Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07783.t1 | XP_003627109.1 | 89.7 | 359 | 27 | 3 | 1 | 356 | 1 | 352 | 8.60E-168 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07783.t1 | Q8H1F5 | 79.9 | 214 | 40 | 3 | 18 | 229 | 21 | 233 | 2.9e-95 | 350.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07783.t1 | G7LHG9 | 89.7 | 359 | 27 | 3 | 1 | 356 | 1 | 352 | 6.2e-168 | 599.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene07783.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052723 | MS.gene07783 | 0.958843 | 8.60E-117 | -1.69E-46 |
| MS.gene052725 | MS.gene07783 | 0.945999 | 1.06E-104 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07783.t1 | MTR_8g017210 | 91.643 | 359 | 20 | 3 | 1 | 356 | 1 | 352 | 0.0 | 637 |
| MS.gene07783.t1 | MTR_2g099990 | 65.527 | 351 | 73 | 13 | 18 | 353 | 1 | 318 | 6.88e-144 | 416 |
| MS.gene07783.t1 | MTR_2g099990 | 66.547 | 278 | 56 | 9 | 84 | 353 | 1 | 249 | 1.96e-118 | 348 |
| MS.gene07783.t1 | MTR_1g016010 | 56.303 | 357 | 87 | 10 | 1 | 353 | 1 | 292 | 2.16e-117 | 347 |
| MS.gene07783.t1 | MTR_4g059870 | 61.972 | 284 | 92 | 6 | 29 | 311 | 8 | 276 | 6.62e-112 | 335 |
| MS.gene07783.t1 | MTR_1g094115 | 88.415 | 164 | 19 | 0 | 58 | 221 | 45 | 208 | 9.54e-112 | 336 |
| MS.gene07783.t1 | MTR_1g112270 | 87.500 | 160 | 20 | 0 | 63 | 222 | 47 | 206 | 1.32e-108 | 329 |
| MS.gene07783.t1 | MTR_2g093960 | 68.981 | 216 | 56 | 4 | 59 | 265 | 31 | 244 | 2.86e-106 | 318 |
| MS.gene07783.t1 | MTR_1g112270 | 82.738 | 168 | 29 | 0 | 55 | 222 | 50 | 217 | 6.10e-105 | 320 |
| MS.gene07783.t1 | MTR_2g090745 | 86.928 | 153 | 20 | 0 | 70 | 222 | 17 | 169 | 4.09e-101 | 305 |
| MS.gene07783.t1 | MTR_1g094115 | 79.878 | 164 | 16 | 1 | 58 | 221 | 45 | 191 | 8.49e-96 | 295 |
| MS.gene07783.t1 | MTR_2g017720 | 76.667 | 120 | 23 | 1 | 65 | 184 | 318 | 432 | 7.23e-58 | 194 |
| MS.gene07783.t1 | MTR_3g102000 | 71.717 | 99 | 21 | 2 | 87 | 181 | 36 | 131 | 7.96e-42 | 146 |
| MS.gene07783.t1 | MTR_1g093095 | 33.333 | 156 | 89 | 6 | 83 | 225 | 109 | 262 | 3.76e-20 | 89.7 |
| MS.gene07783.t1 | MTR_5g030560 | 72.000 | 50 | 14 | 0 | 65 | 114 | 11 | 60 | 4.73e-20 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07783.t1 | AT1G55110 | 79.817 | 218 | 41 | 3 | 14 | 229 | 17 | 233 | 6.74e-125 | 367 |
| MS.gene07783.t1 | AT1G55110 | 79.817 | 218 | 41 | 3 | 14 | 229 | 17 | 233 | 6.74e-125 | 367 |
| MS.gene07783.t1 | AT1G55110 | 79.817 | 218 | 41 | 3 | 14 | 229 | 17 | 233 | 6.74e-125 | 367 |
| MS.gene07783.t1 | AT3G13810 | 60.692 | 318 | 80 | 7 | 15 | 287 | 17 | 334 | 2.24e-121 | 360 |
| MS.gene07783.t1 | AT3G13810 | 60.692 | 318 | 80 | 7 | 15 | 287 | 17 | 334 | 2.24e-121 | 360 |
| MS.gene07783.t1 | AT3G13810 | 60.692 | 318 | 80 | 7 | 15 | 287 | 12 | 329 | 2.63e-121 | 359 |
| MS.gene07783.t1 | AT3G13810 | 60.635 | 315 | 79 | 7 | 18 | 287 | 1 | 315 | 1.26e-119 | 355 |
| MS.gene07783.t1 | AT5G66730 | 75.362 | 207 | 34 | 2 | 17 | 222 | 4 | 194 | 1.51e-113 | 339 |
| MS.gene07783.t1 | AT3G50700 | 72.857 | 210 | 38 | 2 | 17 | 223 | 4 | 197 | 3.71e-113 | 337 |
| MS.gene07783.t1 | AT1G03840 | 78.173 | 197 | 38 | 2 | 52 | 248 | 35 | 226 | 4.21e-113 | 338 |
| MS.gene07783.t1 | AT5G44160 | 62.835 | 261 | 90 | 3 | 29 | 286 | 8 | 264 | 7.30e-111 | 331 |
| MS.gene07783.t1 | AT3G45260 | 81.768 | 181 | 24 | 2 | 60 | 231 | 39 | 219 | 5.45e-110 | 328 |
| MS.gene07783.t1 | AT3G45260 | 81.768 | 181 | 24 | 2 | 60 | 231 | 39 | 219 | 5.45e-110 | 328 |
| MS.gene07783.t1 | AT1G14580 | 72.277 | 202 | 52 | 1 | 21 | 222 | 18 | 215 | 7.99e-110 | 329 |
| MS.gene07783.t1 | AT1G14580 | 72.277 | 202 | 52 | 1 | 21 | 222 | 18 | 215 | 7.99e-110 | 329 |
| MS.gene07783.t1 | AT1G14580 | 72.277 | 202 | 52 | 1 | 21 | 222 | 32 | 229 | 1.67e-109 | 328 |
| MS.gene07783.t1 | AT1G03840 | 77.157 | 197 | 38 | 3 | 52 | 248 | 35 | 224 | 2.47e-109 | 329 |
| MS.gene07783.t1 | AT2G02080 | 83.030 | 165 | 28 | 0 | 58 | 222 | 52 | 216 | 3.26e-109 | 329 |
| MS.gene07783.t1 | AT2G02080 | 83.030 | 165 | 28 | 0 | 58 | 222 | 52 | 216 | 3.26e-109 | 329 |
| MS.gene07783.t1 | AT2G02080 | 83.030 | 165 | 28 | 0 | 58 | 222 | 52 | 216 | 3.26e-109 | 329 |
| MS.gene07783.t1 | AT2G02080 | 83.030 | 165 | 28 | 0 | 58 | 222 | 52 | 216 | 3.26e-109 | 329 |
| MS.gene07783.t1 | AT4G02670 | 77.000 | 200 | 42 | 3 | 27 | 222 | 19 | 218 | 2.39e-108 | 323 |
| MS.gene07783.t1 | AT4G02670 | 77.000 | 200 | 42 | 3 | 27 | 222 | 17 | 216 | 2.47e-108 | 323 |
| MS.gene07783.t1 | AT3G13810 | 56.481 | 324 | 90 | 7 | 15 | 287 | 12 | 335 | 2.18e-107 | 324 |
| MS.gene07783.t1 | AT2G02070 | 79.888 | 179 | 34 | 1 | 60 | 238 | 52 | 228 | 1.00e-106 | 325 |
| MS.gene07783.t1 | AT2G02070 | 79.888 | 179 | 34 | 1 | 60 | 238 | 52 | 228 | 1.00e-106 | 325 |
| MS.gene07783.t1 | AT5G03150 | 74.129 | 201 | 40 | 3 | 60 | 257 | 53 | 244 | 1.24e-106 | 322 |
| MS.gene07783.t1 | AT3G13810 | 56.386 | 321 | 89 | 7 | 18 | 287 | 1 | 321 | 1.45e-105 | 319 |
| MS.gene07783.t1 | AT5G60470 | 78.947 | 171 | 35 | 1 | 56 | 225 | 36 | 206 | 1.59e-103 | 312 |
| MS.gene07783.t1 | AT5G60470 | 78.947 | 171 | 35 | 1 | 56 | 225 | 40 | 210 | 1.64e-103 | 312 |
| MS.gene07783.t1 | AT5G44160 | 66.364 | 220 | 69 | 2 | 70 | 286 | 8 | 225 | 1.05e-101 | 306 |
| MS.gene07783.t1 | AT5G60470 | 73.988 | 173 | 43 | 2 | 52 | 222 | 26 | 198 | 5.04e-95 | 290 |
| MS.gene07783.t1 | AT2G02080 | 84.892 | 139 | 21 | 0 | 84 | 222 | 1 | 139 | 1.12e-93 | 286 |
| MS.gene07783.t1 | AT2G02080 | 84.892 | 139 | 21 | 0 | 84 | 222 | 1 | 139 | 1.12e-93 | 286 |
| MS.gene07783.t1 | AT1G25250 | 65.605 | 157 | 51 | 2 | 60 | 213 | 33 | 189 | 6.61e-75 | 236 |
| MS.gene07783.t1 | AT1G68130 | 65.385 | 156 | 52 | 2 | 60 | 213 | 41 | 196 | 2.22e-74 | 236 |
| MS.gene07783.t1 | AT2G01940 | 64.198 | 162 | 56 | 2 | 56 | 215 | 40 | 201 | 2.32e-74 | 237 |
| MS.gene07783.t1 | AT1G25250 | 62.577 | 163 | 56 | 3 | 56 | 213 | 4 | 166 | 2.54e-72 | 229 |
| MS.gene07783.t1 | AT2G01940 | 63.190 | 163 | 57 | 3 | 56 | 215 | 40 | 202 | 8.39e-71 | 228 |
| MS.gene07783.t1 | AT1G68130 | 66.364 | 110 | 35 | 2 | 106 | 213 | 1 | 110 | 7.20e-48 | 165 |
| MS.gene07783.t1 | AT1G25250 | 65.766 | 111 | 35 | 2 | 106 | 213 | 1 | 111 | 1.51e-47 | 163 |
| MS.gene07783.t1 | AT2G01940 | 64.286 | 112 | 38 | 2 | 106 | 215 | 1 | 112 | 1.27e-46 | 162 |
| MS.gene07783.t1 | AT1G34370 | 33.544 | 158 | 91 | 3 | 69 | 212 | 14 | 171 | 5.11e-24 | 100 |
| MS.gene07783.t1 | AT1G34370 | 33.544 | 158 | 91 | 3 | 69 | 212 | 224 | 381 | 1.17e-23 | 102 |
| MS.gene07783.t1 | AT1G34370 | 33.544 | 158 | 91 | 3 | 69 | 212 | 224 | 381 | 1.17e-23 | 102 |
| MS.gene07783.t1 | AT5G22890 | 32.530 | 166 | 96 | 4 | 61 | 212 | 191 | 354 | 1.89e-23 | 100 |
| MS.gene07783.t1 | AT1G13290 | 34.000 | 150 | 87 | 5 | 83 | 221 | 95 | 243 | 1.24e-19 | 88.6 |
| MS.gene07783.t1 | AT1G08290 | 28.194 | 227 | 139 | 8 | 9 | 212 | 87 | 312 | 2.62e-19 | 88.2 |
| MS.gene07783.t1 | AT3G20880 | 33.813 | 139 | 82 | 4 | 83 | 212 | 250 | 387 | 2.95e-18 | 85.9 |
| MS.gene07783.t1 | AT1G51220 | 33.094 | 139 | 83 | 4 | 83 | 212 | 172 | 309 | 2.95e-18 | 85.1 |
| MS.gene07783.t1 | AT3G57670 | 33.571 | 140 | 81 | 5 | 83 | 212 | 211 | 348 | 8.32e-18 | 84.3 |
| MS.gene07783.t1 | AT1G34790 | 33.557 | 149 | 89 | 4 | 73 | 212 | 129 | 276 | 5.27e-17 | 80.9 |
Find 61 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCTCACCATGCTTTC+TGG | 0.052883 | 8.1:-80648031 | None:intergenic |
| TTCTCTAGTGCCACATGTTT+TGG | 0.232714 | 8.1:-80648112 | None:intergenic |
| TGTAATCATAAGATGGTAAA+AGG | 0.239938 | 8.1:+80647458 | None:intergenic |
| CCTAGTCTTGTTCATGTTCC+TGG | 0.244428 | 8.1:+80649147 | MS.gene07783:CDS |
| TCTGGTAACAGAACTGAAAT+TGG | 0.252456 | 8.1:+80647563 | MS.gene07783:CDS |
| CTTGTTGAGGATTATTGAAT+TGG | 0.313076 | 8.1:-80648948 | None:intergenic |
| CATGATCCATCAAGAGCATT+AGG | 0.324615 | 8.1:+80647979 | MS.gene07783:CDS |
| TGTTGTTGTGAGGGTAAAAT+TGG | 0.350354 | 8.1:-80648880 | None:intergenic |
| ATGATCCATCAAGAGCATTA+GGG | 0.372273 | 8.1:+80647980 | MS.gene07783:CDS |
| ATAGCTATAACCTCAGCATC+AGG | 0.391905 | 8.1:-80647772 | None:intergenic |
| CTTCCACTACTTGTTGCTGT+TGG | 0.402652 | 8.1:-80647493 | None:intergenic |
| GGTGAAGCTAGTGTTTCTTC+TGG | 0.407702 | 8.1:+80647545 | MS.gene07783:CDS |
| AAATCCCCTAATGCTCTTGA+TGG | 0.408372 | 8.1:-80647985 | None:intergenic |
| TCTGAAATTCCACCTTGGCT+TGG | 0.415974 | 8.1:+80649027 | MS.gene07783:CDS |
| TGATGCACACAAGTTGGTTC+TGG | 0.417382 | 8.1:-80647958 | None:intergenic |
| AATATGCTGTTCAATCTGAT+TGG | 0.427517 | 8.1:+80648079 | MS.gene07783:CDS |
| ACATGAACAAGACTAGGGTT+AGG | 0.441835 | 8.1:-80649141 | None:intergenic |
| ATTTGTGAGATCTGCAACAA+AGG | 0.447156 | 8.1:+80647829 | MS.gene07783:CDS |
| GAAAACAAACCTGGGTTACC+AGG | 0.450492 | 8.1:-80647665 | None:intergenic |
| TTTGCTGAAAGCAGCTCAAA+TGG | 0.460080 | 8.1:+80649228 | MS.gene07783:CDS |
| TCAAACTTAACTTCTGCATC+TGG | 0.461869 | 8.1:+80647524 | MS.gene07783:CDS |
| TCAAGTTCAACAACAATACT+TGG | 0.481347 | 8.1:+80647604 | MS.gene07783:CDS |
| CCAGGAACATGAACAAGACT+AGG | 0.482912 | 8.1:-80649147 | None:intergenic |
| GTTCTTTGCTTCAACTTCCA+TGG | 0.484808 | 8.1:-80647901 | None:intergenic |
| CATGAACAAGACTAGGGTTA+GGG | 0.500721 | 8.1:-80649140 | None:intergenic |
| AGTATTGTTGTTGAACTTGA+GGG | 0.512238 | 8.1:-80647601 | None:intergenic |
| ATTTAGTTACCTTGAGAAGA+GGG | 0.520888 | 8.1:-80648154 | None:intergenic |
| GAGAGATGATCAACATTATG+TGG | 0.524492 | 8.1:-80649051 | None:intergenic |
| GAAAGCATGGTGAGAAGAAG+TGG | 0.533075 | 8.1:+80648034 | MS.gene07783:CDS |
| TGTGTGCTGAAGGTGCTGTT+TGG | 0.537428 | 8.1:-80649188 | None:intergenic |
| AAGTATTGTTGTTGAACTTG+AGG | 0.537745 | 8.1:-80647602 | None:intergenic |
| GAAGGTGCTGTTTGGTAAGA+AGG | 0.550233 | 8.1:-80649180 | None:intergenic |
| AGAGCATTAGGGGATTTGAC+TGG | 0.562614 | 8.1:+80647991 | MS.gene07783:CDS |
| ACATTATGTGGGCCAAGCCA+AGG | 0.564626 | 8.1:-80649039 | None:intergenic |
| ACCTTTCTGAAATTCCACCT+TGG | 0.568922 | 8.1:+80649022 | MS.gene07783:CDS |
| GCCAAGGTGGAATTTCAGAA+AGG | 0.572630 | 8.1:-80649023 | None:intergenic |
| GTTCCAACAGCAACAAGTAG+TGG | 0.573848 | 8.1:+80647490 | MS.gene07783:CDS |
| GATGAAGGTTGTTGTTGTGA+GGG | 0.574323 | 8.1:-80648889 | None:intergenic |
| AATCTTCAACTTCACAGAAG+AGG | 0.577210 | 8.1:+80647868 | MS.gene07783:CDS |
| AATTTAGTTACCTTGAGAAG+AGG | 0.584975 | 8.1:-80648155 | None:intergenic |
| TAAGAAGGAAGTGTGGGACC+AGG | 0.585129 | 8.1:-80649165 | None:intergenic |
| AGAAACCTCCCTGGTAACCC+AGG | 0.588025 | 8.1:+80647656 | MS.gene07783:CDS |
| AAATTATGAAGATCTTGTTG+AGG | 0.598408 | 8.1:-80648961 | None:intergenic |
| TGATGAAGGTTGTTGTTGTG+AGG | 0.603801 | 8.1:-80648890 | None:intergenic |
| TTGCTGAAAGCAGCTCAAAT+GGG | 0.604636 | 8.1:+80649229 | MS.gene07783:CDS |
| TGATGAGAAGATGATGATGA+AGG | 0.612181 | 8.1:-80648904 | None:intergenic |
| GTAGCTGACATGTGTGCTGA+AGG | 0.614431 | 8.1:-80649198 | None:intergenic |
| TGATCCATCAAGAGCATTAG+GGG | 0.622634 | 8.1:+80647981 | MS.gene07783:CDS |
| CAGGAACATGAACAAGACTA+GGG | 0.634110 | 8.1:-80649146 | None:intergenic |
| ACTGTGGAACCCTCTTCTCA+AGG | 0.634375 | 8.1:+80648145 | MS.gene07783:CDS |
| GAAGAGGTCATAATTTACCA+TGG | 0.635939 | 8.1:+80647884 | MS.gene07783:CDS |
| TAGCTATAACCTCAGCATCA+GGG | 0.639613 | 8.1:-80647771 | None:intergenic |
| AGAGATGATCAACATTATGT+GGG | 0.641603 | 8.1:-80649050 | None:intergenic |
| GGATCATGATGCACACAAGT+TGG | 0.642093 | 8.1:-80647964 | None:intergenic |
| AAAACAAACCTGGGTTACCA+GGG | 0.660704 | 8.1:-80647664 | None:intergenic |
| ACAAACCTGGGTTACCAGGG+AGG | 0.662065 | 8.1:-80647661 | None:intergenic |
| GTTTGGTAAGAAGGAAGTGT+GGG | 0.674496 | 8.1:-80649171 | None:intergenic |
| AAAGCTCATTCCAAAACATG+TGG | 0.678165 | 8.1:+80648102 | MS.gene07783:CDS |
| TGTTTGGTAAGAAGGAAGTG+TGG | 0.686026 | 8.1:-80649172 | None:intergenic |
| TTATGTGGGCCAAGCCAAGG+TGG | 0.692215 | 8.1:-80649036 | None:intergenic |
| AGAGAATATAGATGTGACTG+TGG | 0.703138 | 8.1:+80648129 | MS.gene07783:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATATTATACATCTTC+CGG | + | chr8.1:80648301-80648320 | MS.gene07783:intron | 15.0% |
| !! | TTAATTTCATTCATTTATGA+AGG | + | chr8.1:80648223-80648242 | MS.gene07783:intron | 15.0% |
| !! | TTGATAAACATGTTATTAAT+GGG | + | chr8.1:80647713-80647732 | MS.gene07783:intron | 15.0% |
| !! | TTTGATAAACATGTTATTAA+TGG | + | chr8.1:80647712-80647731 | MS.gene07783:intron | 15.0% |
| !! | AACAAAACAAAACAAAAAGA+AGG | - | chr8.1:80647693-80647712 | None:intergenic | 20.0% |
| !! | AAGACAAATAGTCTATTATT+AGG | - | chr8.1:80648614-80648633 | None:intergenic | 20.0% |
| !! | CATTAAAAAATTTCCTTACT+AGG | - | chr8.1:80648586-80648605 | None:intergenic | 20.0% |
| !!! | TTAATGGGTTTTTTTTTGTT+TGG | + | chr8.1:80647728-80647747 | MS.gene07783:intron | 20.0% |
| ! | AAAAAGTAAAGAGAGAGAAA+AGG | + | chr8.1:80648667-80648686 | MS.gene07783:intron | 25.0% |
| ! | AAATTATGAAGATCTTGTTG+AGG | - | chr8.1:80648964-80648983 | None:intergenic | 25.0% |
| ! | AGAATGGAATTAGTGATTAT+GGG | - | chr8.1:80648545-80648564 | None:intergenic | 25.0% |
| ! | ATTTCATTCATTTATGAAGG+TGG | + | chr8.1:80648226-80648245 | MS.gene07783:intron | 25.0% |
| !!! | AGGTTTCTCTTTTTTTTCAT+TGG | - | chr8.1:80647644-80647663 | None:intergenic | 25.0% |
| !!! | GTTGCTCTTTTTTCAATAAT+GGG | - | chr8.1:80648987-80649006 | None:intergenic | 25.0% |
| !!! | TGTTGCTCTTTTTTCAATAA+TGG | - | chr8.1:80648988-80649007 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTAGTAAACTCTT+TGG | - | chr8.1:80647802-80647821 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCATTGGTTGAGT+TGG | - | chr8.1:80647635-80647654 | None:intergenic | 25.0% |
| AAAAGTGGAAATTCCTAGTA+AGG | + | chr8.1:80648570-80648589 | MS.gene07783:intron | 30.0% | |
| AATATGCTGTTCAATCTGAT+TGG | + | chr8.1:80648079-80648098 | MS.gene07783:CDS | 30.0% | |
| AATTTAGTTACCTTGAGAAG+AGG | - | chr8.1:80648158-80648177 | None:intergenic | 30.0% | |
| ACACACTTGATTTCTTACAT+TGG | + | chr8.1:80648485-80648504 | MS.gene07783:intron | 30.0% | |
| AGAGATGATCAACATTATGT+GGG | - | chr8.1:80649053-80649072 | None:intergenic | 30.0% | |
| AGAGTTTACTAGCAAAAAAC+AGG | + | chr8.1:80647803-80647822 | MS.gene07783:CDS | 30.0% | |
| ATTTAGTTACCTTGAGAAGA+GGG | - | chr8.1:80648157-80648176 | None:intergenic | 30.0% | |
| CAGAATGGAATTAGTGATTA+TGG | - | chr8.1:80648546-80648565 | None:intergenic | 30.0% | |
| CTTGTTGAGGATTATTGAAT+TGG | - | chr8.1:80648951-80648970 | None:intergenic | 30.0% | |
| TAATCACTAATTCCATTCTG+TGG | + | chr8.1:80648546-80648565 | MS.gene07783:intron | 30.0% | |
| TCAAGTTCAACAACAATACT+TGG | + | chr8.1:80647604-80647623 | MS.gene07783:CDS | 30.0% | |
| TGCTTATAATAGTGATCAGA+GGG | + | chr8.1:80648437-80648456 | MS.gene07783:intron | 30.0% | |
| TTGCTTATAATAGTGATCAG+AGG | + | chr8.1:80648436-80648455 | MS.gene07783:intron | 30.0% | |
| ! | AAGTATTGTTGTTGAACTTG+AGG | - | chr8.1:80647605-80647624 | None:intergenic | 30.0% |
| ! | AGTATTGTTGTTGAACTTGA+GGG | - | chr8.1:80647604-80647623 | None:intergenic | 30.0% |
| ! | TTATGATGAGTTTTGCAGAA+GGG | + | chr8.1:80648780-80648799 | MS.gene07783:intron | 30.0% |
| ! | TTTATGATGAGTTTTGCAGA+AGG | + | chr8.1:80648779-80648798 | MS.gene07783:intron | 30.0% |
| ! | TTTTGCTTATAACAGTGAAC+CGG | - | chr8.1:80648323-80648342 | None:intergenic | 30.0% |
| !!! | TAGGTTTTGAATTGTATCCT+AGG | + | chr8.1:80648252-80648271 | MS.gene07783:intron | 30.0% |
| AAAAAAAAGAGAAACCTCCC+TGG | + | chr8.1:80647647-80647666 | MS.gene07783:CDS | 35.0% | |
| AAAGCTCATTCCAAAACATG+TGG | + | chr8.1:80648102-80648121 | MS.gene07783:CDS | 35.0% | |
| AAGAAGGTTGAAAACAAACC+TGG | - | chr8.1:80647677-80647696 | None:intergenic | 35.0% | |
| AAGTAAAGAGAGAGAAAAGG+AGG | + | chr8.1:80648670-80648689 | MS.gene07783:intron | 35.0% | |
| AATCTTCAACTTCACAGAAG+AGG | + | chr8.1:80647868-80647887 | MS.gene07783:CDS | 35.0% | |
| AGAAGGTTGAAAACAAACCT+GGG | - | chr8.1:80647676-80647695 | None:intergenic | 35.0% | |
| AGAGAATATAGATGTGACTG+TGG | + | chr8.1:80648129-80648148 | MS.gene07783:CDS | 35.0% | |
| AGTAAAGAGAGAGAAAAGGA+GGG | + | chr8.1:80648671-80648690 | MS.gene07783:intron | 35.0% | |
| ATTCCATTCTGTGGAAAAAG+TGG | + | chr8.1:80648555-80648574 | MS.gene07783:intron | 35.0% | |
| ATTTGTGAGATCTGCAACAA+AGG | + | chr8.1:80647829-80647848 | MS.gene07783:CDS | 35.0% | |
| GAAGAGGTCATAATTTACCA+TGG | + | chr8.1:80647884-80647903 | MS.gene07783:CDS | 35.0% | |
| GAGAGATGATCAACATTATG+TGG | - | chr8.1:80649054-80649073 | None:intergenic | 35.0% | |
| TCAAACTTAACTTCTGCATC+TGG | + | chr8.1:80647524-80647543 | MS.gene07783:CDS | 35.0% | |
| TCATTTATGAAGGTGGTCAT+AGG | + | chr8.1:80648233-80648252 | MS.gene07783:intron | 35.0% | |
| TCTGGTAACAGAACTGAAAT+TGG | + | chr8.1:80647563-80647582 | MS.gene07783:CDS | 35.0% | |
| TGTTGTTGTGAGGGTAAAAT+TGG | - | chr8.1:80648883-80648902 | None:intergenic | 35.0% | |
| ! | ATTGTATCCTAGGTTGACTT+TGG | + | chr8.1:80648262-80648281 | MS.gene07783:intron | 35.0% |
| ! | TGATGAGAAGATGATGATGA+AGG | - | chr8.1:80648907-80648926 | None:intergenic | 35.0% |
| !! | ATGATCCATCAAGAGCATTA+GGG | + | chr8.1:80647980-80647999 | MS.gene07783:CDS | 35.0% |
| !! | TAGAGCATTTTGTGATGCAT+TGG | + | chr8.1:80648819-80648838 | MS.gene07783:CDS | 35.0% |
| !!! | TTTCCACTTTTTCCACAGAA+TGG | - | chr8.1:80648561-80648580 | None:intergenic | 35.0% |
| !!! | TTTTTCATTGGTTGAGTTGG+AGG | - | chr8.1:80647632-80647651 | None:intergenic | 35.0% |
| AAAACAAACCTGGGTTACCA+GGG | - | chr8.1:80647667-80647686 | None:intergenic | 40.0% | |
| AAATCCCCTAATGCTCTTGA+TGG | - | chr8.1:80647988-80648007 | None:intergenic | 40.0% | |
| ACATGAACAAGACTAGGGTT+AGG | - | chr8.1:80649144-80649163 | None:intergenic | 40.0% | |
| ATAGCTATAACCTCAGCATC+AGG | - | chr8.1:80647775-80647794 | None:intergenic | 40.0% | |
| CAGGAACATGAACAAGACTA+GGG | - | chr8.1:80649149-80649168 | None:intergenic | 40.0% | |
| CATGAACAAGACTAGGGTTA+GGG | - | chr8.1:80649143-80649162 | None:intergenic | 40.0% | |
| GTTCTTTGCTTCAACTTCCA+TGG | - | chr8.1:80647904-80647923 | None:intergenic | 40.0% | |
| TAGCTATAACCTCAGCATCA+GGG | - | chr8.1:80647774-80647793 | None:intergenic | 40.0% | |
| TGTTTGGTAAGAAGGAAGTG+TGG | - | chr8.1:80649175-80649194 | None:intergenic | 40.0% | |
| TTATGCACCAAAGTCAACCT+AGG | - | chr8.1:80648272-80648291 | None:intergenic | 40.0% | |
| TTGCTGAAAGCAGCTCAAAT+GGG | + | chr8.1:80649229-80649248 | MS.gene07783:CDS | 40.0% | |
| TTTGCTGAAAGCAGCTCAAA+TGG | + | chr8.1:80649228-80649247 | MS.gene07783:CDS | 40.0% | |
| ! | AAGCACTTTTCCAGAAAGCA+TGG | + | chr8.1:80648021-80648040 | MS.gene07783:CDS | 40.0% |
| ! | GATGAAGGTTGTTGTTGTGA+GGG | - | chr8.1:80648892-80648911 | None:intergenic | 40.0% |
| ! | GTTTGGTAAGAAGGAAGTGT+GGG | - | chr8.1:80649174-80649193 | None:intergenic | 40.0% |
| ! | TGATGAAGGTTGTTGTTGTG+AGG | - | chr8.1:80648893-80648912 | None:intergenic | 40.0% |
| ! | TTCTCTAGTGCCACATGTTT+TGG | - | chr8.1:80648115-80648134 | None:intergenic | 40.0% |
| !! | ACCTTTCTGAAATTCCACCT+TGG | + | chr8.1:80649022-80649041 | MS.gene07783:CDS | 40.0% |
| !! | CATGATCCATCAAGAGCATT+AGG | + | chr8.1:80647979-80647998 | MS.gene07783:CDS | 40.0% |
| !! | TGATCCATCAAGAGCATTAG+GGG | + | chr8.1:80647981-80648000 | MS.gene07783:CDS | 40.0% |
| CCAGGAACATGAACAAGACT+AGG | - | chr8.1:80649150-80649169 | None:intergenic | 45.0% | |
| CTTCTTCTCACCATGCTTTC+TGG | - | chr8.1:80648034-80648053 | None:intergenic | 45.0% | |
| GAAAACAAACCTGGGTTACC+AGG | - | chr8.1:80647668-80647687 | None:intergenic | 45.0% | |
| GCCAAGGTGGAATTTCAGAA+AGG | - | chr8.1:80649026-80649045 | None:intergenic | 45.0% | |
| GGATCATGATGCACACAAGT+TGG | - | chr8.1:80647967-80647986 | None:intergenic | 45.0% | |
| GGTGAAGCTAGTGTTTCTTC+TGG | + | chr8.1:80647545-80647564 | MS.gene07783:CDS | 45.0% | |
| GTTCCAACAGCAACAAGTAG+TGG | + | chr8.1:80647490-80647509 | MS.gene07783:CDS | 45.0% | |
| ! | AGAGCATTAGGGGATTTGAC+TGG | + | chr8.1:80647991-80648010 | MS.gene07783:CDS | 45.0% |
| ! | CTTCCACTACTTGTTGCTGT+TGG | - | chr8.1:80647496-80647515 | None:intergenic | 45.0% |
| ! | GAAAGCATGGTGAGAAGAAG+TGG | + | chr8.1:80648034-80648053 | MS.gene07783:CDS | 45.0% |
| ! | TCTGAAATTCCACCTTGGCT+TGG | + | chr8.1:80649027-80649046 | MS.gene07783:CDS | 45.0% |
| !! | CCTAGTCTTGTTCATGTTCC+TGG | + | chr8.1:80649147-80649166 | MS.gene07783:CDS | 45.0% |
| !! | GAAGGTGCTGTTTGGTAAGA+AGG | - | chr8.1:80649183-80649202 | None:intergenic | 45.0% |
| !! | TGATGCACACAAGTTGGTTC+TGG | - | chr8.1:80647961-80647980 | None:intergenic | 45.0% |
| !! | TTTTTCAGACCCTGATGCTG+AGG | + | chr8.1:80647762-80647781 | MS.gene07783:intron | 45.0% |
| ACATTATGTGGGCCAAGCCA+AGG | - | chr8.1:80649042-80649061 | None:intergenic | 50.0% | |
| ACTGTGGAACCCTCTTCTCA+AGG | + | chr8.1:80648145-80648164 | MS.gene07783:CDS | 50.0% | |
| GTAGCTGACATGTGTGCTGA+AGG | - | chr8.1:80649201-80649220 | None:intergenic | 50.0% | |
| ! | TAAGAAGGAAGTGTGGGACC+AGG | - | chr8.1:80649168-80649187 | None:intergenic | 50.0% |
| !! | TGTGTGCTGAAGGTGCTGTT+TGG | - | chr8.1:80649191-80649210 | None:intergenic | 50.0% |
| ACAAACCTGGGTTACCAGGG+AGG | - | chr8.1:80647664-80647683 | None:intergenic | 55.0% | |
| AGAAACCTCCCTGGTAACCC+AGG | + | chr8.1:80647656-80647675 | MS.gene07783:CDS | 55.0% | |
| TTATGTGGGCCAAGCCAAGG+TGG | - | chr8.1:80649039-80649058 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 80647470 | 80649266 | 80647470 | ID=MS.gene07783 |
| chr8.1 | mRNA | 80647470 | 80649266 | 80647470 | ID=MS.gene07783.t1;Parent=MS.gene07783 |
| chr8.1 | exon | 80647470 | 80647677 | 80647470 | ID=MS.gene07783.t1.exon1;Parent=MS.gene07783.t1 |
| chr8.1 | CDS | 80647470 | 80647677 | 80647470 | ID=cds.MS.gene07783.t1;Parent=MS.gene07783.t1 |
| chr8.1 | exon | 80647770 | 80648166 | 80647770 | ID=MS.gene07783.t1.exon2;Parent=MS.gene07783.t1 |
| chr8.1 | CDS | 80647770 | 80648166 | 80647770 | ID=cds.MS.gene07783.t1;Parent=MS.gene07783.t1 |
| chr8.1 | exon | 80648798 | 80649266 | 80648798 | ID=MS.gene07783.t1.exon3;Parent=MS.gene07783.t1 |
| chr8.1 | CDS | 80648798 | 80649266 | 80648798 | ID=cds.MS.gene07783.t1;Parent=MS.gene07783.t1 |
| Gene Sequence |
| Protein sequence |
