Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052723.t1 | XP_003627109.1 | 85 | 447 | 32 | 4 | 1 | 419 | 1 | 440 | 3.50E-195 | 691 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052723.t1 | Q8H1F5 | 62.9 | 334 | 99 | 6 | 18 | 349 | 21 | 331 | 2.7e-95 | 350.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052723.t1 | G7LHG9 | 85.0 | 447 | 32 | 4 | 1 | 419 | 1 | 440 | 2.5e-195 | 691.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052723.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052723 | MS.gene052725 | 0.911649 | 4.79E-83 | -1.69E-46 |
| MS.gene052723 | MS.gene07781 | 0.872625 | 2.75E-67 | -1.69E-46 |
| MS.gene052723 | MS.gene07783 | 0.958843 | 8.60E-117 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052723.t1 | MTR_8g017210 | 88.147 | 464 | 20 | 5 | 1 | 436 | 1 | 457 | 0.0 | 769 |
| MS.gene052723.t1 | MTR_2g099990 | 60.987 | 446 | 116 | 18 | 18 | 438 | 1 | 413 | 1.77e-164 | 471 |
| MS.gene052723.t1 | MTR_2g099990 | 60.858 | 373 | 99 | 14 | 84 | 438 | 1 | 344 | 1.15e-138 | 403 |
| MS.gene052723.t1 | MTR_1g016010 | 50.109 | 457 | 135 | 14 | 1 | 429 | 1 | 392 | 2.34e-123 | 366 |
| MS.gene052723.t1 | MTR_4g059870 | 48.190 | 442 | 179 | 12 | 29 | 437 | 8 | 432 | 1.41e-114 | 345 |
| MS.gene052723.t1 | MTR_1g094115 | 88.415 | 164 | 19 | 0 | 58 | 221 | 45 | 208 | 1.49e-111 | 338 |
| MS.gene052723.t1 | MTR_1g112270 | 87.500 | 160 | 20 | 0 | 63 | 222 | 47 | 206 | 3.16e-108 | 331 |
| MS.gene052723.t1 | MTR_2g093960 | 68.981 | 216 | 56 | 4 | 59 | 265 | 31 | 244 | 9.42e-106 | 320 |
| MS.gene052723.t1 | MTR_1g112270 | 81.871 | 171 | 20 | 1 | 63 | 222 | 47 | 217 | 1.42e-104 | 322 |
| MS.gene052723.t1 | MTR_2g090745 | 50.992 | 353 | 131 | 8 | 70 | 385 | 17 | 364 | 8.13e-103 | 313 |
| MS.gene052723.t1 | MTR_1g094115 | 79.878 | 164 | 16 | 1 | 58 | 221 | 45 | 191 | 1.13e-95 | 297 |
| MS.gene052723.t1 | MTR_2g017720 | 76.667 | 120 | 23 | 1 | 65 | 184 | 318 | 432 | 1.55e-57 | 195 |
| MS.gene052723.t1 | MTR_3g102000 | 71.717 | 99 | 21 | 2 | 87 | 181 | 36 | 131 | 2.20e-41 | 147 |
| MS.gene052723.t1 | MTR_5g030560 | 72.000 | 50 | 14 | 0 | 65 | 114 | 11 | 60 | 4.05e-20 | 84.7 |
| MS.gene052723.t1 | MTR_1g093095 | 33.333 | 156 | 89 | 6 | 83 | 225 | 109 | 262 | 6.96e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052723.t1 | AT1G55110 | 60.057 | 348 | 114 | 7 | 14 | 359 | 17 | 341 | 1.56e-130 | 384 |
| MS.gene052723.t1 | AT1G55110 | 60.057 | 348 | 114 | 7 | 14 | 359 | 17 | 341 | 1.56e-130 | 384 |
| MS.gene052723.t1 | AT1G55110 | 60.057 | 348 | 114 | 7 | 14 | 359 | 17 | 341 | 1.56e-130 | 384 |
| MS.gene052723.t1 | AT3G13810 | 50.000 | 460 | 150 | 11 | 15 | 419 | 17 | 451 | 4.68e-127 | 377 |
| MS.gene052723.t1 | AT3G13810 | 50.000 | 460 | 150 | 11 | 15 | 419 | 17 | 451 | 4.68e-127 | 377 |
| MS.gene052723.t1 | AT3G13810 | 50.000 | 460 | 150 | 11 | 15 | 419 | 12 | 446 | 5.54e-127 | 377 |
| MS.gene052723.t1 | AT3G13810 | 49.891 | 457 | 149 | 11 | 18 | 419 | 1 | 432 | 2.43e-125 | 372 |
| MS.gene052723.t1 | AT3G13810 | 47.210 | 466 | 160 | 11 | 15 | 419 | 12 | 452 | 3.38e-113 | 342 |
| MS.gene052723.t1 | AT5G66730 | 75.362 | 207 | 34 | 2 | 17 | 222 | 4 | 194 | 3.94e-113 | 342 |
| MS.gene052723.t1 | AT5G44160 | 47.837 | 416 | 185 | 9 | 29 | 422 | 8 | 413 | 3.95e-113 | 340 |
| MS.gene052723.t1 | AT1G03840 | 78.173 | 197 | 38 | 2 | 52 | 248 | 35 | 226 | 6.38e-113 | 341 |
| MS.gene052723.t1 | AT3G50700 | 72.857 | 210 | 38 | 2 | 17 | 223 | 4 | 197 | 7.32e-113 | 339 |
| MS.gene052723.t1 | AT3G13810 | 47.084 | 463 | 159 | 11 | 18 | 419 | 1 | 438 | 1.89e-111 | 337 |
| MS.gene052723.t1 | AT4G02670 | 52.062 | 388 | 109 | 12 | 27 | 410 | 19 | 333 | 5.42e-111 | 333 |
| MS.gene052723.t1 | AT4G02670 | 52.062 | 388 | 109 | 12 | 27 | 410 | 17 | 331 | 6.53e-111 | 332 |
| MS.gene052723.t1 | AT1G14580 | 72.277 | 202 | 52 | 1 | 21 | 222 | 18 | 215 | 1.11e-109 | 332 |
| MS.gene052723.t1 | AT1G14580 | 72.277 | 202 | 52 | 1 | 21 | 222 | 18 | 215 | 1.11e-109 | 332 |
| MS.gene052723.t1 | AT2G02080 | 51.117 | 358 | 111 | 9 | 58 | 362 | 52 | 398 | 1.33e-109 | 333 |
| MS.gene052723.t1 | AT2G02080 | 51.117 | 358 | 111 | 9 | 58 | 362 | 52 | 398 | 1.33e-109 | 333 |
| MS.gene052723.t1 | AT2G02080 | 51.117 | 358 | 111 | 9 | 58 | 362 | 52 | 398 | 1.33e-109 | 333 |
| MS.gene052723.t1 | AT2G02080 | 51.117 | 358 | 111 | 9 | 58 | 362 | 52 | 398 | 1.33e-109 | 333 |
| MS.gene052723.t1 | AT3G45260 | 81.768 | 181 | 24 | 2 | 60 | 231 | 39 | 219 | 1.79e-109 | 330 |
| MS.gene052723.t1 | AT3G45260 | 81.768 | 181 | 24 | 2 | 60 | 231 | 39 | 219 | 1.79e-109 | 330 |
| MS.gene052723.t1 | AT1G14580 | 72.277 | 202 | 52 | 1 | 21 | 222 | 32 | 229 | 1.99e-109 | 331 |
| MS.gene052723.t1 | AT1G03840 | 77.157 | 197 | 38 | 3 | 52 | 248 | 35 | 224 | 4.71e-109 | 331 |
| MS.gene052723.t1 | AT2G02070 | 79.888 | 179 | 34 | 1 | 60 | 238 | 52 | 228 | 1.83e-106 | 328 |
| MS.gene052723.t1 | AT2G02070 | 79.888 | 179 | 34 | 1 | 60 | 238 | 52 | 228 | 1.83e-106 | 328 |
| MS.gene052723.t1 | AT5G03150 | 74.129 | 201 | 40 | 3 | 60 | 257 | 53 | 244 | 5.72e-106 | 323 |
| MS.gene052723.t1 | AT5G44160 | 48.267 | 375 | 164 | 8 | 70 | 422 | 8 | 374 | 4.32e-104 | 316 |
| MS.gene052723.t1 | AT5G60470 | 80.357 | 168 | 32 | 1 | 56 | 222 | 40 | 207 | 3.68e-103 | 315 |
| MS.gene052723.t1 | AT5G60470 | 75.543 | 184 | 41 | 2 | 40 | 222 | 23 | 203 | 4.04e-103 | 314 |
| MS.gene052723.t1 | AT5G60470 | 73.988 | 173 | 43 | 2 | 52 | 222 | 26 | 198 | 1.22e-94 | 292 |
| MS.gene052723.t1 | AT2G02080 | 49.398 | 332 | 104 | 9 | 84 | 362 | 1 | 321 | 2.95e-94 | 291 |
| MS.gene052723.t1 | AT2G02080 | 49.398 | 332 | 104 | 9 | 84 | 362 | 1 | 321 | 2.95e-94 | 291 |
| MS.gene052723.t1 | AT1G25250 | 65.605 | 157 | 51 | 2 | 60 | 213 | 33 | 189 | 7.95e-75 | 239 |
| MS.gene052723.t1 | AT1G68130 | 65.385 | 156 | 52 | 2 | 60 | 213 | 41 | 196 | 3.66e-74 | 238 |
| MS.gene052723.t1 | AT2G01940 | 64.198 | 162 | 56 | 2 | 56 | 215 | 40 | 201 | 5.02e-74 | 239 |
| MS.gene052723.t1 | AT1G25250 | 62.577 | 163 | 56 | 3 | 56 | 213 | 4 | 166 | 6.11e-72 | 231 |
| MS.gene052723.t1 | AT2G01940 | 63.190 | 163 | 57 | 3 | 56 | 215 | 40 | 202 | 2.04e-70 | 229 |
| MS.gene052723.t1 | AT1G68130 | 66.364 | 110 | 35 | 2 | 106 | 213 | 1 | 110 | 1.32e-47 | 166 |
| MS.gene052723.t1 | AT1G25250 | 65.766 | 111 | 35 | 2 | 106 | 213 | 1 | 111 | 2.80e-47 | 165 |
| MS.gene052723.t1 | AT2G01940 | 64.286 | 112 | 38 | 2 | 106 | 215 | 1 | 112 | 2.66e-46 | 164 |
| MS.gene052723.t1 | AT1G34370 | 33.544 | 158 | 91 | 3 | 69 | 212 | 14 | 171 | 7.00e-24 | 101 |
| MS.gene052723.t1 | AT1G34370 | 33.544 | 158 | 91 | 3 | 69 | 212 | 224 | 381 | 1.51e-23 | 103 |
| MS.gene052723.t1 | AT1G34370 | 33.544 | 158 | 91 | 3 | 69 | 212 | 224 | 381 | 1.51e-23 | 103 |
| MS.gene052723.t1 | AT5G22890 | 32.530 | 166 | 96 | 4 | 61 | 212 | 191 | 354 | 1.79e-23 | 101 |
| MS.gene052723.t1 | AT1G13290 | 34.437 | 151 | 85 | 6 | 83 | 221 | 95 | 243 | 1.70e-19 | 89.0 |
| MS.gene052723.t1 | AT1G08290 | 31.720 | 186 | 105 | 8 | 47 | 212 | 129 | 312 | 6.00e-19 | 88.2 |
| MS.gene052723.t1 | AT3G20880 | 31.447 | 159 | 93 | 5 | 83 | 226 | 250 | 407 | 2.72e-18 | 87.0 |
| MS.gene052723.t1 | AT1G51220 | 33.094 | 139 | 83 | 4 | 83 | 212 | 172 | 309 | 3.37e-18 | 85.9 |
| MS.gene052723.t1 | AT3G57670 | 33.571 | 140 | 81 | 5 | 83 | 212 | 211 | 348 | 6.10e-18 | 85.5 |
| MS.gene052723.t1 | AT1G34790 | 33.557 | 149 | 89 | 4 | 73 | 212 | 129 | 276 | 4.64e-17 | 82.0 |
Find 0 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATATTATACATCTTC+CGG | + | 54953:12084-12103 | MS.gene052723:intron | 15.0% |
| !! | TTAATTTCATTCATTTATGA+AGG | + | 54953:12006-12025 | MS.gene052723:intron | 15.0% |
| !! | TTGATAAACATGTTATTAAT+GGG | + | 54953:11496-11515 | MS.gene052723:intron | 15.0% |
| !! | TTTGATAAACATGTTATTAA+TGG | + | 54953:11495-11514 | MS.gene052723:intron | 15.0% |
| !! | AAACAAAACAAAACAAAAGA+AGG | - | 54953:11478-11497 | MS.gene052723:intergenic | 20.0% |
| !! | AAGACAAATAGTCTATTATT+AGG | - | 54953:12397-12416 | MS.gene052723:intergenic | 20.0% |
| !! | CATTAAAAAATTTCCTTACT+AGG | - | 54953:12369-12388 | MS.gene052723:intergenic | 20.0% |
| !!! | TTAATGGGTTTTTTTTTGTT+TGG | + | 54953:11511-11530 | MS.gene052723:intron | 20.0% |
| ! | AAAAAGTAAAGAGAGAGAAA+AGG | + | 54953:12450-12469 | MS.gene052723:intron | 25.0% |
| ! | AAATTATGAAGATCTTGTTG+AGG | - | 54953:12747-12766 | MS.gene052723:intergenic | 25.0% |
| ! | ACCAAACATTTCATCAAATT+GGG | - | 54953:13269-13288 | MS.gene052723:intergenic | 25.0% |
| ! | AGAATGGAATTAGTGATTAT+GGG | - | 54953:12328-12347 | MS.gene052723:intergenic | 25.0% |
| ! | ATTTCATTCATTTATGAAGG+TGG | + | 54953:12009-12028 | MS.gene052723:intron | 25.0% |
| !!! | AGGTTTCTCTTTTTTTTCAT+TGG | - | 54953:11430-11449 | MS.gene052723:intergenic | 25.0% |
| !!! | GTTGCTCTTTTTTCAATAAT+GGG | - | 54953:12770-12789 | MS.gene052723:intergenic | 25.0% |
| !!! | TGTTGCTCTTTTTTCAATAA+TGG | - | 54953:12771-12790 | MS.gene052723:intergenic | 25.0% |
| !!! | TTTTTTGCTAGTAAACTCTT+TGG | - | 54953:11585-11604 | MS.gene052723:intergenic | 25.0% |
| !!! | TTTTTTTTCATTGGTTGAGT+TGG | - | 54953:11421-11440 | MS.gene052723:intergenic | 25.0% |
| AAAAGTGGAAATTCCTAGTA+AGG | + | 54953:12353-12372 | MS.gene052723:intron | 30.0% | |
| AATAATGTCTCTGGTAACTT+TGG | + | 54953:13107-13126 | MS.gene052723:CDS | 30.0% | |
| AATATGCTGTTCAATCTGAT+TGG | + | 54953:11862-11881 | MS.gene052723:CDS | 30.0% | |
| AATTTAGTTACCTTGAGAAG+AGG | - | 54953:11941-11960 | MS.gene052723:intergenic | 30.0% | |
| ACACACTTGATTTCTTACAT+TGG | + | 54953:12268-12287 | MS.gene052723:intron | 30.0% | |
| ACCCAATTTGATGAAATGTT+TGG | + | 54953:13265-13284 | MS.gene052723:CDS | 30.0% | |
| AGAGATGATCAACATTATGT+GGG | - | 54953:12836-12855 | MS.gene052723:intergenic | 30.0% | |
| AGAGTTTACTAGCAAAAAAC+AGG | + | 54953:11586-11605 | MS.gene052723:CDS | 30.0% | |
| ATTTAGTTACCTTGAGAAGA+GGG | - | 54953:11940-11959 | MS.gene052723:intergenic | 30.0% | |
| CAATTTGATGAAATGTTTGG+TGG | + | 54953:13268-13287 | MS.gene052723:CDS | 30.0% | |
| CACCAAACATTTCATCAAAT+TGG | - | 54953:13270-13289 | MS.gene052723:intergenic | 30.0% | |
| CAGAATGGAATTAGTGATTA+TGG | - | 54953:12329-12348 | MS.gene052723:intergenic | 30.0% | |
| CATTATTGAGAGAATCAACT+TGG | - | 54953:13094-13113 | MS.gene052723:intergenic | 30.0% | |
| CTTGTTGAGGATTATTGAAT+TGG | - | 54953:12734-12753 | MS.gene052723:intergenic | 30.0% | |
| TAATCACTAATTCCATTCTG+TGG | + | 54953:12329-12348 | MS.gene052723:intron | 30.0% | |
| TCAAGTTCAACAACAATACT+TGG | + | 54953:11390-11409 | MS.gene052723:CDS | 30.0% | |
| TGCTTATAATAGTGATCAGA+GGG | + | 54953:12220-12239 | MS.gene052723:intron | 30.0% | |
| TGGGTCTTAATATTCATAGT+TGG | - | 54953:13071-13090 | MS.gene052723:intergenic | 30.0% | |
| TTGCTTATAATAGTGATCAG+AGG | + | 54953:12219-12238 | MS.gene052723:intron | 30.0% | |
| ! | AAGTATTGTTGTTGAACTTG+AGG | - | 54953:11391-11410 | MS.gene052723:intergenic | 30.0% |
| ! | AGTATTGTTGTTGAACTTGA+GGG | - | 54953:11390-11409 | MS.gene052723:intergenic | 30.0% |
| ! | TTATGATGAGTTTTGCAGAA+GGG | + | 54953:12563-12582 | MS.gene052723:intron | 30.0% |
| ! | TTTATGATGAGTTTTGCAGA+AGG | + | 54953:12562-12581 | MS.gene052723:intron | 30.0% |
| ! | TTTTGCTTATAACAGTGAAC+CGG | - | 54953:12106-12125 | MS.gene052723:intergenic | 30.0% |
| !!! | TAGGTTTTGAATTGTATCCT+AGG | + | 54953:12035-12054 | MS.gene052723:intron | 30.0% |
| AAAAAAAAGAGAAACCTCCC+TGG | + | 54953:11433-11452 | MS.gene052723:CDS | 35.0% | |
| AAAGAAGGTTGAAAACAACC+TGG | - | 54953:11463-11482 | MS.gene052723:intergenic | 35.0% | |
| AAAGCTCATTCCAAAACATG+TGG | + | 54953:11885-11904 | MS.gene052723:CDS | 35.0% | |
| AAGAAGGTTGAAAACAACCT+GGG | - | 54953:11462-11481 | MS.gene052723:intergenic | 35.0% | |
| AAGTAAAGAGAGAGAAAAGG+AGG | + | 54953:12453-12472 | MS.gene052723:intron | 35.0% | |
| AATCTTCAACTTCACAGAAG+AGG | + | 54953:11651-11670 | MS.gene052723:CDS | 35.0% | |
| AGAGAATATAGATGTGACTG+TGG | + | 54953:11912-11931 | MS.gene052723:CDS | 35.0% | |
| AGTAAAGAGAGAGAAAAGGA+GGG | + | 54953:12454-12473 | MS.gene052723:intron | 35.0% | |
| ATTCCATTCTGTGGAAAAAG+TGG | + | 54953:12338-12357 | MS.gene052723:intron | 35.0% | |
| ATTGAGAGAATCAACTTGGT+GGG | - | 54953:13090-13109 | MS.gene052723:intergenic | 35.0% | |
| ATTTGTGAGATCTGCAACAA+AGG | + | 54953:11612-11631 | MS.gene052723:CDS | 35.0% | |
| GAAGAGGTCATAATTTACCA+TGG | + | 54953:11667-11686 | MS.gene052723:CDS | 35.0% | |
| GAGAGATGATCAACATTATG+TGG | - | 54953:12837-12856 | MS.gene052723:intergenic | 35.0% | |
| GATTCTCTCAATAATGTCTC+TGG | + | 54953:13098-13117 | MS.gene052723:CDS | 35.0% | |
| TATTGAGAGAATCAACTTGG+TGG | - | 54953:13091-13110 | MS.gene052723:intergenic | 35.0% | |
| TCAAACTTAACTTCTGCATC+TGG | + | 54953:11310-11329 | MS.gene052723:CDS | 35.0% | |
| TCATTTATGAAGGTGGTCAT+AGG | + | 54953:12016-12035 | MS.gene052723:intron | 35.0% | |
| TCTGGTAACAGAACTGAAAT+TGG | + | 54953:11349-11368 | MS.gene052723:CDS | 35.0% | |
| TGTTGTTGTGAGGGTAAAAT+TGG | - | 54953:12666-12685 | MS.gene052723:intergenic | 35.0% | |
| ! | ATTGTATCCTAGGTTGACTT+TGG | + | 54953:12045-12064 | MS.gene052723:intron | 35.0% |
| ! | TGATGAGAAGATGATGATGA+AGG | - | 54953:12690-12709 | MS.gene052723:intergenic | 35.0% |
| ! | TTTTCTTCTTCATCTCCTTC+TGG | + | 54953:13232-13251 | MS.gene052723:CDS | 35.0% |
| !! | ATGATCCATCAAGAGCATTA+GGG | + | 54953:11763-11782 | MS.gene052723:CDS | 35.0% |
| !! | TAGAGCATTTTGTGATGCAT+TGG | + | 54953:12602-12621 | MS.gene052723:CDS | 35.0% |
| !!! | TTTCCACTTTTTCCACAGAA+TGG | - | 54953:12344-12363 | MS.gene052723:intergenic | 35.0% |
| !!! | TTTTTCATTGGTTGAGTTGG+AGG | - | 54953:11418-11437 | MS.gene052723:intergenic | 35.0% |
| AAATCCCCTAATGCTCTTGA+TGG | - | 54953:11771-11790 | MS.gene052723:intergenic | 40.0% | |
| ACATGAACAAGACTAGGGTT+AGG | - | 54953:12927-12946 | MS.gene052723:intergenic | 40.0% | |
| ATAGCTATAACCTCAGCATC+AGG | - | 54953:11558-11577 | MS.gene052723:intergenic | 40.0% | |
| CAGGAACATGAACAAGACTA+GGG | - | 54953:12932-12951 | MS.gene052723:intergenic | 40.0% | |
| CATGAACAAGACTAGGGTTA+GGG | - | 54953:12926-12945 | MS.gene052723:intergenic | 40.0% | |
| GAAGAAGTAGTTGCAGTAGT+TGG | - | 54953:13184-13203 | MS.gene052723:intergenic | 40.0% | |
| GGTGCAACAATGAATAGAAC+TGG | + | 54953:13032-13051 | MS.gene052723:CDS | 40.0% | |
| GTTCTTTGCTTCAACTTCCA+TGG | - | 54953:11687-11706 | MS.gene052723:intergenic | 40.0% | |
| TAGCTATAACCTCAGCATCA+GGG | - | 54953:11557-11576 | MS.gene052723:intergenic | 40.0% | |
| TGTTTGGTAAGAAGGAAGTG+TGG | - | 54953:12958-12977 | MS.gene052723:intergenic | 40.0% | |
| TTATGCACCAAAGTCAACCT+AGG | - | 54953:12055-12074 | MS.gene052723:intergenic | 40.0% | |
| TTGCAGAAAGCAGCTCAAAT+GGG | + | 54953:13011-13030 | MS.gene052723:CDS | 40.0% | |
| ! | AAGCACTTTTCCAGAAAGCA+TGG | + | 54953:11804-11823 | MS.gene052723:CDS | 40.0% |
| ! | GATGAAGGTTGTTGTTGTGA+GGG | - | 54953:12675-12694 | MS.gene052723:intergenic | 40.0% |
| ! | GTTTGGTAAGAAGGAAGTGT+GGG | - | 54953:12957-12976 | MS.gene052723:intergenic | 40.0% |
| ! | TGATGAAGGTTGTTGTTGTG+AGG | - | 54953:12676-12695 | MS.gene052723:intergenic | 40.0% |
| ! | TTCTCTAGTGCCACATGTTT+TGG | - | 54953:11898-11917 | MS.gene052723:intergenic | 40.0% |
| !! | ACCTTTCTGAAATTCCACCT+TGG | + | 54953:12805-12824 | MS.gene052723:CDS | 40.0% |
| !! | CATGATCCATCAAGAGCATT+AGG | + | 54953:11762-11781 | MS.gene052723:CDS | 40.0% |
| !! | TGATCCATCAAGAGCATTAG+GGG | + | 54953:11764-11783 | MS.gene052723:CDS | 40.0% |
| CCAGGAACATGAACAAGACT+AGG | - | 54953:12933-12952 | MS.gene052723:intergenic | 45.0% | |
| CTTCTTCTCACCATGCTTTC+TGG | - | 54953:11817-11836 | MS.gene052723:intergenic | 45.0% | |
| GAAAACAACCTGGGTTACCA+GGG | - | 54953:11453-11472 | MS.gene052723:intergenic | 45.0% | |
| GAAGTAGTTGCAGTAGTTGG+TGG | - | 54953:13181-13200 | MS.gene052723:intergenic | 45.0% | |
| GCCAAGGTGGAATTTCAGAA+AGG | - | 54953:12809-12828 | MS.gene052723:intergenic | 45.0% | |
| GGATCATGATGCACACAAGT+TGG | - | 54953:11750-11769 | MS.gene052723:intergenic | 45.0% | |
| GGTGAAGCTAGTGTTTCTTC+TGG | + | 54953:11331-11350 | MS.gene052723:CDS | 45.0% | |
| GTTCCAACAGCAACAAGTAG+TGG | + | 54953:11276-11295 | MS.gene052723:CDS | 45.0% | |
| GTTGCAGAAAGCAGCTCAAA+TGG | + | 54953:13010-13029 | MS.gene052723:CDS | 45.0% | |
| TGAAAACAACCTGGGTTACC+AGG | - | 54953:11454-11473 | MS.gene052723:intergenic | 45.0% | |
| TGGGTTGCTTCAAATCCAGA+AGG | - | 54953:13250-13269 | MS.gene052723:intergenic | 45.0% | |
| ! | AGAGCATTAGGGGATTTGAC+TGG | + | 54953:11774-11793 | MS.gene052723:CDS | 45.0% |
| ! | CTTCCACTACTTGTTGCTGT+TGG | - | 54953:11282-11301 | MS.gene052723:intergenic | 45.0% |
| ! | GAAAGCATGGTGAGAAGAAG+TGG | + | 54953:11817-11836 | MS.gene052723:CDS | 45.0% |
| ! | TCTGAAATTCCACCTTGGCT+TGG | + | 54953:12810-12829 | MS.gene052723:CDS | 45.0% |
| !! | CCTAGTCTTGTTCATGTTCC+TGG | + | 54953:12930-12949 | MS.gene052723:CDS | 45.0% |
| !! | GAAGGTGCTGTTTGGTAAGA+AGG | - | 54953:12966-12985 | MS.gene052723:intergenic | 45.0% |
| !! | TGATGCACACAAGTTGGTTC+TGG | - | 54953:11744-11763 | MS.gene052723:intergenic | 45.0% |
| !! | TTTTTCAGACCCTGATGCTG+AGG | + | 54953:11545-11564 | MS.gene052723:intron | 45.0% |
| ACATTATGTGGGCCAAGCCA+AGG | - | 54953:12825-12844 | MS.gene052723:intergenic | 50.0% | |
| ACTGTGGAACCCTCTTCTCA+AGG | + | 54953:11928-11947 | MS.gene052723:CDS | 50.0% | |
| GTAGCTGACATGTGTGCTGA+AGG | - | 54953:12984-13003 | MS.gene052723:intergenic | 50.0% | |
| ! | TAAGAAGGAAGTGTGGGACC+AGG | - | 54953:12951-12970 | MS.gene052723:intergenic | 50.0% |
| !! | TGTGTGCTGAAGGTGCTGTT+TGG | - | 54953:12974-12993 | MS.gene052723:intergenic | 50.0% |
| AACAACCTGGGTTACCAGGG+AGG | - | 54953:11450-11469 | MS.gene052723:intergenic | 55.0% | |
| AGAAACCTCCCTGGTAACCC+AGG | + | 54953:11442-11461 | MS.gene052723:CDS | 55.0% | |
| TTATGTGGGCCAAGCCAAGG+TGG | - | 54953:12822-12841 | MS.gene052723:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 54953 | gene | 11256 | 13361 | 11256 | ID=MS.gene052723 |
| 54953 | mRNA | 11256 | 13361 | 11256 | ID=MS.gene052723.t1;Parent=MS.gene052723 |
| 54953 | exon | 11256 | 11463 | 11256 | ID=MS.gene052723.t1.exon1;Parent=MS.gene052723.t1 |
| 54953 | CDS | 11256 | 11463 | 11256 | ID=cds.MS.gene052723.t1;Parent=MS.gene052723.t1 |
| 54953 | exon | 11553 | 11949 | 11553 | ID=MS.gene052723.t1.exon2;Parent=MS.gene052723.t1 |
| 54953 | CDS | 11553 | 11949 | 11553 | ID=cds.MS.gene052723.t1;Parent=MS.gene052723.t1 |
| 54953 | exon | 12581 | 13141 | 12581 | ID=MS.gene052723.t1.exon3;Parent=MS.gene052723.t1 |
| 54953 | CDS | 12581 | 13141 | 12581 | ID=cds.MS.gene052723.t1;Parent=MS.gene052723.t1 |
| 54953 | exon | 13213 | 13361 | 13213 | ID=MS.gene052723.t1.exon4;Parent=MS.gene052723.t1 |
| 54953 | CDS | 13213 | 13361 | 13213 | ID=cds.MS.gene052723.t1;Parent=MS.gene052723.t1 |
| Gene Sequence |
| Protein sequence |
