AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07702

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07702.t1 MTR_4g055310 98.082 417 8 0 1 417 1 417 0.0 852
MS.gene07702.t1 MTR_2g084875 81.455 426 62 6 1 411 1 424 0.0 684
MS.gene07702.t1 MTR_4g132250 59.780 363 142 2 44 406 32 390 4.20e-150 431
MS.gene07702.t1 MTR_2g088130 64.052 306 108 1 103 408 71 374 7.23e-146 419
MS.gene07702.t1 MTR_4g061070 65.359 306 101 2 103 408 73 373 1.48e-140 406
MS.gene07702.t1 MTR_2g088130 66.304 276 91 1 133 408 51 324 9.94e-133 384
MS.gene07702.t1 MTR_2g088130 63.359 262 94 1 103 364 71 330 8.34e-121 354
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07702.t1 AT1G08250 82.058 379 49 5 46 407 26 402 0.0 604
MS.gene07702.t1 AT2G27820 84.298 363 48 3 55 408 46 408 0.0 598
MS.gene07702.t1 AT3G44720 74.495 396 90 6 29 415 28 421 0.0 571
MS.gene07702.t1 AT5G22630 76.982 391 74 5 31 411 34 418 0.0 566
MS.gene07702.t1 AT1G11790 63.107 309 112 1 100 408 85 391 1.95e-145 419
MS.gene07702.t1 AT3G07630 64.024 328 111 2 81 408 59 379 1.51e-140 406
MS.gene07702.t1 AT3G07630 64.024 328 111 2 81 408 59 379 1.51e-140 406
MS.gene07702.t1 AT3G07630 64.024 328 111 2 81 408 59 379 1.51e-140 406
MS.gene07702.t1 AT1G11790 61.382 246 93 1 100 345 85 328 7.13e-108 322

Find 124 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAACCGTGTCACATTATT+TGG 0.112547 4.1:+42995310 None:intergenic
TACATCTTTCTTAAGAGTTT+TGG 0.174536 4.1:-42994993 MS.gene07702:CDS
GCACGCGCTGCTGAGCTTTA+CGG 0.233623 4.1:-42995367 MS.gene07702:CDS
CACTGCCTCCTCGCGCTTCC+AGG 0.236669 4.1:-42995565 MS.gene07702:CDS
ACGATCGGTTCTTGGAATAA+TGG 0.293446 4.1:+42995270 None:intergenic
TCCGCATTTAACGCTTATTC+TGG 0.298276 4.1:+42996083 None:intergenic
AGGCTTCCATGGCTGAGGTT+AGG 0.315985 4.1:-42995048 MS.gene07702:CDS
CGATCGGTTCTTGGAATAAT+GGG 0.341581 4.1:+42995271 None:intergenic
GGCTTCCATGGCTGAGGTTA+GGG 0.363263 4.1:-42995047 MS.gene07702:CDS
AGCTTTACCGGCAGCGGCTT+CGG 0.370119 4.1:+42995774 None:intergenic
GGTGGTGACATGGTCGTTTC+CGG 0.373076 4.1:+42995957 None:intergenic
TTGAAAGGACGATCGGTTCT+TGG 0.387085 4.1:+42995262 None:intergenic
GATCGGTTACGGCGGCGTTA+TGG 0.389638 4.1:+42995926 None:intergenic
CACGGCATGGCTTCGCTGTT+CGG 0.402841 4.1:+42995748 None:intergenic
ATTCCCTTACCTATCTGAAC+CGG 0.403460 4.1:-42996143 MS.gene07702:CDS
GTGATTTATTGTTTCCGATT+GGG 0.409384 4.1:+42995893 None:intergenic
TGTGGAGGCGGTGGCGGAGG+AGG 0.411541 4.1:+42995617 None:intergenic
CTTCTTCTACTTTCTCATAG+TGG 0.412055 4.1:-42994937 None:intergenic
GCGAGGAGGCAGTGGTGGAC+GGG 0.414286 4.1:+42995574 None:intergenic
CATTTAACGCTTATTCTGGT+TGG 0.416317 4.1:+42996087 None:intergenic
GCTGTTCGGATAAGCTTTAC+CGG 0.419640 4.1:+42995762 None:intergenic
GTCGCATACCAAGGAGTTCC+CGG 0.419874 4.1:-42995805 MS.gene07702:CDS
CGATGTGGAGGCGGTGGCGG+AGG 0.420946 4.1:+42995614 None:intergenic
CCAATCGGCTCGGTTTGAAC+CGG 0.421888 4.1:+42996041 None:intergenic
GGAGGAGGAGGTCGTAGTTT+CGG 0.424069 4.1:+42995632 None:intergenic
GGAGGCGGTGGCGGAGGAGG+AGG 0.431745 4.1:+42995620 None:intergenic
GTTCAGATAGGTAAGGGAAT+TGG 0.447287 4.1:+42996146 None:intergenic
GGGTTCGCCCCTCGTTAAAC+CGG 0.447861 4.1:-42996122 MS.gene07702:CDS
AGCGCATGAGCTTTGCCAAT+CGG 0.449914 4.1:+42996026 None:intergenic
CGTGCATCGGTGCCGGAGAT+AGG 0.451609 4.1:+42995842 None:intergenic
CGACGATGTGGAGGCGGTGG+CGG 0.453260 4.1:+42995611 None:intergenic
AAGCTCAGCAGCGCGTGCGC+TGG 0.453749 4.1:+42995372 None:intergenic
GGCGGCGTTATGGCCGTTGA+CGG 0.463263 4.1:+42995936 None:intergenic
CGCGAGGAGGCAGTGGTGGA+CGG 0.473902 4.1:+42995573 None:intergenic
AGTGATTTATTGTTTCCGAT+TGG 0.474485 4.1:+42995892 None:intergenic
ATGAGCTTTGCCAATCGGCT+CGG 0.474923 4.1:+42996031 None:intergenic
AGCTGATCGCGCAGTTCTAC+CGG 0.480649 4.1:-42995683 MS.gene07702:CDS
GCTTAACTAAGATTGAATCT+AGG 0.481937 4.1:-42995159 MS.gene07702:CDS
GATCTTCAGCTCGTCCCAAT+CGG 0.482742 4.1:-42995907 MS.gene07702:CDS
TCATCATCCACAACTCGAAT+CGG 0.483438 4.1:+42995121 None:intergenic
CTGGAAGCGCGAGGAGGCAG+TGG 0.487019 4.1:+42995566 None:intergenic
TCGGTGATAGTAAGTGGCTT+TGG 0.489232 4.1:+42995865 None:intergenic
TGGTTGGAGCTGAACCGATC+CGG 0.493435 4.1:+42996103 None:intergenic
GTGGAGCCGTGCATCGGTGC+CGG 0.495353 4.1:+42995835 None:intergenic
CGGATAAGCTTTACCGGCAG+CGG 0.495619 4.1:+42995768 None:intergenic
TGTGACACGGTTTGTTATGT+TGG 0.498214 4.1:-42995302 MS.gene07702:CDS
GGGGCGAACCCGGTTCAGAT+AGG 0.502714 4.1:+42996134 None:intergenic
CGAGGAGGCAGTGGTGGACG+GGG 0.508663 4.1:+42995575 None:intergenic
ACATGGTCGTTTCCGGTGAC+CGG 0.513789 4.1:+42995964 None:intergenic
TACTATCACCGACCTATCTC+CGG 0.522266 4.1:-42995854 MS.gene07702:CDS
CGCCCCTCGTTAAACCGGAT+CGG 0.523600 4.1:-42996117 MS.gene07702:CDS
ATCGGCTCGGTTTGAACCGG+TGG 0.524999 4.1:+42996044 None:intergenic
AGCGGCTTCGGAGTATGCAC+CGG 0.526783 4.1:+42995786 None:intergenic
TGGCCGTCCGATTCGAGTTG+TGG 0.527016 4.1:-42995128 MS.gene07702:CDS
GGATTAAATATCCTAGCTGA+TGG 0.528682 4.1:-42995346 MS.gene07702:CDS
ATAAGCGTTAAATGCGGATA+CGG 0.530595 4.1:-42996078 MS.gene07702:CDS
CTCCGACGATGTGGAGGCGG+TGG 0.532325 4.1:+42995608 None:intergenic
CTTCTCCGACGATGTGGAGG+CGG 0.532954 4.1:+42995605 None:intergenic
GACCATGTCACCACCGTCAA+CGG 0.533606 4.1:-42995949 MS.gene07702:CDS
GATTGGGACGAGCTGAAGAT+CGG 0.534875 4.1:+42995909 None:intergenic
CGGCCTCAACGTAGCGCGTG+AGG 0.535998 4.1:-42995464 MS.gene07702:CDS
GCATACTCCGAAGCCGCTGC+CGG 0.537170 4.1:-42995781 MS.gene07702:CDS
TGGCGATAGCAGCAGTGTCG+CGG 0.539606 4.1:+42995392 None:intergenic
CACTATGAGAAAGTAGAAGA+AGG 0.544406 4.1:+42994938 None:intergenic
TCGCATTGAGCTAATGCTTG+TGG 0.545583 4.1:+42995505 None:intergenic
GACGAGCTGAAGATCGGTTA+CGG 0.546171 4.1:+42995915 None:intergenic
GAAGCGCGAGGAGGCAGTGG+TGG 0.551549 4.1:+42995569 None:intergenic
CCGGTTCAAACCGAGCCGAT+TGG 0.554522 4.1:-42996041 MS.gene07702:CDS
CGAGATGAATCTCCGGTCAC+CGG 0.555384 4.1:-42995976 MS.gene07702:CDS
AAAGTAGAAGAAGGACTCCA+AGG 0.559184 4.1:+42994947 None:intergenic
CGGAGGGTGGAGCCGTGCAT+CGG 0.562815 4.1:+42995829 None:intergenic
TTCCCTTACCTATCTGAACC+GGG 0.566128 4.1:-42996142 MS.gene07702:CDS
TTCACAGCGAGATGAATCTC+CGG 0.567455 4.1:-42995983 MS.gene07702:CDS
AGTATGCACCGGGAACTCCT+TGG 0.568238 4.1:+42995797 None:intergenic
GATAGGTCGGTGATAGTAAG+TGG 0.571076 4.1:+42995859 None:intergenic
TTGGTATGCGACACGGAGGG+TGG 0.572771 4.1:+42995816 None:intergenic
CGCCACCGCCTCCACATCGT+CGG 0.573031 4.1:-42995610 MS.gene07702:CDS
TTCGGACTCCTGGAAGCGCG+AGG 0.576639 4.1:+42995557 None:intergenic
GGTTTAACGAGGGGCGAACC+CGG 0.579775 4.1:+42996124 None:intergenic
GGCACAAAATGCACTTGCTG+AGG 0.582924 4.1:-42995026 MS.gene07702:CDS
GGCCGTTGACGGTGGTGACA+TGG 0.583052 4.1:+42995947 None:intergenic
TTGTGCCCTAACCTCAGCCA+TGG 0.583878 4.1:+42995042 None:intergenic
CTACCGGTTGAAAACTCCCT+CGG 0.584065 4.1:-42995667 MS.gene07702:CDS
GCGGCTTCGGAGTATGCACC+GGG 0.586817 4.1:+42995787 None:intergenic
GAACCCGGTTCAGATAGGTA+AGG 0.591113 4.1:+42996139 None:intergenic
CTATCTCCGGCACCGATGCA+CGG 0.591172 4.1:-42995841 MS.gene07702:CDS
GGCGTTATGGCCGTTGACGG+TGG 0.595595 4.1:+42995939 None:intergenic
CATGCCGTGTGATCAATTCG+AGG 0.597736 4.1:-42995734 MS.gene07702:CDS
AACCCGGTTCAGATAGGTAA+GGG 0.606680 4.1:+42996140 None:intergenic
GAACTTCTCCGACGATGTGG+AGG 0.607022 4.1:+42995602 None:intergenic
GGCACCAGCTGTATCGTCAA+CGG 0.609222 4.1:+42995441 None:intergenic
CGGCCTCACGCGCTACGTTG+AGG 0.609595 4.1:+42995461 None:intergenic
GTTGTGGATGATGAAAATGA+TGG 0.612547 4.1:-42995112 MS.gene07702:CDS
CTCGAATTGATCACACGGCA+TGG 0.616382 4.1:+42995735 None:intergenic
CTCCAAGGTGTCATATCCAT+AGG 0.621384 4.1:+42994962 None:intergenic
GTTGAACTTCTCCGACGATG+TGG 0.621502 4.1:+42995599 None:intergenic
GAGGCCGTTGACGATACAGC+TGG 0.621866 4.1:-42995445 MS.gene07702:CDS
CATCGGTGCCGGAGATAGGT+CGG 0.624382 4.1:+42995846 None:intergenic
GAACCGATCCGGTTTAACGA+GGG 0.630908 4.1:+42996114 None:intergenic
GGAGGAGGTCGTAGTTTCGG+TGG 0.633128 4.1:+42995635 None:intergenic
ATCCTATGGATATGACACCT+TGG 0.634008 4.1:-42994964 MS.gene07702:CDS
CATCTTGTATTCCATCAGCT+AGG 0.636630 4.1:+42995335 None:intergenic
ACCCTCCGTGTCGCATACCA+AGG 0.636772 4.1:-42995814 MS.gene07702:CDS
TGACGATACAGCTGGTGCCG+CGG 0.637405 4.1:-42995437 MS.gene07702:CDS
GAAAACACGCTAACAAAGCT+CGG 0.640593 4.1:-42995484 MS.gene07702:CDS
AACCGATCCGGTTTAACGAG+GGG 0.645716 4.1:+42996115 None:intergenic
GGACTCCTGGAAGCGCGAGG+AGG 0.648483 4.1:+42995560 None:intergenic
TGAACCGATCCGGTTTAACG+AGG 0.652677 4.1:+42996113 None:intergenic
GAACTCCTTGGTATGCGACA+CGG 0.654132 4.1:+42995809 None:intergenic
CGAATCGGACGGCCACGATG+AGG 0.656619 4.1:+42995136 None:intergenic
TAGGTAAGGGAATTGGAAGA+CGG 0.657172 4.1:+42996153 None:intergenic
TTCGGTGGATAGATCCTCCG+AGG 0.664481 4.1:+42995650 None:intergenic
CGATAGCAGCAGTGTCGCGG+AGG 0.671132 4.1:+42995395 None:intergenic
CATCCACAACTCGAATCGGA+CGG 0.675677 4.1:+42995125 None:intergenic
ACCAGAATAAGCGTTAAATG+CGG 0.694484 4.1:-42996084 MS.gene07702:CDS
CTCCTTGGTATGCGACACGG+AGG 0.695713 4.1:+42995812 None:intergenic
TCGGTGGATAGATCCTCCGA+GGG 0.696217 4.1:+42995651 None:intergenic
ATGATCCAAATAATGTGACA+CGG 0.697892 4.1:-42995315 MS.gene07702:CDS
TCCTTGGTATGCGACACGGA+GGG 0.699394 4.1:+42995813 None:intergenic
CCGGTTGAAAACTCCCTCGG+AGG 0.702573 4.1:-42995664 MS.gene07702:CDS
GCTACCTCGAATTGATCACA+CGG 0.710462 4.1:+42995730 None:intergenic
GAGCTGAAGATCGGTTACGG+CGG 0.717318 4.1:+42995918 None:intergenic
ATTTGCAGCAATAAACTCCG+CGG 0.720755 4.1:+42995420 None:intergenic
ATTGAATCTAGGCCTCATCG+TGG 0.760383 4.1:-42995148 MS.gene07702:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTTTTATATTGATTTTG+AGG - chr4.1:42996043-42996062 MS.gene07702:CDS 15.0%
!!! AAAACAATACTTGTTTTGAA+AGG + chr4.1:42995867-42995886 None:intergenic 20.0%
!! ACATCTTTCTTAAGAGTTTT+GGG - chr4.1:42996119-42996138 MS.gene07702:CDS 25.0%
!! CACGTGTTAAATATTCTTTT+CGG + chr4.1:42995575-42995594 None:intergenic 25.0%
!! TACATCTTTCTTAAGAGTTT+TGG - chr4.1:42996118-42996137 MS.gene07702:CDS 25.0%
!!! ATTGTTTTTGCTCATGATAA+AGG - chr4.1:42995879-42995898 MS.gene07702:CDS 25.0%
AGTGATTTATTGTTTCCGAT+TGG + chr4.1:42995222-42995241 None:intergenic 30.0%
ATGATCCAAATAATGTGACA+CGG - chr4.1:42995796-42995815 MS.gene07702:CDS 30.0%
GCTTAACTAAGATTGAATCT+AGG - chr4.1:42995952-42995971 MS.gene07702:CDS 30.0%
GTGATTTATTGTTTCCGATT+GGG + chr4.1:42995221-42995240 None:intergenic 30.0%
! CATCTTTCTTAAGAGTTTTG+GGG - chr4.1:42996120-42996139 MS.gene07702:CDS 30.0%
ACAAACCGTGTCACATTATT+TGG + chr4.1:42995804-42995823 None:intergenic 35.0%
ACCAGAATAAGCGTTAAATG+CGG - chr4.1:42995027-42995046 MS.gene07702:CDS 35.0%
ATAAGCGTTAAATGCGGATA+CGG - chr4.1:42995033-42995052 MS.gene07702:CDS 35.0%
CATTTAACGCTTATTCTGGT+TGG + chr4.1:42995027-42995046 None:intergenic 35.0%
GGATTAAATATCCTAGCTGA+TGG - chr4.1:42995765-42995784 MS.gene07702:CDS 35.0%
GTTGTGGATGATGAAAATGA+TGG - chr4.1:42995999-42996018 MS.gene07702:CDS 35.0%
! AAATATTCTTTTCGGACTCC+TGG + chr4.1:42995567-42995586 None:intergenic 35.0%
! ATTCGAGGTAGCTTTTCAAT+CGG - chr4.1:42995392-42995411 MS.gene07702:CDS 35.0%
!! TGCTTTCAGCTTTTGCTTTT+AGG - chr4.1:42995922-42995941 MS.gene07702:CDS 35.0%
!!! ACTTGTTTTGAAAGGACGAT+CGG + chr4.1:42995859-42995878 None:intergenic 35.0%
!!! TATTGATTTTGAGGCTTCCA+TGG - chr4.1:42996052-42996071 MS.gene07702:CDS 35.0%
AAAGTAGAAGAAGGACTCCA+AGG + chr4.1:42996167-42996186 None:intergenic 40.0%
ATCCTATGGATATGACACCT+TGG - chr4.1:42996147-42996166 MS.gene07702:CDS 40.0%
ATTCCCTTACCTATCTGAAC+CGG - chr4.1:42994968-42994987 MS.gene07702:CDS 40.0%
ATTTGCAGCAATAAACTCCG+CGG + chr4.1:42995694-42995713 None:intergenic 40.0%
CATCTTGTATTCCATCAGCT+AGG + chr4.1:42995779-42995798 None:intergenic 40.0%
GAAAACACGCTAACAAAGCT+CGG - chr4.1:42995627-42995646 MS.gene07702:CDS 40.0%
GTTCAGATAGGTAAGGGAAT+TGG + chr4.1:42994968-42994987 None:intergenic 40.0%
TAGGTAAGGGAATTGGAAGA+CGG + chr4.1:42994961-42994980 None:intergenic 40.0%
TCATCATCCACAACTCGAAT+CGG + chr4.1:42995993-42996012 None:intergenic 40.0%
TCCGCATTTAACGCTTATTC+TGG + chr4.1:42995031-42995050 None:intergenic 40.0%
! ACGATCGGTTCTTGGAATAA+TGG + chr4.1:42995844-42995863 None:intergenic 40.0%
! CGATCGGTTCTTGGAATAAT+GGG + chr4.1:42995843-42995862 None:intergenic 40.0%
! CTTTTCAATCGGTAGAACTC+TGG - chr4.1:42995403-42995422 MS.gene07702:CDS 40.0%
!! TGTGACACGGTTTGTTATGT+TGG - chr4.1:42995809-42995828 MS.gene07702:CDS 40.0%
!!! AGTTTTGGGGAGTTATCCTA+TGG - chr4.1:42996133-42996152 MS.gene07702:CDS 40.0%
!!! TACGGTTTTGAATTCTCCAC+CGG - chr4.1:42995051-42995070 MS.gene07702:CDS 40.0%
AACCCGGTTCAGATAGGTAA+GGG + chr4.1:42994974-42994993 None:intergenic 45.0%
ATTGAATCTAGGCCTCATCG+TGG - chr4.1:42995963-42995982 MS.gene07702:CDS 45.0%
GATAGGTCGGTGATAGTAAG+TGG + chr4.1:42995255-42995274 None:intergenic 45.0%
GCTACCTCGAATTGATCACA+CGG + chr4.1:42995384-42995403 None:intergenic 45.0%
GCTGTTCGGATAAGCTTTAC+CGG + chr4.1:42995352-42995371 None:intergenic 45.0%
TACTATCACCGACCTATCTC+CGG - chr4.1:42995257-42995276 MS.gene07702:CDS 45.0%
TCGCATTGAGCTAATGCTTG+TGG + chr4.1:42995609-42995628 None:intergenic 45.0%
TCGGTGATAGTAAGTGGCTT+TGG + chr4.1:42995249-42995268 None:intergenic 45.0%
TTCACAGCGAGATGAATCTC+CGG - chr4.1:42995128-42995147 MS.gene07702:CDS 45.0%
TTCCCTTACCTATCTGAACC+GGG - chr4.1:42994969-42994988 MS.gene07702:CDS 45.0%
! CTCCAAGGTGTCATATCCAT+AGG + chr4.1:42996152-42996171 None:intergenic 45.0%
! TTGAAAGGACGATCGGTTCT+TGG + chr4.1:42995852-42995871 None:intergenic 45.0%
AACCGATCCGGTTTAACGAG+GGG + chr4.1:42994999-42995018 None:intergenic 50.0%
AGCGCATGAGCTTTGCCAAT+CGG + chr4.1:42995088-42995107 None:intergenic 50.0%
ATGAGCTTTGCCAATCGGCT+CGG + chr4.1:42995083-42995102 None:intergenic 50.0%
CATCCACAACTCGAATCGGA+CGG + chr4.1:42995989-42996008 None:intergenic 50.0%
CATGCCGTGTGATCAATTCG+AGG - chr4.1:42995377-42995396 MS.gene07702:CDS 50.0%
CTCGAATTGATCACACGGCA+TGG + chr4.1:42995379-42995398 None:intergenic 50.0%
GAACCCGGTTCAGATAGGTA+AGG + chr4.1:42994975-42994994 None:intergenic 50.0%
GAACCGATCCGGTTTAACGA+GGG + chr4.1:42995000-42995019 None:intergenic 50.0%
GAACTCCTTGGTATGCGACA+CGG + chr4.1:42995305-42995324 None:intergenic 50.0%
GACGAGCTGAAGATCGGTTA+CGG + chr4.1:42995199-42995218 None:intergenic 50.0%
GATCTTCAGCTCGTCCCAAT+CGG - chr4.1:42995204-42995223 MS.gene07702:CDS 50.0%
GATTGGGACGAGCTGAAGAT+CGG + chr4.1:42995205-42995224 None:intergenic 50.0%
GTTGAACTTCTCCGACGATG+TGG + chr4.1:42995515-42995534 None:intergenic 50.0%
TGAACCGATCCGGTTTAACG+AGG + chr4.1:42995001-42995020 None:intergenic 50.0%
! CTACCGGTTGAAAACTCCCT+CGG - chr4.1:42995444-42995463 MS.gene07702:CDS 50.0%
! GGCACAAAATGCACTTGCTG+AGG - chr4.1:42996085-42996104 MS.gene07702:CDS 50.0%
!!! TTTTGAGGCTTCCATGGCTG+AGG - chr4.1:42996058-42996077 MS.gene07702:CDS 50.0%
ACATGGTCGTTTCCGGTGAC+CGG + chr4.1:42995150-42995169 None:intergenic 55.0%
AGCTGATCGCGCAGTTCTAC+CGG - chr4.1:42995428-42995447 MS.gene07702:CDS 55.0%
AGGCTTCCATGGCTGAGGTT+AGG - chr4.1:42996063-42996082 MS.gene07702:CDS 55.0%
AGTATGCACCGGGAACTCCT+TGG + chr4.1:42995317-42995336 None:intergenic 55.0%
CGAGATGAATCTCCGGTCAC+CGG - chr4.1:42995135-42995154 MS.gene07702:CDS 55.0%
CGGATAAGCTTTACCGGCAG+CGG + chr4.1:42995346-42995365 None:intergenic 55.0%
GAACTTCTCCGACGATGTGG+AGG + chr4.1:42995512-42995531 None:intergenic 55.0%
GACCATGTCACCACCGTCAA+CGG - chr4.1:42995162-42995181 MS.gene07702:CDS 55.0%
GAGCTGAAGATCGGTTACGG+CGG + chr4.1:42995196-42995215 None:intergenic 55.0%
GGAGGAGGAGGTCGTAGTTT+CGG + chr4.1:42995482-42995501 None:intergenic 55.0%
GGCACCAGCTGTATCGTCAA+CGG + chr4.1:42995673-42995692 None:intergenic 55.0%
GGCTTCCATGGCTGAGGTTA+GGG - chr4.1:42996064-42996083 MS.gene07702:CDS 55.0%
GGTGGTGACATGGTCGTTTC+CGG + chr4.1:42995157-42995176 None:intergenic 55.0%
GTCGCATACCAAGGAGTTCC+CGG - chr4.1:42995306-42995325 MS.gene07702:CDS 55.0%
TCCTTGGTATGCGACACGGA+GGG + chr4.1:42995301-42995320 None:intergenic 55.0%
TCGGTGGATAGATCCTCCGA+GGG + chr4.1:42995463-42995482 None:intergenic 55.0%
TGGTTGGAGCTGAACCGATC+CGG + chr4.1:42995011-42995030 None:intergenic 55.0%
TTCGGTGGATAGATCCTCCG+AGG + chr4.1:42995464-42995483 None:intergenic 55.0%
TTGTGCCCTAACCTCAGCCA+TGG + chr4.1:42996072-42996091 None:intergenic 55.0%
! CCTCCGAGGGAGTTTTCAAC+CGG + chr4.1:42995450-42995469 None:intergenic 55.0%
!! CCAATCGGCTCGGTTTGAAC+CGG + chr4.1:42995073-42995092 None:intergenic 55.0%
ACCCTCCGTGTCGCATACCA+AGG - chr4.1:42995297-42995316 MS.gene07702:CDS 60.0%
AGCGGCTTCGGAGTATGCAC+CGG + chr4.1:42995328-42995347 None:intergenic 60.0%
AGCTTTACCGGCAGCGGCTT+CGG + chr4.1:42995340-42995359 None:intergenic 60.0%
CACGGCATGGCTTCGCTGTT+CGG + chr4.1:42995366-42995385 None:intergenic 60.0%
CCGGTTCAAACCGAGCCGAT+TGG - chr4.1:42995070-42995089 MS.gene07702:CDS 60.0%
CCGGTTGAAAACTCCCTCGG+AGG - chr4.1:42995447-42995466 MS.gene07702:CDS 60.0%
CGCCCCTCGTTAAACCGGAT+CGG - chr4.1:42994994-42995013 MS.gene07702:CDS 60.0%
CTCCTTGGTATGCGACACGG+AGG + chr4.1:42995302-42995321 None:intergenic 60.0%
CTTCTCCGACGATGTGGAGG+CGG + chr4.1:42995509-42995528 None:intergenic 60.0%
GAGGCCGTTGACGATACAGC+TGG - chr4.1:42995666-42995685 MS.gene07702:CDS 60.0%
GATCGGTTACGGCGGCGTTA+TGG + chr4.1:42995188-42995207 None:intergenic 60.0%
GCACGCGCTGCTGAGCTTTA+CGG - chr4.1:42995744-42995763 MS.gene07702:CDS 60.0%
GGAGGAGGTCGTAGTTTCGG+TGG + chr4.1:42995479-42995498 None:intergenic 60.0%
GGGTTCGCCCCTCGTTAAAC+CGG - chr4.1:42994989-42995008 MS.gene07702:CDS 60.0%
GGTTTAACGAGGGGCGAACC+CGG + chr4.1:42994990-42995009 None:intergenic 60.0%
TGGCGATAGCAGCAGTGTCG+CGG + chr4.1:42995722-42995741 None:intergenic 60.0%
TTGGTATGCGACACGGAGGG+TGG + chr4.1:42995298-42995317 None:intergenic 60.0%
! TGACGATACAGCTGGTGCCG+CGG - chr4.1:42995674-42995693 MS.gene07702:CDS 60.0%
!! ATCGGCTCGGTTTGAACCGG+TGG + chr4.1:42995070-42995089 None:intergenic 60.0%
!! CATCGGTGCCGGAGATAGGT+CGG + chr4.1:42995268-42995287 None:intergenic 60.0%
!! CTATCTCCGGCACCGATGCA+CGG - chr4.1:42995270-42995289 MS.gene07702:CDS 60.0%
!! TGGCCGTCCGATTCGAGTTG+TGG - chr4.1:42995983-42996002 MS.gene07702:CDS 60.0%
CGAATCGGACGGCCACGATG+AGG + chr4.1:42995978-42995997 None:intergenic 65.0%
CGATAGCAGCAGTGTCGCGG+AGG + chr4.1:42995719-42995738 None:intergenic 65.0%
GCATACTCCGAAGCCGCTGC+CGG - chr4.1:42995330-42995349 MS.gene07702:CDS 65.0%
GCGGCTTCGGAGTATGCACC+GGG + chr4.1:42995327-42995346 None:intergenic 65.0%
GGCCGTTGACGGTGGTGACA+TGG + chr4.1:42995167-42995186 None:intergenic 65.0%
GGCGGCGTTATGGCCGTTGA+CGG + chr4.1:42995178-42995197 None:intergenic 65.0%
GGCGTTATGGCCGTTGACGG+TGG + chr4.1:42995175-42995194 None:intergenic 65.0%
GGGGCGAACCCGGTTCAGAT+AGG + chr4.1:42994980-42994999 None:intergenic 65.0%
! TTCGGACTCCTGGAAGCGCG+AGG + chr4.1:42995557-42995576 None:intergenic 65.0%
!! CGTGCATCGGTGCCGGAGAT+AGG + chr4.1:42995272-42995291 None:intergenic 65.0%
AAGCTCAGCAGCGCGTGCGC+TGG + chr4.1:42995742-42995761 None:intergenic 70.0%
CACTGCCTCCTCGCGCTTCC+AGG - chr4.1:42995546-42995565 MS.gene07702:CDS 70.0%
CGACGATGTGGAGGCGGTGG+CGG + chr4.1:42995503-42995522 None:intergenic 70.0%
CGCCACCGCCTCCACATCGT+CGG - chr4.1:42995501-42995520 MS.gene07702:CDS 70.0%
CGGAGGGTGGAGCCGTGCAT+CGG + chr4.1:42995285-42995304 None:intergenic 70.0%
CGGCCTCAACGTAGCGCGTG+AGG - chr4.1:42995647-42995666 MS.gene07702:CDS 70.0%
CGGCCTCACGCGCTACGTTG+AGG + chr4.1:42995653-42995672 None:intergenic 70.0%
CTCCGACGATGTGGAGGCGG+TGG + chr4.1:42995506-42995525 None:intergenic 70.0%
GAAGCGCGAGGAGGCAGTGG+TGG + chr4.1:42995545-42995564 None:intergenic 70.0%
! CGCGAGGAGGCAGTGGTGGA+CGG + chr4.1:42995541-42995560 None:intergenic 70.0%
! CTGGAAGCGCGAGGAGGCAG+TGG + chr4.1:42995548-42995567 None:intergenic 70.0%
! GGACTCCTGGAAGCGCGAGG+AGG + chr4.1:42995554-42995573 None:intergenic 70.0%
! GTGGAGCCGTGCATCGGTGC+CGG + chr4.1:42995279-42995298 None:intergenic 70.0%
!! CGAGGAGGCAGTGGTGGACG+GGG + chr4.1:42995539-42995558 None:intergenic 70.0%
!! GCGAGGAGGCAGTGGTGGAC+GGG + chr4.1:42995540-42995559 None:intergenic 70.0%
! CGATGTGGAGGCGGTGGCGG+AGG + chr4.1:42995500-42995519 None:intergenic 75.0%
!! TGTGGAGGCGGTGGCGGAGG+AGG + chr4.1:42995497-42995516 None:intergenic 75.0%
!!! GGAGGCGGTGGCGGAGGAGG+AGG + chr4.1:42995494-42995513 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 42994940 42996193 42994940 ID=MS.gene07702
chr4.1 mRNA 42994940 42996193 42994940 ID=MS.gene07702.t1;Parent=MS.gene07702
chr4.1 exon 42994940 42996193 42994940 ID=MS.gene07702.t1.exon1;Parent=MS.gene07702.t1
chr4.1 CDS 42994940 42996193 42994940 ID=cds.MS.gene07702.t1;Parent=MS.gene07702.t1
Gene Sequence

>MS.gene07702

ATGAATGCTCTCACTACACCGTCTTCCAATTCCCTTACCTATCTGAACCGGGTTCGCCCCTCGTTAAACCGGATCGGTTCAGCTCCAACCAGAATAAGCGTTAAATGCGGATACGGTTTTGAATTCTCCACCGGTTCAAACCGAGCCGATTGGCAAAGCTCATGCGCTATTTTATCAAGCAAAGTAAATTCACAGCGAGATGAATCTCCGGTCACCGGAAACGACCATGTCACCACCGTCAACGGCCATAACGCCGCCGTAACCGATCTTCAGCTCGTCCCAATCGGAAACAATAAATCACTTCAACCAAAGCCACTTACTATCACCGACCTATCTCCGGCACCGATGCACGGCTCCACCCTCCGTGTCGCATACCAAGGAGTTCCCGGTGCATACTCCGAAGCCGCTGCCGGTAAAGCTTATCCGAACAGCGAAGCCATGCCGTGTGATCAATTCGAGGTAGCTTTTCAATCGGTAGAACTCTGGATAGCTGATCGCGCAGTTCTACCGGTTGAAAACTCCCTCGGAGGATCTATCCACCGAAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGAGAAGTTCAACTCCCCGTCCACCACTGCCTCCTCGCGCTTCCAGGAGTCCGAAAAGAATATTTAACACGTGTGATTTCGCATCCACAAGCATTAGCTCAATGCGAAAACACGCTAACAAAGCTCGGCCTCAACGTAGCGCGTGAGGCCGTTGACGATACAGCTGGTGCCGCGGAGTTTATTGCTGCAAATAACCTCCGCGACACTGCTGCTATCGCCAGCGCACGCGCTGCTGAGCTTTACGGATTAAATATCCTAGCTGATGGAATACAAGATGATCCAAATAATGTGACACGGTTTGTTATGTTGGCAAGAGAACCCATTATTCCAAGAACCGATCGTCCTTTCAAAACAAGTATTGTTTTTGCTCATGATAAAGGAACTTCAGTGCTTTTCAAAGTGCTTTCAGCTTTTGCTTTTAGGAATATCAGCTTAACTAAGATTGAATCTAGGCCTCATCGTGGCCGTCCGATTCGAGTTGTGGATGATGAAAATGATGGAACAGCTAAACATTTTGAGTATATGTTTTATATTGATTTTGAGGCTTCCATGGCTGAGGTTAGGGCACAAAATGCACTTGCTGAGGTTCAAGAATTTACATCTTTCTTAAGAGTTTTGGGGAGTTATCCTATGGATATGACACCTTGGAGTCCTTCTTCTACTTTCTCATAG
Protein sequence

>MS.gene07702.t1

MNALTTPSSNSLTYLNRVRPSLNRIGSAPTRISVKCGYGFEFSTGSNRADWQSSCAILSSKVNSQRDESPVTGNDHVTTVNGHNAAVTDLQLVPIGNNKSLQPKPLTITDLSPAPMHGSTLRVAYQGVPGAYSEAAAGKAYPNSEAMPCDQFEVAFQSVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALAQCENTLTKLGLNVAREAVDDTAGAAEFIAANNLRDTAAIASARAAELYGLNILADGIQDDPNNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRGRPIRVVDDENDGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSSTFS