Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074464.t1 | XP_003627374.1 | 97.3 | 188 | 5 | 0 | 1 | 188 | 1 | 188 | 3.20E-96 | 361.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074464.t1 | A9BNG6 | 47.0 | 83 | 40 | 1 | 10 | 92 | 5 | 83 | 6.4e-13 | 75.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074464.t1 | G7L8C9 | 97.3 | 188 | 5 | 0 | 1 | 188 | 1 | 188 | 2.3e-96 | 361.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051064 | MS.gene074464 | 0.966221 | 1.24E-125 | -1.69E-46 |
| MS.gene058498 | MS.gene074464 | 0.839559 | 1.47E-57 | -1.69E-46 |
| MS.gene058500 | MS.gene074464 | 0.835126 | 2.01E-56 | -1.69E-46 |
| MS.gene060879 | MS.gene074464 | 0.801676 | 8.05E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074464.t1 | MTR_8g022310 | 96.373 | 193 | 7 | 0 | 1 | 193 | 1 | 193 | 1.78e-136 | 380 |
| MS.gene074464.t1 | MTR_8g022310 | 97.872 | 188 | 4 | 0 | 1 | 188 | 1 | 188 | 1.27e-134 | 377 |
| MS.gene074464.t1 | MTR_8g022310 | 90.385 | 208 | 15 | 1 | 1 | 203 | 1 | 208 | 1.31e-134 | 376 |
| MS.gene074464.t1 | MTR_8g022310 | 97.872 | 188 | 4 | 0 | 1 | 188 | 1 | 188 | 1.53e-134 | 376 |
| MS.gene074464.t1 | MTR_8g022310 | 96.460 | 113 | 4 | 0 | 76 | 188 | 1 | 113 | 2.40e-74 | 221 |
| MS.gene074464.t1 | MTR_8g022310 | 95.960 | 99 | 4 | 0 | 90 | 188 | 7 | 105 | 1.04e-62 | 192 |
| MS.gene074464.t1 | MTR_7g112360 | 41.176 | 153 | 80 | 5 | 11 | 162 | 17 | 160 | 4.82e-31 | 112 |
| MS.gene074464.t1 | MTR_4g085070 | 43.571 | 140 | 72 | 4 | 3 | 138 | 5 | 141 | 1.54e-27 | 102 |
| MS.gene074464.t1 | MTR_7g112360 | 51.899 | 79 | 36 | 1 | 11 | 89 | 17 | 93 | 1.23e-23 | 91.7 |
| MS.gene074464.t1 | MTR_2g014480 | 45.122 | 82 | 38 | 2 | 10 | 91 | 4 | 78 | 9.78e-16 | 75.1 |
| MS.gene074464.t1 | MTR_7g101070 | 49.333 | 75 | 33 | 1 | 6 | 80 | 354 | 423 | 1.18e-15 | 75.5 |
| MS.gene074464.t1 | MTR_2g090705 | 49.275 | 69 | 30 | 1 | 10 | 78 | 4 | 67 | 2.84e-15 | 73.6 |
| MS.gene074464.t1 | MTR_4g109510 | 53.731 | 67 | 29 | 1 | 12 | 78 | 10 | 74 | 1.72e-14 | 72.0 |
| MS.gene074464.t1 | MTR_4g015840 | 46.377 | 69 | 32 | 1 | 10 | 78 | 4 | 67 | 2.44e-14 | 71.2 |
| MS.gene074464.t1 | MTR_2g014470 | 43.478 | 69 | 34 | 1 | 10 | 78 | 4 | 67 | 3.79e-14 | 70.5 |
| MS.gene074464.t1 | MTR_4g078850 | 44.928 | 69 | 33 | 1 | 10 | 78 | 4 | 67 | 5.01e-14 | 70.1 |
| MS.gene074464.t1 | MTR_7g092380 | 44.048 | 84 | 40 | 2 | 4 | 86 | 16 | 93 | 1.23e-13 | 68.6 |
| MS.gene074464.t1 | MTR_2g436580 | 45.000 | 80 | 37 | 2 | 9 | 88 | 109 | 181 | 1.78e-13 | 67.4 |
| MS.gene074464.t1 | MTR_3g108020 | 43.478 | 69 | 34 | 1 | 10 | 78 | 4 | 67 | 2.96e-13 | 67.8 |
| MS.gene074464.t1 | MTR_5g065860 | 39.362 | 94 | 42 | 3 | 7 | 96 | 45 | 127 | 3.19e-13 | 65.1 |
| MS.gene074464.t1 | MTR_7g109340 | 50.000 | 68 | 28 | 2 | 11 | 78 | 27 | 88 | 2.57e-12 | 65.5 |
| MS.gene074464.t1 | MTR_1g110310 | 41.558 | 77 | 39 | 1 | 10 | 86 | 16 | 86 | 2.67e-12 | 65.5 |
| MS.gene074464.t1 | MTR_1g052110 | 43.662 | 71 | 34 | 1 | 8 | 78 | 36 | 100 | 4.15e-12 | 64.3 |
| MS.gene074464.t1 | MTR_6g027110 | 47.143 | 70 | 34 | 2 | 10 | 78 | 2 | 69 | 5.25e-12 | 61.6 |
| MS.gene074464.t1 | MTR_5g012530 | 42.857 | 70 | 37 | 1 | 10 | 79 | 12 | 78 | 1.15e-11 | 63.9 |
| MS.gene074464.t1 | MTR_2g436560 | 41.250 | 80 | 40 | 2 | 1 | 80 | 95 | 167 | 2.41e-11 | 62.8 |
| MS.gene074464.t1 | MTR_6g027030 | 47.143 | 70 | 34 | 2 | 10 | 78 | 2 | 69 | 2.45e-11 | 61.2 |
| MS.gene074464.t1 | MTR_3g087030 | 44.928 | 69 | 31 | 1 | 10 | 78 | 82 | 143 | 3.10e-11 | 62.4 |
| MS.gene074464.t1 | MTR_6g026940 | 48.485 | 66 | 31 | 2 | 10 | 74 | 2 | 65 | 3.39e-11 | 60.5 |
| MS.gene074464.t1 | MTR_7g109430 | 40.625 | 96 | 44 | 4 | 4 | 88 | 90 | 183 | 3.94e-11 | 62.4 |
| MS.gene074464.t1 | MTR_3g027580 | 46.429 | 84 | 38 | 2 | 8 | 90 | 87 | 164 | 5.19e-11 | 61.6 |
| MS.gene074464.t1 | MTR_7g069480 | 42.466 | 73 | 35 | 1 | 7 | 79 | 24 | 89 | 8.84e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074464.t1 | AT3G14200 | 71.545 | 123 | 29 | 3 | 10 | 129 | 12 | 131 | 1.41e-57 | 182 |
| MS.gene074464.t1 | AT1G72416 | 63.810 | 105 | 25 | 2 | 10 | 109 | 5 | 101 | 4.53e-40 | 136 |
| MS.gene074464.t1 | AT1G72416 | 65.049 | 103 | 23 | 2 | 10 | 107 | 5 | 99 | 5.33e-40 | 135 |
| MS.gene074464.t1 | AT1G72416 | 65.049 | 103 | 23 | 2 | 10 | 107 | 5 | 99 | 7.89e-40 | 135 |
| MS.gene074464.t1 | AT1G72416 | 65.049 | 103 | 23 | 2 | 10 | 107 | 5 | 99 | 1.37e-39 | 135 |
| MS.gene074464.t1 | AT1G56300 | 49.624 | 133 | 58 | 4 | 1 | 129 | 1 | 128 | 4.16e-33 | 117 |
| MS.gene074464.t1 | AT1G71000 | 48.611 | 144 | 58 | 6 | 4 | 139 | 2 | 137 | 6.80e-33 | 117 |
| MS.gene074464.t1 | AT1G71000 | 51.351 | 111 | 43 | 3 | 4 | 110 | 2 | 105 | 2.15e-28 | 105 |
| MS.gene074464.t1 | AT1G56300 | 51.818 | 110 | 47 | 3 | 1 | 106 | 1 | 108 | 4.64e-28 | 103 |
| MS.gene074464.t1 | AT1G72416 | 73.469 | 49 | 13 | 0 | 61 | 109 | 10 | 58 | 1.23e-18 | 79.7 |
| MS.gene074464.t1 | AT5G01390 | 49.275 | 69 | 30 | 1 | 10 | 78 | 4 | 67 | 1.92e-15 | 73.2 |
| MS.gene074464.t1 | AT5G01390 | 49.275 | 69 | 30 | 1 | 10 | 78 | 4 | 67 | 3.55e-15 | 72.8 |
| MS.gene074464.t1 | AT5G01390 | 49.275 | 69 | 30 | 1 | 10 | 78 | 4 | 67 | 5.17e-15 | 73.2 |
| MS.gene074464.t1 | AT1G59725 | 46.377 | 69 | 33 | 1 | 10 | 78 | 4 | 68 | 5.39e-15 | 72.8 |
| MS.gene074464.t1 | AT5G01390 | 49.275 | 69 | 30 | 1 | 10 | 78 | 4 | 67 | 7.48e-15 | 71.2 |
| MS.gene074464.t1 | AT5G49060 | 46.914 | 81 | 35 | 3 | 7 | 86 | 96 | 169 | 1.14e-14 | 72.0 |
| MS.gene074464.t1 | AT5G49060 | 46.914 | 81 | 35 | 3 | 7 | 86 | 96 | 169 | 1.14e-14 | 72.0 |
| MS.gene074464.t1 | AT5G03160 | 46.667 | 75 | 35 | 1 | 6 | 80 | 366 | 435 | 1.38e-14 | 72.4 |
| MS.gene074464.t1 | AT5G25530 | 44.928 | 69 | 33 | 1 | 10 | 78 | 4 | 67 | 3.28e-14 | 70.9 |
| MS.gene074464.t1 | AT4G28480 | 46.377 | 69 | 32 | 1 | 10 | 78 | 4 | 67 | 3.63e-14 | 70.1 |
| MS.gene074464.t1 | AT3G08910 | 46.377 | 69 | 32 | 1 | 10 | 78 | 4 | 67 | 3.77e-14 | 70.5 |
| MS.gene074464.t1 | AT4G28480 | 46.377 | 69 | 32 | 1 | 10 | 78 | 4 | 67 | 6.09e-14 | 70.1 |
| MS.gene074464.t1 | AT3G47940 | 42.857 | 70 | 36 | 1 | 10 | 79 | 4 | 69 | 1.96e-13 | 68.6 |
| MS.gene074464.t1 | AT2G35720 | 42.308 | 78 | 42 | 1 | 2 | 79 | 7 | 81 | 2.63e-13 | 68.6 |
| MS.gene074464.t1 | AT1G10350 | 42.029 | 69 | 35 | 1 | 10 | 78 | 4 | 67 | 2.68e-13 | 68.2 |
| MS.gene074464.t1 | AT5G16650 | 39.024 | 82 | 43 | 2 | 3 | 83 | 4 | 79 | 3.07e-13 | 64.7 |
| MS.gene074464.t1 | AT2G20560 | 44.928 | 69 | 33 | 1 | 10 | 78 | 4 | 67 | 4.08e-13 | 67.8 |
| MS.gene074464.t1 | AT5G16650 | 39.024 | 82 | 43 | 2 | 3 | 83 | 4 | 79 | 7.78e-13 | 64.7 |
| MS.gene074464.t1 | AT3G12170 | 38.793 | 116 | 61 | 4 | 1 | 113 | 1 | 109 | 1.01e-12 | 65.9 |
| MS.gene074464.t1 | AT3G12170 | 38.793 | 116 | 61 | 4 | 1 | 113 | 37 | 145 | 1.76e-12 | 65.5 |
| MS.gene074464.t1 | AT2G33735 | 50.704 | 71 | 25 | 2 | 10 | 78 | 22 | 84 | 3.03e-12 | 61.6 |
| MS.gene074464.t1 | AT2G33735 | 50.704 | 71 | 25 | 2 | 10 | 78 | 22 | 84 | 3.03e-12 | 61.6 |
| MS.gene074464.t1 | AT4G39960 | 39.785 | 93 | 43 | 3 | 9 | 97 | 84 | 167 | 4.04e-12 | 65.1 |
| MS.gene074464.t1 | AT4G39960 | 39.785 | 93 | 43 | 3 | 9 | 97 | 84 | 167 | 4.04e-12 | 65.1 |
| MS.gene074464.t1 | AT5G06910 | 36.029 | 136 | 52 | 6 | 1 | 130 | 19 | 125 | 5.35e-12 | 63.9 |
| MS.gene074464.t1 | AT5G25530 | 40.260 | 77 | 33 | 2 | 10 | 78 | 4 | 75 | 1.27e-11 | 63.5 |
| MS.gene074464.t1 | AT1G80030 | 42.254 | 71 | 34 | 1 | 8 | 78 | 73 | 136 | 1.86e-11 | 63.2 |
| MS.gene074464.t1 | AT1G80030 | 42.254 | 71 | 34 | 1 | 8 | 78 | 73 | 136 | 2.23e-11 | 63.2 |
| MS.gene074464.t1 | AT1G80030 | 42.254 | 71 | 34 | 1 | 8 | 78 | 73 | 136 | 2.23e-11 | 63.2 |
| MS.gene074464.t1 | AT1G80030 | 42.254 | 71 | 34 | 1 | 8 | 78 | 73 | 136 | 2.23e-11 | 63.2 |
| MS.gene074464.t1 | AT5G48030 | 31.788 | 151 | 88 | 4 | 8 | 151 | 92 | 234 | 3.04e-11 | 62.4 |
| MS.gene074464.t1 | AT3G62600 | 48.529 | 68 | 29 | 2 | 11 | 78 | 27 | 88 | 3.86e-11 | 62.0 |
Find 42 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCTACTCAGATGAATTA+TGG | 0.200136 | 8.2:+73395373 | MS.gene074464:CDS |
| AATTACCAGAACTTCTGTTT+TGG | 0.275933 | 8.2:+73395427 | MS.gene074464:CDS |
| CAATGATTTCTATGCAGTTT+TGG | 0.279803 | 8.2:+73392838 | MS.gene074464:CDS |
| CCAGATCGTTGTTCAGCTTC+AGG | 0.283002 | 8.2:+73393182 | MS.gene074464:CDS |
| GGCTCACATTTGATTTAGTT+TGG | 0.297419 | 8.2:-73394531 | None:intergenic |
| CAAGCGGATATCGGATTAAA+TGG | 0.298600 | 8.2:+73395268 | MS.gene074464:CDS |
| GCAGAGGATTCTTCTAGTTT+TGG | 0.305479 | 8.2:+73395400 | MS.gene074464:CDS |
| AGCACCTCTCTTAATGCTTC+GGG | 0.329574 | 8.2:+73395292 | MS.gene074464:CDS |
| TTATATGTGATACAGGAAAA+TGG | 0.333099 | 8.2:+73395199 | MS.gene074464:intron |
| GCAATTCAAGAAGCCTATTC+TGG | 0.348966 | 8.2:+73393245 | MS.gene074464:CDS |
| AGAAGCTAAGAAGAAATTTC+AGG | 0.357982 | 8.2:+73393223 | MS.gene074464:CDS |
| TCATCTACTTTCATGACTTT+CGG | 0.362653 | 8.2:+73395325 | MS.gene074464:CDS |
| AAGCACCTCTCTTAATGCTT+CGG | 0.391365 | 8.2:+73395291 | MS.gene074464:CDS |
| GATATGTTTCAAGCGGATAT+CGG | 0.410739 | 8.2:+73395259 | MS.gene074464:CDS |
| ATTCTACTCAGATGAATTAT+GGG | 0.423184 | 8.2:+73395374 | MS.gene074464:CDS |
| TGACCCCAAAACAGAAGTTC+TGG | 0.428777 | 8.2:-73395432 | None:intergenic |
| CAGATCGTTGTTCAGCTTCA+GGG | 0.447334 | 8.2:+73393183 | MS.gene074464:CDS |
| TGCATGTAAATTACCAGAAT+AGG | 0.452286 | 8.2:-73393258 | None:intergenic |
| AAATGGAGAGGAGAGCTTTG+AGG | 0.455188 | 8.2:+73395216 | MS.gene074464:CDS |
| AATCACAACAATTCATGCTT+CGG | 0.468386 | 8.2:-73395815 | None:intergenic |
| CCTGAAGCTGAACAACGATC+TGG | 0.468892 | 8.2:-73393182 | None:intergenic |
| ATTGTAGTCGTTGGATCGCC+AGG | 0.474857 | 8.2:+73395740 | MS.gene074464:CDS |
| GGGAGACTTTCTGAACGAAA+TGG | 0.482099 | 8.2:+73394495 | MS.gene074464:CDS |
| GGAAATAATATGGCTAATGA+AGG | 0.487826 | 8.2:+73392806 | None:intergenic |
| AATGCACATTTGTTGGATCC+TGG | 0.496638 | 8.2:-73395758 | None:intergenic |
| TGCAACGAATGCACATTTGT+TGG | 0.499635 | 8.2:-73395765 | None:intergenic |
| TCATGACTTTCGGTGAAAGC+GGG | 0.503824 | 8.2:+73395335 | MS.gene074464:CDS |
| GATGCAACTATTGTAGTCGT+TGG | 0.504810 | 8.2:+73395731 | MS.gene074464:CDS |
| AATGCTCTGATTCAGAACTA+AGG | 0.513112 | 8.2:+73392873 | MS.gene074464:CDS |
| TTCAGGGAATGTGAAGTTTG+TGG | 0.516942 | 8.2:+73393199 | MS.gene074464:CDS |
| AGTCATGAAAGTAGATGAAG+TGG | 0.538936 | 8.2:-73395320 | None:intergenic |
| TGCTTATAAGAAACTTGCAC+TGG | 0.543386 | 8.2:+73392898 | MS.gene074464:CDS |
| ACAACAATTCATGCTTCGGA+TGG | 0.573012 | 8.2:-73395811 | None:intergenic |
| TTCATGACTTTCGGTGAAAG+CGG | 0.579461 | 8.2:+73395334 | MS.gene074464:CDS |
| CACCAGTGTTGCTGTTGTCG+AGG | 0.580295 | 8.2:+73395786 | MS.gene074464:CDS |
| GTTTGATGATATGTTTCAAG+CGG | 0.580741 | 8.2:+73395252 | MS.gene074464:CDS |
| ATCCTCGACAACAGCAACAC+TGG | 0.595854 | 8.2:-73395788 | None:intergenic |
| GATGAATTATGGGAAGGCAG+AGG | 0.603296 | 8.2:+73395384 | MS.gene074464:CDS |
| TACTCAGATGAATTATGGGA+AGG | 0.609702 | 8.2:+73395378 | MS.gene074464:CDS |
| TGTGATACAGGAAAATGGAG+AGG | 0.651222 | 8.2:+73395204 | MS.gene074464:intron |
| AAGAGATTAATGTACGACGT+TGG | 0.670458 | 8.2:+73393426 | MS.gene074464:CDS |
| GCAACCCGAAGCATTAAGAG+AGG | 0.689028 | 8.2:-73395296 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGCAAAAATATTAAAT+AGG | - | chr8.2:73394556-73394575 | None:intergenic | 10.0% |
| !! | TATTGCAAAAATATTAAATA+GGG | - | chr8.2:73394555-73394574 | None:intergenic | 10.0% |
| !! | TATTTAAAAAATAATTCAAG+TGG | + | chr8.2:73394892-73394911 | MS.gene074464:intron | 10.0% |
| !! | TTGATTATATGAAAAAAAAT+CGG | - | chr8.2:73394085-73394104 | None:intergenic | 10.0% |
| !!! | ATTACTTGTTTTTATATATT+GGG | + | chr8.2:73393352-73393371 | MS.gene074464:intron | 10.0% |
| !!! | TATTACTTGTTTTTATATAT+TGG | + | chr8.2:73393351-73393370 | MS.gene074464:intron | 10.0% |
| !!! | TTTATATATTTTTTGTTTAG+TGG | + | chr8.2:73394652-73394671 | MS.gene074464:intron | 10.0% |
| !! | AACTTGAATTAATCAATTTA+TGG | - | chr8.2:73395086-73395105 | None:intergenic | 15.0% |
| !! | AGGAAAATAATTTGATTAAA+TGG | + | chr8.2:73393146-73393165 | MS.gene074464:intron | 15.0% |
| !! | TGATTATATGAAAAAAAATC+GGG | - | chr8.2:73394084-73394103 | None:intergenic | 15.0% |
| !!! | AACAAGATATTATTTTATTG+TGG | + | chr8.2:73394933-73394952 | MS.gene074464:intron | 15.0% |
| !!! | CTTTAAATTATACAAGATTT+TGG | + | chr8.2:73395654-73395673 | MS.gene074464:intron | 15.0% |
| !!! | TGAATAAACTTTAGAAAAAA+CGG | - | chr8.2:73392996-73393015 | None:intergenic | 15.0% |
| !!! | TTCTCAATCTATTTTTTAAA+CGG | - | chr8.2:73393774-73393793 | None:intergenic | 15.0% |
| !! | AAAGTGAAAAGGTAAAATTA+AGG | - | chr8.2:73393601-73393620 | None:intergenic | 20.0% |
| !! | AACAAGACATAAACATTATT+AGG | - | chr8.2:73394754-73394773 | None:intergenic | 20.0% |
| !! | AATGAATTGAAAGAGTTAAA+AGG | - | chr8.2:73395151-73395170 | None:intergenic | 20.0% |
| !! | ACAAGTAATAATTTGAATCA+TGG | - | chr8.2:73393341-73393360 | None:intergenic | 20.0% |
| !! | ATGAATATTGAAACTGAATT+AGG | + | chr8.2:73393654-73393673 | MS.gene074464:intron | 20.0% |
| !! | ATTCAGTTTCAATATTCATT+AGG | - | chr8.2:73393653-73393672 | None:intergenic | 20.0% |
| !! | ATTTGAAAATAATTGTTGGA+AGG | + | chr8.2:73394971-73394990 | MS.gene074464:intron | 20.0% |
| !! | CAAGATTTGAAAATAATTGT+TGG | + | chr8.2:73394967-73394986 | MS.gene074464:intron | 20.0% |
| !! | GATTAATTTATATGTGATAC+AGG | + | chr8.2:73395192-73395211 | MS.gene074464:intron | 20.0% |
| !! | TATCTTTCTTTCACAAATTT+AGG | - | chr8.2:73393076-73393095 | None:intergenic | 20.0% |
| !! | TGAATATTGAAACTGAATTA+GGG | + | chr8.2:73393655-73393674 | MS.gene074464:intron | 20.0% |
| !! | TTAACATGTAATTGAGTTAT+GGG | + | chr8.2:73395626-73395645 | MS.gene074464:intron | 20.0% |
| !! | TTATAGCACATCAAAATTAT+TGG | - | chr8.2:73394443-73394462 | None:intergenic | 20.0% |
| !! | TTTAACATGTAATTGAGTTA+TGG | + | chr8.2:73395625-73395644 | MS.gene074464:intron | 20.0% |
| !!! | AATAATGTTTATGTCTTGTT+TGG | + | chr8.2:73394754-73394773 | MS.gene074464:intron | 20.0% |
| !!! | AGTTAAAAGGATTGAAATTT+TGG | - | chr8.2:73395138-73395157 | None:intergenic | 20.0% |
| !!! | ATGATAGAAGATTTAGAATT+TGG | + | chr8.2:73395687-73395706 | MS.gene074464:intron | 20.0% |
| !!! | ATGTAAATGGTGTTTTTTTT+TGG | + | chr8.2:73393381-73393400 | MS.gene074464:intron | 20.0% |
| !!! | GTTTAAAATAGTGACTTAAT+TGG | - | chr8.2:73393962-73393981 | None:intergenic | 20.0% |
| !!! | TGGAAATGAGTTAATTTTTT+AGG | + | chr8.2:73393874-73393893 | MS.gene074464:intron | 20.0% |
| !!! | TGTAAATGGTGTTTTTTTTT+GGG | + | chr8.2:73393382-73393401 | MS.gene074464:intron | 20.0% |
| !!! | TTTCTAAAGTTTATTCACAT+GGG | + | chr8.2:73392999-73393018 | MS.gene074464:intron | 20.0% |
| !!! | TTTGTGAAAGAAAGATATTT+TGG | + | chr8.2:73393079-73393098 | MS.gene074464:intron | 20.0% |
| !!! | TTTTCTAAAGTTTATTCACA+TGG | + | chr8.2:73392998-73393017 | MS.gene074464:intron | 20.0% |
| ! | AAAAAGAGATATGTTCTTCA+AGG | + | chr8.2:73394216-73394235 | MS.gene074464:intron | 25.0% |
| ! | AAAGTTGGAATTGTTTAGAA+AGG | + | chr8.2:73393126-73393145 | MS.gene074464:intron | 25.0% |
| ! | AACAATGATATGGTCAATTT+CGG | + | chr8.2:73393829-73393848 | MS.gene074464:intron | 25.0% |
| ! | AAGAGGAGAAGAAAAATAAT+TGG | - | chr8.2:73394188-73394207 | None:intergenic | 25.0% |
| ! | AATTCTACTCAGATGAATTA+TGG | + | chr8.2:73395373-73395392 | MS.gene074464:CDS | 25.0% |
| ! | AGTAGTAACAACAAAAAGAT+AGG | + | chr8.2:73395602-73395621 | MS.gene074464:intron | 25.0% |
| ! | ATTCATGGAATTGAATCAAA+TGG | + | chr8.2:73394402-73394421 | MS.gene074464:intron | 25.0% |
| ! | ATTCTACTCAGATGAATTAT+GGG | + | chr8.2:73395374-73395393 | MS.gene074464:CDS | 25.0% |
| ! | CAACGAAAACAAGAAAAAAA+TGG | + | chr8.2:73393854-73393873 | MS.gene074464:intron | 25.0% |
| ! | CATAACACAAAAATAGAAGT+AGG | - | chr8.2:73393536-73393555 | None:intergenic | 25.0% |
| ! | GATTCAATTCCATGAATTAT+TGG | - | chr8.2:73394399-73394418 | None:intergenic | 25.0% |
| ! | TAACATGTAATTGAGTTATG+GGG | + | chr8.2:73395627-73395646 | MS.gene074464:intron | 25.0% |
| ! | TGTTTCTTCATTTACTTGAA+GGG | + | chr8.2:73393559-73393578 | MS.gene074464:intron | 25.0% |
| ! | TTATATGTGATACAGGAAAA+TGG | + | chr8.2:73395199-73395218 | MS.gene074464:intron | 25.0% |
| ! | TTGAATGATTGTTTATTGTG+AGG | + | chr8.2:73395550-73395569 | MS.gene074464:intron | 25.0% |
| ! | TTGTTAATGTGAAAGTGAAA+AGG | - | chr8.2:73393612-73393631 | None:intergenic | 25.0% |
| ! | TTTGATTAAATGGACAGAAA+TGG | + | chr8.2:73393156-73393175 | MS.gene074464:intron | 25.0% |
| !! | AATCAATTTATGGAAAGTAC+AGG | - | chr8.2:73395076-73395095 | None:intergenic | 25.0% |
| !! | AATGATTTCTATGCAGTTTT+GGG | + | chr8.2:73392839-73392858 | MS.gene074464:CDS | 25.0% |
| !! | ATAAACTTTAGAAAAAACGG+TGG | - | chr8.2:73392993-73393012 | None:intergenic | 25.0% |
| !! | ATTGTTGTTATGATGAAAGT+TGG | + | chr8.2:73393111-73393130 | MS.gene074464:intron | 25.0% |
| !! | CACTTTCACATTAACAATTT+TGG | + | chr8.2:73393615-73393634 | MS.gene074464:intron | 25.0% |
| !! | TATAAGGATGATTTGATAGT+TGG | + | chr8.2:73393679-73393698 | MS.gene074464:intron | 25.0% |
| !! | TATTGGGTCTAAAATGTAAA+TGG | + | chr8.2:73393368-73393387 | MS.gene074464:intron | 25.0% |
| !! | TTGTTTCTTCATTTACTTGA+AGG | + | chr8.2:73393558-73393577 | MS.gene074464:intron | 25.0% |
| !!! | AAACTGAATTTTGTTTTGCA+GGG | + | chr8.2:73394469-73394488 | MS.gene074464:intron | 25.0% |
| !!! | AACATTTTTTTTTCCTCCTT+TGG | - | chr8.2:73394279-73394298 | None:intergenic | 25.0% |
| !!! | ACATTTTTTTTTCCTCCTTT+GGG | - | chr8.2:73394278-73394297 | None:intergenic | 25.0% |
| !!! | AGTCACTATTTTAAACCTAA+AGG | + | chr8.2:73393966-73393985 | MS.gene074464:intron | 25.0% |
| !!! | TTTTGTTTGCTTGTAATTAG+TGG | + | chr8.2:73394583-73394602 | MS.gene074464:intron | 25.0% |
| AGAAGCTAAGAAGAAATTTC+AGG | + | chr8.2:73393223-73393242 | MS.gene074464:CDS | 30.0% | |
| ATAATTTGAATCATGGCTCA+TGG | - | chr8.2:73393334-73393353 | None:intergenic | 30.0% | |
| ATATGTTCTTCAAGGTTAGT+AGG | + | chr8.2:73394224-73394243 | MS.gene074464:intron | 30.0% | |
| ATGAATGTTGCATCAAATGA+AGG | - | chr8.2:73395488-73395507 | None:intergenic | 30.0% | |
| CAATAAGAGCCAATAATTCA+TGG | + | chr8.2:73394387-73394406 | MS.gene074464:intron | 30.0% | |
| GAAACTGAATTAGGGATATA+AGG | + | chr8.2:73393663-73393682 | MS.gene074464:intron | 30.0% | |
| GGAGAAGAAAAATAATTGGA+CGG | - | chr8.2:73394184-73394203 | None:intergenic | 30.0% | |
| GTTTCAATATTCATTAGGCA+TGG | - | chr8.2:73393648-73393667 | None:intergenic | 30.0% | |
| TAATTGTTGGAAGGATAAAG+TGG | + | chr8.2:73394980-73394999 | MS.gene074464:intron | 30.0% | |
| TAATTTGAATCATGGCTCAT+GGG | - | chr8.2:73393333-73393352 | None:intergenic | 30.0% | |
| TCATCTACTTTCATGACTTT+CGG | + | chr8.2:73395325-73395344 | MS.gene074464:CDS | 30.0% | |
| TGCATGTAAATTACCAGAAT+AGG | - | chr8.2:73393261-73393280 | None:intergenic | 30.0% | |
| TTCATTTGATGCAACATTCA+TGG | + | chr8.2:73395487-73395506 | MS.gene074464:intron | 30.0% | |
| TTTGGGAAAAGACATTTGTT+GGG | - | chr8.2:73394261-73394280 | None:intergenic | 30.0% | |
| ! | AATTACCAGAACTTCTGTTT+TGG | + | chr8.2:73395427-73395446 | MS.gene074464:CDS | 30.0% |
| ! | ATTACCAGAACTTCTGTTTT+GGG | + | chr8.2:73395428-73395447 | MS.gene074464:CDS | 30.0% |
| ! | CAATGATTTCTATGCAGTTT+TGG | + | chr8.2:73392838-73392857 | MS.gene074464:CDS | 30.0% |
| ! | GTTTGATGATATGTTTCAAG+CGG | + | chr8.2:73395252-73395271 | MS.gene074464:CDS | 30.0% |
| !!! | AATTTTGTTTTGCAGGGTAT+GGG | + | chr8.2:73394475-73394494 | MS.gene074464:intron | 30.0% |
| !!! | GAAACTGAATTTTGTTTTGC+AGG | + | chr8.2:73394468-73394487 | MS.gene074464:intron | 30.0% |
| AAGAGATTAATGTACGACGT+TGG | + | chr8.2:73393426-73393445 | MS.gene074464:CDS | 35.0% | |
| AATGCTCTGATTCAGAACTA+AGG | + | chr8.2:73392873-73392892 | MS.gene074464:CDS | 35.0% | |
| AATTAGTGGAACGTTAGGTT+AGG | + | chr8.2:73394597-73394616 | MS.gene074464:intron | 35.0% | |
| ACACCAACTATCATAGCAAT+TGG | - | chr8.2:73394781-73394800 | None:intergenic | 35.0% | |
| AGGCACAACTACATAGTATT+AGG | - | chr8.2:73394710-73394729 | None:intergenic | 35.0% | |
| AGTCATGAAAGTAGATGAAG+TGG | - | chr8.2:73395323-73395342 | None:intergenic | 35.0% | |
| ATTTCACACCATTCATGAGT+TGG | + | chr8.2:73393488-73393507 | MS.gene074464:intron | 35.0% | |
| CATGGAATTGAATCAAATGG+AGG | + | chr8.2:73394405-73394424 | MS.gene074464:intron | 35.0% | |
| CTTGTAATTAGTGGAACGTT+AGG | + | chr8.2:73394592-73394611 | MS.gene074464:intron | 35.0% | |
| GATATGTTTCAAGCGGATAT+CGG | + | chr8.2:73395259-73395278 | MS.gene074464:CDS | 35.0% | |
| GGCAAACATATAGCATAGTA+AGG | + | chr8.2:73395508-73395527 | MS.gene074464:intron | 35.0% | |
| GGTTAGAGTAGAAACAAAGA+CGG | - | chr8.2:73392965-73392984 | None:intergenic | 35.0% | |
| TACTCAGATGAATTATGGGA+AGG | + | chr8.2:73395378-73395397 | MS.gene074464:CDS | 35.0% | |
| TATGTGTCACATAACACATG+TGG | + | chr8.2:73394339-73394358 | MS.gene074464:intron | 35.0% | |
| TCACTGTCTTCTTTACCTTT+AGG | - | chr8.2:73393984-73394003 | None:intergenic | 35.0% | |
| TGAGAATGAATTTCCTCTCT+TGG | + | chr8.2:73393788-73393807 | MS.gene074464:intron | 35.0% | |
| TGCTTATAAGAAACTTGCAC+TGG | + | chr8.2:73392898-73392917 | MS.gene074464:CDS | 35.0% | |
| TGTTACTACTTACTACCCAT+AGG | - | chr8.2:73395592-73395611 | None:intergenic | 35.0% | |
| TTAAAGATCAGAGTGATGAG+CGG | + | chr8.2:73393710-73393729 | MS.gene074464:intron | 35.0% | |
| TTGACCATATCATTGTTTCG+TGG | - | chr8.2:73393826-73393845 | None:intergenic | 35.0% | |
| TTTCACACCATTCATGAGTT+GGG | + | chr8.2:73393489-73393508 | MS.gene074464:intron | 35.0% | |
| ! | AACTTTAGAAAAAACGGTGG+AGG | - | chr8.2:73392990-73393009 | None:intergenic | 35.0% |
| ! | AAGGATGATTTGATAGTTGG+TGG | + | chr8.2:73393682-73393701 | MS.gene074464:intron | 35.0% |
| ! | AATTGCTATGATAGTTGGTG+TGG | + | chr8.2:73394780-73394799 | MS.gene074464:intron | 35.0% |
| ! | ACTTTAGAAAAAACGGTGGA+GGG | - | chr8.2:73392989-73393008 | None:intergenic | 35.0% |
| ! | AGGATGATTTGATAGTTGGT+GGG | + | chr8.2:73393683-73393702 | MS.gene074464:intron | 35.0% |
| ! | AGTTGTGCCTTTTTACCTTT+TGG | + | chr8.2:73394720-73394739 | MS.gene074464:intron | 35.0% |
| ! | CAACAAATGTCTTTTCCCAA+AGG | + | chr8.2:73394260-73394279 | MS.gene074464:intron | 35.0% |
| ! | CCTTTATTTGTTTGGCCTAT+GGG | + | chr8.2:73395574-73395593 | MS.gene074464:intron | 35.0% |
| ! | CTTTGGGAAAAGACATTTGT+TGG | - | chr8.2:73394262-73394281 | None:intergenic | 35.0% |
| ! | GGCTCACATTTGATTTAGTT+TGG | - | chr8.2:73394534-73394553 | None:intergenic | 35.0% |
| ! | GTTGTGCCTTTTTACCTTTT+GGG | + | chr8.2:73394721-73394740 | MS.gene074464:intron | 35.0% |
| ! | TCCTTTATTTGTTTGGCCTA+TGG | + | chr8.2:73395573-73395592 | MS.gene074464:intron | 35.0% |
| ! | TGTGAGGTCCTTTATTTGTT+TGG | + | chr8.2:73395566-73395585 | MS.gene074464:intron | 35.0% |
| ! | TTACCAGAACTTCTGTTTTG+GGG | + | chr8.2:73395429-73395448 | MS.gene074464:CDS | 35.0% |
| ! | TTGGGAAAAGACATTTGTTG+GGG | - | chr8.2:73394260-73394279 | None:intergenic | 35.0% |
| !!! | CCTTTTTACCTTTTGGGATT+GGG | + | chr8.2:73394727-73394746 | MS.gene074464:intron | 35.0% |
| !!! | GAATTTTGTTTTGCAGGGTA+TGG | + | chr8.2:73394474-73394493 | MS.gene074464:intron | 35.0% |
| !!! | TCTCTTTTTTCACGTGAAAG+AGG | - | chr8.2:73394205-73394224 | None:intergenic | 35.0% |
| !!! | TGCAGTTTTGGGATTGAATA+AGG | + | chr8.2:73392850-73392869 | MS.gene074464:CDS | 35.0% |
| AAGCACCTCTCTTAATGCTT+CGG | + | chr8.2:73395291-73395310 | MS.gene074464:CDS | 40.0% | |
| AGGCAAGTGAAAGAGAAAGA+GGG | - | chr8.2:73393516-73393535 | None:intergenic | 40.0% | |
| ATAAAGTGGTTTACTGGACC+GGG | + | chr8.2:73394994-73395013 | MS.gene074464:intron | 40.0% | |
| CAAGCGGATATCGGATTAAA+TGG | + | chr8.2:73395268-73395287 | MS.gene074464:CDS | 40.0% | |
| CCCAATCCCAAAAGGTAAAA+AGG | - | chr8.2:73394730-73394749 | None:intergenic | 40.0% | |
| CCCATAGGCCAAACAAATAA+AGG | - | chr8.2:73395577-73395596 | None:intergenic | 40.0% | |
| GAAGCAAATATGACCAAGAG+AGG | - | chr8.2:73393804-73393823 | None:intergenic | 40.0% | |
| GATAAAGTGGTTTACTGGAC+CGG | + | chr8.2:73394993-73395012 | MS.gene074464:intron | 40.0% | |
| GATGCAACTATTGTAGTCGT+TGG | + | chr8.2:73395731-73395750 | MS.gene074464:CDS | 40.0% | |
| GCAATTCAAGAAGCCTATTC+TGG | + | chr8.2:73393245-73393264 | MS.gene074464:CDS | 40.0% | |
| GCTTCCACGAAACAATGATA+TGG | + | chr8.2:73393819-73393838 | MS.gene074464:intron | 40.0% | |
| GGAAGGATAAAGTGGTTTAC+TGG | + | chr8.2:73394988-73395007 | MS.gene074464:intron | 40.0% | |
| GGTCCAATTGCTATGATAGT+TGG | + | chr8.2:73394775-73394794 | MS.gene074464:intron | 40.0% | |
| TAAAGATCAGAGTGATGAGC+GGG | + | chr8.2:73393711-73393730 | MS.gene074464:intron | 40.0% | |
| TAGGCAAGTGAAAGAGAAAG+AGG | - | chr8.2:73393517-73393536 | None:intergenic | 40.0% | |
| TATTAGGACCCAATCCCAAA+AGG | - | chr8.2:73394738-73394757 | None:intergenic | 40.0% | |
| TGCAACGAATGCACATTTGT+TGG | - | chr8.2:73395768-73395787 | None:intergenic | 40.0% | |
| TGTGATACAGGAAAATGGAG+AGG | + | chr8.2:73395204-73395223 | MS.gene074464:intron | 40.0% | |
| TTCAGGGAATGTGAAGTTTG+TGG | + | chr8.2:73393199-73393218 | MS.gene074464:CDS | 40.0% | |
| TTCATGACTTTCGGTGAAAG+CGG | + | chr8.2:73395334-73395353 | MS.gene074464:CDS | 40.0% | |
| ! | AATGCACATTTGTTGGATCC+TGG | - | chr8.2:73395761-73395780 | None:intergenic | 40.0% |
| ! | CAAATGTCTTTTCCCAAAGG+AGG | + | chr8.2:73394263-73394282 | MS.gene074464:intron | 40.0% |
| ! | GGATGATTTGATAGTTGGTG+GGG | + | chr8.2:73393684-73393703 | MS.gene074464:intron | 40.0% |
| !!! | GCAGAGGATTCTTCTAGTTT+TGG | + | chr8.2:73395400-73395419 | MS.gene074464:CDS | 40.0% |
| !!! | GCCTTTTTACCTTTTGGGAT+TGG | + | chr8.2:73394726-73394745 | MS.gene074464:intron | 40.0% |
| AAATGGAGAGGAGAGCTTTG+AGG | + | chr8.2:73395216-73395235 | MS.gene074464:CDS | 45.0% | |
| AGCACCTCTCTTAATGCTTC+GGG | + | chr8.2:73395292-73395311 | MS.gene074464:CDS | 45.0% | |
| CAGATCGTTGTTCAGCTTCA+GGG | + | chr8.2:73393183-73393202 | MS.gene074464:CDS | 45.0% | |
| GATGAATTATGGGAAGGCAG+AGG | + | chr8.2:73395384-73395403 | MS.gene074464:CDS | 45.0% | |
| GGGAGACTTTCTGAACGAAA+TGG | + | chr8.2:73394495-73394514 | MS.gene074464:CDS | 45.0% | |
| TATTGTACGAACACACAGCC+CGG | - | chr8.2:73395015-73395034 | None:intergenic | 45.0% | |
| TCACATAACACATGTGGCAG+TGG | + | chr8.2:73394345-73394364 | MS.gene074464:intron | 45.0% | |
| TCATGACTTTCGGTGAAAGC+GGG | + | chr8.2:73395335-73395354 | MS.gene074464:CDS | 45.0% | |
| TGACCCCAAAACAGAAGTTC+TGG | - | chr8.2:73395435-73395454 | None:intergenic | 45.0% | |
| TTAGAAAAAACGGTGGAGGG+TGG | - | chr8.2:73392986-73393005 | None:intergenic | 45.0% | |
| ! | CTATGATAGTTGGTGTGGTG+GGG | + | chr8.2:73394785-73394804 | MS.gene074464:intron | 45.0% |
| ! | GCTATGATAGTTGGTGTGGT+GGG | + | chr8.2:73394784-73394803 | MS.gene074464:intron | 45.0% |
| ! | TATGATAGTTGGTGTGGTGG+GGG | + | chr8.2:73394786-73394805 | MS.gene074464:intron | 45.0% |
| ! | TGCTATGATAGTTGGTGTGG+TGG | + | chr8.2:73394783-73394802 | MS.gene074464:intron | 45.0% |
| ! | TGTGGTGGGGGTATATTGTT+GGG | + | chr8.2:73394798-73394817 | MS.gene074464:intron | 45.0% |
| !!! | AAATTATATATTTTTTTTCA+TGG | + | chr8.2:73393030-73393049 | MS.gene074464:intron | 5.0% |
| AGAGGGTCCCAACTCATGAA+TGG | - | chr8.2:73393499-73393518 | None:intergenic | 50.0% | |
| ATCCTCGACAACAGCAACAC+TGG | - | chr8.2:73395791-73395810 | None:intergenic | 50.0% | |
| ATTGTAGTCGTTGGATCGCC+AGG | + | chr8.2:73395740-73395759 | MS.gene074464:CDS | 50.0% | |
| CCAGATCGTTGTTCAGCTTC+AGG | + | chr8.2:73393182-73393201 | MS.gene074464:CDS | 50.0% | |
| CCTGAAGCTGAACAACGATC+TGG | - | chr8.2:73393185-73393204 | None:intergenic | 50.0% | |
| ! | GCAACCCGAAGCATTAAGAG+AGG | - | chr8.2:73395299-73395318 | None:intergenic | 50.0% |
| ! | GTGGTGGGGGTATATTGTTG+GGG | + | chr8.2:73394799-73394818 | MS.gene074464:intron | 50.0% |
| ! | GTGTGGTGGGGGTATATTGT+TGG | + | chr8.2:73394797-73394816 | MS.gene074464:intron | 50.0% |
| ! | CACCAGTGTTGCTGTTGTCG+AGG | + | chr8.2:73395786-73395805 | MS.gene074464:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 73392815 | 73395825 | 73392815 | ID=MS.gene074464 |
| chr8.2 | mRNA | 73392815 | 73395825 | 73392815 | ID=MS.gene074464.t1;Parent=MS.gene074464 |
| chr8.2 | exon | 73392815 | 73392919 | 73392815 | ID=MS.gene074464.t1.exon1;Parent=MS.gene074464.t1 |
| chr8.2 | CDS | 73392815 | 73392919 | 73392815 | ID=cds.MS.gene074464.t1;Parent=MS.gene074464.t1 |
| chr8.2 | exon | 73393173 | 73393266 | 73393173 | ID=MS.gene074464.t1.exon2;Parent=MS.gene074464.t1 |
| chr8.2 | CDS | 73393173 | 73393266 | 73393173 | ID=cds.MS.gene074464.t1;Parent=MS.gene074464.t1 |
| chr8.2 | exon | 73393409 | 73393476 | 73393409 | ID=MS.gene074464.t1.exon3;Parent=MS.gene074464.t1 |
| chr8.2 | CDS | 73393409 | 73393476 | 73393409 | ID=cds.MS.gene074464.t1;Parent=MS.gene074464.t1 |
| chr8.2 | exon | 73394490 | 73394546 | 73394490 | ID=MS.gene074464.t1.exon4;Parent=MS.gene074464.t1 |
| chr8.2 | CDS | 73394490 | 73394546 | 73394490 | ID=cds.MS.gene074464.t1;Parent=MS.gene074464.t1 |
| chr8.2 | exon | 73395214 | 73395450 | 73395214 | ID=MS.gene074464.t1.exon5;Parent=MS.gene074464.t1 |
| chr8.2 | CDS | 73395214 | 73395450 | 73395214 | ID=cds.MS.gene074464.t1;Parent=MS.gene074464.t1 |
| chr8.2 | exon | 73395724 | 73395825 | 73395724 | ID=MS.gene074464.t1.exon6;Parent=MS.gene074464.t1 |
| chr8.2 | CDS | 73395724 | 73395825 | 73395724 | ID=cds.MS.gene074464.t1;Parent=MS.gene074464.t1 |
| Gene Sequence |
| Protein sequence |
