Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08049.t1 | XP_003600425.1 | 98.9 | 476 | 5 | 0 | 1 | 476 | 1 | 476 | 4.50E-273 | 949.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08049.t1 | O65583 | 84.2 | 467 | 72 | 2 | 4 | 468 | 3 | 469 | 1.4e-230 | 800.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08049.t1 | G7IY62 | 98.9 | 476 | 5 | 0 | 1 | 476 | 1 | 476 | 3.3e-273 | 949.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05712 | MS.gene08049 | 0.965211 | 2.60E-124 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08049 | MS.gene040387 | PPI |
| MS.gene08049 | MS.gene79193 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08049.t1 | MTR_3g061030 | 98.950 | 476 | 5 | 0 | 1 | 476 | 1 | 476 | 0.0 | 968 |
| MS.gene08049.t1 | MTR_5g096660 | 85.381 | 472 | 66 | 2 | 3 | 471 | 2 | 473 | 0.0 | 840 |
| MS.gene08049.t1 | MTR_3g061030 | 99.268 | 410 | 3 | 0 | 67 | 476 | 1 | 410 | 0.0 | 833 |
| MS.gene08049.t1 | MTR_7g029450 | 74.895 | 474 | 112 | 3 | 1 | 467 | 1 | 474 | 0.0 | 730 |
| MS.gene08049.t1 | MTR_4g103620 | 73.742 | 457 | 105 | 3 | 13 | 467 | 10 | 453 | 0.0 | 692 |
| MS.gene08049.t1 | MTR_6g021580 | 41.622 | 185 | 99 | 4 | 32 | 215 | 21 | 197 | 5.62e-39 | 142 |
| MS.gene08049.t1 | MTR_8g069865 | 30.726 | 179 | 113 | 4 | 50 | 226 | 67 | 236 | 7.51e-17 | 84.0 |
| MS.gene08049.t1 | MTR_4g073890 | 29.609 | 179 | 115 | 4 | 50 | 226 | 91 | 260 | 3.57e-15 | 78.6 |
| MS.gene08049.t1 | MTR_4g073890 | 29.609 | 179 | 115 | 4 | 50 | 226 | 91 | 260 | 4.79e-15 | 77.8 |
| MS.gene08049.t1 | MTR_4g020090 | 26.733 | 202 | 144 | 4 | 268 | 465 | 80 | 281 | 7.68e-15 | 75.1 |
| MS.gene08049.t1 | MTR_4g112790 | 30.168 | 179 | 114 | 4 | 50 | 226 | 72 | 241 | 9.21e-15 | 77.4 |
| MS.gene08049.t1 | MTR_4g112790 | 30.168 | 179 | 114 | 4 | 50 | 226 | 72 | 241 | 1.28e-14 | 76.6 |
| MS.gene08049.t1 | MTR_5g027530 | 26.582 | 158 | 115 | 1 | 105 | 262 | 137 | 293 | 5.62e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08049.t1 | AT4G26510 | 84.154 | 467 | 72 | 2 | 4 | 468 | 3 | 469 | 0.0 | 814 |
| MS.gene08049.t1 | AT4G26510 | 84.154 | 467 | 72 | 2 | 4 | 468 | 3 | 469 | 0.0 | 814 |
| MS.gene08049.t1 | AT4G26510 | 84.154 | 467 | 72 | 2 | 4 | 468 | 3 | 469 | 0.0 | 814 |
| MS.gene08049.t1 | AT4G26510 | 84.154 | 467 | 72 | 2 | 4 | 468 | 3 | 469 | 0.0 | 814 |
| MS.gene08049.t1 | AT1G55810 | 81.876 | 469 | 78 | 3 | 3 | 468 | 2 | 466 | 0.0 | 794 |
| MS.gene08049.t1 | AT1G55810 | 81.876 | 469 | 78 | 3 | 3 | 468 | 2 | 466 | 0.0 | 794 |
| MS.gene08049.t1 | AT1G55810 | 81.876 | 469 | 78 | 3 | 3 | 468 | 2 | 466 | 0.0 | 794 |
| MS.gene08049.t1 | AT1G55810 | 78.208 | 491 | 78 | 4 | 3 | 468 | 2 | 488 | 0.0 | 782 |
| MS.gene08049.t1 | AT1G55810 | 78.208 | 491 | 78 | 4 | 3 | 468 | 2 | 488 | 0.0 | 782 |
| MS.gene08049.t1 | AT1G55810 | 80.810 | 469 | 78 | 4 | 3 | 468 | 2 | 461 | 0.0 | 778 |
| MS.gene08049.t1 | AT1G55810 | 81.659 | 458 | 72 | 4 | 14 | 468 | 3 | 451 | 0.0 | 769 |
| MS.gene08049.t1 | AT3G27190 | 74.120 | 483 | 109 | 4 | 1 | 467 | 1 | 483 | 0.0 | 729 |
| MS.gene08049.t1 | AT5G40870 | 73.045 | 486 | 115 | 3 | 1 | 470 | 1 | 486 | 0.0 | 724 |
| MS.gene08049.t1 | AT3G27440 | 74.246 | 431 | 110 | 1 | 38 | 467 | 19 | 449 | 0.0 | 678 |
| MS.gene08049.t1 | AT3G27440 | 74.876 | 402 | 100 | 1 | 67 | 467 | 1 | 402 | 0.0 | 640 |
| MS.gene08049.t1 | AT3G27440 | 74.611 | 386 | 97 | 1 | 38 | 422 | 19 | 404 | 0.0 | 602 |
| MS.gene08049.t1 | AT1G26190 | 30.726 | 179 | 113 | 4 | 50 | 226 | 67 | 236 | 2.83e-17 | 85.1 |
| MS.gene08049.t1 | AT1G26190 | 31.285 | 179 | 112 | 4 | 50 | 226 | 67 | 236 | 3.15e-17 | 84.3 |
| MS.gene08049.t1 | AT1G26190 | 30.726 | 179 | 113 | 4 | 50 | 226 | 67 | 236 | 3.40e-17 | 84.7 |
| MS.gene08049.t1 | AT1G26190 | 30.726 | 179 | 113 | 4 | 50 | 226 | 67 | 236 | 3.81e-17 | 84.3 |
| MS.gene08049.t1 | AT1G26190 | 30.726 | 179 | 113 | 4 | 50 | 226 | 67 | 236 | 5.17e-17 | 84.0 |
| MS.gene08049.t1 | AT1G73980 | 32.402 | 179 | 110 | 5 | 50 | 226 | 67 | 236 | 2.19e-15 | 79.3 |
| MS.gene08049.t1 | AT1G73980 | 32.402 | 179 | 110 | 5 | 50 | 226 | 67 | 236 | 2.19e-15 | 79.3 |
| MS.gene08049.t1 | AT1G73980 | 32.402 | 179 | 110 | 5 | 50 | 226 | 67 | 236 | 2.19e-15 | 79.3 |
| MS.gene08049.t1 | AT1G26190 | 33.582 | 134 | 86 | 2 | 95 | 226 | 8 | 140 | 3.99e-14 | 75.1 |
| MS.gene08049.t1 | AT3G53900 | 26.108 | 203 | 146 | 4 | 268 | 466 | 24 | 226 | 9.28e-14 | 71.2 |
| MS.gene08049.t1 | AT3G53900 | 26.108 | 203 | 146 | 4 | 268 | 466 | 89 | 291 | 3.18e-13 | 70.9 |
| MS.gene08049.t1 | AT1G32060 | 29.944 | 177 | 120 | 3 | 50 | 226 | 70 | 242 | 4.52e-13 | 71.2 |
Find 89 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCAGATGTTATAATTT+TGG | 0.148585 | 3.3:+48995493 | MS.gene08049:CDS |
| TAAGTCAGCTGTTGATTTAA+TGG | 0.276355 | 3.3:+48993226 | MS.gene08049:CDS |
| CGAGGAATTGCTTCGTGTTA+TGG | 0.284513 | 3.3:+48995190 | MS.gene08049:CDS |
| GAATGAATGACATATAAATT+TGG | 0.284658 | 3.3:-48996505 | None:intergenic |
| CATACCACATGTACACCTTT+AGG | 0.293979 | 3.3:-48998105 | None:intergenic |
| GCGAGTTGTGCTTGTTAATC+AGG | 0.300317 | 3.3:+48994407 | MS.gene08049:CDS |
| ACCTTTACAGCATGCTCTTA+AGG | 0.337060 | 3.3:-48997564 | None:intergenic |
| TAATTTCAGTGGGGAGAGTA+TGG | 0.342371 | 3.3:+48997535 | MS.gene08049:intron |
| AAGTCAGCTGTTGATTTAAT+GGG | 0.361494 | 3.3:+48993227 | MS.gene08049:CDS |
| TTTCCACGATCCTCGTGTTC+GGG | 0.372455 | 3.3:+48995529 | MS.gene08049:CDS |
| TGCTGTAAAGGTATTAAGAT+TGG | 0.386732 | 3.3:+48997575 | MS.gene08049:CDS |
| TGCCTTTCTGAGATATCGTT+TGG | 0.387639 | 3.3:-48997743 | None:intergenic |
| CAGGTTGTAGAACATGGTTT+GGG | 0.398829 | 3.3:+48996775 | MS.gene08049:intron |
| ATATCGGCATATTTCTTTGT+TGG | 0.406744 | 3.3:-48996385 | None:intergenic |
| ATATCAGTTGCTGATGTTGT+TGG | 0.410405 | 3.3:-48993323 | None:intergenic |
| TCAGGTTGTAGAACATGGTT+TGG | 0.415714 | 3.3:+48996774 | MS.gene08049:intron |
| TCCACGAGGTATGATGATAT+CGG | 0.428819 | 3.3:-48996401 | None:intergenic |
| TAACTCTTGAAGTCATACTT+TGG | 0.432602 | 3.3:-48995245 | None:intergenic |
| GTGACATCTGAGATAGAGAT+TGG | 0.433285 | 3.3:+48998153 | MS.gene08049:CDS |
| TTCTGATCGTTTGATTCGAT+TGG | 0.434269 | 3.3:+48996674 | MS.gene08049:CDS |
| ATACCGGGCATGGGCGAGTT+CGG | 0.438610 | 3.3:+48998198 | MS.gene08049:CDS |
| TCCAAAATTATAACATCTGA+AGG | 0.442172 | 3.3:-48995494 | None:intergenic |
| TACAACCAACCTTTCGTCAT+AGG | 0.445494 | 3.3:+48993347 | MS.gene08049:CDS |
| GATTTCTTTACTTATACAAA+AGG | 0.447550 | 3.3:+48997905 | MS.gene08049:CDS |
| TTCGTTTGGCAAGAAGGATC+AGG | 0.449737 | 3.3:+48995964 | MS.gene08049:CDS |
| GTTGCTGGTGGTGCAGCATC+CGG | 0.457285 | 3.3:+48994339 | MS.gene08049:CDS |
| GCTGTAAAGGTATTAAGATT+GGG | 0.459445 | 3.3:+48997576 | MS.gene08049:CDS |
| AGAAGGTGACAATGGTCAAC+AGG | 0.460710 | 3.3:+48997616 | MS.gene08049:CDS |
| TGCAGATGCTGATGTTCGTT+TGG | 0.464075 | 3.3:+48995950 | MS.gene08049:intron |
| TTACTGTTGGACCCTATCCT+TGG | 0.467327 | 3.3:+48997770 | MS.gene08049:CDS |
| TTATAATTTCAGGCTCCTAA+AGG | 0.470278 | 3.3:+48998090 | MS.gene08049:intron |
| CACGAGGATCGTGGAAAACA+AGG | 0.475686 | 3.3:-48995523 | None:intergenic |
| ACAAAAGTGATGCGTTAAGA+AGG | 0.484391 | 3.3:+48995267 | MS.gene08049:CDS |
| TGAAGATTACCGTGTCATAC+CGG | 0.485581 | 3.3:+48998182 | MS.gene08049:CDS |
| CTGATGTTCGTTTGGCAAGA+AGG | 0.491742 | 3.3:+48995958 | MS.gene08049:CDS |
| CTTGATCAGGTTGTAGAACA+TGG | 0.496475 | 3.3:+48996769 | MS.gene08049:intron |
| CATGAACCTGTGCCAAGGAT+AGG | 0.496913 | 3.3:-48997782 | None:intergenic |
| TCTCCGAACTCGCCCATGCC+CGG | 0.501169 | 3.3:-48998201 | None:intergenic |
| AGCGAGAAGGATCGGGACAT+TGG | 0.503321 | 3.3:+48995996 | MS.gene08049:CDS |
| GCCTTAAGAGCATGCTGTAA+AGG | 0.510977 | 3.3:+48997563 | MS.gene08049:CDS |
| CAGCACATCCGCACAAAGCT+TGG | 0.511983 | 3.3:+48996457 | MS.gene08049:CDS |
| GATTACAACTTTGATCATCC+TGG | 0.515812 | 3.3:+48994790 | MS.gene08049:CDS |
| TGATACCAGCGAGAAGGATC+GGG | 0.516168 | 3.3:+48995989 | MS.gene08049:CDS |
| GAGATTAAGAAATATGATGT+TGG | 0.522890 | 3.3:-48997940 | None:intergenic |
| GAGTTCGGAGATCGGTACTT+TGG | 0.525316 | 3.3:+48998213 | MS.gene08049:CDS |
| ATGAACCTGTGCCAAGGATA+GGG | 0.525822 | 3.3:-48997781 | None:intergenic |
| TTACCGTGTCATACCGGGCA+TGG | 0.525947 | 3.3:+48998188 | MS.gene08049:CDS |
| GTGATACCAGCGAGAAGGAT+CGG | 0.526363 | 3.3:+48995988 | MS.gene08049:CDS |
| ATTTCTTTACTTATACAAAA+GGG | 0.541370 | 3.3:+48997906 | MS.gene08049:CDS |
| GCATGGGCGAGTTCGGAGAT+CGG | 0.545497 | 3.3:+48998205 | MS.gene08049:CDS |
| GTAGTGGTTGCTTCACAGTA+AGG | 0.547142 | 3.3:+48998255 | MS.gene08049:CDS |
| GAAGATTACCGTGTCATACC+GGG | 0.551295 | 3.3:+48998183 | MS.gene08049:CDS |
| TACCGTGTCATACCGGGCAT+GGG | 0.555700 | 3.3:+48998189 | MS.gene08049:CDS |
| AGAAATATGATGTTGGACTC+TGG | 0.555877 | 3.3:-48997933 | None:intergenic |
| TTGGACCCTATCCTTGGCAC+AGG | 0.556021 | 3.3:+48997776 | MS.gene08049:CDS |
| AGAATGAAGTCATCAAAAGC+TGG | 0.564855 | 3.3:-48996361 | None:intergenic |
| TTACAATAACTTGACTGAGG+AGG | 0.569168 | 3.3:+48994750 | MS.gene08049:CDS |
| CGCCCATGCCCGGTATGACA+CGG | 0.574326 | 3.3:-48998191 | None:intergenic |
| AGAAAGGCACGTGTTACTGT+TGG | 0.578877 | 3.3:+48997757 | MS.gene08049:CDS |
| GACCATTGTCACCTTCTCTG+TGG | 0.583645 | 3.3:-48997610 | None:intergenic |
| CAAAAGTGATGCGTTAAGAA+GGG | 0.584050 | 3.3:+48995268 | MS.gene08049:CDS |
| GATTAACAAGCACAACTCGC+TGG | 0.584484 | 3.3:-48994404 | None:intergenic |
| ATGAAGATATTTGTTGACAC+AGG | 0.586048 | 3.3:+48995563 | MS.gene08049:CDS |
| AATGTCCCGATCCTTCTCGC+TGG | 0.600283 | 3.3:-48995994 | None:intergenic |
| ACACACCTATGACGAAAGGT+TGG | 0.603399 | 3.3:-48993352 | None:intergenic |
| AAATGCAGGTTCTGTATACA+CGG | 0.605115 | 3.3:+48996971 | MS.gene08049:intron |
| CATAACACGAAGCAATTCCT+CGG | 0.607036 | 3.3:-48995189 | None:intergenic |
| CCAAAATTATAACATCTGAA+GGG | 0.611028 | 3.3:-48995493 | None:intergenic |
| ACTGTCATGAACCTGTGCCA+AGG | 0.615431 | 3.3:-48997787 | None:intergenic |
| ACTCCCGAACACGAGGATCG+TGG | 0.615840 | 3.3:-48995532 | None:intergenic |
| TGCCAAACGATATCTCAGAA+AGG | 0.623532 | 3.3:+48997741 | MS.gene08049:CDS |
| GAAAACACACCTATGACGAA+AGG | 0.624653 | 3.3:-48993356 | None:intergenic |
| AGGTTCTGTATACACGGGTG+TGG | 0.626553 | 3.3:+48996977 | MS.gene08049:intron |
| CAGGCGTGATACCAGCGAGA+AGG | 0.627099 | 3.3:+48995983 | MS.gene08049:CDS |
| GTTATGGACAAGTTGAAGCA+TGG | 0.627582 | 3.3:+48995206 | MS.gene08049:CDS |
| GGCTCCTAAAGGTGTACATG+TGG | 0.628140 | 3.3:+48998101 | MS.gene08049:intron |
| AAGCAAGTGATCACTCCCAC+CGG | 0.630745 | 3.3:+48996817 | MS.gene08049:CDS |
| CATGTTGACCAAGCTTTGTG+CGG | 0.634982 | 3.3:-48996465 | None:intergenic |
| ATCCACAGAGAAGGTGACAA+TGG | 0.641587 | 3.3:+48997608 | MS.gene08049:CDS |
| GCCGATATCATCATACCTCG+TGG | 0.642641 | 3.3:+48996400 | MS.gene08049:CDS |
| GTGGTGTCTCTGTCATCAGA+AGG | 0.646781 | 3.3:+48997018 | MS.gene08049:CDS |
| TTCATCAACTCCCGAACACG+AGG | 0.650470 | 3.3:-48995539 | None:intergenic |
| AGATGATGATGAACAAGTAG+TGG | 0.657572 | 3.3:+48998239 | MS.gene08049:CDS |
| AATGCAGGTTCTGTATACAC+GGG | 0.676003 | 3.3:+48996972 | MS.gene08049:intron |
| AGGTTGTAGAACATGGTTTG+GGG | 0.676716 | 3.3:+48996776 | MS.gene08049:intron |
| GATATCATCATACCTCGTGG+AGG | 0.736631 | 3.3:+48996403 | MS.gene08049:CDS |
| ATTGCTGCTATGCAGATACG+GGG | 0.767252 | 3.3:+48996597 | MS.gene08049:intron |
| TCGTGGAGGAGATAATCACG+TGG | 0.786879 | 3.3:+48996417 | MS.gene08049:CDS |
| ACGTGATTATCTCCTCCACG+AGG | 0.810543 | 3.3:-48996415 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTGTAAAAATTTAAAA+CGG | - | chr3.3:48994272-48994291 | None:intergenic | 10.0% |
| !! | AAAAATTGAAAAATAAAGCA+TGG | - | chr3.3:48996207-48996226 | None:intergenic | 15.0% |
| !! | AAAATTGAAAAATAAAGCAT+GGG | - | chr3.3:48996206-48996225 | None:intergenic | 15.0% |
| !! | ATGATATTTACAACTTAAAA+CGG | - | chr3.3:48995325-48995344 | None:intergenic | 15.0% |
| !! | ATTTCTTTACTTATACAAAA+GGG | + | chr3.3:48997906-48997925 | MS.gene08049:CDS | 15.0% |
| !! | CAATAAAAAATATGAACTAA+AGG | - | chr3.3:48995600-48995619 | None:intergenic | 15.0% |
| !! | CATAAAAAAATTTCATTTCT+AGG | + | chr3.3:48997864-48997883 | MS.gene08049:intron | 15.0% |
| !!! | AAAATATTAGGTTTTTAGAT+TGG | - | chr3.3:48993547-48993566 | None:intergenic | 15.0% |
| !!! | ATTTATTTATCTATTTTTGC+AGG | + | chr3.3:48994315-48994334 | MS.gene08049:intron | 15.0% |
| !!! | CTAGAAATGAAATTTTTTTA+TGG | - | chr3.3:48997866-48997885 | None:intergenic | 15.0% |
| !!! | GCTTTATTTTTCAATTTTTT+GGG | + | chr3.3:48996208-48996227 | MS.gene08049:intron | 15.0% |
| !!! | TAGCATATGTTAATTTTATA+TGG | + | chr3.3:48995754-48995773 | MS.gene08049:intron | 15.0% |
| !!! | TATGATTTTCTTATAATTTC+AGG | + | chr3.3:48998080-48998099 | MS.gene08049:intron | 15.0% |
| !!! | TATTTTCTCTTTTTTTTGTT+TGG | + | chr3.3:48994925-48994944 | MS.gene08049:intron | 15.0% |
| !!! | TGCTTTATTTTTCAATTTTT+TGG | + | chr3.3:48996207-48996226 | MS.gene08049:intron | 15.0% |
| !!! | TTAATTTCATAATGTTGATT+TGG | + | chr3.3:48996152-48996171 | MS.gene08049:intron | 15.0% |
| !! | AAAACGGCTAAAAAAAAAAA+AGG | - | chr3.3:48995309-48995328 | None:intergenic | 20.0% |
| !! | AAACGAAAAATAAGACAAAA+AGG | - | chr3.3:48994630-48994649 | None:intergenic | 20.0% |
| !! | AAATTAACATATGCTATGTA+TGG | - | chr3.3:48995750-48995769 | None:intergenic | 20.0% |
| !! | AAGAAGTGATATAATCAATA+TGG | - | chr3.3:48996109-48996128 | None:intergenic | 20.0% |
| !! | AATTATGAATGTATTAGTTG+AGG | + | chr3.3:48995031-48995050 | MS.gene08049:intron | 20.0% |
| !! | AGAAGTGATATAATCAATAT+GGG | - | chr3.3:48996108-48996127 | None:intergenic | 20.0% |
| !! | CACGTTAAAACAAAATAAAA+TGG | - | chr3.3:48995461-48995480 | None:intergenic | 20.0% |
| !! | GAATGAATGACATATAAATT+TGG | - | chr3.3:48996508-48996527 | None:intergenic | 20.0% |
| !! | GATTTCTTTACTTATACAAA+AGG | + | chr3.3:48997905-48997924 | MS.gene08049:CDS | 20.0% |
| !! | TATGAACTAAAGGAAATAAA+AGG | - | chr3.3:48995590-48995609 | None:intergenic | 20.0% |
| !! | TGTACTTATATTGATACTTT+AGG | + | chr3.3:48994690-48994709 | MS.gene08049:intron | 20.0% |
| !! | TTTACTTATTGAACTATTCA+AGG | - | chr3.3:48997398-48997417 | None:intergenic | 20.0% |
| !!! | AATTTGGATATATTTTACAC+AGG | - | chr3.3:48996492-48996511 | None:intergenic | 20.0% |
| !!! | ATTAATTTTATTTCATCTCG+CGG | + | chr3.3:48995668-48995687 | MS.gene08049:intron | 20.0% |
| !!! | CTAAAAACCTAATATTTTGT+AGG | + | chr3.3:48993549-48993568 | MS.gene08049:intron | 20.0% |
| !!! | TATTCTTTATCAGATTTTGA+CGG | + | chr3.3:48996271-48996290 | MS.gene08049:intron | 20.0% |
| !!! | TTTGTCTTATTTTTCGTTTT+TGG | + | chr3.3:48994631-48994650 | MS.gene08049:intron | 20.0% |
| ! | AAAGAAAATATTGTGCTTGA+AGG | + | chr3.3:48997415-48997434 | MS.gene08049:intron | 25.0% |
| ! | AAATAAGACAAAAAGGAAGA+AGG | - | chr3.3:48994623-48994642 | None:intergenic | 25.0% |
| ! | AAGTGATATAATCAATATGG+GGG | - | chr3.3:48996106-48996125 | None:intergenic | 25.0% |
| ! | AATAAGACAAAAAGGAAGAA+GGG | - | chr3.3:48994622-48994641 | None:intergenic | 25.0% |
| ! | AATATTCCTCTAATTTCAGT+GGG | + | chr3.3:48997525-48997544 | MS.gene08049:intron | 25.0% |
| ! | ACAAAATCAAAATGAACTCA+TGG | - | chr3.3:48996072-48996091 | None:intergenic | 25.0% |
| ! | ACAACAATATAAAACCTAGA+AGG | - | chr3.3:48993770-48993789 | None:intergenic | 25.0% |
| ! | ACCAAAATTCATTTACTTGA+AGG | - | chr3.3:48996303-48996322 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+AGG | + | chr3.3:48997349-48997368 | MS.gene08049:intron | 25.0% |
| ! | ATAATATCCTGAAAATTGAC+AGG | + | chr3.3:48995068-48995087 | MS.gene08049:intron | 25.0% |
| ! | ATATGTATGCAAGCATATAA+AGG | - | chr3.3:48997656-48997675 | None:intergenic | 25.0% |
| ! | ATCATAATGTAACCAATCAA+AGG | - | chr3.3:48998066-48998085 | None:intergenic | 25.0% |
| ! | CAATATAAGTACAATAAGAC+AGG | - | chr3.3:48994683-48994702 | None:intergenic | 25.0% |
| ! | CATAATCTCATCTCATAAAT+AGG | + | chr3.3:48994001-48994020 | MS.gene08049:intron | 25.0% |
| ! | CATATCTATGCTTCATTTAT+TGG | + | chr3.3:48997671-48997690 | MS.gene08049:intron | 25.0% |
| ! | CCAAAATTATAACATCTGAA+GGG | - | chr3.3:48995496-48995515 | None:intergenic | 25.0% |
| ! | CCAATGAATAAGAAATAAAG+AGG | - | chr3.3:48994966-48994985 | None:intergenic | 25.0% |
| ! | CTTAGTTCCTACAAAATATT+AGG | - | chr3.3:48993559-48993578 | None:intergenic | 25.0% |
| ! | GAAGTGATATAATCAATATG+GGG | - | chr3.3:48996107-48996126 | None:intergenic | 25.0% |
| ! | GAGATTAAGAAATATGATGT+TGG | - | chr3.3:48997943-48997962 | None:intergenic | 25.0% |
| ! | TAATATTCCTCTAATTTCAG+TGG | + | chr3.3:48997524-48997543 | MS.gene08049:intron | 25.0% |
| ! | TATAATTTCACATCTTAGCA+AGG | - | chr3.3:48997460-48997479 | None:intergenic | 25.0% |
| ! | TCCAAAATTATAACATCTGA+AGG | - | chr3.3:48995497-48995516 | None:intergenic | 25.0% |
| ! | TGATATGCACTAAAAAAGAA+AGG | - | chr3.3:48995359-48995378 | None:intergenic | 25.0% |
| ! | TGTTTCTCAAAATGATCATT+GGG | + | chr3.3:48994493-48994512 | MS.gene08049:intron | 25.0% |
| ! | TTACTTAGCATTTAATATGC+AGG | + | chr3.3:48994099-48994118 | MS.gene08049:intron | 25.0% |
| ! | TTAGTATTTCAACAATGACA+CGG | - | chr3.3:48995896-48995915 | None:intergenic | 25.0% |
| !! | AATATTTTGTAGGAACTAAG+AGG | + | chr3.3:48993559-48993578 | MS.gene08049:intron | 25.0% |
| !! | ATACATTCATAATTTGTCTG+TGG | - | chr3.3:48995025-48995044 | None:intergenic | 25.0% |
| !! | CCTCTTTATTTCTTATTCAT+TGG | + | chr3.3:48994963-48994982 | MS.gene08049:intron | 25.0% |
| !! | GAGATTTTATTACATCGAAT+TGG | - | chr3.3:48993814-48993833 | None:intergenic | 25.0% |
| !! | TCAGATGTTATAATTTTGGA+AGG | + | chr3.3:48995497-48995516 | MS.gene08049:CDS | 25.0% |
| !! | TCCTTCAAGTAAATGAATTT+TGG | + | chr3.3:48996299-48996318 | MS.gene08049:intron | 25.0% |
| !! | TTAAGAAGGGTATATATCTT+TGG | + | chr3.3:48995281-48995300 | MS.gene08049:intron | 25.0% |
| !! | TTGTTTCTCAAAATGATCAT+TGG | + | chr3.3:48994492-48994511 | MS.gene08049:intron | 25.0% |
| !! | TTTTTACAATAACTTGACTG+AGG | + | chr3.3:48994747-48994766 | MS.gene08049:CDS | 25.0% |
| !!! | CTTCTACTTATTTTATAAGC+CGG | + | chr3.3:48995862-48995881 | MS.gene08049:intron | 25.0% |
| !!! | GATGTCACTATTTTAATTCT+TGG | - | chr3.3:48998141-48998160 | None:intergenic | 25.0% |
| AAAAACAATCACATTGCAGA+GGG | - | chr3.3:48998015-48998034 | None:intergenic | 30.0% | |
| AAAGTTACCATGTTGAAACA+TGG | - | chr3.3:48996938-48996957 | None:intergenic | 30.0% | |
| AAGCATGGGTTTCATTATTA+AGG | - | chr3.3:48996192-48996211 | None:intergenic | 30.0% | |
| AATGACTTCATTACTACTTG+GGG | - | chr3.3:48993394-48993413 | None:intergenic | 30.0% | |
| AATTCAAACTGGTCAATACT+TGG | - | chr3.3:48997107-48997126 | None:intergenic | 30.0% | |
| AGATACTTAGATAGTTAGAG+AGG | + | chr3.3:48993645-48993664 | MS.gene08049:intron | 30.0% | |
| AGCATATGATATTGTTGAAG+AGG | - | chr3.3:48994582-48994601 | None:intergenic | 30.0% | |
| AGTGATATAATCAATATGGG+GGG | - | chr3.3:48996105-48996124 | None:intergenic | 30.0% | |
| AGTTAACTACTTAACATGAC+AGG | + | chr3.3:48994720-48994739 | MS.gene08049:intron | 30.0% | |
| ATAAATACAGAAGAGCGAAA+CGG | + | chr3.3:48993689-48993708 | MS.gene08049:intron | 30.0% | |
| ATATCGGCATATTTCTTTGT+TGG | - | chr3.3:48996388-48996407 | None:intergenic | 30.0% | |
| ATATTCCTCTAATTTCAGTG+GGG | + | chr3.3:48997526-48997545 | MS.gene08049:intron | 30.0% | |
| ATCATACATGATAAGATCCT+AGG | + | chr3.3:48994227-48994246 | MS.gene08049:intron | 30.0% | |
| ATGAAGAAGAGAAAAACACA+TGG | - | chr3.3:48996900-48996919 | None:intergenic | 30.0% | |
| ATGTTTCAACATGGTAACTT+TGG | + | chr3.3:48996937-48996956 | MS.gene08049:intron | 30.0% | |
| ATTTGTACCATGTTTCAACA+TGG | + | chr3.3:48996928-48996947 | MS.gene08049:intron | 30.0% | |
| CAAATAAGTCCAATTCAAAC+TGG | - | chr3.3:48997118-48997137 | None:intergenic | 30.0% | |
| CAATGACTTCATTACTACTT+GGG | - | chr3.3:48993395-48993414 | None:intergenic | 30.0% | |
| CGGCTTATAAAATAAGTAGA+AGG | - | chr3.3:48995864-48995883 | None:intergenic | 30.0% | |
| CTATCACTTTCTAAATTGTG+TGG | + | chr3.3:48996719-48996738 | MS.gene08049:intron | 30.0% | |
| CTCAAAAATCAAGTACGAAA+AGG | - | chr3.3:48996852-48996871 | None:intergenic | 30.0% | |
| CTTAAATTATGCACTTGATC+AGG | + | chr3.3:48996756-48996775 | MS.gene08049:intron | 30.0% | |
| GCTTAAAATAATCGCTTAAC+AGG | - | chr3.3:48994145-48994164 | None:intergenic | 30.0% | |
| GTTTCTCAAAATGATCATTG+GGG | + | chr3.3:48994494-48994513 | MS.gene08049:intron | 30.0% | |
| TAACTCTTGAAGTCATACTT+TGG | - | chr3.3:48995248-48995267 | None:intergenic | 30.0% | |
| TACGAAAAGGAAATGATTAC+CGG | - | chr3.3:48996839-48996858 | None:intergenic | 30.0% | |
| TCAATGACTTCATTACTACT+TGG | - | chr3.3:48993396-48993415 | None:intergenic | 30.0% | |
| TTATAATTTCAGGCTCCTAA+AGG | + | chr3.3:48998090-48998109 | MS.gene08049:intron | 30.0% | |
| TTTCTCAAAATGATCATTGG+GGG | + | chr3.3:48994495-48994514 | MS.gene08049:intron | 30.0% | |
| ! | AAAATAAGTAGAAGGTACAC+AGG | - | chr3.3:48995856-48995875 | None:intergenic | 30.0% |
| ! | AATTTTCCTACATCACATTG+TGG | - | chr3.3:48995719-48995738 | None:intergenic | 30.0% |
| ! | ACGAAAAAAAGTCCACATTT+TGG | - | chr3.3:48994989-48995008 | None:intergenic | 30.0% |
| ! | ATGAAGATATTTGTTGACAC+AGG | + | chr3.3:48995563-48995582 | MS.gene08049:CDS | 30.0% |
| ! | CCCTTCAGATGTTATAATTT+TGG | + | chr3.3:48995493-48995512 | MS.gene08049:CDS | 30.0% |
| ! | TTGTTTTCATAAGCTACTCT+GGG | - | chr3.3:48997243-48997262 | None:intergenic | 30.0% |
| !! | AAAATTTTGATCCACAGAGA+AGG | + | chr3.3:48997599-48997618 | MS.gene08049:CDS | 30.0% |
| !! | AAACTGACTTGTAAAGTAAC+TGG | - | chr3.3:48993506-48993525 | None:intergenic | 30.0% |
| !! | AAGTATTGACCAGTTTGAAT+TGG | + | chr3.3:48997106-48997125 | MS.gene08049:intron | 30.0% |
| !! | AAGTCAGCTGTTGATTTAAT+GGG | + | chr3.3:48993227-48993246 | MS.gene08049:CDS | 30.0% |
| !! | ATCACTTCTTTTCAAGACTT+GGG | + | chr3.3:48996119-48996138 | MS.gene08049:intron | 30.0% |
| !! | ATCACTTGCTTTTCTGTAAA+TGG | - | chr3.3:48996808-48996827 | None:intergenic | 30.0% |
| !! | CTTTACAAGTCAGTTTTGTA+AGG | + | chr3.3:48993510-48993529 | MS.gene08049:intron | 30.0% |
| !! | GCTGTAAAGGTATTAAGATT+GGG | + | chr3.3:48997576-48997595 | MS.gene08049:CDS | 30.0% |
| !! | TAAGTCAGCTGTTGATTTAA+TGG | + | chr3.3:48993226-48993245 | MS.gene08049:CDS | 30.0% |
| !! | TATCACTTCTTTTCAAGACT+TGG | + | chr3.3:48996118-48996137 | MS.gene08049:intron | 30.0% |
| !! | TCATTTTTCTGGATTTCACA+TGG | + | chr3.3:48993265-48993284 | MS.gene08049:CDS | 30.0% |
| !! | TGCTGTAAAGGTATTAAGAT+TGG | + | chr3.3:48997575-48997594 | MS.gene08049:CDS | 30.0% |
| !!! | ATCACAAACTGTTTTTTTGC+CGG | - | chr3.3:48994361-48994380 | None:intergenic | 30.0% |
| !!! | TCTTCTGAAGTTCATTTTTC+TGG | + | chr3.3:48993254-48993273 | MS.gene08049:CDS | 30.0% |
| !!! | TTTTGTTTTAACGTGTCTTC+AGG | + | chr3.3:48995466-48995485 | MS.gene08049:intron | 30.0% |
| AAAAGGAAATGATTACCGGT+GGG | - | chr3.3:48996835-48996854 | None:intergenic | 35.0% | |
| AAATGCAGGTTCTGTATACA+CGG | + | chr3.3:48996971-48996990 | MS.gene08049:intron | 35.0% | |
| ACAAAAGTGATGCGTTAAGA+AGG | + | chr3.3:48995267-48995286 | MS.gene08049:CDS | 35.0% | |
| ACTCAAAGTCTGCAAGAAAA+TGG | - | chr3.3:48996544-48996563 | None:intergenic | 35.0% | |
| AGAAATATGATGTTGGACTC+TGG | - | chr3.3:48997936-48997955 | None:intergenic | 35.0% | |
| AGAATGAAGTCATCAAAAGC+TGG | - | chr3.3:48996364-48996383 | None:intergenic | 35.0% | |
| ATAGTTAGAGAGGATAGGTA+CGG | + | chr3.3:48993655-48993674 | MS.gene08049:intron | 35.0% | |
| ATATCAGTTGCTGATGTTGT+TGG | - | chr3.3:48993326-48993345 | None:intergenic | 35.0% | |
| ATATGCTATGTATGGAGAGA+AGG | - | chr3.3:48995742-48995761 | None:intergenic | 35.0% | |
| CAAAAGTGATGCGTTAAGAA+GGG | + | chr3.3:48995268-48995287 | MS.gene08049:CDS | 35.0% | |
| CATAATCCACAATGTGATGT+AGG | + | chr3.3:48995710-48995729 | MS.gene08049:intron | 35.0% | |
| CTTAGATAGTTAGAGAGGAT+AGG | + | chr3.3:48993650-48993669 | MS.gene08049:intron | 35.0% | |
| CTTATTCATTGGCCAAAATG+TGG | + | chr3.3:48994974-48994993 | MS.gene08049:intron | 35.0% | |
| CTTTCTATTCATACACATCG+TGG | + | chr3.3:48994439-48994458 | MS.gene08049:intron | 35.0% | |
| GAAAAACAATCACATTGCAG+AGG | - | chr3.3:48998016-48998035 | None:intergenic | 35.0% | |
| GAAAATAGACACAGGATTTG+AGG | - | chr3.3:48997986-48998005 | None:intergenic | 35.0% | |
| GAGGTGATAGAGATCATAAA+TGG | + | chr3.3:48993578-48993597 | MS.gene08049:intron | 35.0% | |
| GATTACAACTTTGATCATCC+TGG | + | chr3.3:48994790-48994809 | MS.gene08049:CDS | 35.0% | |
| GGAGATATGTTTCAGAGTTA+GGG | + | chr3.3:48994652-48994671 | MS.gene08049:intron | 35.0% | |
| TAATTGCTGCTATGCAGATA+CGG | + | chr3.3:48996595-48996614 | MS.gene08049:intron | 35.0% | |
| TCAATTCAGCAAAGACACTT+CGG | - | chr3.3:48997375-48997394 | None:intergenic | 35.0% | |
| TCTTTGAATGTAGTTCACAC+AGG | + | chr3.3:48993844-48993863 | MS.gene08049:intron | 35.0% | |
| TGGAGATATGTTTCAGAGTT+AGG | + | chr3.3:48994651-48994670 | MS.gene08049:intron | 35.0% | |
| TTACAATAACTTGACTGAGG+AGG | + | chr3.3:48994750-48994769 | MS.gene08049:CDS | 35.0% | |
| TTTATTTCATCTCGCGGAAT+TGG | + | chr3.3:48995674-48995693 | MS.gene08049:intron | 35.0% | |
| ! | AAAACACATGGAGACAGTTT+TGG | - | chr3.3:48996888-48996907 | None:intergenic | 35.0% |
| ! | ACATCACATTGTGGATTATG+AGG | - | chr3.3:48995710-48995729 | None:intergenic | 35.0% |
| ! | AGATGATGATGAACAAGTAG+TGG | + | chr3.3:48998239-48998258 | MS.gene08049:CDS | 35.0% |
| ! | AGGTGTGTTTTCTTATGACA+AGG | + | chr3.3:48993367-48993386 | MS.gene08049:intron | 35.0% |
| ! | CAAGCATATAAAGGTACAGA+TGG | - | chr3.3:48997647-48997666 | None:intergenic | 35.0% |
| ! | GAAGAATAATTGTACTGACC+AGG | - | chr3.3:48994811-48994830 | None:intergenic | 35.0% |
| ! | GATTTTTGTAAGAGGTTGTG+TGG | + | chr3.3:48996999-48997018 | MS.gene08049:CDS | 35.0% |
| ! | GTATTAGTCTAGCTCAAATC+TGG | + | chr3.3:48997040-48997059 | MS.gene08049:intron | 35.0% |
| ! | TGTCATTCATTCGACTTTTC+AGG | + | chr3.3:48996516-48996535 | MS.gene08049:CDS | 35.0% |
| ! | TTCTGATCGTTTGATTCGAT+TGG | + | chr3.3:48996674-48996693 | MS.gene08049:CDS | 35.0% |
| ! | TTTAAAACGGTGCATCAAAG+CGG | - | chr3.3:48994259-48994278 | None:intergenic | 35.0% |
| ! | TTTTCTGGATTTCACATGGA+TGG | + | chr3.3:48993269-48993288 | MS.gene08049:CDS | 35.0% |
| !! | GTTGTTTTCATAAGCTACTC+TGG | - | chr3.3:48997244-48997263 | None:intergenic | 35.0% |
| !!! | CTTTTTTGTGCTCCTTTGAT+TGG | + | chr3.3:48998051-48998070 | MS.gene08049:intron | 35.0% |
| AAGAACAAGCTTGACAGAAC+AGG | - | chr3.3:48994557-48994576 | None:intergenic | 40.0% | |
| AATGCAGGTTCTGTATACAC+GGG | + | chr3.3:48996972-48996991 | MS.gene08049:intron | 40.0% | |
| AATTGCTGCTATGCAGATAC+GGG | + | chr3.3:48996596-48996615 | MS.gene08049:intron | 40.0% | |
| ACCTTTACAGCATGCTCTTA+AGG | - | chr3.3:48997567-48997586 | None:intergenic | 40.0% | |
| AGGTTGTAGAACATGGTTTG+GGG | + | chr3.3:48996776-48996795 | MS.gene08049:intron | 40.0% | |
| ATCATGTATGATAGCTGTGC+AGG | - | chr3.3:48994219-48994238 | None:intergenic | 40.0% | |
| CAATGACACGGAAAATCTAC+CGG | - | chr3.3:48995884-48995903 | None:intergenic | 40.0% | |
| CAGGTTGTAGAACATGGTTT+GGG | + | chr3.3:48996775-48996794 | MS.gene08049:intron | 40.0% | |
| CATAACACGAAGCAATTCCT+CGG | - | chr3.3:48995192-48995211 | None:intergenic | 40.0% | |
| CATACCACATGTACACCTTT+AGG | - | chr3.3:48998108-48998127 | None:intergenic | 40.0% | |
| GAAAACACACCTATGACGAA+AGG | - | chr3.3:48993359-48993378 | None:intergenic | 40.0% | |
| GAAAAGGAAATGATTACCGG+TGG | - | chr3.3:48996836-48996855 | None:intergenic | 40.0% | |
| GGAAAGTCGAAAATAGACAC+AGG | - | chr3.3:48997994-48998013 | None:intergenic | 40.0% | |
| TAATTTCAGTGGGGAGAGTA+TGG | + | chr3.3:48997535-48997554 | MS.gene08049:intron | 40.0% | |
| TACAACCAACCTTTCGTCAT+AGG | + | chr3.3:48993347-48993366 | MS.gene08049:CDS | 40.0% | |
| TCCACGAGGTATGATGATAT+CGG | - | chr3.3:48996404-48996423 | None:intergenic | 40.0% | |
| TCTCACAAGTGCTTACATGT+TGG | - | chr3.3:48997151-48997170 | None:intergenic | 40.0% | |
| TGAAGATTACCGTGTCATAC+CGG | + | chr3.3:48998182-48998201 | MS.gene08049:CDS | 40.0% | |
| TGCCAAACGATATCTCAGAA+AGG | + | chr3.3:48997741-48997760 | MS.gene08049:CDS | 40.0% | |
| TGGATGATGTCTTCAAATGC+AGG | + | chr3.3:48996957-48996976 | MS.gene08049:intron | 40.0% | |
| TTTCACATCTTAGCAAGGAG+AGG | - | chr3.3:48997455-48997474 | None:intergenic | 40.0% | |
| ! | ACATTGTGGATTATGAGGAG+CGG | - | chr3.3:48995705-48995724 | None:intergenic | 40.0% |
| ! | AGCTCAAATCTGGAGTTACA+TGG | + | chr3.3:48997050-48997069 | MS.gene08049:intron | 40.0% |
| ! | ATCAGATGCTTTTGATACCG+AGG | + | chr3.3:48995172-48995191 | MS.gene08049:intron | 40.0% |
| ! | CTTGATCAGGTTGTAGAACA+TGG | + | chr3.3:48996769-48996788 | MS.gene08049:intron | 40.0% |
| ! | GACTACCTATCTGTGTCTTT+TGG | + | chr3.3:48993414-48993433 | MS.gene08049:intron | 40.0% |
| ! | GCTCAAATCTGGAGTTACAT+GGG | + | chr3.3:48997051-48997070 | MS.gene08049:intron | 40.0% |
| ! | GTGACATCTGAGATAGAGAT+TGG | + | chr3.3:48998153-48998172 | MS.gene08049:CDS | 40.0% |
| ! | GTTATGGACAAGTTGAAGCA+TGG | + | chr3.3:48995206-48995225 | MS.gene08049:CDS | 40.0% |
| ! | TACCTATCTGTGTCTTTTGG+TGG | + | chr3.3:48993417-48993436 | MS.gene08049:intron | 40.0% |
| ! | TCAGGTTGTAGAACATGGTT+TGG | + | chr3.3:48996774-48996793 | MS.gene08049:intron | 40.0% |
| !! | CTAGTCATTCGAGAGCATTA+GGG | + | chr3.3:48993721-48993740 | MS.gene08049:intron | 40.0% |
| !! | TGCCTTTCTGAGATATCGTT+TGG | - | chr3.3:48997746-48997765 | None:intergenic | 40.0% |
| !!! | GGATGGTTTTGAGAAAAGAG+AGG | + | chr3.3:48993286-48993305 | MS.gene08049:CDS | 40.0% |
| !!! | TCTATTTTTGCAGGTGTTGC+TGG | + | chr3.3:48994324-48994343 | MS.gene08049:intron | 40.0% |
| ACACACCTATGACGAAAGGT+TGG | - | chr3.3:48993355-48993374 | None:intergenic | 45.0% | |
| ACATCTTAGCAAGGAGAGGA+GGG | - | chr3.3:48997451-48997470 | None:intergenic | 45.0% | |
| ACTCTCCCCACTGAAATTAG+AGG | - | chr3.3:48997534-48997553 | None:intergenic | 45.0% | |
| AGAAGGTGACAATGGTCAAC+AGG | + | chr3.3:48997616-48997635 | MS.gene08049:CDS | 45.0% | |
| ATCCACAGAGAAGGTGACAA+TGG | + | chr3.3:48997608-48997627 | MS.gene08049:CDS | 45.0% | |
| ATGAACCTGTGCCAAGGATA+GGG | - | chr3.3:48997784-48997803 | None:intergenic | 45.0% | |
| ATTGACAGGCTAGCAGGATA+AGG | + | chr3.3:48995082-48995101 | MS.gene08049:intron | 45.0% | |
| ATTGCTGCTATGCAGATACG+GGG | + | chr3.3:48996597-48996616 | MS.gene08049:intron | 45.0% | |
| CACCACCAAAAGACACAGAT+AGG | - | chr3.3:48993422-48993441 | None:intergenic | 45.0% | |
| CGAGGAATTGCTTCGTGTTA+TGG | + | chr3.3:48995190-48995209 | MS.gene08049:CDS | 45.0% | |
| CTGAAAATTGACAGGCTAGC+AGG | + | chr3.3:48995076-48995095 | MS.gene08049:intron | 45.0% | |
| CTGATGTTCGTTTGGCAAGA+AGG | + | chr3.3:48995958-48995977 | MS.gene08049:CDS | 45.0% | |
| CTGGTCAATACTTGGAAGCA+AGG | - | chr3.3:48997099-48997118 | None:intergenic | 45.0% | |
| GAAGATTACCGTGTCATACC+GGG | + | chr3.3:48998183-48998202 | MS.gene08049:CDS | 45.0% | |
| GATATCATCATACCTCGTGG+AGG | + | chr3.3:48996403-48996422 | MS.gene08049:CDS | 45.0% | |
| GATTAACAAGCACAACTCGC+TGG | - | chr3.3:48994407-48994426 | None:intergenic | 45.0% | |
| TGCAGATGCTGATGTTCGTT+TGG | + | chr3.3:48995950-48995969 | MS.gene08049:intron | 45.0% | |
| TTACTGTTGGACCCTATCCT+TGG | + | chr3.3:48997770-48997789 | MS.gene08049:CDS | 45.0% | |
| TTCGTTTGGCAAGAAGGATC+AGG | + | chr3.3:48995964-48995983 | MS.gene08049:CDS | 45.0% | |
| TTGACAGAACAGGATGCTTG+AGG | - | chr3.3:48994547-48994566 | None:intergenic | 45.0% | |
| ! | AGAAAGGCACGTGTTACTGT+TGG | + | chr3.3:48997757-48997776 | MS.gene08049:CDS | 45.0% |
| ! | AGACACAGGATTTGAGGCAT+CGG | - | chr3.3:48997980-48997999 | None:intergenic | 45.0% |
| ! | ATTGTGGATTATGAGGAGCG+GGG | - | chr3.3:48995703-48995722 | None:intergenic | 45.0% |
| ! | CATGTTGACCAAGCTTTGTG+CGG | - | chr3.3:48996468-48996487 | None:intergenic | 45.0% |
| ! | CATTGTGGATTATGAGGAGC+GGG | - | chr3.3:48995704-48995723 | None:intergenic | 45.0% |
| ! | CGGGTGTGGATTTTTGTAAG+AGG | + | chr3.3:48996991-48997010 | MS.gene08049:CDS | 45.0% |
| ! | CTATCTGTGTCTTTTGGTGG+TGG | + | chr3.3:48993420-48993439 | MS.gene08049:intron | 45.0% |
| ! | GCCTTAAGAGCATGCTGTAA+AGG | + | chr3.3:48997563-48997582 | MS.gene08049:CDS | 45.0% |
| ! | GCGAGTTGTGCTTGTTAATC+AGG | + | chr3.3:48994407-48994426 | MS.gene08049:CDS | 45.0% |
| ! | TTTTCCACGATCCTCGTGTT+CGG | + | chr3.3:48995528-48995547 | MS.gene08049:CDS | 45.0% |
| !! | AAAGACACTTCGGCCTTGTT+TGG | - | chr3.3:48997365-48997384 | None:intergenic | 45.0% |
| !! | CATCAAAGCGGACTAAACCT+AGG | - | chr3.3:48994247-48994266 | None:intergenic | 45.0% |
| !! | CTGCTAGCCTGTCAATTTTC+AGG | - | chr3.3:48995078-48995097 | None:intergenic | 45.0% |
| !! | GCTAGTCATTCGAGAGCATT+AGG | + | chr3.3:48993720-48993739 | MS.gene08049:intron | 45.0% |
| !!! | ATTTTTGCAGGTGTTGCTGG+TGG | + | chr3.3:48994327-48994346 | MS.gene08049:intron | 45.0% |
| !! | ATTTACAAATAATTAATTAA+TGG | - | chr3.3:48993625-48993644 | None:intergenic | 5.0% |
| AAGCAAGTGATCACTCCCAC+CGG | + | chr3.3:48996817-48996836 | MS.gene08049:CDS | 50.0% | |
| ACGTGATTATCTCCTCCACG+AGG | - | chr3.3:48996418-48996437 | None:intergenic | 50.0% | |
| ACTGTCATGAACCTGTGCCA+AGG | - | chr3.3:48997790-48997809 | None:intergenic | 50.0% | |
| AGGGCGGTTACTTACCTTCT+AGG | + | chr3.3:48993753-48993772 | MS.gene08049:intron | 50.0% | |
| AGGTTCTGTATACACGGGTG+TGG | + | chr3.3:48996977-48996996 | MS.gene08049:intron | 50.0% | |
| ATCTTAGCAAGGAGAGGAGG+GGG | - | chr3.3:48997449-48997468 | None:intergenic | 50.0% | |
| CACATCTTAGCAAGGAGAGG+AGG | - | chr3.3:48997452-48997471 | None:intergenic | 50.0% | |
| CACGAGGATCGTGGAAAACA+AGG | - | chr3.3:48995526-48995545 | None:intergenic | 50.0% | |
| CATCTTAGCAAGGAGAGGAG+GGG | - | chr3.3:48997450-48997469 | None:intergenic | 50.0% | |
| CATGAACCTGTGCCAAGGAT+AGG | - | chr3.3:48997785-48997804 | None:intergenic | 50.0% | |
| GACCATTGTCACCTTCTCTG+TGG | - | chr3.3:48997613-48997632 | None:intergenic | 50.0% | |
| GAGTTCGGAGATCGGTACTT+TGG | + | chr3.3:48998213-48998232 | MS.gene08049:CDS | 50.0% | |
| GCCGATATCATCATACCTCG+TGG | + | chr3.3:48996400-48996419 | MS.gene08049:CDS | 50.0% | |
| GGTGACAATGGTCAACAGGT+TGG | + | chr3.3:48997620-48997639 | MS.gene08049:intron | 50.0% | |
| GTGATACCAGCGAGAAGGAT+CGG | + | chr3.3:48995988-48996007 | MS.gene08049:CDS | 50.0% | |
| GTGGTGTCTCTGTCATCAGA+AGG | + | chr3.3:48997018-48997037 | MS.gene08049:CDS | 50.0% | |
| TCGTGGAGGAGATAATCACG+TGG | + | chr3.3:48996417-48996436 | MS.gene08049:CDS | 50.0% | |
| TGATACCAGCGAGAAGGATC+GGG | + | chr3.3:48995989-48996008 | MS.gene08049:CDS | 50.0% | |
| TTCATCAACTCCCGAACACG+AGG | - | chr3.3:48995542-48995561 | None:intergenic | 50.0% | |
| TTTCCACGATCCTCGTGTTC+GGG | + | chr3.3:48995529-48995548 | MS.gene08049:CDS | 50.0% | |
| ! | GGCTCCTAAAGGTGTACATG+TGG | + | chr3.3:48998101-48998120 | MS.gene08049:intron | 50.0% |
| !! | TCGAGAGCATTAGGGCCTTA+GGG | + | chr3.3:48993729-48993748 | MS.gene08049:intron | 50.0% |
| !! | TTCGAGAGCATTAGGGCCTT+AGG | + | chr3.3:48993728-48993747 | MS.gene08049:intron | 50.0% |
| AATGTCCCGATCCTTCTCGC+TGG | - | chr3.3:48995997-48996016 | None:intergenic | 55.0% | |
| AGCATTAGGGCCTTAGGGCA+GGG | + | chr3.3:48993734-48993753 | MS.gene08049:intron | 55.0% | |
| AGCGAGAAGGATCGGGACAT+TGG | + | chr3.3:48995996-48996015 | MS.gene08049:CDS | 55.0% | |
| CAGCACATCCGCACAAAGCT+TGG | + | chr3.3:48996457-48996476 | MS.gene08049:CDS | 55.0% | |
| TAAGTAACCGCCCTGCCCTA+AGG | - | chr3.3:48993747-48993766 | None:intergenic | 55.0% | |
| TACCGTGTCATACCGGGCAT+GGG | + | chr3.3:48998189-48998208 | MS.gene08049:CDS | 55.0% | |
| TTACCGTGTCATACCGGGCA+TGG | + | chr3.3:48998188-48998207 | MS.gene08049:CDS | 55.0% | |
| TTGGACCCTATCCTTGGCAC+AGG | + | chr3.3:48997776-48997795 | MS.gene08049:CDS | 55.0% | |
| ACTCCCGAACACGAGGATCG+TGG | - | chr3.3:48995535-48995554 | None:intergenic | 60.0% | |
| ATACCGGGCATGGGCGAGTT+CGG | + | chr3.3:48998198-48998217 | MS.gene08049:CDS | 60.0% | |
| ATTAGGGCCTTAGGGCAGGG+CGG | + | chr3.3:48993737-48993756 | MS.gene08049:intron | 60.0% | |
| CAGGCGTGATACCAGCGAGA+AGG | + | chr3.3:48995983-48996002 | MS.gene08049:CDS | 60.0% | |
| GAGCATTAGGGCCTTAGGGC+AGG | + | chr3.3:48993733-48993752 | MS.gene08049:intron | 60.0% | |
| GCATGGGCGAGTTCGGAGAT+CGG | + | chr3.3:48998205-48998224 | MS.gene08049:CDS | 60.0% | |
| ! | GTTGCTGGTGGTGCAGCATC+CGG | + | chr3.3:48994339-48994358 | MS.gene08049:CDS | 60.0% |
| CGCCCATGCCCGGTATGACA+CGG | - | chr3.3:48998194-48998213 | None:intergenic | 65.0% | |
| TCTCCGAACTCGCCCATGCC+CGG | - | chr3.3:48998204-48998223 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 48993215 | 48998275 | 48993215 | ID=MS.gene08049 |
| chr3.3 | mRNA | 48993215 | 48998275 | 48993215 | ID=MS.gene08049.t1;Parent=MS.gene08049 |
| chr3.3 | exon | 48993215 | 48993368 | 48993215 | ID=MS.gene08049.t1.exon1;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48993215 | 48993368 | 48993215 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48994337 | 48994428 | 48994337 | ID=MS.gene08049.t1.exon2;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48994337 | 48994428 | 48994337 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48994742 | 48994811 | 48994742 | ID=MS.gene08049.t1.exon3;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48994742 | 48994811 | 48994742 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48995177 | 48995289 | 48995177 | ID=MS.gene08049.t1.exon4;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48995177 | 48995289 | 48995177 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48995488 | 48995584 | 48995488 | ID=MS.gene08049.t1.exon5;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48995488 | 48995584 | 48995488 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48995955 | 48996034 | 48995955 | ID=MS.gene08049.t1.exon6;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48995955 | 48996034 | 48995955 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48996343 | 48996537 | 48996343 | ID=MS.gene08049.t1.exon7;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48996343 | 48996537 | 48996343 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48996612 | 48996695 | 48996612 | ID=MS.gene08049.t1.exon8;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48996612 | 48996695 | 48996612 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48996778 | 48996838 | 48996778 | ID=MS.gene08049.t1.exon9;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48996778 | 48996838 | 48996778 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48996979 | 48997039 | 48996979 | ID=MS.gene08049.t1.exon10;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48996979 | 48997039 | 48996979 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48997544 | 48997637 | 48997544 | ID=MS.gene08049.t1.exon11;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48997544 | 48997637 | 48997544 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48997725 | 48997797 | 48997725 | ID=MS.gene08049.t1.exon12;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48997725 | 48997797 | 48997725 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48997886 | 48997968 | 48997886 | ID=MS.gene08049.t1.exon13;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48997886 | 48997968 | 48997886 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| chr3.3 | exon | 48998102 | 48998275 | 48998102 | ID=MS.gene08049.t1.exon14;Parent=MS.gene08049.t1 |
| chr3.3 | CDS | 48998102 | 48998275 | 48998102 | ID=cds.MS.gene08049.t1;Parent=MS.gene08049.t1 |
| Gene Sequence |
| Protein sequence |
