Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07745.t1 | XP_024632321.1 | 95.8 | 383 | 14 | 1 | 2 | 382 | 3 | 385 | 3.30E-210 | 740.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07745.t1 | Q9SW00 | 55.1 | 381 | 165 | 4 | 3 | 380 | 4 | 381 | 1.7e-117 | 424.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07745.t1 | G7INK5 | 95.8 | 381 | 14 | 1 | 4 | 382 | 2 | 382 | 3.5e-209 | 736.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032779 | MS.gene07745 | PPI |
| MS.gene066288 | MS.gene07745 | PPI |
| MS.gene99026 | MS.gene07745 | PPI |
| MS.gene07745 | MS.gene49595 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07745.t1 | MTR_2g037770 | 95.801 | 381 | 14 | 1 | 4 | 382 | 2 | 382 | 0.0 | 750 |
| MS.gene07745.t1 | MTR_2g037770 | 96.000 | 300 | 10 | 1 | 2 | 299 | 1 | 300 | 0.0 | 595 |
| MS.gene07745.t1 | MTR_2g037770 | 96.309 | 298 | 9 | 1 | 4 | 299 | 2 | 299 | 0.0 | 592 |
| MS.gene07745.t1 | MTR_2g037790 | 71.733 | 375 | 105 | 1 | 9 | 382 | 10 | 384 | 0.0 | 566 |
| MS.gene07745.t1 | MTR_2g037790 | 71.733 | 375 | 105 | 1 | 9 | 382 | 13 | 387 | 0.0 | 566 |
| MS.gene07745.t1 | MTR_4g127510 | 67.801 | 382 | 119 | 3 | 5 | 382 | 1 | 382 | 0.0 | 528 |
| MS.gene07745.t1 | MTR_2g037770 | 94.757 | 267 | 12 | 1 | 4 | 268 | 2 | 268 | 0.0 | 523 |
| MS.gene07745.t1 | MTR_4g127490 | 67.018 | 379 | 118 | 4 | 9 | 380 | 14 | 392 | 0.0 | 514 |
| MS.gene07745.t1 | MTR_4g127490 | 67.018 | 379 | 118 | 4 | 9 | 380 | 16 | 394 | 0.0 | 514 |
| MS.gene07745.t1 | MTR_7g061830 | 26.488 | 336 | 215 | 11 | 46 | 359 | 83 | 408 | 3.10e-16 | 80.5 |
| MS.gene07745.t1 | MTR_3g097270 | 24.661 | 369 | 216 | 15 | 46 | 373 | 389 | 736 | 6.25e-13 | 70.9 |
| MS.gene07745.t1 | MTR_4g101410 | 27.515 | 338 | 204 | 15 | 46 | 355 | 170 | 494 | 8.20e-13 | 70.1 |
| MS.gene07745.t1 | MTR_4g101410 | 27.515 | 338 | 204 | 15 | 46 | 355 | 401 | 725 | 1.50e-12 | 69.7 |
| MS.gene07745.t1 | MTR_3g073040 | 25.134 | 374 | 210 | 17 | 46 | 373 | 413 | 762 | 1.59e-11 | 66.2 |
| MS.gene07745.t1 | MTR_3g073040 | 25.134 | 374 | 210 | 17 | 46 | 373 | 412 | 761 | 1.61e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07745.t1 | AT4G25850 | 55.118 | 381 | 165 | 4 | 3 | 380 | 4 | 381 | 8.87e-150 | 429 |
| MS.gene07745.t1 | AT4G25850 | 55.118 | 381 | 165 | 4 | 3 | 380 | 106 | 483 | 5.76e-148 | 427 |
| MS.gene07745.t1 | AT5G57240 | 52.895 | 380 | 173 | 4 | 5 | 381 | 1 | 377 | 2.81e-147 | 422 |
| MS.gene07745.t1 | AT5G57240 | 52.895 | 380 | 173 | 4 | 5 | 381 | 1 | 377 | 2.81e-147 | 422 |
| MS.gene07745.t1 | AT5G57240 | 52.895 | 380 | 173 | 4 | 5 | 381 | 1 | 377 | 2.81e-147 | 422 |
| MS.gene07745.t1 | AT5G57240 | 50.125 | 401 | 169 | 5 | 9 | 381 | 5 | 402 | 2.39e-141 | 408 |
| MS.gene07745.t1 | AT5G57240 | 50.125 | 401 | 169 | 5 | 9 | 381 | 5 | 402 | 2.39e-141 | 408 |
| MS.gene07745.t1 | AT4G25860 | 53.141 | 382 | 171 | 5 | 3 | 380 | 5 | 382 | 2.72e-140 | 404 |
| MS.gene07745.t1 | AT4G25860 | 53.989 | 376 | 165 | 5 | 9 | 380 | 5 | 376 | 7.20e-140 | 403 |
| MS.gene07745.t1 | AT4G25850 | 56.981 | 265 | 109 | 3 | 3 | 264 | 4 | 266 | 1.02e-103 | 307 |
| MS.gene07745.t1 | AT5G59420 | 27.628 | 333 | 213 | 11 | 46 | 358 | 78 | 402 | 1.39e-17 | 84.3 |
| MS.gene07745.t1 | AT3G09300 | 27.219 | 338 | 210 | 12 | 46 | 359 | 83 | 408 | 8.95e-17 | 82.0 |
| MS.gene07745.t1 | AT2G31030 | 25.905 | 359 | 219 | 17 | 46 | 373 | 136 | 478 | 8.83e-12 | 67.0 |
| MS.gene07745.t1 | AT2G31020 | 26.446 | 363 | 212 | 17 | 46 | 369 | 421 | 767 | 1.60e-11 | 66.2 |
| MS.gene07745.t1 | AT4G12460 | 25.201 | 373 | 238 | 17 | 30 | 373 | 127 | 487 | 2.70e-11 | 65.5 |
| MS.gene07745.t1 | AT4G12460 | 25.201 | 373 | 238 | 17 | 30 | 373 | 127 | 487 | 2.70e-11 | 65.5 |
| MS.gene07745.t1 | AT4G12460 | 25.201 | 373 | 238 | 17 | 30 | 373 | 127 | 487 | 2.70e-11 | 65.5 |
| MS.gene07745.t1 | AT4G12460 | 23.967 | 363 | 219 | 13 | 46 | 373 | 7 | 347 | 3.12e-11 | 64.7 |
| MS.gene07745.t1 | AT4G12460 | 25.201 | 373 | 238 | 17 | 30 | 373 | 316 | 676 | 4.04e-11 | 65.1 |
| MS.gene07745.t1 | AT4G12460 | 25.201 | 373 | 238 | 17 | 30 | 373 | 315 | 675 | 4.11e-11 | 65.1 |
| MS.gene07745.t1 | AT4G12460 | 25.201 | 373 | 238 | 17 | 30 | 373 | 315 | 675 | 4.11e-11 | 65.1 |
| MS.gene07745.t1 | AT1G13170 | 25.284 | 352 | 219 | 15 | 46 | 368 | 443 | 779 | 4.98e-11 | 65.1 |
Find 90 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCATTTCTTAACGAAAA+TGG | 0.219405 | 2.4:-52001270 | None:intergenic |
| ATAAGAATTCTTCCTGTTAC+TGG | 0.231549 | 2.4:+52004287 | MS.gene07745:CDS |
| AATATACGTTGCAATAAATT+AGG | 0.240996 | 2.4:-52001318 | None:intergenic |
| TACATAAGTCAATCATTCTT+TGG | 0.268802 | 2.4:+52004374 | MS.gene07745:CDS |
| AGTCAATCATTCTTTGGATT+TGG | 0.271109 | 2.4:+52004380 | MS.gene07745:CDS |
| AGAATTCTTATAAAGAGATT+TGG | 0.285918 | 2.4:-52004275 | None:intergenic |
| TCACCAAGAATTGGATTATA+AGG | 0.307580 | 2.4:-52003085 | None:intergenic |
| GCTCCTTATAATCCAATTCT+TGG | 0.309231 | 2.4:+52003082 | MS.gene07745:CDS |
| TGAGACAGTATGAAATGTTT+AGG | 0.317403 | 2.4:-52005459 | None:intergenic |
| TATTGATTCACTCACATCTA+AGG | 0.332350 | 2.4:+52004433 | MS.gene07745:CDS |
| TCCTGTTACTGGAGTTGATT+GGG | 0.344104 | 2.4:+52004298 | MS.gene07745:CDS |
| TGGTAATAGAAGATTAATAA+AGG | 0.358423 | 2.4:+52004403 | MS.gene07745:CDS |
| TTCCTGTTACTGGAGTTGAT+TGG | 0.361020 | 2.4:+52004297 | MS.gene07745:CDS |
| TTCCCAGTCTTTGTTCAAGA+TGG | 0.361440 | 2.4:-52005352 | None:intergenic |
| CTCAAAGCAAAGAAGGGTCT+TGG | 0.373124 | 2.4:+52005478 | MS.gene07745:CDS |
| GACTTTGGAAAGTTGAATAA+TGG | 0.375860 | 2.4:-52002914 | None:intergenic |
| AGGAACCCAAGTTTCTCCTT+TGG | 0.388611 | 2.4:-52005439 | None:intergenic |
| ACAAATTACAAGGTTACAAT+AGG | 0.388938 | 2.4:-52005537 | None:intergenic |
| TGATGAGTCTCACCAAGAAT+TGG | 0.396025 | 2.4:-52003094 | None:intergenic |
| ACCCAATCAACTCCAGTAAC+AGG | 0.403466 | 2.4:-52004299 | None:intergenic |
| TTACTGGAGTTGATTGGGTT+GGG | 0.408955 | 2.4:+52004303 | MS.gene07745:CDS |
| AGTCTTTGTTCAAGATGGCT+TGG | 0.409175 | 2.4:-52005347 | None:intergenic |
| GGTAATAGAAGATTAATAAA+GGG | 0.417175 | 2.4:+52004404 | MS.gene07745:CDS |
| CAATCATTCTTTGGATTTGG+TGG | 0.424280 | 2.4:+52004383 | MS.gene07745:CDS |
| AACATCAGGTGTATAGAAAC+AGG | 0.435930 | 2.4:+52004332 | MS.gene07745:CDS |
| TCTTAATGTCCTACTAGAAC+AGG | 0.449092 | 2.4:+52003132 | MS.gene07745:CDS |
| TCAAAGCAAAGAAGGGTCTT+GGG | 0.449719 | 2.4:+52005479 | MS.gene07745:CDS |
| AAGCCATCTTGAACAAAGAC+TGG | 0.452824 | 2.4:+52005349 | MS.gene07745:CDS |
| CAGTTAATGGTCACTGGGAT+AGG | 0.453037 | 2.4:+52004465 | MS.gene07745:CDS |
| ATGCTAAAGAAGTCATTTCA+AGG | 0.455627 | 2.4:+52004667 | MS.gene07745:CDS |
| GAGAATCCAAAGGAGAAACT+TGG | 0.458259 | 2.4:+52005433 | MS.gene07745:CDS |
| TAGCACTGAAGTTGTGACTT+TGG | 0.464309 | 2.4:-52002929 | None:intergenic |
| TAGGACATTAAGATTTCCCT+TGG | 0.465061 | 2.4:-52003122 | None:intergenic |
| CCGTCTCGTCAGTTGCATGA+AGG | 0.469096 | 2.4:-52003803 | None:intergenic |
| CGGAAAACATAGAAATCATA+TGG | 0.479297 | 2.4:+52003823 | MS.gene07745:CDS |
| ATACAAGTAATGGTGAAGAA+AGG | 0.481881 | 2.4:+52004634 | MS.gene07745:CDS |
| GAGTGTGTGGCCAACTGAAT+CGG | 0.482219 | 2.4:+52005302 | MS.gene07745:intron |
| CGTCTCGTCAGTTGCATGAA+GGG | 0.484476 | 2.4:-52003802 | None:intergenic |
| TATCCTGCTGCAAAGTTCAA+TGG | 0.486814 | 2.4:+52003852 | MS.gene07745:CDS |
| AAGCTCAGGTGCACGGAAAA+CGG | 0.491909 | 2.4:+52004207 | MS.gene07745:CDS |
| CATATGTCTCTCCATGATTG+AGG | 0.492960 | 2.4:-52004241 | None:intergenic |
| ATACTGTCTCAAAGCAAAGA+AGG | 0.493843 | 2.4:+52005471 | MS.gene07745:CDS |
| AAACTGAGGCTCCTCAATCA+TGG | 0.503738 | 2.4:+52004230 | MS.gene07745:CDS |
| GTTACTGGAGTTGATTGGGT+TGG | 0.503780 | 2.4:+52004302 | MS.gene07745:CDS |
| TACAAGTAATGGTGAAGAAA+GGG | 0.504165 | 2.4:+52004635 | MS.gene07745:CDS |
| AGGTACTTCAGTGGAAGCTC+AGG | 0.510651 | 2.4:+52004193 | MS.gene07745:intron |
| CATCCTTGACAGTAGGAGCT+TGG | 0.517595 | 2.4:-52004692 | None:intergenic |
| GGGTTGGGAATGTCAACATC+AGG | 0.517804 | 2.4:+52004318 | MS.gene07745:CDS |
| GCATGAAGGGCAGATACAGC+AGG | 0.518949 | 2.4:-52003789 | None:intergenic |
| TTACCATTGAACTTTGCAGC+AGG | 0.521587 | 2.4:-52003855 | None:intergenic |
| ACTGTTTACCTATTCAAAAG+TGG | 0.524403 | 2.4:+52005502 | MS.gene07745:CDS |
| CTTCTTAAGAATGTGCGGCC+AGG | 0.525043 | 2.4:+52001345 | MS.gene07745:CDS |
| AAACATGTACCTGTTCTAGT+AGG | 0.534118 | 2.4:-52003141 | None:intergenic |
| CAACTGAATCGGCTCTTATG+TGG | 0.539173 | 2.4:+52005313 | MS.gene07745:CDS |
| GTTTCCTTCATCAGAGTGTG+TGG | 0.540792 | 2.4:+52005289 | MS.gene07745:intron |
| GACTCATATCTGTTGTAGCA+TGG | 0.556631 | 2.4:+52003023 | MS.gene07745:CDS |
| TTGACTTATGTAACTTAACT+CGG | 0.556810 | 2.4:-52004363 | None:intergenic |
| AAGAAATGATTCAGATTCAG+AGG | 0.558103 | 2.4:+52001281 | MS.gene07745:CDS |
| AAGTCACAACTTCAGTGCTA+TGG | 0.558780 | 2.4:+52002932 | MS.gene07745:CDS |
| TGAGACTCATCATGTTTCCA+AGG | 0.561100 | 2.4:+52003105 | MS.gene07745:CDS |
| TTACTAAGCAAGTGTAACAC+TGG | 0.562854 | 2.4:+52002983 | MS.gene07745:CDS |
| TACTGTCTCAAAGCAAAGAA+GGG | 0.565971 | 2.4:+52005472 | MS.gene07745:CDS |
| CACATAAGAGCCGATTCAGT+TGG | 0.569126 | 2.4:-52005312 | None:intergenic |
| AGAATCCAAAGGAGAAACTT+GGG | 0.570870 | 2.4:+52005434 | MS.gene07745:CDS |
| GTAATAGAAGATTAATAAAG+GGG | 0.575521 | 2.4:+52004405 | MS.gene07745:CDS |
| AAGGTTACAATAGGAGAAGG+TGG | 0.579639 | 2.4:-52005528 | None:intergenic |
| CCTTCATGCAACTGACGAGA+CGG | 0.581666 | 2.4:+52003803 | MS.gene07745:CDS |
| GCTTAGTAAGTCTGAAGATG+TGG | 0.584145 | 2.4:-52002969 | None:intergenic |
| CTGTTTACCTATTCAAAAGT+GGG | 0.584359 | 2.4:+52005503 | MS.gene07745:CDS |
| AAACTATATGACAAATTACA+AGG | 0.584395 | 2.4:-52005547 | None:intergenic |
| TCCTACTGTCAAGGATGCAG+AGG | 0.585602 | 2.4:+52004698 | MS.gene07745:CDS |
| AAGAGAAGCAAAGAAAACTC+TGG | 0.586486 | 2.4:+52005380 | MS.gene07745:CDS |
| TACAAGGTTACAATAGGAGA+AGG | 0.591679 | 2.4:-52005531 | None:intergenic |
| AAACGTGTGAGATCAGATCC+TGG | 0.604506 | 2.4:-52001363 | None:intergenic |
| GCTCCAAGCTCCTACTGTCA+AGG | 0.607943 | 2.4:+52004689 | MS.gene07745:CDS |
| TCAGTGGAAGCTCAGGTGCA+CGG | 0.614792 | 2.4:+52004200 | MS.gene07745:CDS |
| TACTAAGCAAGTGTAACACT+GGG | 0.618051 | 2.4:+52002984 | MS.gene07745:CDS |
| TTTGGAAAGTTGAATAATGG+TGG | 0.620708 | 2.4:-52002911 | None:intergenic |
| ACCTCTGCATCCTTGACAGT+AGG | 0.622915 | 2.4:-52004699 | None:intergenic |
| TAAGTCTTCTTAAGAATGTG+CGG | 0.626069 | 2.4:+52001340 | MS.gene07745:CDS |
| TCAAGAGAAAGAGAATCCAA+AGG | 0.626341 | 2.4:+52005423 | MS.gene07745:CDS |
| ACACTGAAGGATACAAGTAA+TGG | 0.634095 | 2.4:+52004624 | MS.gene07745:CDS |
| AGCCATCTTGAACAAAGACT+GGG | 0.635182 | 2.4:+52005350 | MS.gene07745:CDS |
| AGGTTACAATAGGAGAAGGT+GGG | 0.641253 | 2.4:-52005527 | None:intergenic |
| GTGTATAGAAACAGGTCTTG+TGG | 0.641940 | 2.4:+52004340 | MS.gene07745:CDS |
| GAGACTCATCATGTTTCCAA+GGG | 0.644355 | 2.4:+52003106 | MS.gene07745:CDS |
| TGCACGGAAAACGGAAACTG+AGG | 0.670770 | 2.4:+52004216 | MS.gene07745:CDS |
| CATGAAGGGCAGATACAGCA+GGG | 0.681197 | 2.4:-52003788 | None:intergenic |
| ATGCAGTACTGTAACACTGA+AGG | 0.694791 | 2.4:+52004611 | MS.gene07745:intron |
| GAAGGGCAGATACAGCAGGG+TGG | 0.789321 | 2.4:-52003785 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTTTTTTTTTTA+GGG | - | chr2.4:51999983-52000002 | None:intergenic | 0.0% |
| !! | ATACATGTATAAAATAATAA+TGG | - | chr2.4:51999825-51999844 | None:intergenic | 10.0% |
| !! | TGAAAAAAAAAATTATTTGA+CGG | + | chr2.4:52000950-52000969 | MS.gene07745:intron | 10.0% |
| !!! | ACAAAAAGTTATTTTTTTTA+AGG | + | chr2.4:52000882-52000901 | MS.gene07745:intron | 10.0% |
| !!! | TCATTTTTATTTCATTTTAT+TGG | + | chr2.4:52002323-52002342 | MS.gene07745:intron | 10.0% |
| !!! | TGATTTTCTAAAATTATTAT+CGG | - | chr2.4:52002707-52002726 | None:intergenic | 10.0% |
| !! | AATCGAAGTATAAATATTTA+CGG | + | chr2.4:52004825-52004844 | MS.gene07745:intron | 15.0% |
| !! | ACGTAATTTCTTAATAAAAA+CGG | - | chr2.4:52000741-52000760 | None:intergenic | 15.0% |
| !! | ATAAAATAAACCAAATATGT+AGG | + | chr2.4:52004049-52004068 | MS.gene07745:intron | 15.0% |
| !! | ATTATCATATGAAGAAAATA+TGG | + | chr2.4:52001609-52001628 | MS.gene07745:intron | 15.0% |
| !! | CATCACATTATAAATTAATT+AGG | - | chr2.4:52004594-52004613 | None:intergenic | 15.0% |
| !! | GAAAAAAAAAATTATTTGAC+GGG | + | chr2.4:52000951-52000970 | MS.gene07745:intron | 15.0% |
| !!! | AAAAAATTTAATTGCACTTT+TGG | - | chr2.4:52001934-52001953 | None:intergenic | 15.0% |
| !!! | AACACAATGTTATTTTTTTA+TGG | - | chr2.4:52002870-52002889 | None:intergenic | 15.0% |
| !!! | AATTTCATACAATATTTTAC+TGG | - | chr2.4:52001143-52001162 | None:intergenic | 15.0% |
| !!! | ATAAGATATTTTTTTGTTGT+TGG | - | chr2.4:52002075-52002094 | None:intergenic | 15.0% |
| !!! | CAATTAAATTTTTTGTTTGA+AGG | + | chr2.4:52001940-52001959 | MS.gene07745:intron | 15.0% |
| !!! | TCTATTTCAAATTAGTTTTT+AGG | + | chr2.4:52000373-52000392 | MS.gene07745:intron | 15.0% |
| !!! | TGATTTTTTGTTGTATAAAT+TGG | - | chr2.4:52002272-52002291 | None:intergenic | 15.0% |
| !!! | TTAAACTTAATCTCTAAAAT+TGG | + | chr2.4:52000635-52000654 | MS.gene07745:intron | 15.0% |
| !!! | TTTTTATTTCATTTTATTGG+TGG | + | chr2.4:52002326-52002345 | MS.gene07745:intron | 15.0% |
| !!! | TTTTTTATTTTTTGGTCAAT+GGG | + | chr2.4:52001851-52001870 | MS.gene07745:intron | 15.0% |
| !! | AAAAAATAACATTGTGTTGT+TGG | + | chr2.4:52002872-52002891 | MS.gene07745:intron | 20.0% |
| !! | AAAGTAATCAAGAAATTATG+AGG | + | chr2.4:52001557-52001576 | MS.gene07745:intron | 20.0% |
| !! | AATATACGTTGCAATAAATT+AGG | - | chr2.4:52001321-52001340 | None:intergenic | 20.0% |
| !! | AATTATGTATAACCTTCATT+CGG | - | chr2.4:52001025-52001044 | None:intergenic | 20.0% |
| !! | AATTCCTTCAACTAATTTAA+TGG | - | chr2.4:52000066-52000085 | None:intergenic | 20.0% |
| !! | AGAATTCTTATAAAGAGATT+TGG | - | chr2.4:52004278-52004297 | None:intergenic | 20.0% |
| !! | ATAAAAACAAGCATATCTTT+CGG | - | chr2.4:52003424-52003443 | None:intergenic | 20.0% |
| !! | ATACTGACAATGTAAATTTA+CGG | + | chr2.4:52003590-52003609 | MS.gene07745:intron | 20.0% |
| !! | ATACTTTCTTCTTTCTTATT+TGG | + | chr2.4:52001412-52001431 | MS.gene07745:intron | 20.0% |
| !! | ATGTTAAATTATAGACCAAT+CGG | + | chr2.4:52003471-52003490 | MS.gene07745:intron | 20.0% |
| !! | CGGAAAAATAAATAAATTAG+AGG | + | chr2.4:52005143-52005162 | MS.gene07745:intron | 20.0% |
| !! | GATTTGACTATAAAAAAAAC+AGG | - | chr2.4:52003506-52003525 | None:intergenic | 20.0% |
| !! | GGTAATAGAAGATTAATAAA+GGG | + | chr2.4:52004404-52004423 | MS.gene07745:CDS | 20.0% |
| !! | GTAAATATTTATACTTCGAT+TGG | - | chr2.4:52004826-52004845 | None:intergenic | 20.0% |
| !! | GTAATAGAAGATTAATAAAG+GGG | + | chr2.4:52004405-52004424 | MS.gene07745:CDS | 20.0% |
| !! | TAAATTGGATATTACAACTT+TGG | - | chr2.4:52002257-52002276 | None:intergenic | 20.0% |
| !! | TAATTAGGAAGATAGTATAT+AGG | - | chr2.4:52004579-52004598 | None:intergenic | 20.0% |
| !! | TAATTTAAGAAGTGGTAAAA+TGG | + | chr2.4:52000573-52000592 | MS.gene07745:intron | 20.0% |
| !! | TACAAGAATTCAATCATTTA+TGG | - | chr2.4:52003742-52003761 | None:intergenic | 20.0% |
| !! | TACTAAAACATTGGATTAAA+CGG | - | chr2.4:52000602-52000621 | None:intergenic | 20.0% |
| !! | TATCTAACAATGTTTGAATT+AGG | + | chr2.4:52002174-52002193 | MS.gene07745:intron | 20.0% |
| !! | TATTAAACACACTAATAAAG+CGG | + | chr2.4:52000665-52000684 | MS.gene07745:intron | 20.0% |
| !! | TGGTAATAGAAGATTAATAA+AGG | + | chr2.4:52004403-52004422 | MS.gene07745:CDS | 20.0% |
| !! | TGTTAAGAATAACAAATTGA+TGG | - | chr2.4:52004541-52004560 | None:intergenic | 20.0% |
| !! | TTAAATTAGTTGAAGGAATT+TGG | + | chr2.4:52000066-52000085 | MS.gene07745:intron | 20.0% |
| !! | TTTAAAAAAACTGCATGAAA+GGG | - | chr2.4:52002393-52002412 | None:intergenic | 20.0% |
| !!! | AAATAAAAACTTTGGCTTTA+CGG | - | chr2.4:52002035-52002054 | None:intergenic | 20.0% |
| !!! | AATTTCTTTTGTTTTTCCAT+AGG | - | chr2.4:52003309-52003328 | None:intergenic | 20.0% |
| !!! | AGAGATTTTGTCAAAAATAA+CGG | - | chr2.4:52001587-52001606 | None:intergenic | 20.0% |
| !!! | AGCTTTTTAGTTTATTTTTC+CGG | - | chr2.4:51999742-51999761 | None:intergenic | 20.0% |
| !!! | ATTCATTTAAAGCAAATTCA+TGG | - | chr2.4:52000707-52000726 | None:intergenic | 20.0% |
| !!! | ATTTTTTGGTCAAAAAACTA+GGG | + | chr2.4:52001876-52001895 | MS.gene07745:intron | 20.0% |
| !!! | CTTTTTTTCTTTGAATTTAG+AGG | + | chr2.4:52001493-52001512 | MS.gene07745:intron | 20.0% |
| !!! | GAAGAGTGTTTTTTATTTTT+TGG | + | chr2.4:52001843-52001862 | MS.gene07745:intron | 20.0% |
| !!! | GTTTTTATTAAGAAATTACG+TGG | + | chr2.4:52000740-52000759 | MS.gene07745:intron | 20.0% |
| !!! | GTTTTTTATTTTTTGGTCAA+TGG | + | chr2.4:52001850-52001869 | MS.gene07745:intron | 20.0% |
| !!! | TATTTTTTGGTCAAAAAACT+AGG | + | chr2.4:52001875-52001894 | MS.gene07745:intron | 20.0% |
| !!! | TGTGAATATGATAATGTATT+TGG | - | chr2.4:52001173-52001192 | None:intergenic | 20.0% |
| !!! | TTAGTTTTAAAAAGAATGAG+TGG | - | chr2.4:52002139-52002158 | None:intergenic | 20.0% |
| !!! | TTCTTCATTTCTTATGTTTT+AGG | + | chr2.4:52001443-52001462 | MS.gene07745:intron | 20.0% |
| !!! | TTTTAGGATGAGTAAAAATA+GGG | + | chr2.4:52001459-52001478 | MS.gene07745:intron | 20.0% |
| ! | AACATAGAGAAAAGATAAGA+CGG | - | chr2.4:51999647-51999666 | None:intergenic | 25.0% |
| ! | AAGATTCAATCATCAACATA+TGG | - | chr2.4:52001665-52001684 | None:intergenic | 25.0% |
| ! | AATCATCAACATATGGTTAA+AGG | - | chr2.4:52001658-52001677 | None:intergenic | 25.0% |
| ! | ACAGTTGTATTGAAAATGTA+CGG | + | chr2.4:52000194-52000213 | MS.gene07745:intron | 25.0% |
| ! | ACATCCATTAAATTAGTTGA+AGG | + | chr2.4:52000059-52000078 | MS.gene07745:intron | 25.0% |
| ! | AGTGAACAAAAAAAATGTAC+AGG | - | chr2.4:52002111-52002130 | None:intergenic | 25.0% |
| ! | ATACTTGTTCTAACTCAATT+GGG | - | chr2.4:52003968-52003987 | None:intergenic | 25.0% |
| ! | ATCATCAACATATGGTTAAA+GGG | - | chr2.4:52001657-52001676 | None:intergenic | 25.0% |
| ! | ATCGATACGAACAAAAATTA+AGG | - | chr2.4:51999777-51999796 | None:intergenic | 25.0% |
| ! | ATTATATATACCAAAGTTGC+CGG | + | chr2.4:52003326-52003345 | MS.gene07745:intron | 25.0% |
| ! | CAAAAGTAAAAGCTATAAAG+TGG | - | chr2.4:52001754-52001773 | None:intergenic | 25.0% |
| ! | CAATGAATAATCTGTTAAGT+TGG | + | chr2.4:52003652-52003671 | MS.gene07745:intron | 25.0% |
| ! | CTGTGAAAACAAAATTAAGT+TGG | - | chr2.4:52002215-52002234 | None:intergenic | 25.0% |
| ! | CTTCTTAAATTATTAGTGAC+AGG | - | chr2.4:52000565-52000584 | None:intergenic | 25.0% |
| ! | GAAAATTTATGTTAACGTTG+AGG | + | chr2.4:52001726-52001745 | MS.gene07745:intron | 25.0% |
| ! | GAATCATTTCTTAACGAAAA+TGG | - | chr2.4:52001273-52001292 | None:intergenic | 25.0% |
| ! | GGTAATTTATAACCTTCATT+CGG | - | chr2.4:52001119-52001138 | None:intergenic | 25.0% |
| ! | GTCAAATCCATCTTAAAATA+TGG | + | chr2.4:52003518-52003537 | MS.gene07745:intron | 25.0% |
| ! | GTCACTAATAATTTAAGAAG+TGG | + | chr2.4:52000565-52000584 | MS.gene07745:intron | 25.0% |
| ! | GTTTAAAAAAACTGCATGAA+AGG | - | chr2.4:52002394-52002413 | None:intergenic | 25.0% |
| ! | TACATAAGTCAATCATTCTT+TGG | + | chr2.4:52004374-52004393 | MS.gene07745:CDS | 25.0% |
| ! | TAGAATTTCATTTGCTTCTT+TGG | - | chr2.4:52000540-52000559 | None:intergenic | 25.0% |
| ! | TATAAAAAAAACAGGTAAGC+CGG | - | chr2.4:52003498-52003517 | None:intergenic | 25.0% |
| ! | TATGATATTTAACCGAATGA+AGG | + | chr2.4:52001010-52001029 | MS.gene07745:intron | 25.0% |
| ! | TCAACTATCTACTAAAACAT+TGG | - | chr2.4:52000611-52000630 | None:intergenic | 25.0% |
| ! | TGTCTATCCAAAAAAAATGT+AGG | + | chr2.4:52004173-52004192 | MS.gene07745:intron | 25.0% |
| ! | TTAAAAAAACTGCATGAAAG+GGG | - | chr2.4:52002392-52002411 | None:intergenic | 25.0% |
| ! | TTGACTTATGTAACTTAACT+CGG | - | chr2.4:52004366-52004385 | None:intergenic | 25.0% |
| ! | TTTGAATTTAGAGGAGAAAT+AGG | + | chr2.4:52001502-52001521 | MS.gene07745:intron | 25.0% |
| ! | TTTGCACTATATAGTTTAGT+AGG | + | chr2.4:52000506-52000525 | MS.gene07745:intron | 25.0% |
| !! | AAGGTTCTTTTTACAGTTAA+TGG | + | chr2.4:52004452-52004471 | MS.gene07745:CDS | 25.0% |
| !! | ATATGTTTAGTTTCGTGTTA+CGG | + | chr2.4:52001687-52001706 | MS.gene07745:intron | 25.0% |
| !! | TCTAAAATTATTATCGGTGT+CGG | - | chr2.4:52002701-52002720 | None:intergenic | 25.0% |
| !! | TTCATACAATATTTTACTGG+TGG | - | chr2.4:52001140-52001159 | None:intergenic | 25.0% |
| !! | TTTAGGATGAGTAAAAATAG+GGG | + | chr2.4:52001460-52001479 | MS.gene07745:intron | 25.0% |
| !!! | AATGTTTTAGTAGATAGTTG+AGG | + | chr2.4:52000610-52000629 | MS.gene07745:intron | 25.0% |
| !!! | AATTTGTTATATGAAGATGC+AGG | + | chr2.4:52001218-52001237 | MS.gene07745:intron | 25.0% |
| !!! | ACTTAATTTTGTTTTCACAG+TGG | + | chr2.4:52002215-52002234 | MS.gene07745:intron | 25.0% |
| !!! | GATTGGTCTATAATTTAACA+TGG | - | chr2.4:52003472-52003491 | None:intergenic | 25.0% |
| !!! | GTAAAACTTTTTTGCTCTAT+TGG | - | chr2.4:52002515-52002534 | None:intergenic | 25.0% |
| !!! | GTATTTTTTAGAGAGCTTTT+CGG | + | chr2.4:52000801-52000820 | MS.gene07745:intron | 25.0% |
| !!! | GTTTTAGGATGAGTAAAAAT+AGG | + | chr2.4:52001458-52001477 | MS.gene07745:intron | 25.0% |
| !!! | TAAACTAAAAAGCTGTTTTC+CGG | + | chr2.4:51999748-51999767 | MS.gene07745:intron | 25.0% |
| !!! | TATAGTACTTTTTTGTGTAC+CGG | - | chr2.4:52005082-52005101 | None:intergenic | 25.0% |
| !!! | TGAAGTACCTACATTTTTTT+TGG | - | chr2.4:52004183-52004202 | None:intergenic | 25.0% |
| !!! | TGTGACAACTTTTTTTTTAC+TGG | + | chr2.4:52000265-52000284 | MS.gene07745:intron | 25.0% |
| AAAAAATGTAGGTACTTCAG+TGG | + | chr2.4:52004184-52004203 | MS.gene07745:intron | 30.0% | |
| AAAATGTACAGGAAAAAGAG+TGG | - | chr2.4:52002100-52002119 | None:intergenic | 30.0% | |
| AAGAAATGATTCAGATTCAG+AGG | + | chr2.4:52001281-52001300 | MS.gene07745:CDS | 30.0% | |
| ACTATGATTCAAACCAAAGT+TGG | - | chr2.4:52003248-52003267 | None:intergenic | 30.0% | |
| ACTCGATTAGAATGTTAAGT+TGG | - | chr2.4:52003388-52003407 | None:intergenic | 30.0% | |
| ACTGTTTACCTATTCAAAAG+TGG | + | chr2.4:52005502-52005521 | MS.gene07745:CDS | 30.0% | |
| AGTACACACATGCATAAATA+TGG | + | chr2.4:52002420-52002439 | MS.gene07745:intron | 30.0% | |
| AGTCAATCATTCTTTGGATT+TGG | + | chr2.4:52004380-52004399 | MS.gene07745:CDS | 30.0% | |
| ATAAGAATTCTTCCTGTTAC+TGG | + | chr2.4:52004287-52004306 | MS.gene07745:CDS | 30.0% | |
| ATACAAGTAATGGTGAAGAA+AGG | + | chr2.4:52004634-52004653 | MS.gene07745:CDS | 30.0% | |
| ATGCTAAAGAAGTCATTTCA+AGG | + | chr2.4:52004667-52004686 | MS.gene07745:CDS | 30.0% | |
| ATGTGAAGAAGCTAATAACA+AGG | - | chr2.4:51999710-51999729 | None:intergenic | 30.0% | |
| CATACTTGTTCTAACTCAAT+TGG | - | chr2.4:52003969-52003988 | None:intergenic | 30.0% | |
| CATTGTCAGTATTACATTAG+AGG | - | chr2.4:52003582-52003601 | None:intergenic | 30.0% | |
| CATTTCTTATCTCGAAATAG+TGG | + | chr2.4:52004513-52004532 | MS.gene07745:intron | 30.0% | |
| CGGAAAACATAGAAATCATA+TGG | + | chr2.4:52003823-52003842 | MS.gene07745:CDS | 30.0% | |
| CTCGATTAGAATGTTAAGTT+GGG | - | chr2.4:52003387-52003406 | None:intergenic | 30.0% | |
| CTGTTTACCTATTCAAAAGT+GGG | + | chr2.4:52005503-52005522 | MS.gene07745:CDS | 30.0% | |
| GAAACATTGACATTAGAAGT+AGG | + | chr2.4:52004994-52005013 | MS.gene07745:intron | 30.0% | |
| GCATCACATTACAATGTTAT+TGG | - | chr2.4:52002546-52002565 | None:intergenic | 30.0% | |
| TAAGTCTTCTTAAGAATGTG+CGG | + | chr2.4:52001340-52001359 | MS.gene07745:CDS | 30.0% | |
| TACAAGTAATGGTGAAGAAA+GGG | + | chr2.4:52004635-52004654 | MS.gene07745:CDS | 30.0% | |
| TACATGCTTTATGCTTAGTT+TGG | + | chr2.4:52003176-52003195 | MS.gene07745:intron | 30.0% | |
| TACTTGAGAATCAAGTAAAG+CGG | + | chr2.4:52005103-52005122 | MS.gene07745:intron | 30.0% | |
| TCACCAAGAATTGGATTATA+AGG | - | chr2.4:52003088-52003107 | None:intergenic | 30.0% | |
| TCTTGTATTTGATTGTTTGC+AGG | + | chr2.4:52003755-52003774 | MS.gene07745:intron | 30.0% | |
| TGAGACAGTATGAAATGTTT+AGG | - | chr2.4:52005462-52005481 | None:intergenic | 30.0% | |
| TGTCTGATTATAGAAACCTA+TGG | + | chr2.4:52003290-52003309 | MS.gene07745:intron | 30.0% | |
| TTGACGTTCAATTAAAGTTG+TGG | + | chr2.4:52004022-52004041 | MS.gene07745:intron | 30.0% | |
| TTTGGAAAGTTGAATAATGG+TGG | - | chr2.4:52002914-52002933 | None:intergenic | 30.0% | |
| ! | GACTTTGGAAAGTTGAATAA+TGG | - | chr2.4:52002917-52002936 | None:intergenic | 30.0% |
| ! | TTTCATTTTATTGGTGGAGT+AGG | + | chr2.4:52002332-52002351 | MS.gene07745:intron | 30.0% |
| ! | TTTTACAGTTAATGGTCACT+GGG | + | chr2.4:52004460-52004479 | MS.gene07745:CDS | 30.0% |
| ! | TTTTTACAGTTAATGGTCAC+TGG | + | chr2.4:52004459-52004478 | MS.gene07745:CDS | 30.0% |
| !! | AAAATATGGACTAGTCGAAT+CGG | + | chr2.4:52003532-52003551 | MS.gene07745:intron | 30.0% |
| !! | ATTACATTAGAGGTGTCAAA+TGG | - | chr2.4:52003572-52003591 | None:intergenic | 30.0% |
| !! | ATTAGAATGTTAAGTTGGGT+TGG | - | chr2.4:52003383-52003402 | None:intergenic | 30.0% |
| !! | CTTTGGTTTGAATCATAGTT+AGG | + | chr2.4:52003249-52003268 | MS.gene07745:intron | 30.0% |
| !! | GACTAGTCCATATTTTAAGA+TGG | - | chr2.4:52003528-52003547 | None:intergenic | 30.0% |
| !! | TATTGATTCACTCACATCTA+AGG | + | chr2.4:52004433-52004452 | MS.gene07745:CDS | 30.0% |
| !! | TCTGTTAAGTTGGTGAAATA+TGG | + | chr2.4:52003662-52003681 | MS.gene07745:intron | 30.0% |
| !! | TTAAGTTGGTGAAATATGGT+TGG | + | chr2.4:52003666-52003685 | MS.gene07745:intron | 30.0% |
| !!! | AAAAGTTTTAAGAAGGTCCA+GGG | + | chr2.4:52004121-52004140 | MS.gene07745:intron | 30.0% |
| !!! | ACACAGGAAAAGTTTTAAGA+AGG | + | chr2.4:52004114-52004133 | MS.gene07745:intron | 30.0% |
| !!! | CAATTTTTTCCACAGTTTGA+AGG | - | chr2.4:52004912-52004931 | None:intergenic | 30.0% |
| !!! | TTGGTCAATGGGATATTTTT+TGG | + | chr2.4:52001862-52001881 | MS.gene07745:intron | 30.0% |
| AAACATGTACCTGTTCTAGT+AGG | - | chr2.4:52003144-52003163 | None:intergenic | 35.0% | |
| AAATTATAGACCAATCGGAC+CGG | + | chr2.4:52003476-52003495 | MS.gene07745:intron | 35.0% | |
| AACATCAGGTGTATAGAAAC+AGG | + | chr2.4:52004332-52004351 | MS.gene07745:CDS | 35.0% | |
| AAGAGAAGCAAAGAAAACTC+TGG | + | chr2.4:52005380-52005399 | MS.gene07745:CDS | 35.0% | |
| ACACTGAAGGATACAAGTAA+TGG | + | chr2.4:52004624-52004643 | MS.gene07745:CDS | 35.0% | |
| AGAATCCAAAGGAGAAACTT+GGG | + | chr2.4:52005434-52005453 | MS.gene07745:CDS | 35.0% | |
| ATACTGTCTCAAAGCAAAGA+AGG | + | chr2.4:52005471-52005490 | MS.gene07745:CDS | 35.0% | |
| ATGCGCAATATGTGTGTATA+TGG | + | chr2.4:52004730-52004749 | MS.gene07745:intron | 35.0% | |
| ATGTCACATGTCATACTCTT+TGG | - | chr2.4:52000985-52001004 | None:intergenic | 35.0% | |
| ATGTGCACGAAAAGAGAAAA+AGG | - | chr2.4:51999918-51999937 | None:intergenic | 35.0% | |
| CAATCATTCTTTGGATTTGG+TGG | + | chr2.4:52004383-52004402 | MS.gene07745:CDS | 35.0% | |
| CATAAGTCAATGCACATTGA+TGG | - | chr2.4:52001088-52001107 | None:intergenic | 35.0% | |
| CGAACAAAAATTAAGGTTGC+CGG | - | chr2.4:51999770-51999789 | None:intergenic | 35.0% | |
| GACTGTAGTACCTACATATT+TGG | - | chr2.4:52004062-52004081 | None:intergenic | 35.0% | |
| GATATCATGTAATTGTGCAG+TGG | + | chr2.4:52001782-52001801 | MS.gene07745:intron | 35.0% | |
| GCTCCTTATAATCCAATTCT+TGG | + | chr2.4:52003082-52003101 | MS.gene07745:CDS | 35.0% | |
| TACAAGGTTACAATAGGAGA+AGG | - | chr2.4:52005534-52005553 | None:intergenic | 35.0% | |
| TACTAAGCAAGTGTAACACT+GGG | + | chr2.4:52002984-52003003 | MS.gene07745:CDS | 35.0% | |
| TACTGTCTCAAAGCAAAGAA+GGG | + | chr2.4:52005472-52005491 | MS.gene07745:CDS | 35.0% | |
| TAGGACATTAAGATTTCCCT+TGG | - | chr2.4:52003125-52003144 | None:intergenic | 35.0% | |
| TATCTACAAGCTATGAAGCA+CGG | + | chr2.4:52002646-52002665 | MS.gene07745:intron | 35.0% | |
| TCAAGAGAAAGAGAATCCAA+AGG | + | chr2.4:52005423-52005442 | MS.gene07745:CDS | 35.0% | |
| TCTTAATGTCCTACTAGAAC+AGG | + | chr2.4:52003132-52003151 | MS.gene07745:CDS | 35.0% | |
| TGAAGAAAATATGGTCCAAG+TGG | + | chr2.4:52001618-52001637 | MS.gene07745:intron | 35.0% | |
| TGCGCAATATGTGTGTATAT+GGG | + | chr2.4:52004731-52004750 | MS.gene07745:intron | 35.0% | |
| TGTAAGCACAAAACCACAAA+TGG | - | chr2.4:52000042-52000061 | None:intergenic | 35.0% | |
| TTACTAAGCAAGTGTAACAC+TGG | + | chr2.4:52002983-52003002 | MS.gene07745:CDS | 35.0% | |
| TTAGCGATTATGTTAAACCC+TGG | - | chr2.4:52004141-52004160 | None:intergenic | 35.0% | |
| TTCTTCACATGAATTTCTGC+CGG | + | chr2.4:51999720-51999739 | MS.gene07745:intron | 35.0% | |
| ! | GGTCTAAAGTAGCTAAATTG+AGG | + | chr2.4:52001897-52001916 | MS.gene07745:intron | 35.0% |
| ! | TAGAGTGAATGCTAGACTTT+TGG | - | chr2.4:52004872-52004891 | None:intergenic | 35.0% |
| ! | TTCGTATCGATGTTTGATTG+TGG | + | chr2.4:51999786-51999805 | MS.gene07745:intron | 35.0% |
| !! | AAACTCTGGAGCAAAAACAA+AGG | + | chr2.4:52005394-52005413 | MS.gene07745:CDS | 35.0% |
| !! | AACTCTGGAGCAAAAACAAA+GGG | + | chr2.4:52005395-52005414 | MS.gene07745:CDS | 35.0% |
| !! | TTACGGAATGAAAAGTGTTC+CGG | + | chr2.4:52004842-52004861 | MS.gene07745:intron | 35.0% |
| !!! | GAAAAGTTTTAAGAAGGTCC+AGG | + | chr2.4:52004120-52004139 | MS.gene07745:intron | 35.0% |
| AACACACTAATAAAGCGGAG+TGG | + | chr2.4:52000670-52000689 | MS.gene07745:intron | 40.0% | |
| AAGCACAAAACCACAAATGG+CGG | - | chr2.4:52000039-52000058 | None:intergenic | 40.0% | |
| AAGCCATCTTGAACAAAGAC+TGG | + | chr2.4:52005349-52005368 | MS.gene07745:CDS | 40.0% | |
| AAGGTTACAATAGGAGAAGG+TGG | - | chr2.4:52005531-52005550 | None:intergenic | 40.0% | |
| AAGTCACAACTTCAGTGCTA+TGG | + | chr2.4:52002932-52002951 | MS.gene07745:CDS | 40.0% | |
| AATCAAGTAAAGCGGTACAG+AGG | + | chr2.4:52005111-52005130 | MS.gene07745:intron | 40.0% | |
| AATTCAGGTCAAGGGACTAA+AGG | - | chr2.4:52005044-52005063 | None:intergenic | 40.0% | |
| ACACACTAATAAAGCGGAGT+GGG | + | chr2.4:52000671-52000690 | MS.gene07745:intron | 40.0% | |
| AGCCATCTTGAACAAAGACT+GGG | + | chr2.4:52005350-52005369 | MS.gene07745:CDS | 40.0% | |
| AGGTTACAATAGGAGAAGGT+GGG | - | chr2.4:52005530-52005549 | None:intergenic | 40.0% | |
| AGTCTTTGTTCAAGATGGCT+TGG | - | chr2.4:52005350-52005369 | None:intergenic | 40.0% | |
| ATATACCAAAGTTGCCGGAT+TGG | + | chr2.4:52003331-52003350 | MS.gene07745:intron | 40.0% | |
| ATCATGTAATTGTGCAGTGG+TGG | + | chr2.4:52001785-52001804 | MS.gene07745:intron | 40.0% | |
| ATGCAGTACTGTAACACTGA+AGG | + | chr2.4:52004611-52004630 | MS.gene07745:intron | 40.0% | |
| ATTCAGGTCAAGGGACTAAA+GGG | - | chr2.4:52005043-52005062 | None:intergenic | 40.0% | |
| CAATACAACTGTCATCGATG+TGG | - | chr2.4:52000186-52000205 | None:intergenic | 40.0% | |
| CATATGTCTCTCCATGATTG+AGG | - | chr2.4:52004244-52004263 | None:intergenic | 40.0% | |
| GACTCATATCTGTTGTAGCA+TGG | + | chr2.4:52003023-52003042 | MS.gene07745:CDS | 40.0% | |
| GAGAATCCAAAGGAGAAACT+TGG | + | chr2.4:52005433-52005452 | MS.gene07745:CDS | 40.0% | |
| GAGACTCATCATGTTTCCAA+GGG | + | chr2.4:52003106-52003125 | MS.gene07745:CDS | 40.0% | |
| GAGCATGCAAGACTTGAAAT+CGG | + | chr2.4:52004933-52004952 | MS.gene07745:intron | 40.0% | |
| GCTTAGTAAGTCTGAAGATG+TGG | - | chr2.4:52002972-52002991 | None:intergenic | 40.0% | |
| GTCTGTGCTTCATAGTTTAC+AGG | + | chr2.4:52002816-52002835 | MS.gene07745:intron | 40.0% | |
| GTGAAAAGAAAAAACGAGCG+CGG | + | chr2.4:52001807-52001826 | MS.gene07745:intron | 40.0% | |
| GTGTATAGAAACAGGTCTTG+TGG | + | chr2.4:52004340-52004359 | MS.gene07745:CDS | 40.0% | |
| TAAGGAGCAGCACCAAAAAT+TGG | - | chr2.4:52003070-52003089 | None:intergenic | 40.0% | |
| TATCCTGCTGCAAAGTTCAA+TGG | + | chr2.4:52003852-52003871 | MS.gene07745:CDS | 40.0% | |
| TCAAAGCAAAGAAGGGTCTT+GGG | + | chr2.4:52005479-52005498 | MS.gene07745:CDS | 40.0% | |
| TCACATGTCATACTCTTTGG+CGG | - | chr2.4:52000982-52001001 | None:intergenic | 40.0% | |
| TGAGACTCATCATGTTTCCA+AGG | + | chr2.4:52003105-52003124 | MS.gene07745:CDS | 40.0% | |
| TGATGAGTCTCACCAAGAAT+TGG | - | chr2.4:52003097-52003116 | None:intergenic | 40.0% | |
| TGCATGAAAGGGGAAAACTT+TGG | - | chr2.4:52002382-52002401 | None:intergenic | 40.0% | |
| TGTTACGGTCTGTAAAATCG+AGG | + | chr2.4:52001702-52001721 | MS.gene07745:intron | 40.0% | |
| TTACCATTGAACTTTGCAGC+AGG | - | chr2.4:52003858-52003877 | None:intergenic | 40.0% | |
| TTAGTCCCTTGACCTGAATT+GGG | + | chr2.4:52005044-52005063 | MS.gene07745:intron | 40.0% | |
| TTCCCAGTCTTTGTTCAAGA+TGG | - | chr2.4:52005355-52005374 | None:intergenic | 40.0% | |
| TTTAGTCCCTTGACCTGAAT+TGG | + | chr2.4:52005043-52005062 | MS.gene07745:intron | 40.0% | |
| ! | ACATTGTGTTGTTGGTTGCT+TGG | + | chr2.4:52002880-52002899 | MS.gene07745:intron | 40.0% |
| ! | ATCTGATCTCACACGTTTTC+AGG | + | chr2.4:52001368-52001387 | MS.gene07745:CDS | 40.0% |
| ! | TAGCACTGAAGTTGTGACTT+TGG | - | chr2.4:52002932-52002951 | None:intergenic | 40.0% |
| ! | TCCTGTTACTGGAGTTGATT+GGG | + | chr2.4:52004298-52004317 | MS.gene07745:CDS | 40.0% |
| ! | TTACTGGAGTTGATTGGGTT+GGG | + | chr2.4:52004303-52004322 | MS.gene07745:CDS | 40.0% |
| ! | TTCCTGTTACTGGAGTTGAT+TGG | + | chr2.4:52004297-52004316 | MS.gene07745:CDS | 40.0% |
| !! | ATGCTAGACTTTTGGTGTAC+CGG | - | chr2.4:52004864-52004883 | None:intergenic | 40.0% |
| !! | GGATATTACAACTTTGGAGC+CGG | - | chr2.4:52002251-52002270 | None:intergenic | 40.0% |
| AAACGTGTGAGATCAGATCC+TGG | - | chr2.4:52001366-52001385 | None:intergenic | 45.0% | |
| AAACTGAGGCTCCTCAATCA+TGG | + | chr2.4:52004230-52004249 | MS.gene07745:CDS | 45.0% | |
| AAGTAGGCCTAATCCCACTA+GGG | + | chr2.4:52005010-52005029 | MS.gene07745:intron | 45.0% | |
| ACCCAATCAACTCCAGTAAC+AGG | - | chr2.4:52004302-52004321 | None:intergenic | 45.0% | |
| ACTTGGACTTGCCTAATCTG+AGG | + | chr2.4:52002790-52002809 | MS.gene07745:intron | 45.0% | |
| AGGAACCCAAGTTTCTCCTT+TGG | - | chr2.4:52005442-52005461 | None:intergenic | 45.0% | |
| ATGGATCATCTTACCTGCAG+TGG | - | chr2.4:52002851-52002870 | None:intergenic | 45.0% | |
| CAAGCTATGAAGCACGGATA+CGG | + | chr2.4:52002652-52002671 | MS.gene07745:intron | 45.0% | |
| CACACTAATAAAGCGGAGTG+GGG | + | chr2.4:52000672-52000691 | MS.gene07745:intron | 45.0% | |
| CAGTTAATGGTCACTGGGAT+AGG | + | chr2.4:52004465-52004484 | MS.gene07745:CDS | 45.0% | |
| CGATGTTTGATTGTGGCTAG+TGG | + | chr2.4:51999793-51999812 | MS.gene07745:intron | 45.0% | |
| CGGTACAGAGGACTTGATTT+CGG | + | chr2.4:52005123-52005142 | MS.gene07745:intron | 45.0% | |
| CTCAAAGCAAAGAAGGGTCT+TGG | + | chr2.4:52005478-52005497 | MS.gene07745:CDS | 45.0% | |
| GAAAATATGGTCCAAGTGGC+TGG | + | chr2.4:52001622-52001641 | MS.gene07745:intron | 45.0% | |
| GAGCAGCACCAAAAATTGGA+GGG | - | chr2.4:52003066-52003085 | None:intergenic | 45.0% | |
| GATTAGGCAAGTCCAAGTGT+CGG | - | chr2.4:52002788-52002807 | None:intergenic | 45.0% | |
| GTGACAAGACTCTCTCAACT+TGG | + | chr2.4:52003222-52003241 | MS.gene07745:intron | 45.0% | |
| GTTTCCTTCATCAGAGTGTG+TGG | + | chr2.4:52005289-52005308 | MS.gene07745:intron | 45.0% | |
| TCTCTCAACTTGGCCAACTT+TGG | + | chr2.4:52003232-52003251 | MS.gene07745:intron | 45.0% | |
| TTCTACGCGGTCAATCACAT+TGG | - | chr2.4:52000442-52000461 | None:intergenic | 45.0% | |
| ! | ACTAGTCGAATCGGCTCATT+AGG | + | chr2.4:52003541-52003560 | MS.gene07745:intron | 45.0% |
| ! | CAACTGAATCGGCTCTTATG+TGG | + | chr2.4:52005313-52005332 | MS.gene07745:CDS | 45.0% |
| ! | CACATAAGAGCCGATTCAGT+TGG | - | chr2.4:52005315-52005334 | None:intergenic | 45.0% |
| ! | GTATATGTGTCGATGTCGTG+CGG | + | chr2.4:52002742-52002761 | MS.gene07745:intron | 45.0% |
| ! | GTTACTGGAGTTGATTGGGT+TGG | + | chr2.4:52004302-52004321 | MS.gene07745:CDS | 45.0% |
| ! | GTTGGCCTGACTGATTGAAT+GGG | + | chr2.4:52003353-52003372 | MS.gene07745:intron | 45.0% |
| ! | TCTGGAGCAAAAACAAAGGG+AGG | + | chr2.4:52005398-52005417 | MS.gene07745:CDS | 45.0% |
| !! | CGGACAGTAGCTCTGAAAAT+TGG | + | chr2.4:52004953-52004972 | MS.gene07745:intron | 45.0% |
| !! | GAATGTTAAGTTGGGTTGGC+TGG | - | chr2.4:52003379-52003398 | None:intergenic | 45.0% |
| !! | ATAAAATAAAATAAAAACTT+TGG | - | chr2.4:52002043-52002062 | None:intergenic | 5.0% |
| !!! | CTATTTTTTTTTTTTTTTTT+AGG | - | chr2.4:51999984-52000003 | None:intergenic | 5.0% |
| AAGCTCAGGTGCACGGAAAA+CGG | + | chr2.4:52004207-52004226 | MS.gene07745:CDS | 50.0% | |
| ACAGTCCCCTCTAGGTAGTT+CGG | + | chr2.4:52004076-52004095 | MS.gene07745:intron | 50.0% | |
| ACAGTTTGAAGGCGACTCAG+TGG | - | chr2.4:52004901-52004920 | None:intergenic | 50.0% | |
| ACCAAAACGTGTCCGACACT+TGG | + | chr2.4:52002773-52002792 | MS.gene07745:intron | 50.0% | |
| ACCAACCGAACTACCTAGAG+GGG | - | chr2.4:52004084-52004103 | None:intergenic | 50.0% | |
| ACCTCTGCATCCTTGACAGT+AGG | - | chr2.4:52004702-52004721 | None:intergenic | 50.0% | |
| ACTGAGTCGCCTTCAAACTG+TGG | + | chr2.4:52004900-52004919 | MS.gene07745:intron | 50.0% | |
| AGGTACTTCAGTGGAAGCTC+AGG | + | chr2.4:52004193-52004212 | MS.gene07745:intron | 50.0% | |
| ATCAGTCAGGCCAACCAATC+CGG | - | chr2.4:52003348-52003367 | None:intergenic | 50.0% | |
| CACCAACCGAACTACCTAGA+GGG | - | chr2.4:52004085-52004104 | None:intergenic | 50.0% | |
| CAGTTTGAAGGCGACTCAGT+GGG | - | chr2.4:52004900-52004919 | None:intergenic | 50.0% | |
| CATCCTTGACAGTAGGAGCT+TGG | - | chr2.4:52004695-52004714 | None:intergenic | 50.0% | |
| CATCGTGTATCCGCCATTTG+TGG | + | chr2.4:52000026-52000045 | MS.gene07745:intron | 50.0% | |
| CATGAAGGGCAGATACAGCA+GGG | - | chr2.4:52003791-52003810 | None:intergenic | 50.0% | |
| CCTTCATGCAACTGACGAGA+CGG | + | chr2.4:52003803-52003822 | MS.gene07745:CDS | 50.0% | |
| CGTCTCGTCAGTTGCATGAA+GGG | - | chr2.4:52003805-52003824 | None:intergenic | 50.0% | |
| CTTCTTAAGAATGTGCGGCC+AGG | + | chr2.4:52001345-52001364 | MS.gene07745:CDS | 50.0% | |
| GAAGTAGGCCTAATCCCACT+AGG | + | chr2.4:52005009-52005028 | MS.gene07745:intron | 50.0% | |
| GAGTGTGTGGCCAACTGAAT+CGG | + | chr2.4:52005302-52005321 | MS.gene07745:intron | 50.0% | |
| GCACAGACACTCCTCAGATT+AGG | - | chr2.4:52002804-52002823 | None:intergenic | 50.0% | |
| GGAGCAGCACCAAAAATTGG+AGG | - | chr2.4:52003067-52003086 | None:intergenic | 50.0% | |
| GGGTTGGGAATGTCAACATC+AGG | + | chr2.4:52004318-52004337 | MS.gene07745:CDS | 50.0% | |
| GGTCAATACTACCAGCCACT+TGG | - | chr2.4:52001636-52001655 | None:intergenic | 50.0% | |
| TACGCGGTCAATCACATTGG+TGG | - | chr2.4:52000439-52000458 | None:intergenic | 50.0% | |
| TAGGTACTACAGTCCCCTCT+AGG | + | chr2.4:52004068-52004087 | MS.gene07745:intron | 50.0% | |
| TCACCAACCGAACTACCTAG+AGG | - | chr2.4:52004086-52004105 | None:intergenic | 50.0% | |
| TCCTACTGTCAAGGATGCAG+AGG | + | chr2.4:52004698-52004717 | MS.gene07745:CDS | 50.0% | |
| TGCACGGAAAACGGAAACTG+AGG | + | chr2.4:52004216-52004235 | MS.gene07745:CDS | 50.0% | |
| TGTTCCCTCACACTTCTACG+CGG | - | chr2.4:52000455-52000474 | None:intergenic | 50.0% | |
| TTGGCCACACACTCTGATGA+AGG | - | chr2.4:52005296-52005315 | None:intergenic | 50.0% | |
| ! | ACCAAAAATTGGAGGGCGTG+TGG | - | chr2.4:52003059-52003078 | None:intergenic | 50.0% |
| ! | ACCACACGCCCTCCAATTTT+TGG | + | chr2.4:52003055-52003074 | MS.gene07745:CDS | 50.0% |
| ! | ATTGACCGCGTAGAAGTGTG+AGG | + | chr2.4:52000447-52000466 | MS.gene07745:intron | 50.0% |
| ! | CAGGAGATTGATTCCACTGC+AGG | + | chr2.4:52002835-52002854 | MS.gene07745:intron | 50.0% |
| ! | GTTGGTGAGCTAAGGAACAC+AGG | + | chr2.4:52004098-52004117 | MS.gene07745:intron | 50.0% |
| ! | TCGAATCGGCTCATTAGGCT+AGG | + | chr2.4:52003546-52003565 | MS.gene07745:intron | 50.0% |
| ! | TTGACCGCGTAGAAGTGTGA+GGG | + | chr2.4:52000448-52000467 | MS.gene07745:intron | 50.0% |
| !! | AAAAGTACCCCGCCCAATTC+AGG | - | chr2.4:52005059-52005078 | None:intergenic | 50.0% |
| !! | AATTGGGCGGGGTACTTTTC+CGG | + | chr2.4:52005060-52005079 | MS.gene07745:intron | 50.0% |
| !! | ACCAAAGTTGCCGGATTGGT+TGG | + | chr2.4:52003335-52003354 | MS.gene07745:intron | 50.0% |
| !! | GGTGGGACCCACTTTTGAAT+AGG | - | chr2.4:52005513-52005532 | None:intergenic | 50.0% |
| !! | GGTTGGCCTGACTGATTGAA+TGG | + | chr2.4:52003352-52003371 | MS.gene07745:intron | 50.0% |
| !! | GTAGTTCGGTTGGTGAGCTA+AGG | + | chr2.4:52004090-52004109 | MS.gene07745:intron | 50.0% |
| !!! | TCCAAGTGTCGGACACGTTT+TGG | - | chr2.4:52002777-52002796 | None:intergenic | 50.0% |
| AACAGGTAAGCCGGTCCGAT+TGG | - | chr2.4:52003489-52003508 | None:intergenic | 55.0% | |
| CAACTGTCATCGATGTGGCG+TGG | - | chr2.4:52000181-52000200 | None:intergenic | 55.0% | |
| CCGTCTCGTCAGTTGCATGA+AGG | - | chr2.4:52003806-52003825 | None:intergenic | 55.0% | |
| GCATGAAGGGCAGATACAGC+AGG | - | chr2.4:52003792-52003811 | None:intergenic | 55.0% | |
| GCCAACCAATCCGGCAACTT+TGG | - | chr2.4:52003339-52003358 | None:intergenic | 55.0% | |
| GCTCCAAGCTCCTACTGTCA+AGG | + | chr2.4:52004689-52004708 | MS.gene07745:CDS | 55.0% | |
| GCTGGCCCATTCAATCAGTC+AGG | - | chr2.4:52003361-52003380 | None:intergenic | 55.0% | |
| GTCCCTTGACCTGAATTGGG+CGG | + | chr2.4:52005047-52005066 | MS.gene07745:intron | 55.0% | |
| TCAGTGGAAGCTCAGGTGCA+CGG | + | chr2.4:52004200-52004219 | MS.gene07745:CDS | 55.0% | |
| TCCCCTCTAGGTAGTTCGGT+TGG | + | chr2.4:52004080-52004099 | MS.gene07745:intron | 55.0% | |
| TCCCTTGACCTGAATTGGGC+GGG | + | chr2.4:52005048-52005067 | MS.gene07745:intron | 55.0% | |
| ! | GTGTCGATGTCGTGCGGTAT+CGG | + | chr2.4:52002748-52002767 | MS.gene07745:intron | 55.0% |
| !! | TACAACTTTGGAGCCGGTCG+AGG | - | chr2.4:52002245-52002264 | None:intergenic | 55.0% |
| AAAGGGCCAGCAGCCCTAGT+GGG | - | chr2.4:52005026-52005045 | None:intergenic | 60.0% | |
| ACCCCGCCCAATTCAGGTCA+AGG | - | chr2.4:52005053-52005072 | None:intergenic | 60.0% | |
| CCAGCAGCCCTAGTGGGATT+AGG | - | chr2.4:52005020-52005039 | None:intergenic | 60.0% | |
| CCCCGCCCAATTCAGGTCAA+GGG | - | chr2.4:52005052-52005071 | None:intergenic | 60.0% | |
| CCCTTGACCTGAATTGGGCG+GGG | + | chr2.4:52005049-52005068 | MS.gene07745:intron | 60.0% | |
| CCTAATCCCACTAGGGCTGC+TGG | + | chr2.4:52005017-52005036 | MS.gene07745:intron | 60.0% | |
| GAAGGGCAGATACAGCAGGG+TGG | - | chr2.4:52003788-52003807 | None:intergenic | 60.0% | |
| TAAAGGGCCAGCAGCCCTAG+TGG | - | chr2.4:52005027-52005046 | None:intergenic | 60.0% | |
| TCACAGTGGTCCTCCTCGAC+CGG | + | chr2.4:52002229-52002248 | MS.gene07745:intron | 60.0% | |
| !! | AACTTTGGAGCCGGTCGAGG+AGG | - | chr2.4:52002242-52002261 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 51999634 | 52005554 | 51999634 | ID=MS.gene07745 |
| chr2.4 | mRNA | 51999634 | 52005554 | 51999634 | ID=MS.gene07745.t1;Parent=MS.gene07745 |
| chr2.4 | exon | 51999634 | 51999636 | 51999634 | ID=MS.gene07745.t1.exon1;Parent=MS.gene07745.t1 |
| chr2.4 | CDS | 51999634 | 51999636 | 51999634 | ID=cds.MS.gene07745.t1;Parent=MS.gene07745.t1 |
| chr2.4 | exon | 52001234 | 52001389 | 52001234 | ID=MS.gene07745.t1.exon2;Parent=MS.gene07745.t1 |
| chr2.4 | CDS | 52001234 | 52001389 | 52001234 | ID=cds.MS.gene07745.t1;Parent=MS.gene07745.t1 |
| chr2.4 | exon | 52002908 | 52003153 | 52002908 | ID=MS.gene07745.t1.exon3;Parent=MS.gene07745.t1 |
| chr2.4 | CDS | 52002908 | 52003153 | 52002908 | ID=cds.MS.gene07745.t1;Parent=MS.gene07745.t1 |
| chr2.4 | exon | 52003777 | 52003873 | 52003777 | ID=MS.gene07745.t1.exon4;Parent=MS.gene07745.t1 |
| chr2.4 | CDS | 52003777 | 52003873 | 52003777 | ID=cds.MS.gene07745.t1;Parent=MS.gene07745.t1 |
| chr2.4 | exon | 52004195 | 52004486 | 52004195 | ID=MS.gene07745.t1.exon5;Parent=MS.gene07745.t1 |
| chr2.4 | CDS | 52004195 | 52004486 | 52004195 | ID=cds.MS.gene07745.t1;Parent=MS.gene07745.t1 |
| chr2.4 | exon | 52004617 | 52004719 | 52004617 | ID=MS.gene07745.t1.exon6;Parent=MS.gene07745.t1 |
| chr2.4 | CDS | 52004617 | 52004719 | 52004617 | ID=cds.MS.gene07745.t1;Parent=MS.gene07745.t1 |
| chr2.4 | exon | 52005303 | 52005554 | 52005303 | ID=MS.gene07745.t1.exon7;Parent=MS.gene07745.t1 |
| chr2.4 | CDS | 52005303 | 52005554 | 52005303 | ID=cds.MS.gene07745.t1;Parent=MS.gene07745.t1 |
| Gene Sequence |
| Protein sequence |
