AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058498


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058498.t1 MTR_1g014190 98.305 354 4 2 4 357 7 358 0.0 715
MS.gene058498.t1 MTR_1g014190 98.305 354 4 2 4 357 45 396 0.0 714
MS.gene058498.t1 MTR_3g105880 78.693 352 73 2 5 355 8 358 0.0 583
MS.gene058498.t1 MTR_4g007440 69.054 349 101 2 5 353 8 349 0.0 515
MS.gene058498.t1 MTR_3g105880 80.282 284 56 0 5 288 8 291 2.34e-175 490
MS.gene058498.t1 MTR_3g451410 62.252 151 33 1 37 187 51 177 7.81e-61 193
MS.gene058498.t1 MTR_5g024340 29.683 347 174 9 19 355 84 370 2.42e-41 149
MS.gene058498.t1 MTR_3g107880 30.747 348 175 10 7 342 12 305 5.65e-40 144
MS.gene058498.t1 MTR_3g107880 31.176 340 166 10 7 336 69 350 1.21e-39 144
MS.gene058498.t1 MTR_3g107880 31.176 340 166 10 7 336 70 351 1.24e-39 144
MS.gene058498.t1 MTR_4g123080 31.724 290 129 6 18 288 72 311 8.82e-36 134
MS.gene058498.t1 MTR_2g040500 34.364 291 146 9 21 290 221 487 1.14e-35 136
MS.gene058498.t1 MTR_4g123080 31.724 290 129 6 18 288 54 293 1.35e-35 133
MS.gene058498.t1 MTR_5g080680 33.577 274 135 7 20 288 101 332 4.48e-35 132
MS.gene058498.t1 MTR_1g086350 30.982 326 151 10 18 324 61 331 7.30e-35 131
MS.gene058498.t1 MTR_1g086350 30.982 326 151 10 18 324 77 347 1.06e-34 131
MS.gene058498.t1 MTR_3g105730 30.514 331 158 12 16 340 30 294 1.87e-34 129
MS.gene058498.t1 MTR_3g105730 30.514 331 158 12 16 340 8 272 3.57e-34 127
MS.gene058498.t1 MTR_2g033000 32.168 286 133 8 18 288 59 298 2.50e-33 127
MS.gene058498.t1 MTR_1g014640 29.874 318 151 11 15 326 72 323 3.76e-33 126
MS.gene058498.t1 MTR_1g013400 29.874 318 151 11 15 326 72 323 3.76e-33 126
MS.gene058498.t1 MTR_3g091060 29.738 343 161 11 15 347 89 361 5.39e-33 126
MS.gene058498.t1 MTR_4g116420 36.813 182 106 2 155 336 184 356 8.33e-33 126
MS.gene058498.t1 MTR_1g086350 32.129 249 110 5 49 288 16 214 1.91e-31 120
MS.gene058498.t1 MTR_1g115570 30.556 324 150 12 16 333 91 345 5.60e-31 120
MS.gene058498.t1 MTR_5g009370 32.026 306 132 9 1 288 35 282 2.62e-30 118
MS.gene058498.t1 MTR_5g071550 31.208 298 127 11 3 286 104 337 5.66e-30 118
MS.gene058498.t1 MTR_4g094208 27.987 318 152 10 19 327 28 277 6.64e-30 116
MS.gene058498.t1 MTR_1g050520 30.650 323 158 13 19 333 386 650 6.78e-30 120
MS.gene058498.t1 MTR_3g491830 29.565 345 178 8 19 339 59 362 1.38e-29 117
MS.gene058498.t1 MTR_3g464700 31.970 269 119 9 21 283 88 298 1.83e-29 116
MS.gene058498.t1 MTR_6g081850 27.469 324 159 8 27 328 51 320 2.56e-29 115
MS.gene058498.t1 MTR_3g068200 32.258 279 134 10 20 288 92 325 2.80e-29 116
MS.gene058498.t1 MTR_4g125810 31.633 294 135 11 21 293 207 455 4.62e-29 117
MS.gene058498.t1 MTR_3g464650 30.526 285 132 10 5 283 50 274 9.46e-28 111
MS.gene058498.t1 MTR_2g008850 27.358 318 154 10 19 327 32 281 1.42e-26 107
MS.gene058498.t1 MTR_5g080680 34.722 216 103 5 20 230 101 283 1.91e-26 107
MS.gene058498.t1 MTR_5g071550 31.142 289 129 12 3 281 104 332 6.95e-26 107
MS.gene058498.t1 MTR_5g063940 29.749 279 126 11 18 286 32 250 2.30e-25 103
MS.gene058498.t1 MTR_2g008850 27.063 303 145 9 33 327 1 235 3.17e-25 102
MS.gene058498.t1 MTR_3g074610 30.108 279 125 11 18 286 32 250 3.24e-25 103
MS.gene058498.t1 MTR_8g102550 28.895 353 170 15 16 337 98 400 4.74e-25 105
MS.gene058498.t1 MTR_1g015110 27.974 311 134 9 21 293 240 498 1.41e-24 105
MS.gene058498.t1 MTR_5g063940 30.153 262 116 10 33 286 1 203 2.15e-24 100
MS.gene058498.t1 MTR_3g104710 30.204 245 129 7 49 290 286 491 4.46e-23 100
MS.gene058498.t1 MTR_1g028300 29.305 331 163 11 19 333 111 386 1.04e-21 95.5
MS.gene058498.t1 MTR_8g463130 26.959 319 154 12 18 326 32 281 2.18e-21 92.8
MS.gene058498.t1 MTR_8g463130 26.959 319 154 12 18 326 4 253 4.16e-21 91.7
MS.gene058498.t1 MTR_4g094542 25.826 333 161 14 10 326 102 364 1.78e-20 91.7
MS.gene058498.t1 MTR_4g123080 46.739 92 46 1 197 288 110 198 5.45e-20 89.0
MS.gene058498.t1 MTR_3g105730 30.622 209 93 7 15 219 29 189 5.26e-19 85.1
MS.gene058498.t1 MTR_3g032700 26.837 313 135 12 31 300 51 312 1.18e-18 87.0
MS.gene058498.t1 MTR_2g078760 32.203 177 94 6 157 327 98 254 1.59e-18 84.3
MS.gene058498.t1 MTR_1g116260 26.007 273 118 6 48 285 79 302 2.43e-18 85.9
MS.gene058498.t1 MTR_2g078760 32.203 177 94 6 157 327 177 333 3.43e-18 84.7
MS.gene058498.t1 MTR_3g032660 26.518 313 136 12 31 300 51 312 4.86e-18 85.1
MS.gene058498.t1 MTR_8g074930 25.000 292 133 11 30 285 60 301 1.90e-17 83.2
MS.gene058498.t1 MTR_1g016620 28.571 280 146 10 25 284 43 288 3.98e-17 81.6
MS.gene058498.t1 MTR_2g033910 24.528 265 135 6 48 286 74 299 3.23e-16 79.3
MS.gene058498.t1 MTR_7g090530 27.124 306 135 12 49 319 69 321 5.22e-16 79.3
MS.gene058498.t1 MTR_1g112840 25.830 271 121 11 48 285 80 303 6.28e-16 78.6
MS.gene058498.t1 MTR_1g067210 25.475 263 130 9 48 284 75 297 7.32e-16 78.6
MS.gene058498.t1 MTR_1g106855 27.239 268 125 7 46 284 58 284 8.92e-16 77.4
MS.gene058498.t1 MTR_7g080170 28.620 297 157 9 23 284 68 344 1.13e-15 78.6
MS.gene058498.t1 MTR_7g100240 26.217 267 123 9 48 284 70 292 1.23e-15 77.8
MS.gene058498.t1 MTR_1g106855 27.239 268 125 7 46 284 58 284 1.39e-15 77.4
MS.gene058498.t1 MTR_2g078760 38.710 124 59 5 157 274 177 289 5.84e-15 74.7
MS.gene058498.t1 MTR_7g090550 25.606 289 146 8 49 311 70 315 1.44e-14 74.7
MS.gene058498.t1 MTR_7g081020 24.638 276 118 10 48 285 75 298 1.62e-14 73.9
MS.gene058498.t1 MTR_7g081020 24.638 276 118 10 48 285 75 298 1.82e-14 74.3
MS.gene058498.t1 MTR_2g435550 25.817 306 167 10 51 333 94 362 4.34e-14 73.2
MS.gene058498.t1 MTR_7g112490 26.070 257 143 7 49 284 109 339 1.24e-13 72.0
MS.gene058498.t1 MTR_7g112490 26.070 257 143 7 49 284 91 321 1.30e-13 71.6
MS.gene058498.t1 MTR_7g080170 32.258 155 79 4 148 284 90 236 1.32e-13 71.6
MS.gene058498.t1 MTR_8g074930 28.659 164 73 5 157 285 35 189 2.26e-13 70.1
MS.gene058498.t1 MTR_3g101540 27.308 260 112 12 45 285 62 263 2.50e-13 71.2
MS.gene058498.t1 MTR_3g101540 27.308 260 112 12 45 285 62 263 2.50e-13 71.2
MS.gene058498.t1 MTR_2g090190 28.622 283 155 12 25 284 65 323 4.85e-13 70.5
MS.gene058498.t1 MTR_7g021530 35.256 156 73 7 148 284 182 328 4.94e-13 70.1
MS.gene058498.t1 MTR_7g021530 35.256 156 73 7 148 284 132 278 5.04e-13 69.7
MS.gene058498.t1 MTR_2g435550 27.626 257 126 10 51 284 94 313 6.61e-13 69.3
MS.gene058498.t1 MTR_7g021530 35.256 156 73 7 148 284 223 369 7.07e-13 69.7
MS.gene058498.t1 MTR_2g435550 27.626 257 126 10 51 284 80 299 7.10e-13 69.3
MS.gene058498.t1 MTR_4g120410 27.237 257 131 9 49 284 91 312 1.16e-12 68.6
MS.gene058498.t1 MTR_3g032590 29.730 185 80 5 157 300 143 318 1.82e-12 68.6
MS.gene058498.t1 MTR_1g019760 27.734 256 114 11 46 285 62 262 3.11e-12 67.8
MS.gene058498.t1 MTR_1g019760 28.125 256 113 12 46 285 62 262 4.48e-12 67.0
MS.gene058498.t1 MTR_8g017240 31.973 147 74 5 156 284 163 301 2.18e-11 65.1
MS.gene058498.t1 MTR_1g083690 29.605 152 81 4 151 284 167 310 3.55e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058498.t1 AT4G31860 72.126 348 95 1 5 350 8 355 0.0 537
MS.gene058498.t1 AT2G25070 73.494 332 88 0 5 336 8 339 0.0 530
MS.gene058498.t1 AT2G25070 73.494 332 88 0 5 336 8 339 0.0 530
MS.gene058498.t1 AT4G31860 75.704 284 69 0 5 288 8 291 2.00e-167 469
MS.gene058498.t1 AT4G31860 76.493 268 63 0 5 272 8 275 1.56e-157 443
MS.gene058498.t1 AT3G51470 28.613 346 174 7 19 355 27 308 3.35e-38 139
MS.gene058498.t1 AT2G33700 30.915 317 153 7 20 326 84 344 3.60e-38 140
MS.gene058498.t1 AT3G51470 28.613 346 174 7 19 355 71 352 7.98e-38 139
MS.gene058498.t1 AT2G25620 30.330 333 157 9 20 336 89 362 4.10e-37 138
MS.gene058498.t1 AT2G25620 30.330 333 157 9 20 336 89 362 4.10e-37 138
MS.gene058498.t1 AT5G10740 31.546 317 147 10 15 326 28 279 1.15e-36 136
MS.gene058498.t1 AT5G10740 31.546 317 147 10 15 326 28 279 1.15e-36 136
MS.gene058498.t1 AT5G24940 30.915 317 149 11 15 326 28 279 9.13e-36 135
MS.gene058498.t1 AT1G07430 34.266 286 124 10 20 288 120 358 2.81e-35 134
MS.gene058498.t1 AT1G48040 30.372 349 187 10 1 340 59 360 7.56e-34 129
MS.gene058498.t1 AT1G43900 32.803 314 140 10 19 327 122 369 1.09e-33 128
MS.gene058498.t1 AT4G27800 30.000 350 171 11 19 340 58 361 1.36e-33 128
MS.gene058498.t1 AT4G27800 31.148 305 150 8 19 299 58 326 2.24e-33 127
MS.gene058498.t1 AT2G29380 32.566 304 143 11 2 288 56 314 2.53e-33 127
MS.gene058498.t1 AT4G27800 30.921 304 150 8 19 298 58 325 6.80e-33 125
MS.gene058498.t1 AT5G53140 29.429 350 167 12 15 355 96 374 1.81e-32 126
MS.gene058498.t1 AT5G53140 29.429 350 167 12 15 355 96 374 1.81e-32 126
MS.gene058498.t1 AT4G31750 29.874 318 151 12 15 326 28 279 1.90e-32 124
MS.gene058498.t1 AT4G31750 29.874 318 151 12 15 326 28 279 1.90e-32 124
MS.gene058498.t1 AT4G31750 29.874 318 151 12 15 326 28 279 2.33e-32 123
MS.gene058498.t1 AT3G11410 33.096 281 146 9 16 288 100 346 4.16e-32 124
MS.gene058498.t1 AT1G67820 32.609 276 119 9 21 288 85 301 1.68e-30 120
MS.gene058498.t1 AT1G67820 32.609 276 119 9 21 288 121 337 2.67e-30 120
MS.gene058498.t1 AT5G51760 29.444 360 170 11 12 331 71 386 9.81e-30 118
MS.gene058498.t1 AT3G62260 28.179 291 139 6 18 288 75 315 1.13e-29 117
MS.gene058498.t1 AT3G62260 28.179 291 139 6 18 288 76 316 1.18e-29 117
MS.gene058498.t1 AT5G59220 34.043 282 127 11 20 288 111 346 1.22e-29 118
MS.gene058498.t1 AT5G51760 29.444 360 170 11 12 331 101 416 1.32e-29 118
MS.gene058498.t1 AT3G62260 30.435 276 122 6 33 288 1 226 1.89e-29 115
MS.gene058498.t1 AT1G07160 29.819 332 159 12 5 326 109 376 2.92e-29 116
MS.gene058498.t1 AT5G57050 28.228 333 157 11 21 326 113 390 5.44e-29 116
MS.gene058498.t1 AT5G57050 28.228 333 157 11 21 326 73 350 5.63e-29 115
MS.gene058498.t1 AT2G30020 31.529 314 149 12 21 326 140 395 3.82e-28 114
MS.gene058498.t1 AT4G26080 30.169 295 140 8 21 297 129 375 7.02e-28 113
MS.gene058498.t1 AT2G40180 28.840 319 154 12 21 327 129 386 9.68e-28 112
MS.gene058498.t1 AT1G72770 30.259 347 168 12 21 327 190 502 1.06e-27 114
MS.gene058498.t1 AT1G72770 30.259 347 168 12 21 327 190 502 1.06e-27 114
MS.gene058498.t1 AT1G72770 30.259 347 168 12 21 327 190 502 1.06e-27 114
MS.gene058498.t1 AT2G40860 29.073 313 157 12 28 333 302 556 2.46e-27 113
MS.gene058498.t1 AT1G17550 29.795 292 154 9 21 289 189 452 2.82e-27 112
MS.gene058498.t1 AT1G17550 29.795 292 154 9 21 289 189 452 2.82e-27 112
MS.gene058498.t1 AT2G40860 29.073 313 157 12 28 333 400 654 2.82e-27 113
MS.gene058498.t1 AT1G18030 29.231 325 152 12 27 328 81 350 3.01e-26 107
MS.gene058498.t1 AT3G17250 26.625 323 179 9 29 340 127 402 7.94e-25 104
MS.gene058498.t1 AT2G40860 29.057 265 132 8 28 285 400 615 2.26e-24 104
MS.gene058498.t1 AT1G78200 27.044 318 158 11 19 327 31 283 3.01e-24 100
MS.gene058498.t1 AT1G78200 27.044 318 158 11 19 327 31 283 3.01e-24 100
MS.gene058498.t1 AT1G78200 27.044 318 158 11 19 327 31 283 3.01e-24 100
MS.gene058498.t1 AT1G34750 28.622 283 131 12 13 286 30 250 4.98e-23 97.4
MS.gene058498.t1 AT1G34750 28.622 283 131 12 13 286 30 250 4.98e-23 97.4
MS.gene058498.t1 AT1G34750 28.622 283 131 12 13 286 30 250 4.98e-23 97.4
MS.gene058498.t1 AT3G12620 26.557 305 147 7 31 300 65 327 9.38e-23 98.6
MS.gene058498.t1 AT3G12620 26.557 305 147 7 31 300 65 327 9.38e-23 98.6
MS.gene058498.t1 AT1G78200 26.403 303 150 9 33 327 1 238 1.84e-22 95.1
MS.gene058498.t1 AT1G78200 26.403 303 150 9 33 327 1 238 1.84e-22 95.1
MS.gene058498.t1 AT1G18030 30.000 270 117 10 27 274 81 300 2.66e-22 95.9
MS.gene058498.t1 AT1G22280 26.730 318 156 12 19 327 32 281 1.89e-21 93.2
MS.gene058498.t1 AT4G28400 32.377 244 98 9 49 285 45 228 2.86e-21 92.4
MS.gene058498.t1 AT4G28400 32.377 244 98 9 49 285 67 250 4.83e-21 92.0
MS.gene058498.t1 AT2G20630 26.316 285 136 8 49 327 63 279 7.08e-21 91.7
MS.gene058498.t1 AT3G15260 27.241 290 137 11 44 327 68 289 8.56e-21 91.7
MS.gene058498.t1 AT3G15260 27.241 290 137 11 44 327 68 289 8.56e-21 91.7
MS.gene058498.t1 AT2G20630 26.740 273 128 8 49 308 63 276 3.64e-20 89.7
MS.gene058498.t1 AT5G59220 35.111 225 96 9 20 231 111 298 4.25e-20 89.7
MS.gene058498.t1 AT3G55050 26.022 269 121 6 48 284 83 305 5.50e-20 90.5
MS.gene058498.t1 AT3G55050 26.022 269 121 6 48 284 83 305 5.50e-20 90.5
MS.gene058498.t1 AT1G22280 26.398 322 158 13 19 327 32 287 1.20e-19 88.2
MS.gene058498.t1 AT1G34750 28.996 269 120 12 13 272 30 236 1.45e-19 87.0
MS.gene058498.t1 AT4G28400 31.967 244 98 10 49 284 67 250 1.41e-18 84.7
MS.gene058498.t1 AT5G02760 26.437 261 128 6 48 284 71 291 4.97e-18 84.7
MS.gene058498.t1 AT2G40860 28.980 245 118 8 28 265 400 595 8.82e-18 85.1
MS.gene058498.t1 AT2G34740 23.509 285 142 11 49 326 119 334 1.37e-17 83.2
MS.gene058498.t1 AT4G33920 27.273 275 119 8 45 284 57 285 3.72e-17 82.4
MS.gene058498.t1 AT4G38520 25.725 276 115 10 48 285 80 303 7.61e-17 81.6
MS.gene058498.t1 AT4G38520 25.725 276 115 10 48 285 80 303 7.61e-17 81.6
MS.gene058498.t1 AT1G16220 28.070 285 167 9 23 284 67 336 2.16e-16 80.5
MS.gene058498.t1 AT4G03415 28.826 281 159 9 25 284 72 332 5.59e-16 79.3
MS.gene058498.t1 AT4G03415 28.826 281 159 9 25 284 72 332 5.59e-16 79.3
MS.gene058498.t1 AT4G03415 28.826 281 159 9 25 284 72 332 5.59e-16 79.3
MS.gene058498.t1 AT5G66080 24.723 271 124 11 48 285 81 304 1.49e-15 77.8
MS.gene058498.t1 AT3G51370 22.727 286 147 7 30 285 60 301 2.23e-15 77.0
MS.gene058498.t1 AT3G51370 22.727 286 147 7 30 285 60 301 2.23e-15 77.0
MS.gene058498.t1 AT3G02750 35.484 155 74 4 148 284 207 353 4.91e-15 76.6
MS.gene058498.t1 AT3G02750 35.484 155 74 4 148 284 207 353 4.91e-15 76.6
MS.gene058498.t1 AT1G79630 27.796 313 152 11 23 284 70 359 1.45e-14 75.1
MS.gene058498.t1 AT1G79630 27.796 313 152 11 23 284 66 355 1.85e-14 74.7
MS.gene058498.t1 AT1G47380 23.398 359 194 15 1 339 12 309 1.88e-14 74.7
MS.gene058498.t1 AT1G79630 33.548 155 77 4 148 284 103 249 2.58e-14 73.9
MS.gene058498.t1 AT1G79630 33.548 155 77 4 148 284 103 249 2.58e-14 73.9
MS.gene058498.t1 AT1G79630 33.548 155 77 4 148 284 103 249 2.58e-14 73.9
MS.gene058498.t1 AT1G79630 33.548 155 77 4 148 284 103 249 2.58e-14 73.9
MS.gene058498.t1 AT1G79630 33.548 155 77 4 148 284 143 289 4.28e-14 73.6
MS.gene058498.t1 AT1G79630 33.548 155 77 4 148 284 143 289 4.28e-14 73.6
MS.gene058498.t1 AT5G36250 27.986 293 162 10 23 284 70 344 4.53e-14 73.6
MS.gene058498.t1 AT3G16800 33.117 154 76 5 151 285 69 214 1.83e-13 70.1
MS.gene058498.t1 AT3G16800 33.117 154 76 5 151 285 69 214 1.83e-13 70.1
MS.gene058498.t1 AT3G16800 33.117 154 76 5 151 285 164 309 2.47e-13 70.9
MS.gene058498.t1 AT3G16800 33.117 154 76 5 151 285 164 309 2.47e-13 70.9
MS.gene058498.t1 AT3G16800 33.117 154 76 5 151 285 164 309 2.47e-13 70.9
MS.gene058498.t1 AT1G03590 27.875 287 151 11 25 284 65 322 5.57e-13 70.1
MS.gene058498.t1 AT3G63340 28.916 249 117 10 156 352 232 472 1.50e-12 69.3
MS.gene058498.t1 AT3G63340 28.916 249 117 10 156 352 232 472 1.50e-12 69.3
MS.gene058498.t1 AT3G63340 28.916 249 117 10 156 352 232 472 1.50e-12 69.3
MS.gene058498.t1 AT3G63340 28.916 249 117 10 156 352 232 472 1.50e-12 69.3
MS.gene058498.t1 AT3G63340 28.916 249 117 10 156 352 232 472 1.52e-12 69.3
MS.gene058498.t1 AT3G63340 28.916 249 117 10 156 352 232 472 1.53e-12 69.3
MS.gene058498.t1 AT3G63340 28.916 249 117 10 156 352 232 472 1.56e-12 69.3
MS.gene058498.t1 AT3G63340 28.916 249 117 10 156 352 232 472 1.56e-12 69.3
MS.gene058498.t1 AT5G27930 29.677 155 83 4 148 284 168 314 1.68e-12 68.6
MS.gene058498.t1 AT5G27930 29.677 155 83 4 148 284 168 314 1.68e-12 68.6
MS.gene058498.t1 AT3G63340 28.916 249 117 10 156 352 232 472 1.80e-12 68.9
MS.gene058498.t1 AT3G63340 28.916 249 117 10 156 352 232 472 1.97e-12 68.6
MS.gene058498.t1 AT4G33920 29.697 165 75 5 155 284 14 172 2.95e-12 66.6
MS.gene058498.t1 AT4G33920 29.697 165 75 5 155 284 44 202 4.27e-12 66.6
MS.gene058498.t1 AT3G05640 29.677 155 83 5 148 284 163 309 6.98e-12 66.2
MS.gene058498.t1 AT3G05640 29.677 155 83 5 148 284 163 309 6.98e-12 66.2
MS.gene058498.t1 AT3G05640 29.677 155 83 5 148 284 163 309 6.98e-12 66.2
MS.gene058498.t1 AT5G66080 26.404 178 91 7 138 285 33 200 9.17e-12 65.5
MS.gene058498.t1 AT3G51370 26.415 159 83 4 157 285 62 216 1.31e-11 65.1
MS.gene058498.t1 AT3G63340 31.609 174 102 7 188 352 340 505 1.90e-11 65.9
MS.gene058498.t1 AT4G08260 29.944 177 101 5 152 326 56 211 1.91e-11 63.5

Find 74 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTATTATCATTGCTTC+TGG 0.154103 1.4:+7879576 None:intergenic
CTACCAATTGTTGGCTTGAT+AGG 0.213993 1.4:+7878173 None:intergenic
CCGGTGTTTGGCGCCATCTT+TGG 0.215436 1.4:-7877190 MS.gene058498:CDS
GTCTTAGGTGATAAGGTAAA+AGG 0.236931 1.4:-7879634 MS.gene058498:CDS
ATTCATGCAGGACGAATTAA+TGG 0.284463 1.4:-7878935 MS.gene058498:CDS
GAAAATGACAATCTTAGATA+TGG 0.340077 1.4:-7880628 MS.gene058498:CDS
TTAAATCTTGCAAGAGCTAT+AGG 0.342994 1.4:-7878908 MS.gene058498:intron
TCCCAGAAGCAATGATAATA+AGG 0.343732 1.4:-7879578 MS.gene058498:CDS
TCCTTATTATCATTGCTTCT+GGG 0.356241 1.4:+7879577 None:intergenic
TCCTTCTCAATCACAAGCTC+AGG 0.385685 1.4:+7878983 None:intergenic
GACTTTGATGGACCAACTTC+AGG 0.394479 1.4:-7879403 MS.gene058498:CDS
CGATAACATGACAATGATAT+TGG 0.399156 1.4:-7877151 MS.gene058498:CDS
TGCCAAGCACCTTCACCAAC+AGG 0.407215 1.4:-7879934 MS.gene058498:CDS
TGGAGGGAATTAGCAGTCTT+AGG 0.418225 1.4:-7879649 MS.gene058498:CDS
AAACTTACAATGTTTATGTC+TGG 0.418978 1.4:+7878531 None:intergenic
CTTCAACTGTTCTCCAATGT+TGG 0.431839 1.4:+7877045 None:intergenic
GTACAAAATCTACCAATTGT+TGG 0.434248 1.4:+7878164 None:intergenic
TACAATGTTTATGTCTGGAT+TGG 0.435988 1.4:+7878536 None:intergenic
GGGCCTCATTCAGACTTTGA+TGG 0.437338 1.4:-7879415 MS.gene058498:CDS
CAAAGGCCCAATCATCACTT+TGG 0.437500 1.4:+7879554 None:intergenic
CCATCTTTGGCTGTTGGTGA+TGG 0.439337 1.4:-7877177 MS.gene058498:CDS
GATAAGGTAAAAGGGTTCAA+TGG 0.446026 1.4:-7879625 MS.gene058498:CDS
TAAGGACCAAAGTGATGATT+GGG 0.447461 1.4:-7879560 MS.gene058498:CDS
ATTCACGCTGCGTAATATCT+AGG 0.452068 1.4:-7879321 MS.gene058498:CDS
ATAAGGACCAAAGTGATGAT+TGG 0.459298 1.4:-7879561 MS.gene058498:CDS
AATGTTTATGTCTGGATTGG+CGG 0.464448 1.4:+7878539 None:intergenic
CGTAATATCTAGGAATGGTC+AGG 0.468140 1.4:-7879311 MS.gene058498:intron
TTGCCTATCAAGCCAACAAT+TGG 0.471715 1.4:-7878176 MS.gene058498:CDS
TGATGATTGGGCCTTTGAAA+AGG 0.472066 1.4:-7879548 MS.gene058498:intron
CACCTGTTGGTGAAGGTGCT+TGG 0.474380 1.4:+7879932 None:intergenic
TGTACGTCAAGAACTTCTCT+TGG 0.476519 1.4:-7878146 MS.gene058498:intron
GGGTTCAATGGAATGATTGA+AGG 0.480510 1.4:-7879613 MS.gene058498:CDS
ATTAGCAGTCTTAGGTGATA+AGG 0.484258 1.4:-7879641 MS.gene058498:CDS
GAATGATTGAAGGATTGATT+CGG 0.488358 1.4:-7879603 MS.gene058498:CDS
GAATACATAGCTGGAGATGT+TGG 0.491063 1.4:-7879897 MS.gene058498:CDS
TTCATGCAGGACGAATTAAT+GGG 0.491284 1.4:-7878934 MS.gene058498:CDS
TGATAGCTTGTGATGGCATA+TGG 0.507088 1.4:-7878282 MS.gene058498:intron
AAGAGTGCTAGACCGGTGTT+TGG 0.509475 1.4:-7877202 MS.gene058498:CDS
AAGGAAAGAATCTATAAAGC+TGG 0.515169 1.4:-7878965 MS.gene058498:CDS
GAAGATGATTGTTCTTGAGC+CGG 0.519349 1.4:+7877093 None:intergenic
TTCGGTGTATATGATGGTCA+TGG 0.519478 1.4:-7880069 MS.gene058498:CDS
TGAGATGATGCGTGGTCAAA+GGG 0.520080 1.4:-7879674 MS.gene058498:CDS
TGCATCATCTGAACCAACAT+TGG 0.520445 1.4:-7877058 MS.gene058498:CDS
TCTTAGGTGATAAGGTAAAA+GGG 0.520980 1.4:-7879633 MS.gene058498:CDS
TTGGCGCCATCTTTGGCTGT+TGG 0.522338 1.4:-7877183 MS.gene058498:CDS
GCAAGGTTGGCGTGCAACAA+TGG 0.523310 1.4:-7880593 MS.gene058498:CDS
CTTCACTCTTGAGCACCTGT+TGG 0.527508 1.4:+7879919 None:intergenic
ACAGGAAACTAAACTTTCTG+AGG 0.527738 1.4:-7877232 MS.gene058498:intron
ACTGCAGACAAGTGCACCGC+CGG 0.530448 1.4:-7877112 MS.gene058498:CDS
CCAAAGATGGCGCCAAACAC+CGG 0.530584 1.4:+7877190 None:intergenic
GGCGGTGCACTTGTCTGCAG+TGG 0.535694 1.4:+7877114 None:intergenic
CAAGCAGTGCTTCCTGAAGT+TGG 0.536448 1.4:+7879391 None:intergenic
GCGTGGTCAAAGGGGATGGA+GGG 0.539500 1.4:-7879665 MS.gene058498:CDS
AAGAGTGAAGAATACATAGC+TGG 0.546958 1.4:-7879906 MS.gene058498:CDS
CCATCACCAACAGCCAAAGA+TGG 0.553018 1.4:+7877177 None:intergenic
TTTGTGAAAGAGTGCTAGAC+CGG 0.555494 1.4:-7877209 MS.gene058498:CDS
TCTTGAGCACCTGTTGGTGA+AGG 0.555714 1.4:+7879925 None:intergenic
TAAACTCATCTTCGTCATGA+AGG 0.558190 1.4:+7878308 None:intergenic
TGATGCGTGGTCAAAGGGGA+TGG 0.565060 1.4:-7879669 MS.gene058498:CDS
GTTTATCATCTATGCAAGGT+TGG 0.584230 1.4:-7880606 MS.gene058498:CDS
TTAATATTCTGCAGGTGACG+TGG 0.584418 1.4:-7878607 MS.gene058498:intron
TGCGTGGTCAAAGGGGATGG+AGG 0.586051 1.4:-7879666 MS.gene058498:CDS
GCATGCGGCGCATCTTGATG+TGG 0.597024 1.4:-7880109 MS.gene058498:CDS
ATGAGATGATGCGTGGTCAA+AGG 0.604481 1.4:-7879675 MS.gene058498:CDS
GGTCCATCAAAGTCTGAATG+AGG 0.607139 1.4:+7879412 None:intergenic
CGCTGCGTAATATCTAGGAA+TGG 0.609929 1.4:-7879316 MS.gene058498:CDS
TCCTGAGCTTGTGATTGAGA+AGG 0.613540 1.4:-7878984 MS.gene058498:CDS
TATGGTTTATCATCTATGCA+AGG 0.620361 1.4:-7880610 MS.gene058498:CDS
GAAAGAATCTATAAAGCTGG+TGG 0.623293 1.4:-7878962 MS.gene058498:CDS
TTTATAGTGATAGCTTGTGA+TGG 0.644189 1.4:-7878289 MS.gene058498:CDS
GATGATTGTTCTTGAGCCGG+CGG 0.663671 1.4:+7877096 None:intergenic
GGTGTATATGATGGTCATGG+AGG 0.706196 1.4:-7880066 MS.gene058498:intron
GAGATGATGCGTGGTCAAAG+GGG 0.732571 1.4:-7879673 MS.gene058498:CDS
AGAATGGATGAGATGATGCG+TGG 0.759110 1.4:-7879682 MS.gene058498:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATATTAAAACATATTAAA+TGG + chr1.4:7879773-7879792 None:intergenic 10.0%
!! TTAAAAAAAAATAACATAAC+AGG + chr1.4:7879183-7879202 None:intergenic 10.0%
!! TTATTTGAACTTATATAATT+TGG - chr1.4:7880382-7880401 MS.gene058498:intron 10.0%
!! AAAAGAATTAAACAAATTCT+AGG + chr1.4:7879282-7879301 None:intergenic 15.0%
!! AAATGACATTTATTAAAATG+GGG + chr1.4:7880164-7880183 None:intergenic 15.0%
!! AGAAATGACATTTATTAAAA+TGG + chr1.4:7880166-7880185 None:intergenic 15.0%
!! AGCATACAAAATAAAATAAT+AGG + chr1.4:7879635-7879654 None:intergenic 15.0%
!! ATTACATTGAAATAATAACT+TGG + chr1.4:7881090-7881109 None:intergenic 15.0%
!! CAAATTGTCATTATTAAATT+TGG - chr1.4:7880785-7880804 MS.gene058498:intron 15.0%
!! CAAATTTAATAATGACAATT+TGG + chr1.4:7880787-7880806 None:intergenic 15.0%
!! GAAATGACATTTATTAAAAT+GGG + chr1.4:7880165-7880184 None:intergenic 15.0%
!! GTTATTATTTCAATGTAATT+TGG - chr1.4:7881091-7881110 MS.gene058498:intron 15.0%
!! TTAAAAAAATCAAATTGTGA+AGG - chr1.4:7880899-7880918 MS.gene058498:intron 15.0%
!!! ATCTTTTTATATTGTAAACA+GGG - chr1.4:7878955-7878974 MS.gene058498:CDS 15.0%
!!! TTAGCATTAATTTGTATAAT+TGG - chr1.4:7879137-7879156 MS.gene058498:intron 15.0%
!!! TTATTTTGTATGCTTTATTT+TGG - chr1.4:7879641-7879660 MS.gene058498:CDS 15.0%
!!! TTTAATTCTTTTTCTTATGT+AGG - chr1.4:7879290-7879309 MS.gene058498:intron 15.0%
!! AAAAAGATCAAATTACAGAA+TGG + chr1.4:7878943-7878962 None:intergenic 20.0%
!! AAATTGAACAAAACTGTTAA+TGG - chr1.4:7880598-7880617 MS.gene058498:CDS 20.0%
!! ATATTGTCTATTGAGAAATA+GGG + chr1.4:7879907-7879926 None:intergenic 20.0%
!! GAATAAAGAGATAAAAGTAA+TGG - chr1.4:7877664-7877683 MS.gene058498:intron 20.0%
!! GTAAAATTTGATTATTTGGA+AGG - chr1.4:7878347-7878366 MS.gene058498:intron 20.0%
!! TAAAATCAAAACTTCACAAT+AGG + chr1.4:7878570-7878589 None:intergenic 20.0%
!! TATAATAGTATTTGTAGTTC+TGG + chr1.4:7880684-7880703 None:intergenic 20.0%
!!! AAAGTTAAAAGCATAATTGA+CGG + chr1.4:7878167-7878186 None:intergenic 20.0%
!!! AATATGTTTTAATATTCTGC+AGG - chr1.4:7879776-7879795 MS.gene058498:intron 20.0%
!!! AGAGTTTTTGAAAAAATTCA+AGG + chr1.4:7877989-7878008 None:intergenic 20.0%
!!! ATATGTTAACACAAATTTTC+AGG - chr1.4:7878413-7878432 MS.gene058498:intron 20.0%
!!! ATGCTTTTAACTTTGTTTAT+TGG - chr1.4:7878173-7878192 MS.gene058498:CDS 20.0%
!!! CAATTTGATTTTTTTAAGTG+TGG + chr1.4:7880896-7880915 None:intergenic 20.0%
!!! GATCTTTTTATATTGTAAAC+AGG - chr1.4:7878954-7878973 MS.gene058498:CDS 20.0%
!!! GGATTTTTTATTACATAGTT+TGG - chr1.4:7877618-7877637 MS.gene058498:intron 20.0%
!!! TCTTTTTATATTGTAAACAG+GGG - chr1.4:7878956-7878975 MS.gene058498:CDS 20.0%
!!! TGAGTTATGAACTATTATTT+TGG - chr1.4:7878677-7878696 MS.gene058498:intron 20.0%
!!! TGTTTTTGGAATTATATCAT+AGG - chr1.4:7880056-7880075 MS.gene058498:intron 20.0%
!!! TTTTATTCAGATATAGCAAT+GGG - chr1.4:7877694-7877713 MS.gene058498:intron 20.0%
! AAACTTACAATGTTTATGTC+TGG + chr1.4:7879863-7879882 None:intergenic 25.0%
! AACCATATACAACAAAAACA+TGG + chr1.4:7877456-7877475 None:intergenic 25.0%
! AATTTGATTATTTGGAAGGA+TGG - chr1.4:7878351-7878370 MS.gene058498:intron 25.0%
! AGGTTAACAAATAAACAGTT+CGG + chr1.4:7880752-7880771 None:intergenic 25.0%
! ATTCATAATCATGAAGAACA+AGG + chr1.4:7877246-7877265 None:intergenic 25.0%
! CATATTGTCTATTGAGAAAT+AGG + chr1.4:7879908-7879927 None:intergenic 25.0%
! CCAAATCAATTAACAAAAAG+AGG + chr1.4:7877573-7877592 None:intergenic 25.0%
! CTAAGGTTAAAACTGAATAA+AGG + chr1.4:7879545-7879564 None:intergenic 25.0%
! GAAAAATTTATCACAAGTTC+AGG - chr1.4:7878624-7878643 MS.gene058498:intron 25.0%
! GAAAATGACAATCTTAGATA+TGG - chr1.4:7877763-7877782 MS.gene058498:intron 25.0%
! GGAGGTAAAATTTGATTATT+TGG - chr1.4:7878343-7878362 MS.gene058498:intron 25.0%
! TAGATTTGCAAAAGTTGTAT+TGG - chr1.4:7877597-7877616 MS.gene058498:intron 25.0%
! TTGTTGAGAAAGAAACAAAA+AGG - chr1.4:7877523-7877542 MS.gene058498:intron 25.0%
! TTTATTAAAATGGGGAATTG+TGG + chr1.4:7880156-7880175 None:intergenic 25.0%
!! AATTCTTTTTCTTACGTTTC+AGG - chr1.4:7880190-7880209 MS.gene058498:intron 25.0%
!! AGTAATGATTCTTTTCAGTT+CGG + chr1.4:7880563-7880582 None:intergenic 25.0%
!! AGTTTTTGTCAAAATCATGA+TGG - chr1.4:7878099-7878118 MS.gene058498:intron 25.0%
!! ATTCTTTTTCTTACGTTTCA+GGG - chr1.4:7880191-7880210 MS.gene058498:intron 25.0%
!! CCTCTTTTTGTTAATTGATT+TGG - chr1.4:7877570-7877589 MS.gene058498:intron 25.0%
!! CTATTTCTCAATAGACAATA+TGG - chr1.4:7879906-7879925 MS.gene058498:CDS 25.0%
!! TCTGAAAACTTTTCAGTTTT+AGG + chr1.4:7877736-7877755 None:intergenic 25.0%
!! TGTTGTTTAATTTCCATTGT+TGG - chr1.4:7877272-7877291 MS.gene058498:intron 25.0%
!!! AGGAAGTTTCCTTTTATTTT+CGG + chr1.4:7879615-7879634 None:intergenic 25.0%
!!! ATGTTTTTGTTGTATATGGT+TGG - chr1.4:7877455-7877474 MS.gene058498:intron 25.0%
!!! ATTTTGGTTATTATGCAGAA+TGG - chr1.4:7878693-7878712 MS.gene058498:intron 25.0%
!!! CTTTTTTGTTACTTTCATAG+TGG + chr1.4:7878657-7878676 None:intergenic 25.0%
!!! GACATAATTTTTTCTGACTA+TGG - chr1.4:7879343-7879362 MS.gene058498:CDS 25.0%
!!! GTTTTATTCAGATATAGCAA+TGG - chr1.4:7877693-7877712 MS.gene058498:intron 25.0%
!!! TTAACACAAATTTTCAGGTA+AGG - chr1.4:7878418-7878437 MS.gene058498:intron 25.0%
!!! TTCCATGTTTTTGTTGTATA+TGG - chr1.4:7877451-7877470 MS.gene058498:intron 25.0%
!!! TTTTGTATGCTTTATTTTGG+AGG - chr1.4:7879644-7879663 MS.gene058498:CDS 25.0%
!!! TTTTTAAGTGTGGTTTGATT+CGG + chr1.4:7880886-7880905 None:intergenic 25.0%
AAATGCTTAGTCAAGAGTTT+CGG - chr1.4:7879943-7879962 MS.gene058498:CDS 30.0%
AACTTGGATCATTATGCTTA+GGG + chr1.4:7881074-7881093 None:intergenic 30.0%
AAGGAAAGAATCTATAAAGC+TGG - chr1.4:7879426-7879445 MS.gene058498:intron 30.0%
ACGAATGAAGAAATGAATGA+TGG + chr1.4:7877077-7877096 None:intergenic 30.0%
ACTAAGATTATCATAGCTCA+AGG + chr1.4:7879589-7879608 None:intergenic 30.0%
ATGCTTAGGGAAAAAAAACT+TGG + chr1.4:7881061-7881080 None:intergenic 30.0%
ATTGTAGAAGCAAGTATATG+TGG - chr1.4:7877933-7877952 MS.gene058498:intron 30.0%
CGAATGAAGAAATGAATGAT+GGG + chr1.4:7877076-7877095 None:intergenic 30.0%
CGATAACATGACAATGATAT+TGG - chr1.4:7881240-7881259 MS.gene058498:intron 30.0%
CTTAGTGTACCGAAAATAAA+AGG - chr1.4:7879603-7879622 MS.gene058498:CDS 30.0%
GAATGAAGAAATGAATGATG+GGG + chr1.4:7877075-7877094 None:intergenic 30.0%
GAATGATTGAAGGATTGATT+CGG - chr1.4:7878788-7878807 MS.gene058498:intron 30.0%
GATAAAGATAGAACCAACAA+TGG + chr1.4:7877288-7877307 None:intergenic 30.0%
GTACAAAATCTACCAATTGT+TGG + chr1.4:7880230-7880249 None:intergenic 30.0%
TAACTTGGATCATTATGCTT+AGG + chr1.4:7881075-7881094 None:intergenic 30.0%
TACAATGTTTATGTCTGGAT+TGG + chr1.4:7879858-7879877 None:intergenic 30.0%
TATGCATTCTCACATGAAAA+TGG + chr1.4:7877165-7877184 None:intergenic 30.0%
TATGGTTTATCATCTATGCA+AGG - chr1.4:7877781-7877800 MS.gene058498:intron 30.0%
TCCTTATTATCATTGCTTCT+GGG + chr1.4:7878817-7878836 None:intergenic 30.0%
TCTTAGGTGATAAGGTAAAA+GGG - chr1.4:7878758-7878777 MS.gene058498:intron 30.0%
TGAATAACAAGGACTGTTTA+TGG - chr1.4:7880513-7880532 MS.gene058498:intron 30.0%
TTAAATCTTGCAAGAGCTAT+AGG - chr1.4:7879483-7879502 MS.gene058498:intron 30.0%
TTCATATACAAGACAGTACT+AGG + chr1.4:7880359-7880378 None:intergenic 30.0%
TTCGGTTTAACAGTTCAATT+TGG - chr1.4:7881006-7881025 MS.gene058498:intron 30.0%
TTGAAGAAGATGCACTTATA+TGG - chr1.4:7879735-7879754 MS.gene058498:intron 30.0%
! ACTGAAAAGTTTTCAGAAGA+TGG - chr1.4:7877739-7877758 MS.gene058498:intron 30.0%
! AGTGTGATTGAATTGTGTTT+TGG - chr1.4:7878125-7878144 MS.gene058498:intron 30.0%
! GTGTGATTGAATTGTGTTTT+GGG - chr1.4:7878126-7878145 MS.gene058498:intron 30.0%
! GTTCACAGTTCTTTTCTTTT+TGG - chr1.4:7880978-7880997 MS.gene058498:intron 30.0%
! TGTGATTGAATTGTGTTTTG+GGG - chr1.4:7878127-7878146 MS.gene058498:intron 30.0%
! TTAAATTTGGCTCAAATTGC+TGG - chr1.4:7880798-7880817 MS.gene058498:intron 30.0%
! TTGTTTCTTTCTCAACAACA+TGG + chr1.4:7877521-7877540 None:intergenic 30.0%
! TTTATAGTGATAGCTTGTGA+TGG - chr1.4:7880102-7880121 MS.gene058498:CDS 30.0%
!!! CTGAATGAGAGTTTTGTTTT+TGG - chr1.4:7880042-7880061 MS.gene058498:intron 30.0%
!!! TTTTTTCTTTTGCTAGCATG+CGG - chr1.4:7878267-7878286 MS.gene058498:intron 30.0%
AACAAGGACTGTTTATGGTT+TGG - chr1.4:7880518-7880537 MS.gene058498:intron 35.0%
AAGAGTGAAGAATACATAGC+TGG - chr1.4:7878485-7878504 MS.gene058498:intron 35.0%
AAGCTTCAACAGAATCATGA+TGG + chr1.4:7878071-7878090 None:intergenic 35.0%
ACAGGAAACTAAACTTTCTG+AGG - chr1.4:7881159-7881178 MS.gene058498:intron 35.0%
ATAAGGACCAAAGTGATGAT+TGG - chr1.4:7878830-7878849 MS.gene058498:intron 35.0%
ATATACACCGAAAAACGAAG+TGG + chr1.4:7878314-7878333 None:intergenic 35.0%
ATTAGCAGTCTTAGGTGATA+AGG - chr1.4:7878750-7878769 MS.gene058498:intron 35.0%
ATTCATGCAGGACGAATTAA+TGG - chr1.4:7879456-7879475 MS.gene058498:intron 35.0%
CAATTTGGTACACAAAGCAA+AGG + chr1.4:7880772-7880791 None:intergenic 35.0%
GAAAGAATCTATAAAGCTGG+TGG - chr1.4:7879429-7879448 MS.gene058498:intron 35.0%
GATAAGGTAAAAGGGTTCAA+TGG - chr1.4:7878766-7878785 MS.gene058498:intron 35.0%
GGTATAAAGGTTCCAATCAT+CGG - chr1.4:7880639-7880658 MS.gene058498:CDS 35.0%
GTACTTGTATGCATGTTGTT+TGG - chr1.4:7879678-7879697 MS.gene058498:CDS 35.0%
GTCCTTATTATCATTGCTTC+TGG + chr1.4:7878818-7878837 None:intergenic 35.0%
GTCTTAGGTGATAAGGTAAA+AGG - chr1.4:7878757-7878776 MS.gene058498:intron 35.0%
GTTTATCATCTATGCAAGGT+TGG - chr1.4:7877785-7877804 MS.gene058498:intron 35.0%
TAAACTCATCTTCGTCATGA+AGG + chr1.4:7880086-7880105 None:intergenic 35.0%
TAAGGACCAAAGTGATGATT+GGG - chr1.4:7878831-7878850 MS.gene058498:intron 35.0%
TCAATTGAAGTTCTTGTGTG+TGG - chr1.4:7877837-7877856 MS.gene058498:intron 35.0%
TCCCAGAAGCAATGATAATA+AGG - chr1.4:7878813-7878832 MS.gene058498:intron 35.0%
TCGTTCGAAAATGTACAGTT+TGG + chr1.4:7880712-7880731 None:intergenic 35.0%
TCTTATGTAGGCTATGTGTT+AGG - chr1.4:7879302-7879321 MS.gene058498:intron 35.0%
TGCTACTCATATTCTCATCT+GGG - chr1.4:7877216-7877235 MS.gene058498:CDS 35.0%
TGTGCGTTACTTGAATAACA+AGG - chr1.4:7880502-7880521 MS.gene058498:intron 35.0%
TTCATGCAGGACGAATTAAT+GGG - chr1.4:7879457-7879476 MS.gene058498:intron 35.0%
TTGCTACTCATATTCTCATC+TGG - chr1.4:7877215-7877234 MS.gene058498:CDS 35.0%
! AATGTTTATGTCTGGATTGG+CGG + chr1.4:7879855-7879874 None:intergenic 35.0%
! ACTATGGATTTTTGTTCTGC+AGG - chr1.4:7879359-7879378 MS.gene058498:CDS 35.0%
! GATCATTCCTACCTTTTCAA+AGG + chr1.4:7878857-7878876 None:intergenic 35.0%
! TGATTCTTTTCAGTTCGGTT+TGG + chr1.4:7880558-7880577 None:intergenic 35.0%
!! CAGTTCTTTTCTTTTTGGTG+TGG - chr1.4:7880983-7881002 MS.gene058498:intron 35.0%
!! CGATACACTTTTTATCTCAC+AGG - chr1.4:7881141-7881160 MS.gene058498:intron 35.0%
!! CTTTTCTTTTTGGTGTGGTT+CGG - chr1.4:7880988-7881007 MS.gene058498:intron 35.0%
!! GATTCATCCACTTCGTTTTT+CGG - chr1.4:7878304-7878323 MS.gene058498:CDS 35.0%
!! TCGTTTTTCGGTGTATATGA+TGG - chr1.4:7878316-7878335 MS.gene058498:CDS 35.0%
!! TTTTAAGTACTTGTCTGCAG+TGG - chr1.4:7878020-7878039 MS.gene058498:intron 35.0%
!!! ACACAAATTTTCAGGTAAGG+CGG - chr1.4:7878421-7878440 MS.gene058498:intron 35.0%
!!! CTCTTACGAAAGCATTTTTC+AGG - chr1.4:7878522-7878541 MS.gene058498:intron 35.0%
AATAAAGGAAGCTCACTTGC+CGG + chr1.4:7879530-7879549 None:intergenic 40.0%
ATGTAGGCTATGTGTTAGGT+AGG - chr1.4:7879306-7879325 MS.gene058498:intron 40.0%
ATTCACGCTGCGTAATATCT+AGG - chr1.4:7879070-7879089 MS.gene058498:intron 40.0%
CAGCATTCGCAACAAAAAGT+AGG + chr1.4:7879047-7879066 None:intergenic 40.0%
CATAACACAGAACCGATGAT+TGG + chr1.4:7880654-7880673 None:intergenic 40.0%
CATAGTACATACCTACCTAC+CGG - chr1.4:7879508-7879527 MS.gene058498:intron 40.0%
CGTAATATCTAGGAATGGTC+AGG - chr1.4:7879080-7879099 MS.gene058498:intron 40.0%
GAAGATGATTGTTCTTGAGC+CGG + chr1.4:7881301-7881320 None:intergenic 40.0%
GAATACATAGCTGGAGATGT+TGG - chr1.4:7878494-7878513 MS.gene058498:intron 40.0%
GGGTTCAATGGAATGATTGA+AGG - chr1.4:7878778-7878797 MS.gene058498:intron 40.0%
TCTGCGCATTAACTGATGTT+AGG - chr1.4:7880845-7880864 MS.gene058498:intron 40.0%
TGCATCATCTGAACCAACAT+TGG - chr1.4:7881333-7881352 MS.gene058498:intron 40.0%
TGGAACCTTTATACCAGTTC+TGG + chr1.4:7880634-7880653 None:intergenic 40.0%
TGTACGTCAAGAACTTCTCT+TGG - chr1.4:7880245-7880264 MS.gene058498:intron 40.0%
TTAATATTCTGCAGGTGACG+TGG - chr1.4:7879784-7879803 MS.gene058498:intron 40.0%
TTGAAGTTCTTGTGTGTGGA+TGG - chr1.4:7877841-7877860 MS.gene058498:intron 40.0%
TTGCCTATCAAGCCAACAAT+TGG - chr1.4:7880215-7880234 MS.gene058498:intron 40.0%
! CCTTTATACCAGTTCTGGTT+CGG + chr1.4:7880629-7880648 None:intergenic 40.0%
! TAGGGTAATCTGACTTGCAA+TGG + chr1.4:7879889-7879908 None:intergenic 40.0%
! TGAAGAAATGAATGATGGGG+AGG + chr1.4:7877072-7877091 None:intergenic 40.0%
! TGATAGCTTGTGATGGCATA+TGG - chr1.4:7880109-7880128 MS.gene058498:CDS 40.0%
! TGATGATTGGGCCTTTGAAA+AGG - chr1.4:7878843-7878862 MS.gene058498:intron 40.0%
! TTCGGTGTATATGATGGTCA+TGG - chr1.4:7878322-7878341 MS.gene058498:intron 40.0%
!! CTACCAATTGTTGGCTTGAT+AGG + chr1.4:7880221-7880240 None:intergenic 40.0%
!! TTTGTGAAAGAGTGCTAGAC+CGG - chr1.4:7881182-7881201 MS.gene058498:intron 40.0%
!!! CTACTTTTTGTTGCGAATGC+TGG - chr1.4:7879045-7879064 MS.gene058498:intron 40.0%
!!! TGCTTTATTTTGGAGGCAAG+AGG - chr1.4:7879651-7879670 MS.gene058498:CDS 40.0%
!!! TTTATTTTGGAGGCAAGAGG+AGG - chr1.4:7879654-7879673 MS.gene058498:CDS 40.0%
AGAATGGATGAGATGATGCG+TGG - chr1.4:7878709-7878728 MS.gene058498:intron 45.0%
ATGAGATGATGCGTGGTCAA+AGG - chr1.4:7878716-7878735 MS.gene058498:intron 45.0%
CAAAGGCCCAATCATCACTT+TGG + chr1.4:7878840-7878859 None:intergenic 45.0%
CCGAACCAGAACTGGTATAA+AGG - chr1.4:7880626-7880645 MS.gene058498:CDS 45.0%
CGCTGCGTAATATCTAGGAA+TGG - chr1.4:7879075-7879094 MS.gene058498:intron 45.0%
GCTTGTGATGGCATATGGTA+TGG - chr1.4:7880114-7880133 MS.gene058498:intron 45.0%
GGTCCATCAAAGTCTGAATG+AGG + chr1.4:7878982-7879001 None:intergenic 45.0%
GGTGTATATGATGGTCATGG+AGG - chr1.4:7878325-7878344 MS.gene058498:intron 45.0%
GTTCATGAACTGAACTGAGC+TGG + chr1.4:7880957-7880976 None:intergenic 45.0%
TAAGTACTTGTCTGCAGTGG+CGG - chr1.4:7878023-7878042 MS.gene058498:intron 45.0%
TCCTGAGCTTGTGATTGAGA+AGG - chr1.4:7879407-7879426 MS.gene058498:CDS 45.0%
TCCTTCTCAATCACAAGCTC+AGG + chr1.4:7879411-7879430 None:intergenic 45.0%
TGAGATGATGCGTGGTCAAA+GGG - chr1.4:7878717-7878736 MS.gene058498:intron 45.0%
TGCATGTCTCGTGATTTGAG+AGG - chr1.4:7879226-7879245 MS.gene058498:intron 45.0%
TGCTGGCCATCACAAGTTAA+AGG - chr1.4:7880815-7880834 MS.gene058498:intron 45.0%
TGGAGGGAATTAGCAGTCTT+AGG - chr1.4:7878742-7878761 MS.gene058498:intron 45.0%
TTCAAGTAACGCACATCAGC+AGG + chr1.4:7880497-7880516 None:intergenic 45.0%
! GACTTTGATGGACCAACTTC+AGG - chr1.4:7878988-7879007 MS.gene058498:CDS 45.0%
! GAGGGGAATGTCACTTACTA+AGG + chr1.4:7879562-7879581 None:intergenic 45.0%
! GATTGGGCCTTTGAAAAGGT+AGG - chr1.4:7878847-7878866 MS.gene058498:intron 45.0%
!! CGAGTGCCTTTAACTTGTGA+TGG + chr1.4:7880824-7880843 None:intergenic 45.0%
!! GTGTGGTTTGATTCGGTCTT+TGG + chr1.4:7880879-7880898 None:intergenic 45.0%
!!! GCTGGTGGTTTTATTCATGC+AGG - chr1.4:7879444-7879463 MS.gene058498:intron 45.0%
ATCATAGCTCAAGGCGCAGA+GGG + chr1.4:7879580-7879599 None:intergenic 50.0%
CAAGCAGTGCTTCCTGAAGT+TGG + chr1.4:7879003-7879022 None:intergenic 50.0%
CCATCACCAACAGCCAAAGA+TGG + chr1.4:7881217-7881236 None:intergenic 50.0%
CTTCACTCTTGAGCACCTGT+TGG + chr1.4:7878475-7878494 None:intergenic 50.0%
GAGATGATGCGTGGTCAAAG+GGG - chr1.4:7878718-7878737 MS.gene058498:intron 50.0%
GATGATTGTTCTTGAGCCGG+CGG + chr1.4:7881298-7881317 None:intergenic 50.0%
GGGCCTCATTCAGACTTTGA+TGG - chr1.4:7878976-7878995 MS.gene058498:CDS 50.0%
TATCATAGCTCAAGGCGCAG+AGG + chr1.4:7879581-7879600 None:intergenic 50.0%
! CCATCTTTGGCTGTTGGTGA+TGG - chr1.4:7881214-7881233 MS.gene058498:intron 50.0%
! TCTTGAGCACCTGTTGGTGA+AGG + chr1.4:7878469-7878488 None:intergenic 50.0%
! TGGTTTGTCCGAACCAGAAC+TGG - chr1.4:7880618-7880637 MS.gene058498:CDS 50.0%
!! AAGAGTGCTAGACCGGTGTT+TGG - chr1.4:7881189-7881208 MS.gene058498:intron 50.0%
!! GGAGGTTGAAGAAGAGTACC+AGG + chr1.4:7877054-7877073 None:intergenic 50.0%
AAGCTCACTTGCCGGTAGGT+AGG + chr1.4:7879522-7879541 None:intergenic 55.0%
AAGGAAGCTCACTTGCCGGT+AGG + chr1.4:7879526-7879545 None:intergenic 55.0%
CCAAAGATGGCGCCAAACAC+CGG + chr1.4:7881204-7881223 None:intergenic 55.0%
GCAAGGTTGGCGTGCAACAA+TGG - chr1.4:7877798-7877817 MS.gene058498:intron 55.0%
TCATAGCTCAAGGCGCAGAG+GGG + chr1.4:7879579-7879598 None:intergenic 55.0%
TGATGCGTGGTCAAAGGGGA+TGG - chr1.4:7878722-7878741 MS.gene058498:intron 55.0%
TGCCAAGCACCTTCACCAAC+AGG - chr1.4:7878457-7878476 MS.gene058498:intron 55.0%
TTGGCGCCATCTTTGGCTGT+TGG - chr1.4:7881208-7881227 MS.gene058498:intron 55.0%
!! CACCTGTTGGTGAAGGTGCT+TGG + chr1.4:7878462-7878481 None:intergenic 55.0%
ACTGCAGACAAGTGCACCGC+CGG - chr1.4:7881279-7881298 MS.gene058498:intron 60.0%
CCGGTGTTTGGCGCCATCTT+TGG - chr1.4:7881201-7881220 MS.gene058498:intron 60.0%
GCATGCGGCGCATCTTGATG+TGG - chr1.4:7878282-7878301 MS.gene058498:intron 60.0%
GCGTGGTCAAAGGGGATGGA+GGG - chr1.4:7878726-7878745 MS.gene058498:intron 60.0%
TGCGTGGTCAAAGGGGATGG+AGG - chr1.4:7878725-7878744 MS.gene058498:intron 60.0%
GGCGGTGCACTTGTCTGCAG+TGG + chr1.4:7881280-7881299 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 7877047 7881366 7877047 ID=MS.gene058498
chr1.4 mRNA 7877047 7881366 7877047 ID=MS.gene058498.t1;Parent=MS.gene058498
chr1.4 exon 7881359 7881366 7881359 ID=MS.gene058498.t1.exon1;Parent=MS.gene058498.t1
chr1.4 CDS 7881359 7881366 7881359 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
chr1.4 exon 7880585 7880684 7880585 ID=MS.gene058498.t1.exon2;Parent=MS.gene058498.t1
chr1.4 CDS 7880585 7880684 7880585 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
chr1.4 exon 7880067 7880130 7880067 ID=MS.gene058498.t1.exon3;Parent=MS.gene058498.t1
chr1.4 CDS 7880067 7880130 7880067 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
chr1.4 exon 7879870 7879978 7879870 ID=MS.gene058498.t1.exon4;Parent=MS.gene058498.t1
chr1.4 CDS 7879870 7879978 7879870 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
chr1.4 exon 7879549 7879702 7879549 ID=MS.gene058498.t1.exon5;Parent=MS.gene058498.t1
chr1.4 CDS 7879549 7879702 7879549 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
chr1.4 exon 7879312 7879437 7879312 ID=MS.gene058498.t1.exon6;Parent=MS.gene058498.t1
chr1.4 CDS 7879312 7879437 7879312 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
chr1.4 exon 7878909 7879032 7878909 ID=MS.gene058498.t1.exon7;Parent=MS.gene058498.t1
chr1.4 CDS 7878909 7879032 7878909 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
chr1.4 exon 7878539 7878615 7878539 ID=MS.gene058498.t1.exon8;Parent=MS.gene058498.t1
chr1.4 CDS 7878539 7878615 7878539 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
chr1.4 exon 7878283 7878335 7878283 ID=MS.gene058498.t1.exon9;Parent=MS.gene058498.t1
chr1.4 CDS 7878283 7878335 7878283 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
chr1.4 exon 7878147 7878201 7878147 ID=MS.gene058498.t1.exon10;Parent=MS.gene058498.t1
chr1.4 CDS 7878147 7878201 7878147 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
chr1.4 exon 7877047 7877250 7877047 ID=MS.gene058498.t1.exon11;Parent=MS.gene058498.t1
chr1.4 CDS 7877047 7877250 7877047 ID=cds.MS.gene058498.t1;Parent=MS.gene058498.t1
Gene Sequence

>MS.gene058498

ATGTCCTGGTACTCTTCTTCAACCTCCCCATCATTCATTTCTTCATTCGTCTTTTTCTCAATTATAAAAAAGCTAACTTTAATTCTTCTTCAATTGTTTGTTCTCAAAGTTTTTTCCATTTTCATGTGAGAATGCATAAAAATTGAATTTTCAACTCTTATTTTTAATTTGCTACTCATATTCTCATCTGGGTCTTCCTTGTTCTTCATGATTATGAATTTTACATGTTGTTTAATTTCCATTGTTGGTTCTATCTTTATCTTGATATATGTTTCTTTGTTTAATGAAGATGAAAAAAAGTTTAAGAAATAAAAAATTCATTTTTTATTTTTTTAATATTTAATATTTTTCTATCTTTGTTTGTTGTCTCTTTATATTTTAATGTTTCATATTTAAATATTTGATTCCATGTTTTTGTTGTATATGGTTGGTTTTAGATCATTCTTTGATTATTATATCACTTTTCTTGAACCATGTTGTTGAGAAAGAAACAAAAAGGAAACATAGTAAACTTTAGATGATTCCTCTTTTTGTTAATTGATTTGGCACGTAGATTTGCAAAAGTTGTATTGGATTTTTTATTACATAGTTTGGTATTTATTTTCTTTACTTTTCATGAATAAAGAGATAAAAGTAATGGTTATTTGTTTTATTCAGATATAGCAATGGGAACAACTCTCAGCATTCCTAAAACTGAAAAGTTTTCAGAAGATGGTGAAAATGACAATCTTAGATATGGTTTATCATCTATGCAAGGTTGGCGTGCAACAATGGAAGATGCAGTAAGTAATCAATTGAAGTTCTTGTGTGTGGATGGATTTTTCTTAGCTTGTTTTTTTTATAGATGCATCATGTATTTCATACTTGCAATTTAAGTTTATTTAGAATTGTAGAAGCAAGTATATGTGGTCGAATTCTATGAGAAATGTGCATAAGATTCCTTGAATTTTTTCAAAAACTCTGCTTCAAATTATTTTAAGTACTTGTCTGCAGTGGCGGCGAGTTTGCTGAAATCGTAGTACCATCATGATTCTGTTGAAGCTTCAAAGTGTAGTTTTTGTCAAAATCATGATGGCGCAGTGTGATTGAATTGTGTTTTGGGGAATAAATGTGTATACCGTCAATTATGCTTTTAACTTTGTTTATTGGAGCTCATTTGATGTTATTTGTGTTGCTTAGATTGAACGTTAATATAATATGTAGTTAATTACTTTTCATTCTTTTTTCTTTTGCTAGCATGCGGCGCATCTTGATGTGGATTCATCCACTTCGTTTTTCGGTGTATATGATGGTCATGGAGGTAAAATTTGATTATTTGGAAGGATGGCGTTTATGACAGAAATTATGTGTATCTTTTTAATCAAAAATATGTTAACACAAATTTTCAGGTAAGGCGGTTGCAAAGTTTTGTGCCAAGCACCTTCACCAACAGGTGCTCAAGAGTGAAGAATACATAGCTGGAGATGTTGGAACATCTCTTACGAAAGCATTTTTCAGGTAAGCTAAAAAAAGAAAGAAAGCCTATTGTGAAGTTTTGATTTTATCATTTGTCTTCTGTTCAAATTGATACAATATAAGAAAAATTTATCACAAGTTCAGGTTATTTTCCACTATGAAAGTAACAAAAAAGTGAGTTATGAACTATTATTTTGGTTATTATGCAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAATTAGCAGTCTTAGGTGATAAGGTAAAAGGGTTCAATGGAATGATTGAAGGATTGATTCGGTCTCCCAGAAGCAATGATAATAAGGACCAAAGTGATGATTGGGCCTTTGAAAAGGTAGGAATGATCTCTGAAGAATACTTCGATGTTTACTTTCTAGCATCGTTTGATATACTTAGTTTCTTTTTGTTGCCATTCTGTAATTTGATCTTTTTATATTGTAAACAGGGGCCTCATTCAGACTTTGATGGACCAACTTCAGGAAGCACTGCTTGTGTTGCAATCATTAGAAACAACCTACTTTTTGTTGCGAATGCTGGTGATTCACGCTGCGTAATATCTAGGAATGGTCAGGTAACTTTAGAACAGAAATTTTTGAAATTTTAAGTTTAGCATTAATTTGTATAATTGGATGAACGTGTGTGTACACTACCTGTTATGTTATTTTTTTTTAAATTTCTATAAACATCGTGTACAATGCATGTCTCGTGATTTGAGAGGCTAAATACATCAAGAATATTCTTTTAAAAGCCTAGAATTTGTTTAATTCTTTTTCTTATGTAGGCTATGTGTTAGGTAGGAACTTGAAGATATTGACATAATTTTTTCTGACTATGGATTTTTGTTCTGCAGGCATACAATTTATCTAGAGATCACAATCCTGAGCTTGTGATTGAGAAGGAAAGAATCTATAAAGCTGGTGGTTTTATTCATGCAGGACGAATTAATGGGAGTTTAAATCTTGCAAGAGCTATAGGTACATAGTACATACCTACCTACCGGCAAGTGAGCTTCCTTTATTCAGTTTTAACCTTAGTAAGTGACATTCCCCTCTGCGCCTTGAGCTATGATAATCTTAGTGTACCGAAAATAAAAGGAAACTTCCTATTATTTTATTTTGTATGCTTTATTTTGGAGGCAAGAGGAGGTGTACTTGTATGCATGTTGTTTGGTTTCAAACTGTTTCTTCTTGACTATAGTTTCTTTTTGAAGAAGATGCACTTATATGGTTTCTATTGTTTCCATTTAATATGTTTTAATATTCTGCAGGTGACGTGGACTTCAAAAATAATAGATTTCTTTCTGCTGAAAAACAAGTTGTGACCGCCAATCCAGACATAAACATTGTAAGTTTGCTCCATTGCAAGTCAGATTACCCTATTTCTCAATAGACAATATGGTAGAATCAATAATGAAATGCTTAGTCAAGAGTTTCGGTATCTGCTACTACTACACGTGTTTCAGCTTTTCGTAATTTTTTTTTTATTTTTTAAGATGAACTTTTAGTAATGTTCTGAATGAGAGTTTTGTTTTTGGAATTATATCATAGGTTGACCTTCATGACGAAGATGAGTTTATAGTGATAGCTTGTGATGGCATATGGTATGGTTCTTATGCTTGATATCCACAATTCCCCATTTTAATAAATGTCATTTCTTGAAAATTCTTTTTCTTACGTTTCAGGGATTGCCTATCAAGCCAACAATTGGTAGATTTTGTACGTCAAGAACTTCTCTTGGTGAGTATTCAAGTTATACATTTTTTTTTTCAATCAGATTGTTTGAGTATTCAATACTCAATTATTCATGATATTTAATACAGCACTTACCTAGTACTGTCTTGTATATGAAATGTTATTTGAACTTATATAATTTGGTTGTAGAGAATTCGCAAAGCATGCACAGACTTATGATATATCATGCTTTTAGTAATTTGTTTCTAGTATATTGTACTTGTATTTTCTATCCTGCTGATGTGCGTTACTTGAATAACAAGGACTGTTTATGGTTTGGTTCAGAAAGAAAAACCAAACCGAACTGAAAAGAATCATTACTTACAACAGTTTAGTAAAATTGAACAAAACTGTTAATGGTTTGTCCGAACCAGAACTGGTATAAAGGTTCCAATCATCGGTTCTGTGTTATGAATTGAACCAGAACTACAAATACTATTATAGAAAACCAAACTGTACATTTTCGAACGAAACAGTTTCTTTTTGAACCGAACTGTTTATTTGTTAACCTTTGCTTTGTGTACCAAATTGTCATTATTAAATTTGGCTCAAATTGCTGGCCATCACAAGTTAAAGGCACTCGTTCTGCGCATTAACTGATGTTAGGACTAAAAGCCAAAGACCGAATCAAACCACACTTAAAAAAATCAAATTGTGAAGGACAGTTCACGAACTGAACTGTGTAATAAAACACCAGCTCAGTTCAGTTCATGAACTGTTCACAGTTCTTTTCTTTTTGGTGTGGTTCGGTTTAACAGTTCAATTTGGTTTCTATGAGTAGTCTTATGCTTAATGATCCAAGTTTTTTTTCCCTAAGCATAATGATCCAAGTTATTATTTCAATGTAATTTGGCTGATCTGTGTAACATACATTTTGACACGATACACTTTTTATCTCACAGGAAACTAAACTTTCTGAGGTTTGTGAAAGAGTGCTAGACCGGTGTTTGGCGCCATCTTTGGCTGTTGGTGATGGATGCGATAACATGACAATGATATTGGTGCAGTTTAAAAAACCACTGCAGACAAGTGCACCGCCGGCTCAAGAACAATCATCTTCAAATGAACAAGATGCATCATCTGAACCAACATTGGAGAACAGTTGA

Protein sequence

>MS.gene058498.t1

MSCIPKTEKFSEDGENDNLRYGLSSMQGWRATMEDAHAAHLDVDSSTSFFGVYDGHGGKAVAKFCAKHLHQQVLKSEEYIAGDVGTSLTKAFFRMDEMMRGQRGWRELAVLGDKVKGFNGMIEGLIRSPRSNDNKDQSDDWAFEKGPHSDFDGPTSGSTACVAIIRNNLLFVANAGDSRCVISRNGQAYNLSRDHNPELVIEKERIYKAGGFIHAGRINGSLNLARAIGDVDFKNNRFLSAEKQVVTANPDINIVDLHDEDEFIVIACDGIWDCLSSQQLVDFVRQELLLETKLSEVCERVLDRCLAPSLAVGDGCDNMTMILVQFKKPLQTSAPPAQEQSSSNEQDASSEPTLENS