35.0%
! TTTGGAGAAAACTGGTGTTA+AGG - chr1.2:64062792-64062811 MS.gene07412:CDS 35.0%
!! AAGAGCTGTTTTGGATGAAT+TGG - chr1.2:64064062-64064081 MS.gene07412:intron 35.0%
AACAGAAGCTGTTCTGACAT+AGG + chr1.2:64063940-64063959 None:intergenic 40.0%
AATCTGTACATGTGTGTGTG+TGG + chr1.2:64063333-64063352 None:intergenic 40.0%
ACCACTAAGGCATAAGAGTT+TGG + chr1.2:64063607-64063626 None:intergenic 40.0%
AGGACTTGGCAAATTGCATT+TGG - chr1.2:64064222-64064241 MS.gene07412:CDS 40.0%
CAGCTAAGGAGAAAAATCCA+TGG - chr1.2:64064298-64064317 MS.gene07412:CDS 40.0%
CTTATACTGAAGCTAAAGGG+AGG - chr1.2:64064184-64064203 MS.gene07412:CDS 40.0%
GAAGCTGAGGAAGTTATGTT+TGG - chr1.2:64062754-64062773 MS.gene07412:CDS 40.0%
GCTAAAGGGAGGATTAGAAA+AGG - chr1.2:64064195-64064214 MS.gene07412:CDS 40.0%
GCTTCAAGAAACTTCTCTCA+TGG + chr1.2:64063290-64063309 None:intergenic 40.0%
GGAGGATTAGAAAAGGTGAT+AGG - chr1.2:64064202-64064221 MS.gene07412:CDS 40.0%
GGTGTTAAGGCTAAGGATAT+TGG - chr1.2:64062805-64062824 MS.gene07412:CDS 40.0%
GTTGGGGCAGTGTATTAAAT+AGG + chr1.2:64063396-64063415 None:intergenic 40.0%
TCATGAATCTCATCCATCCA+TGG + chr1.2:64064318-64064337 None:intergenic 40.0%
TCCAAACTCTTATGCCTTAG+TGG - chr1.2:64063603-64063622 MS.gene07412:intron 40.0%
TCTGACATAGGTAGGACTAA+TGG + chr1.2:64063928-64063947 None:intergenic 40.0%
TTTCTCCTTAGCTGGATCAA+CGG + chr1.2:64064292-64064311 None:intergenic 40.0%
! ATAGCAGAAAGAGAAGGTGT+AGG + chr1.2:64062862-64062881 None:intergenic 40.0%
! CATGGATTTTTCTCCTTAGC+TGG + chr1.2:64064300-64064319 None:intergenic 40.0%
! GAAAACTGGTGTTAAGGCTA+AGG - chr1.2:64062798-64062817 MS.gene07412:CDS 40.0%
! GGCTAAGGATATTGGGATTT+TGG - chr1.2:64062813-64062832 MS.gene07412:CDS 40.0%
! TGGCAAATTGCATTTGGTTC+TGG - chr1.2:64064228-64064247 MS.gene07412:CDS 40.0%
! TTTGCTGTCAGAAGCTTTGT+TGG + chr1.2:64063731-64063750 None:intergenic 40.0%
!! GATGAGCTTTTGGAGAAAAC+TGG - chr1.2:64062784-64062803 MS.gene07412:CDS 40.0%
!! GCTTCTGTTTTTCGCAACTT+TGG - chr1.2:64063951-64063970 MS.gene07412:intron 40.0%
!!! TGGTGCTATTGATGAGCTTT+TGG - chr1.2:64062774-64062793 MS.gene07412:CDS 40.0%
AAAGATTTAATGGCGGTCGC+CGG - chr1.2:64063868-64063887 MS.gene07412:intron 45.0%
ATGCATGCAAACCAACCTGT+AGG + chr1.2:64062987-64063006 None:intergenic 45.0%
ATGTGTGTGTGTGGACAACT+GGG + chr1.2:64063324-64063343 None:intergenic 45.0%
GAAGCTGTTCTGACATAGGT+AGG + chr1.2:64063936-64063955 None:intergenic 45.0%
GGGCAGTGTATTAAATAGGG+TGG + chr1.2:64063392-64063411 None:intergenic 45.0%
TCCTGTTCATGTGCCTAAAG+TGG - chr1.2:64064341-64064360 MS.gene07412:CDS 45.0%
TGAAGCAAGGAAAGAAGCTG+AGG - chr1.2:64062741-64062760 MS.gene07412:CDS 45.0%
TGGAGAACATCACACTCAAC+TGG - chr1.2:64063632-64063651 MS.gene07412:intron 45.0%
TTATGCCTTAGTGGTGAGCA+TGG - chr1.2:64063612-64063631 MS.gene07412:intron 45.0%
! TGGACCAAGTGTTGTGATGT+TGG + chr1.2:64063908-64063927 None:intergenic 45.0%
!! GAACCAATGGTTGCCACTTT+AGG + chr1.2:64064357-64064376 None:intergenic 45.0%
!! TGTCAGAAGCTTTGTTGGAG+AGG + chr1.2:64063726-64063745 None:intergenic 45.0%
!!! GTTGGTTTTGAGTGCTTCTC+CGG + chr1.2:64063890-64063909 None:intergenic 45.0%
CACACCGTCCGAACACATAA+AGG - chr1.2:64063772-64063791 MS.gene07412:intron 50.0%
CATGTGTGTGTGTGGACAAC+TGG + chr1.2:64063325-64063344 None:intergenic 50.0%
CTTTATGTGTTCGGACGGTG+TGG + chr1.2:64063774-64063793 None:intergenic 50.0%
GTGCCTAAAGTGGCAACCAT+TGG - chr1.2:64064351-64064370 MS.gene07412:CDS 50.0%
GTTCTCCATGCTCACCACTA+AGG + chr1.2:64063620-64063639 None:intergenic 50.0%
TGTGTGTGTGTGGACAACTG+GGG + chr1.2:64063323-64063342 None:intergenic 50.0%
! GCCACTTTAGGCACATGAAC+AGG + chr1.2:64064345-64064364 None:intergenic 50.0%
! TGCTGGTGGAAGAGCTGTTT+TGG - chr1.2:64064053-64064072 MS.gene07412:intron 50.0%
CCTGTAGGAGCTGCTTAGCA+AGG + chr1.2:64062972-64062991 None:intergenic 55.0%
CCTTGCTAAGCAGCTCCTAC+AGG - chr1.2:64062969-64062988 MS.gene07412:CDS 55.0%
CGCGCCTTTATGTGTTCGGA+CGG + chr1.2:64063779-64063798 None:intergenic 55.0%
CGTCCGAACACATAAAGGCG+CGG - chr1.2:64063777-64063796 MS.gene07412:intron 55.0%
CGTCCGCGCCTTTATGTGTT+CGG + chr1.2:64063783-64063802 None:intergenic 55.0%
GAGGACCGTTGATCCAGCTA+AGG - chr1.2:64064284-64064303 MS.gene07412:CDS 55.0%
GCTAAGCAGCTCCTACAGGT+TGG - chr1.2:64062973-64062992 MS.gene07412:CDS 55.0%
TTCGGACGGTGTGGATCAGT+TGG + chr1.2:64063765-64063784 None:intergenic 55.0%
! GGTGGTATGGGTTGTAGTGC+TGG - chr1.2:64062931-64062950 MS.gene07412:CDS 55.0%
GGCGCGGACGACAGATCATA+CGG - chr1.2:64063793-64063812 MS.gene07412:intron 60.0%
GTGCTGTGTGGCGTGCATTG+AGG - chr1.2:64064265-64064284 MS.gene07412:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 64062736 64064386 64062736 ID=MS.gene07412
chr1.2 mRNA 64062736 64064386 64062736 ID=MS.gene07412.t1;Parent=MS.gene07412
chr1.2 exon 64064132 64064386 64064132 ID=MS.gene07412.t1.exon1;Parent=MS.gene07412.t1
chr1.2 CDS 64064132 64064386 64064132 ID=cds.MS.gene07412.t1;Parent=MS.gene07412.t1
chr1.2 exon 64062736 64063524 64062736 ID=MS.gene07412.t1.exon2;Parent=MS.gene07412.t1
chr1.2 CDS 64062736 64063524 64062736 ID=cds.MS.gene07412.t1;Parent=MS.gene07412.t1
Gene Sequence

>MS.gene07412

ATGGCTGAAGCAAGGAAAGAAGCTGAGGAAGTTATGTTTGGTGCTATTGATGAGCTTTTGGAGAAAACTGGTGTTAAGGCTAAGGATATTGGGATTTTGGTTGTGAATTGTAGTTTGTTTAATCCTACACCTTCTCTTTCTGCTATGATTGTGAATCATTATAAGTTAAGAGGGAATGTTCAAAGTTATAATCTTGGTGGTATGGGTTGTAGTGCTGGACTTATCTCGATTGACCTTGCTAAGCAGCTCCTACAGGTTGGTTTGCATGCATTTATATTCTTTCAAAATTTTAATTTTCCATTCTTTATTCATAATACTATTGTTTAACTTCATGGTCATTTTGGTAATTATAACTTAATCGTAGAGACAAAAGCTCAAAATTGTAGCTTCAAGTTAGAACAAAATTAGGGGCAAACTTCAAATTATAGCTTTAAGTTGGAATAAATTTTTAGCGAACATCTAAACTTGTGAATATCAATTATACACGTCTCAATTTAATTTTGACTCATTCAAAAAGTAAAAGTGTAACCAAAAGTAAATTAAGTACTGGTCCATGAGAGAAGTTTCTTGAAGCAATTATATCACCCCAGTTGTCCACACACACACATGTACAGATTGTCCATGTTACTTGCAGTTATAACATTAAAAGTTTGCCACCCTATTTAATACACTGCCCCAACCAAACTATAGTCAATAATACCAAATTGTCCAAATCTTTACAATTACAACTAAGGGACCATGAATAAATCATTGAAATTAACATTCACTTTATACATTCATTCAAACTTATGATCTTAATATACCAAAAATACCATGTTATTATAGCAAAACAATTTGATTAACATTTTTGTTATATGTATAGGTTCATCCAAACTCTTATGCCTTAGTGGTGAGCATGGAGAACATCACACTCAACTGGTATTTTGGCAATGACAGATCAATGTTAGTATCAAATTGTTTGTTTAGAATGGGAGGATCAGCAATTCTCCTCTCCAACAAAGCTTCTGACAGCAAAAGAGCTAAATACCAACTGATCCACACCGTCCGAACACATAAAGGCGCGGACGACAGATCATACGGTTGCGTCTTCCAAGAAGAAGATGAGAAGAAATCAATTGGTGTATCACTCTCAAAAGATTTAATGGCGGTCGCCGGAGAAGCACTCAAAACCAACATCACAACACTTGGTCCATTAGTCCTACCTATGTCAGAACAGCTTCTGTTTTTCGCAACTTTGGTTGCAAGAAAAGCTTTCAAGATGAAGATAAAACCCTACATTCCTGATTTTAAATTAGCTTTTGAGCATTTTTGTATTCATGCTGGTGGAAGAGCTGTTTTGGATGAATTGGAGAAAAATCTTGATCTTAGTGATTGGCATATGGAACCATCAAGAATGACACTGAATAGATTTGGTAACACTTCTAGTAGTTCATTATGGTATGAATTGGCTTATACTGAAGCTAAAGGGAGGATTAGAAAAGGTGATAGGACTTGGCAAATTGCATTTGGTTCTGGATTTAAATGTAATAGTGCTGTGTGGCGTGCATTGAGGACCGTTGATCCAGCTAAGGAGAAAAATCCATGGATGGATGAGATTCATGAGTTTCCTGTTCATGTGCCTAAAGTGGCAACCATTGGTTCATCAAGTTAG
Protein sequence

>MS.gene07412.t1

MAEARKEAEEVMFGAIDELLEKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNVQSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFRMGGSAILLSNKASDSKRAKYQLIHTVRTHKGADDRSYGCVFQEEDEKKSIGVSLSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKAFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLDLSDWHMEPSRMTLNRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTVDPAKEKNPWMDEIHEFPVHVPKVATIGSSS