Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08317.t1 | XP_013442072.1 | 97.8 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 3.10E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08317.t1 | A0A072TFE0 | 97.8 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 2.2e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene08317 | 0.807101 | 5.96E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene08317 | 0.802642 | 5.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08317.t1 | MTR_0332s0020 | 97.826 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 1.14e-167 | 461 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08317.t1 | AT1G20225 | 53.883 | 206 | 95 | 0 | 24 | 229 | 23 | 228 | 1.48e-80 | 241 |
| MS.gene08317.t1 | AT1G76020 | 55.708 | 219 | 95 | 1 | 6 | 222 | 2 | 220 | 9.46e-80 | 239 |
| MS.gene08317.t1 | AT1G76020 | 55.556 | 171 | 74 | 1 | 6 | 174 | 2 | 172 | 1.42e-58 | 183 |
| MS.gene08317.t1 | AT1G76020 | 55.147 | 136 | 61 | 0 | 87 | 222 | 40 | 175 | 5.40e-49 | 159 |
Find 44 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAACAGGCGGCATTCTT+TGG | 0.273544 | 4.1:-16486448 | MS.gene08317:intron |
| GCCCTGACAGCGCTGATTCA+TGG | 0.321870 | 4.1:-16488171 | MS.gene08317:CDS |
| AGAGGCATTCTTCAAGTATC+AGG | 0.343425 | 4.1:-16487778 | MS.gene08317:intron |
| GGCCATGAATCAGCGCTGTC+AGG | 0.354911 | 4.1:+16488169 | None:intergenic |
| AACATTATTGACCCATTGAT+TGG | 0.376408 | 4.1:-16485968 | MS.gene08317:CDS |
| CAAAGAGGGTTAGAGATGTC+AGG | 0.401495 | 4.1:-16488349 | None:intergenic |
| TCAGCGCTGTCAGGGCATAA+AGG | 0.428310 | 4.1:+16488178 | None:intergenic |
| CTTGCTTGCGTTGCAGTCGC+TGG | 0.428343 | 4.1:-16488302 | MS.gene08317:CDS |
| TATCATACTTCTATCAAGAA+TGG | 0.446875 | 4.1:-16486346 | MS.gene08317:CDS |
| TCTTACCTTAAAAGAAATCC+TGG | 0.448490 | 4.1:+16486294 | None:intergenic |
| ATGCTCTTAACTACAGTGAT+TGG | 0.450656 | 4.1:-16485994 | MS.gene08317:CDS |
| GCTGCTTCAAGAGGAGTGTC+TGG | 0.461731 | 4.1:-16486064 | MS.gene08317:CDS |
| TTAAGAGCATTTCCTGCATC+GGG | 0.463376 | 4.1:+16486007 | None:intergenic |
| TGAAGAATGCCTCTAGCAAT+GGG | 0.483868 | 4.1:+16487787 | None:intergenic |
| CCTTAAAAGAAATCCTGGTC+AGG | 0.485521 | 4.1:+16486299 | None:intergenic |
| ACGAATCCGTCGTATTTCTT+CGG | 0.491616 | 4.1:+16488259 | None:intergenic |
| GGATTCGTGTTGCCCGATGC+AGG | 0.498005 | 4.1:-16486019 | MS.gene08317:CDS |
| TTGAAGAATGCCTCTAGCAA+TGG | 0.503848 | 4.1:+16487786 | None:intergenic |
| ATCCGTCGTATTTCTTCGGT+GGG | 0.511988 | 4.1:+16488263 | None:intergenic |
| GATTAGAGAACGAACGGTAG+AGG | 0.514766 | 4.1:+16488085 | None:intergenic |
| CTCTTAACTACAGTGATTGG+AGG | 0.515770 | 4.1:-16485991 | MS.gene08317:CDS |
| CTTGCGTTGCAGTCGCTGGT+CGG | 0.515983 | 4.1:-16488298 | MS.gene08317:CDS |
| GTTAAGAGCATTTCCTGCAT+CGG | 0.519058 | 4.1:+16486006 | None:intergenic |
| AATCCGTCGTATTTCTTCGG+TGG | 0.534773 | 4.1:+16488262 | None:intergenic |
| GCTCTAGATAAGTTCCGCGT+TGG | 0.547951 | 4.1:+16486421 | None:intergenic |
| CTAACTCCGACCACCTGACC+AGG | 0.550513 | 4.1:-16486312 | MS.gene08317:CDS |
| GCCATGAATCAGCGCTGTCA+GGG | 0.560993 | 4.1:+16488170 | None:intergenic |
| AGTTTACCTCAGCTACAGTT+GGG | 0.567465 | 4.1:-16486375 | MS.gene08317:CDS |
| AAGTTTACCTCAGCTACAGT+TGG | 0.568593 | 4.1:-16486376 | MS.gene08317:CDS |
| AAAGAGGGTTAGAGATGTCA+GGG | 0.570918 | 4.1:-16488348 | None:intergenic |
| CTGCAGTATGCTGCTTCAAG+AGG | 0.577685 | 4.1:-16486073 | MS.gene08317:intron |
| AGAGAACGAACGGTAGAGGA+AGG | 0.579079 | 4.1:+16488089 | None:intergenic |
| AGAAATCCTGGTCAGGTGGT+CGG | 0.601600 | 4.1:+16486306 | None:intergenic |
| GCGTTGCAGTCGCTGGTCGG+AGG | 0.605051 | 4.1:-16488295 | MS.gene08317:CDS |
| TGCTACATTCCCATTGCTAG+AGG | 0.605297 | 4.1:-16487796 | MS.gene08317:CDS |
| ACGCAACGAAAGCATTGTCA+TGG | 0.627698 | 4.1:+16487856 | None:intergenic |
| GGGTTAGAGATGTCAGGGAA+CGG | 0.638574 | 4.1:-16488343 | None:intergenic |
| AGAGTTCCCAACTGTAGCTG+AGG | 0.641687 | 4.1:+16486369 | None:intergenic |
| TAAAAGAAATCCTGGTCAGG+TGG | 0.643649 | 4.1:+16486302 | None:intergenic |
| AACAACGAGGGAAACACGAG+AGG | 0.659397 | 4.1:+16488117 | None:intergenic |
| CATTCTTTGGTGCTCCAACG+CGG | 0.671653 | 4.1:-16486435 | MS.gene08317:CDS |
| AGGAAGGAGATGAACAACGA+GGG | 0.716920 | 4.1:+16488105 | None:intergenic |
| ATCCCACCGAAGAAATACGA+CGG | 0.719573 | 4.1:-16488265 | MS.gene08317:CDS |
| GAGGAAGGAGATGAACAACG+AGG | 0.779581 | 4.1:+16488104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTCAATTATGTAT+TGG | - | chr4.1:16486513-16486532 | MS.gene08317:intron | 10.0% |
| !!! | ATGAATTTTTCTTCATATTT+TGG | - | chr4.1:16486362-16486381 | MS.gene08317:CDS | 15.0% |
| !!! | GATATGAAAAATAGTAATTT+TGG | + | chr4.1:16488061-16488080 | None:intergenic | 15.0% |
| !!! | TTTCATAATTGAATTGTTTT+CGG | - | chr4.1:16486331-16486350 | MS.gene08317:CDS | 15.0% |
| !! | AAAAAAAAAAAGACAAACTC+AGG | + | chr4.1:16486780-16486799 | None:intergenic | 20.0% |
| !! | TAAAAGTTACTAAAAGTGAA+GGG | + | chr4.1:16486193-16486212 | None:intergenic | 20.0% |
| !! | TTAAAAGTTACTAAAAGTGA+AGG | + | chr4.1:16486194-16486213 | None:intergenic | 20.0% |
| !! | TTCTATTAGAAAAGTTATTG+TGG | - | chr4.1:16487753-16487772 | MS.gene08317:intron | 20.0% |
| !!! | AGAAAAAAGTATTTCTTGAA+AGG | + | chr4.1:16488130-16488149 | None:intergenic | 20.0% |
| !!! | ATTTTCAATTATGTATTGGT+TGG | - | chr4.1:16486517-16486536 | MS.gene08317:intron | 20.0% |
| !!! | TAACTTTTCTAATAGAAAGA+AGG | + | chr4.1:16487750-16487769 | None:intergenic | 20.0% |
| ! | AAGGGTTAATATTACACATA+AGG | + | chr4.1:16487560-16487579 | None:intergenic | 25.0% |
| ! | AATATTGAAGGAAAACAACA+TGG | - | chr4.1:16487341-16487360 | MS.gene08317:intron | 25.0% |
| ! | AATCCATTGACATAGAAAAA+AGG | + | chr4.1:16488219-16488238 | None:intergenic | 25.0% |
| ! | AATTTATGCACATTCGAATT+TGG | - | chr4.1:16487495-16487514 | MS.gene08317:intron | 25.0% |
| ! | ATACCTGTTATGAATATTGA+AGG | - | chr4.1:16487329-16487348 | MS.gene08317:intron | 25.0% |
| ! | ATATGTTCCAACAATTTGAA+TGG | + | chr4.1:16487254-16487273 | None:intergenic | 25.0% |
| ! | CACAACATTTAAACTATTGA+GGG | + | chr4.1:16486891-16486910 | None:intergenic | 25.0% |
| ! | TAAACATGAATGTCTAGATT+TGG | + | chr4.1:16487215-16487234 | None:intergenic | 25.0% |
| ! | TATCATACTTCTATCAAGAA+TGG | - | chr4.1:16487907-16487926 | MS.gene08317:intron | 25.0% |
| ! | TATTCATAACAGGTATGATA+TGG | + | chr4.1:16487325-16487344 | None:intergenic | 25.0% |
| ! | TCAATCACAATGTGATTAAA+AGG | + | chr4.1:16487131-16487150 | None:intergenic | 25.0% |
| ! | TGTGTCTTTGATATTTGAAA+AGG | - | chr4.1:16487522-16487541 | MS.gene08317:intron | 25.0% |
| ! | TTCGTGTACTAGAATATAAT+TGG | - | chr4.1:16488018-16488037 | MS.gene08317:intron | 25.0% |
| ! | TTTCCTTCAATATTCATAAC+AGG | + | chr4.1:16487335-16487354 | None:intergenic | 25.0% |
| ! | TTTGAATGCAAATCTTTCTT+GGG | - | chr4.1:16487463-16487482 | MS.gene08317:intron | 25.0% |
| !! | AATCCTATTTTGCTACAAAT+TGG | + | chr4.1:16487589-16487608 | None:intergenic | 25.0% |
| !! | CTTGCATTGATATAATAACA+GGG | + | chr4.1:16487021-16487040 | None:intergenic | 25.0% |
| !! | TCTTGCATTGATATAATAAC+AGG | + | chr4.1:16487022-16487041 | None:intergenic | 25.0% |
| !! | TTGCATTGATATAATAACAG+GGG | + | chr4.1:16487020-16487039 | None:intergenic | 25.0% |
| !!! | AAAAAGTATTTCTTGAAAGG+AGG | + | chr4.1:16488127-16488146 | None:intergenic | 25.0% |
| !!! | AAAAGTATTTCTTGAAAGGA+GGG | + | chr4.1:16488126-16488145 | None:intergenic | 25.0% |
| AACATTATTGACCCATTGAT+TGG | - | chr4.1:16488285-16488304 | MS.gene08317:CDS | 30.0% | |
| AATGTGAACAATTGAGACAT+AGG | + | chr4.1:16487386-16487405 | None:intergenic | 30.0% | |
| ACATTTAAACTATTGAGGGA+TGG | + | chr4.1:16486887-16486906 | None:intergenic | 30.0% | |
| CCACAACATTTAAACTATTG+AGG | + | chr4.1:16486892-16486911 | None:intergenic | 30.0% | |
| CCTCAATAGTTTAAATGTTG+TGG | - | chr4.1:16486889-16486908 | MS.gene08317:intron | 30.0% | |
| CTTTGAATGCAAATCTTTCT+TGG | - | chr4.1:16487462-16487481 | MS.gene08317:intron | 30.0% | |
| GCTACAAATTGGCTATAAAA+GGG | + | chr4.1:16487578-16487597 | None:intergenic | 30.0% | |
| GTACTACAAAACAAACAATG+AGG | + | chr4.1:16486689-16486708 | None:intergenic | 30.0% | |
| TAAATGTTGTGGCAATTCTA+GGG | - | chr4.1:16486900-16486919 | MS.gene08317:intron | 30.0% | |
| TAGCCAATTTGTAGCAAAAT+AGG | - | chr4.1:16487583-16487602 | MS.gene08317:intron | 30.0% | |
| TATCAATGCAAGAAAGAACA+TGG | - | chr4.1:16487029-16487048 | MS.gene08317:intron | 30.0% | |
| TCCATTCGGTTAAGATATTT+CGG | - | chr4.1:16486733-16486752 | MS.gene08317:intron | 30.0% | |
| TCTTACCTTAAAAGAAATCC+TGG | + | chr4.1:16487962-16487981 | None:intergenic | 30.0% | |
| TGCTACAAATTGGCTATAAA+AGG | + | chr4.1:16487579-16487598 | None:intergenic | 30.0% | |
| TTAAATGTTGTGGCAATTCT+AGG | - | chr4.1:16486899-16486918 | MS.gene08317:intron | 30.0% | |
| TTGAATGCAAATCTTTCTTG+GGG | - | chr4.1:16487464-16487483 | MS.gene08317:intron | 30.0% | |
| TTGTCAACCATTCAAATTGT+TGG | - | chr4.1:16487244-16487263 | MS.gene08317:intron | 30.0% | |
| TTTCCGTGTCTTAAATCAAA+GGG | + | chr4.1:16488088-16488107 | None:intergenic | 30.0% | |
| ! | AACTTTTCATTATGTGAACC+CGG | + | chr4.1:16487186-16487205 | None:intergenic | 30.0% |
| ! | TTTTCCGTGTCTTAAATCAA+AGG | + | chr4.1:16488089-16488108 | None:intergenic | 30.0% |
| ! | TTTTCTTCACACCAATCAAT+GGG | + | chr4.1:16488299-16488318 | None:intergenic | 30.0% |
| !! | AAGCTGTTTTCAAATTTGCA+TGG | - | chr4.1:16486614-16486633 | MS.gene08317:intron | 30.0% |
| !! | AGCTGTTTTCAAATTTGCAT+GGG | - | chr4.1:16486615-16486634 | MS.gene08317:intron | 30.0% |
| !! | CTATGTTTGGCTTTAAATCT+TGG | - | chr4.1:16486545-16486564 | MS.gene08317:intron | 30.0% |
| !!! | AGCTTTTTTGAAACAGTCTA+CGG | + | chr4.1:16486599-16486618 | None:intergenic | 30.0% |
| !!! | TTTTCATTCCCTTTGTTTTC+TGG | - | chr4.1:16487075-16487094 | MS.gene08317:intron | 30.0% |
| AAATTTGCATGGGACTTTCA+AGG | - | chr4.1:16486625-16486644 | MS.gene08317:intron | 35.0% | |
| ACTGCAGTTCGAAGAAAATT+AGG | + | chr4.1:16488167-16488186 | None:intergenic | 35.0% | |
| ATACACTAGATTTAGTGAGC+AGG | + | chr4.1:16487782-16487801 | None:intergenic | 35.0% | |
| ATGCTCTTAACTACAGTGAT+TGG | - | chr4.1:16488259-16488278 | MS.gene08317:CDS | 35.0% | |
| TATATGATCCTACTCGACAT+GGG | + | chr4.1:16486862-16486881 | None:intergenic | 35.0% | |
| TCCGAAATATCTTAACCGAA+TGG | + | chr4.1:16486737-16486756 | None:intergenic | 35.0% | |
| TCTAGTGTATACCCTTTAAC+AGG | - | chr4.1:16487792-16487811 | MS.gene08317:CDS | 35.0% | |
| TTATATGATCCTACTCGACA+TGG | + | chr4.1:16486863-16486882 | None:intergenic | 35.0% | |
| TTGGTTGGATATGCTATGTT+TGG | - | chr4.1:16486532-16486551 | MS.gene08317:intron | 35.0% | |
| ! | ATTAGTTTCCAAGTTGCACA+TGG | + | chr4.1:16486839-16486858 | None:intergenic | 35.0% |
| ! | CTTTTCTTCACACCAATCAA+TGG | + | chr4.1:16488300-16488319 | None:intergenic | 35.0% |
| ! | TGACACATATTTCTGCACAA+TGG | + | chr4.1:16487295-16487314 | None:intergenic | 35.0% |
| !! | AAATAGGATTAGCCATGGAA+CGG | - | chr4.1:16487599-16487618 | MS.gene08317:intron | 35.0% |
| !! | TAGCAAAATAGGATTAGCCA+TGG | - | chr4.1:16487594-16487613 | MS.gene08317:intron | 35.0% |
| !!! | ACGCCTTTTTTCTATGTCAA+TGG | - | chr4.1:16488213-16488232 | MS.gene08317:CDS | 35.0% |
| !!! | TGATGAAGAGCTTTTTTGAG+AGG | + | chr4.1:16486111-16486130 | None:intergenic | 35.0% |
| AAACTAATCCCATGTCGAGT+AGG | - | chr4.1:16486851-16486870 | MS.gene08317:intron | 40.0% | |
| AAAGAATGCCGCCTGTTAAA+GGG | + | chr4.1:16487806-16487825 | None:intergenic | 40.0% | |
| AAGCTTAAGCTGCTTCCATT+CGG | - | chr4.1:16486719-16486738 | MS.gene08317:intron | 40.0% | |
| AAGTTTACCTCAGCTACAGT+TGG | - | chr4.1:16487877-16487896 | MS.gene08317:intron | 40.0% | |
| ACATGCACACCAGAAAACAA+AGG | + | chr4.1:16487087-16487106 | None:intergenic | 40.0% | |
| ACGAATCCGTCGTATTTCTT+CGG | + | chr4.1:16485997-16486016 | None:intergenic | 40.0% | |
| AGTGTATACCCTTTAACAGG+CGG | - | chr4.1:16487795-16487814 | MS.gene08317:CDS | 40.0% | |
| AGTTTACCTCAGCTACAGTT+GGG | - | chr4.1:16487878-16487897 | MS.gene08317:intron | 40.0% | |
| CATGCACACCAGAAAACAAA+GGG | + | chr4.1:16487086-16487105 | None:intergenic | 40.0% | |
| CCTTAAAAGAAATCCTGGTC+AGG | + | chr4.1:16487957-16487976 | None:intergenic | 40.0% | |
| CTCTTAACTACAGTGATTGG+AGG | - | chr4.1:16488262-16488281 | MS.gene08317:CDS | 40.0% | |
| CTGTTTCATAAGCACATGAG+AGG | - | chr4.1:16486218-16486237 | MS.gene08317:intron | 40.0% | |
| GAGTATTTCCATGTGCAACT+TGG | - | chr4.1:16486828-16486847 | MS.gene08317:intron | 40.0% | |
| GCATTCTTCAAGTATCAGGT+TGG | - | chr4.1:16486479-16486498 | MS.gene08317:intron | 40.0% | |
| GCTAAAAGCTGACTGTTAAC+AGG | + | chr4.1:16486654-16486673 | None:intergenic | 40.0% | |
| TAAAAGAAATCCTGGTCAGG+TGG | + | chr4.1:16487954-16487973 | None:intergenic | 40.0% | |
| TCTTTCATGCACAGACTACA+CGG | - | chr4.1:16486933-16486952 | MS.gene08317:intron | 40.0% | |
| TGAAGAATGCCTCTAGCAAT+GGG | + | chr4.1:16486469-16486488 | None:intergenic | 40.0% | |
| TGAAGGGATTAGAGAACGAA+CGG | + | chr4.1:16486177-16486196 | None:intergenic | 40.0% | |
| TTGAAGAATGCCTCTAGCAA+TGG | + | chr4.1:16486470-16486489 | None:intergenic | 40.0% | |
| ! | CAGCCCTTTGATTTAAGACA+CGG | - | chr4.1:16488082-16488101 | MS.gene08317:intron | 40.0% |
| ! | CCTGACCAGGATTTCTTTTA+AGG | - | chr4.1:16487954-16487973 | MS.gene08317:intron | 40.0% |
| !! | AGAGGCATTCTTCAAGTATC+AGG | - | chr4.1:16486475-16486494 | MS.gene08317:intron | 40.0% |
| !! | GTTAAGAGCATTTCCTGCAT+CGG | + | chr4.1:16488250-16488269 | None:intergenic | 40.0% |
| !! | TTAAGAGCATTTCCTGCATC+GGG | + | chr4.1:16488249-16488268 | None:intergenic | 40.0% |
| !!! | TGAAGAGCTTTTTTGAGAGG+TGG | + | chr4.1:16486108-16486127 | None:intergenic | 40.0% |
| AATCCGTCGTATTTCTTCGG+TGG | + | chr4.1:16485994-16486013 | None:intergenic | 45.0% | |
| AGCTTTGCATCTGATTCCTG+GGG | - | chr4.1:16487150-16487169 | MS.gene08317:intron | 45.0% | |
| AGGAAGGAGATGAACAACGA+GGG | + | chr4.1:16486151-16486170 | None:intergenic | 45.0% | |
| ATCCCACCGAAGAAATACGA+CGG | - | chr4.1:16485988-16486007 | MS.gene08317:CDS | 45.0% | |
| ATCCGTCGTATTTCTTCGGT+GGG | + | chr4.1:16485993-16486012 | None:intergenic | 45.0% | |
| CAAAGAATGCCGCCTGTTAA+AGG | + | chr4.1:16487807-16487826 | None:intergenic | 45.0% | |
| CTGTGAGTGACTTTGCATGT+TGG | - | chr4.1:16486570-16486589 | MS.gene08317:intron | 45.0% | |
| CTTTAACAGGCGGCATTCTT+TGG | - | chr4.1:16487805-16487824 | MS.gene08317:CDS | 45.0% | |
| GAGCTTTGCATCTGATTCCT+GGG | - | chr4.1:16487149-16487168 | MS.gene08317:intron | 45.0% | |
| GATTAGAGAACGAACGGTAG+AGG | + | chr4.1:16486171-16486190 | None:intergenic | 45.0% | |
| GGAGTCATATGCTGCATTCT+AGG | - | chr4.1:16486754-16486773 | MS.gene08317:intron | 45.0% | |
| TGAGCTTTGCATCTGATTCC+TGG | - | chr4.1:16487148-16487167 | MS.gene08317:intron | 45.0% | |
| TGCTACATTCCCATTGCTAG+AGG | - | chr4.1:16486457-16486476 | MS.gene08317:intron | 45.0% | |
| TGTGAGAGAAAACCGTTCCA+TGG | + | chr4.1:16487614-16487633 | None:intergenic | 45.0% | |
| !! | ACGCAACGAAAGCATTGTCA+TGG | + | chr4.1:16486400-16486419 | None:intergenic | 45.0% |
| AACAACGAGGGAAACACGAG+AGG | + | chr4.1:16486139-16486158 | None:intergenic | 50.0% | |
| AGAAATCCTGGTCAGGTGGT+CGG | + | chr4.1:16487950-16487969 | None:intergenic | 50.0% | |
| AGAGAACGAACGGTAGAGGA+AGG | + | chr4.1:16486167-16486186 | None:intergenic | 50.0% | |
| AGAGTTCCCAACTGTAGCTG+AGG | + | chr4.1:16487887-16487906 | None:intergenic | 50.0% | |
| GAGGAAGGAGATGAACAACG+AGG | + | chr4.1:16486152-16486171 | None:intergenic | 50.0% | |
| ! | CTGCAGTATGCTGCTTCAAG+AGG | - | chr4.1:16488180-16488199 | MS.gene08317:CDS | 50.0% |
| ! | GCTCTAGATAAGTTCCGCGT+TGG | + | chr4.1:16487835-16487854 | None:intergenic | 50.0% |
| !! | CATTCTTTGGTGCTCCAACG+CGG | - | chr4.1:16487818-16487837 | MS.gene08317:CDS | 50.0% |
| GCCATGAATCAGCGCTGTCA+GGG | + | chr4.1:16486086-16486105 | None:intergenic | 55.0% | |
| TCAGCGCTGTCAGGGCATAA+AGG | + | chr4.1:16486078-16486097 | None:intergenic | 55.0% | |
| !! | GCTGCTTCAAGAGGAGTGTC+TGG | - | chr4.1:16488189-16488208 | MS.gene08317:CDS | 55.0% |
| CTAACTCCGACCACCTGACC+AGG | - | chr4.1:16487941-16487960 | MS.gene08317:intron | 60.0% | |
| CTTGCGTTGCAGTCGCTGGT+CGG | - | chr4.1:16485955-16485974 | MS.gene08317:CDS | 60.0% | |
| CTTGCTTGCGTTGCAGTCGC+TGG | - | chr4.1:16485951-16485970 | MS.gene08317:CDS | 60.0% | |
| GGATTCGTGTTGCCCGATGC+AGG | - | chr4.1:16488234-16488253 | MS.gene08317:CDS | 60.0% | |
| GGCCATGAATCAGCGCTGTC+AGG | + | chr4.1:16486087-16486106 | None:intergenic | 60.0% | |
| TTCCTGGGGCAGTTCAGTGC+CGG | - | chr4.1:16487164-16487183 | MS.gene08317:intron | 60.0% | |
| !! | GCCCTGACAGCGCTGATTCA+TGG | - | chr4.1:16486082-16486101 | MS.gene08317:intron | 60.0% |
| TCCTGGGGCAGTTCAGTGCC+GGG | - | chr4.1:16487165-16487184 | MS.gene08317:intron | 65.0% | |
| GCGTTGCAGTCGCTGGTCGG+AGG | - | chr4.1:16485958-16485977 | MS.gene08317:CDS | 70.0% | |
| ! | ACCCGGCACTGAACTGCCCC+AGG | + | chr4.1:16487169-16487188 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16485919 | 16488356 | 16485919 | ID=MS.gene08317 |
| chr4.1 | mRNA | 16485919 | 16488356 | 16485919 | ID=MS.gene08317.t1;Parent=MS.gene08317 |
| chr4.1 | exon | 16488100 | 16488356 | 16488100 | ID=MS.gene08317.t1.exon1;Parent=MS.gene08317.t1 |
| chr4.1 | CDS | 16488100 | 16488356 | 16488100 | ID=cds.MS.gene08317.t1;Parent=MS.gene08317.t1 |
| chr4.1 | exon | 16487779 | 16487881 | 16487779 | ID=MS.gene08317.t1.exon2;Parent=MS.gene08317.t1 |
| chr4.1 | CDS | 16487779 | 16487881 | 16487779 | ID=cds.MS.gene08317.t1;Parent=MS.gene08317.t1 |
| chr4.1 | exon | 16486300 | 16486461 | 16486300 | ID=MS.gene08317.t1.exon3;Parent=MS.gene08317.t1 |
| chr4.1 | CDS | 16486300 | 16486461 | 16486300 | ID=cds.MS.gene08317.t1;Parent=MS.gene08317.t1 |
| chr4.1 | exon | 16485919 | 16486089 | 16485919 | ID=MS.gene08317.t1.exon4;Parent=MS.gene08317.t1 |
| chr4.1 | CDS | 16485919 | 16486089 | 16485919 | ID=cds.MS.gene08317.t1;Parent=MS.gene08317.t1 |
| Gene Sequence |
| Protein sequence |
