Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08351.t1 | RHN42333.1 | 97.3 | 415 | 10 | 1 | 1 | 415 | 7 | 420 | 2.30E-241 | 844.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08351.t1 | Q9SIS4 | 63.9 | 404 | 132 | 6 | 1 | 392 | 1 | 402 | 2.1e-150 | 533.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08351.t1 | A0A396GP95 | 97.3 | 415 | 10 | 1 | 1 | 415 | 7 | 420 | 1.7e-241 | 844.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene08351 | MS.gene018546 | PPI |
MS.gene08351 | MS.gene64505 | PPI |
MS.gene09836 | MS.gene08351 | PPI |
MS.gene08351 | MS.gene061907 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08351.t1 | MTR_1g038810 | 68.989 | 445 | 107 | 4 | 1 | 415 | 9 | 452 | 0.0 | 617 |
MS.gene08351.t1 | MTR_1g038810 | 68.090 | 445 | 107 | 5 | 1 | 415 | 9 | 448 | 0.0 | 602 |
MS.gene08351.t1 | MTR_6g072010 | 55.263 | 342 | 131 | 2 | 55 | 376 | 47 | 386 | 9.11e-143 | 412 |
MS.gene08351.t1 | MTR_6g072010 | 55.263 | 342 | 131 | 2 | 55 | 376 | 58 | 397 | 3.14e-142 | 411 |
MS.gene08351.t1 | MTR_7g100070 | 42.432 | 403 | 192 | 8 | 2 | 377 | 11 | 400 | 3.06e-101 | 309 |
MS.gene08351.t1 | MTR_7g100070 | 42.537 | 402 | 192 | 8 | 2 | 377 | 11 | 399 | 5.98e-101 | 308 |
MS.gene08351.t1 | MTR_7g100070 | 42.432 | 403 | 192 | 8 | 2 | 377 | 51 | 440 | 1.78e-100 | 308 |
MS.gene08351.t1 | MTR_6g009260 | 44.944 | 356 | 169 | 5 | 52 | 381 | 54 | 408 | 1.78e-98 | 301 |
MS.gene08351.t1 | MTR_8g091360 | 55.417 | 240 | 101 | 2 | 140 | 376 | 315 | 551 | 7.75e-85 | 270 |
MS.gene08351.t1 | MTR_8g091360 | 51.852 | 81 | 37 | 2 | 45 | 124 | 131 | 210 | 2.12e-17 | 84.7 |
MS.gene08351.t1 | MTR_5g006820 | 53.814 | 236 | 103 | 2 | 140 | 372 | 354 | 586 | 1.36e-83 | 268 |
MS.gene08351.t1 | MTR_5g006820 | 51.852 | 81 | 36 | 2 | 46 | 124 | 84 | 163 | 2.62e-18 | 87.4 |
MS.gene08351.t1 | MTR_1g103330 | 53.279 | 244 | 108 | 2 | 132 | 372 | 307 | 547 | 1.41e-83 | 267 |
MS.gene08351.t1 | MTR_1g103330 | 53.086 | 81 | 35 | 2 | 46 | 124 | 82 | 161 | 1.03e-18 | 88.6 |
MS.gene08351.t1 | MTR_1g071680 | 51.163 | 258 | 117 | 3 | 118 | 372 | 269 | 520 | 1.69e-83 | 266 |
MS.gene08351.t1 | MTR_1g071680 | 48.864 | 88 | 40 | 2 | 37 | 124 | 79 | 161 | 2.11e-17 | 84.7 |
MS.gene08351.t1 | MTR_8g043480 | 51.464 | 239 | 109 | 3 | 140 | 374 | 45 | 280 | 2.03e-82 | 255 |
MS.gene08351.t1 | MTR_8g043480 | 51.464 | 239 | 109 | 3 | 140 | 374 | 175 | 410 | 1.57e-80 | 254 |
MS.gene08351.t1 | MTR_8g043480 | 47.945 | 73 | 37 | 1 | 52 | 124 | 8 | 79 | 2.45e-15 | 77.8 |
MS.gene08351.t1 | MTR_8g043480 | 51.464 | 239 | 109 | 3 | 140 | 374 | 240 | 475 | 3.83e-80 | 256 |
MS.gene08351.t1 | MTR_8g043480 | 47.945 | 73 | 37 | 1 | 52 | 124 | 73 | 144 | 2.68e-15 | 78.2 |
MS.gene08351.t1 | MTR_7g095260 | 53.648 | 233 | 102 | 2 | 143 | 372 | 239 | 468 | 4.82e-80 | 255 |
MS.gene08351.t1 | MTR_7g095260 | 54.930 | 71 | 31 | 1 | 54 | 124 | 40 | 109 | 2.11e-16 | 81.3 |
MS.gene08351.t1 | MTR_7g095260 | 53.648 | 233 | 102 | 2 | 143 | 372 | 291 | 520 | 7.12e-80 | 256 |
MS.gene08351.t1 | MTR_7g095260 | 54.930 | 71 | 31 | 1 | 54 | 124 | 92 | 161 | 2.58e-16 | 81.3 |
MS.gene08351.t1 | MTR_6g042240 | 50.612 | 245 | 115 | 2 | 143 | 387 | 332 | 570 | 1.17e-75 | 246 |
MS.gene08351.t1 | MTR_6g042240 | 52.113 | 71 | 33 | 1 | 55 | 125 | 59 | 128 | 1.15e-15 | 79.3 |
MS.gene08351.t1 | MTR_6g042240 | 50.612 | 245 | 115 | 2 | 143 | 387 | 372 | 610 | 1.65e-75 | 247 |
MS.gene08351.t1 | MTR_6g042240 | 52.113 | 71 | 33 | 1 | 55 | 125 | 99 | 168 | 1.45e-15 | 79.0 |
MS.gene08351.t1 | MTR_6g042240 | 50.612 | 245 | 115 | 2 | 143 | 387 | 385 | 623 | 4.87e-75 | 246 |
MS.gene08351.t1 | MTR_6g042240 | 52.113 | 71 | 33 | 1 | 55 | 125 | 112 | 181 | 1.61e-15 | 79.0 |
MS.gene08351.t1 | MTR_1g097690 | 47.925 | 265 | 129 | 4 | 136 | 397 | 347 | 605 | 6.92e-75 | 245 |
MS.gene08351.t1 | MTR_1g097690 | 42.529 | 87 | 49 | 1 | 39 | 125 | 87 | 172 | 1.39e-13 | 72.8 |
MS.gene08351.t1 | MTR_4g098850 | 45.139 | 288 | 142 | 3 | 93 | 374 | 544 | 821 | 4.29e-73 | 245 |
MS.gene08351.t1 | MTR_4g098850 | 50.262 | 191 | 92 | 1 | 184 | 374 | 2 | 189 | 1.63e-53 | 191 |
MS.gene08351.t1 | MTR_4g098850 | 38.824 | 85 | 52 | 0 | 41 | 125 | 340 | 424 | 9.87e-14 | 73.6 |
MS.gene08351.t1 | MTR_5g014090 | 45.105 | 286 | 153 | 2 | 89 | 374 | 317 | 598 | 1.98e-72 | 239 |
MS.gene08351.t1 | MTR_5g014090 | 44.330 | 97 | 49 | 2 | 41 | 133 | 93 | 188 | 3.28e-17 | 84.3 |
MS.gene08351.t1 | MTR_8g091360 | 55.782 | 147 | 62 | 1 | 140 | 283 | 315 | 461 | 3.75e-49 | 174 |
MS.gene08351.t1 | MTR_8g091360 | 51.852 | 81 | 37 | 2 | 45 | 124 | 131 | 210 | 2.00e-17 | 84.3 |
MS.gene08351.t1 | MTR_1g097690 | 51.678 | 149 | 72 | 0 | 136 | 284 | 347 | 495 | 1.30e-45 | 164 |
MS.gene08351.t1 | MTR_1g097690 | 42.529 | 87 | 49 | 1 | 39 | 125 | 87 | 172 | 1.10e-13 | 73.2 |
MS.gene08351.t1 | MTR_5g014090 | 38.660 | 194 | 118 | 1 | 89 | 282 | 317 | 509 | 5.44e-35 | 135 |
MS.gene08351.t1 | MTR_5g014090 | 44.330 | 97 | 49 | 2 | 41 | 133 | 93 | 188 | 2.58e-17 | 84.3 |
MS.gene08351.t1 | MTR_1g078100 | 27.273 | 418 | 224 | 13 | 55 | 415 | 528 | 922 | 6.29e-35 | 137 |
MS.gene08351.t1 | MTR_1g078100 | 27.273 | 418 | 224 | 13 | 55 | 415 | 259 | 653 | 6.50e-35 | 137 |
MS.gene08351.t1 | MTR_1g078100 | 27.273 | 418 | 224 | 13 | 55 | 415 | 248 | 642 | 7.72e-35 | 137 |
MS.gene08351.t1 | MTR_6g092670 | 24.784 | 464 | 244 | 14 | 19 | 400 | 499 | 939 | 5.22e-29 | 120 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08351.t1 | AT2G01900 | 63.861 | 404 | 132 | 6 | 1 | 392 | 9 | 410 | 0.0 | 533 |
MS.gene08351.t1 | AT2G01900 | 63.861 | 404 | 132 | 6 | 1 | 392 | 1 | 402 | 0.0 | 532 |
MS.gene08351.t1 | AT2G01900 | 62.376 | 404 | 129 | 7 | 1 | 392 | 1 | 393 | 0.0 | 513 |
MS.gene08351.t1 | AT2G37440 | 46.209 | 422 | 176 | 10 | 2 | 377 | 11 | 427 | 3.30e-109 | 330 |
MS.gene08351.t1 | AT2G37440 | 46.209 | 422 | 176 | 10 | 2 | 377 | 11 | 427 | 3.30e-109 | 330 |
MS.gene08351.t1 | AT2G37440 | 48.718 | 351 | 146 | 5 | 56 | 377 | 1 | 346 | 3.44e-102 | 309 |
MS.gene08351.t1 | AT5G65090 | 55.833 | 240 | 100 | 2 | 140 | 376 | 199 | 435 | 2.24e-86 | 271 |
MS.gene08351.t1 | AT5G65090 | 45.783 | 83 | 44 | 1 | 55 | 137 | 11 | 92 | 7.56e-18 | 85.9 |
MS.gene08351.t1 | AT5G65090 | 55.833 | 240 | 100 | 2 | 140 | 376 | 262 | 498 | 5.82e-86 | 271 |
MS.gene08351.t1 | AT5G65090 | 45.783 | 83 | 44 | 1 | 55 | 137 | 74 | 155 | 1.21e-17 | 85.5 |
MS.gene08351.t1 | AT5G65090 | 55.833 | 240 | 100 | 2 | 140 | 376 | 262 | 498 | 5.82e-86 | 271 |
MS.gene08351.t1 | AT5G65090 | 45.783 | 83 | 44 | 1 | 55 | 137 | 74 | 155 | 1.21e-17 | 85.5 |
MS.gene08351.t1 | AT2G32010 | 53.175 | 252 | 112 | 2 | 143 | 391 | 329 | 577 | 2.99e-85 | 271 |
MS.gene08351.t1 | AT2G32010 | 57.333 | 75 | 31 | 1 | 50 | 124 | 87 | 160 | 1.73e-19 | 91.3 |
MS.gene08351.t1 | AT2G32010 | 53.175 | 252 | 112 | 2 | 143 | 391 | 329 | 577 | 2.99e-85 | 271 |
MS.gene08351.t1 | AT2G32010 | 57.333 | 75 | 31 | 1 | 50 | 124 | 87 | 160 | 1.73e-19 | 91.3 |
MS.gene08351.t1 | AT2G32010 | 53.175 | 252 | 112 | 2 | 143 | 391 | 329 | 577 | 2.99e-85 | 271 |
MS.gene08351.t1 | AT2G32010 | 57.333 | 75 | 31 | 1 | 50 | 124 | 87 | 160 | 1.73e-19 | 91.3 |
MS.gene08351.t1 | AT2G32010 | 53.175 | 252 | 112 | 2 | 143 | 391 | 329 | 577 | 2.99e-85 | 271 |
MS.gene08351.t1 | AT2G32010 | 57.333 | 75 | 31 | 1 | 50 | 124 | 87 | 160 | 1.73e-19 | 91.3 |
MS.gene08351.t1 | AT1G05470 | 55.794 | 233 | 97 | 2 | 143 | 372 | 352 | 581 | 1.02e-84 | 271 |
MS.gene08351.t1 | AT1G05470 | 57.333 | 75 | 31 | 1 | 50 | 124 | 88 | 161 | 2.36e-19 | 90.9 |
MS.gene08351.t1 | AT1G05470 | 55.794 | 233 | 97 | 2 | 143 | 372 | 352 | 581 | 1.02e-84 | 271 |
MS.gene08351.t1 | AT1G05470 | 57.333 | 75 | 31 | 1 | 50 | 124 | 88 | 161 | 2.36e-19 | 90.9 |
MS.gene08351.t1 | AT5G04980 | 52.521 | 238 | 108 | 2 | 140 | 374 | 157 | 392 | 1.24e-81 | 256 |
MS.gene08351.t1 | AT5G04980 | 52.521 | 238 | 108 | 2 | 140 | 374 | 192 | 427 | 2.37e-81 | 257 |
MS.gene08351.t1 | AT5G04980 | 50.746 | 67 | 32 | 1 | 55 | 121 | 10 | 75 | 2.03e-13 | 72.0 |
MS.gene08351.t1 | AT5G04980 | 52.521 | 238 | 108 | 2 | 140 | 374 | 192 | 427 | 2.37e-81 | 257 |
MS.gene08351.t1 | AT5G04980 | 50.746 | 67 | 32 | 1 | 55 | 121 | 10 | 75 | 2.03e-13 | 72.0 |
MS.gene08351.t1 | AT5G04980 | 52.521 | 238 | 108 | 2 | 140 | 374 | 221 | 456 | 2.62e-81 | 258 |
MS.gene08351.t1 | AT5G04980 | 50.746 | 67 | 32 | 1 | 55 | 121 | 39 | 104 | 2.39e-13 | 72.0 |
MS.gene08351.t1 | AT3G63240 | 52.988 | 251 | 107 | 4 | 126 | 372 | 267 | 510 | 4.56e-81 | 259 |
MS.gene08351.t1 | AT3G63240 | 55.714 | 70 | 30 | 1 | 55 | 124 | 89 | 157 | 1.77e-16 | 81.6 |
MS.gene08351.t1 | AT3G63240 | 52.988 | 251 | 107 | 4 | 126 | 372 | 267 | 510 | 4.56e-81 | 259 |
MS.gene08351.t1 | AT3G63240 | 55.714 | 70 | 30 | 1 | 55 | 124 | 89 | 157 | 1.77e-16 | 81.6 |
MS.gene08351.t1 | AT1G34120 | 48.988 | 247 | 119 | 2 | 143 | 387 | 185 | 426 | 2.24e-74 | 239 |
MS.gene08351.t1 | AT1G34120 | 48.988 | 247 | 119 | 2 | 143 | 387 | 336 | 577 | 2.42e-72 | 238 |
MS.gene08351.t1 | AT1G34120 | 40.000 | 100 | 59 | 1 | 39 | 138 | 86 | 184 | 2.26e-14 | 75.5 |
MS.gene08351.t1 | AT1G34120 | 48.988 | 247 | 119 | 2 | 143 | 387 | 340 | 581 | 3.29e-72 | 237 |
MS.gene08351.t1 | AT1G34120 | 40.000 | 100 | 59 | 1 | 39 | 138 | 90 | 188 | 2.15e-14 | 75.5 |
MS.gene08351.t1 | AT4G18010 | 50.862 | 232 | 111 | 1 | 143 | 374 | 392 | 620 | 6.07e-72 | 238 |
MS.gene08351.t1 | AT4G18010 | 43.158 | 95 | 53 | 1 | 41 | 135 | 98 | 191 | 2.58e-17 | 84.7 |
MS.gene08351.t1 | AT1G34120 | 48.988 | 247 | 118 | 3 | 143 | 387 | 340 | 580 | 1.69e-70 | 233 |
MS.gene08351.t1 | AT1G34120 | 40.000 | 100 | 59 | 1 | 39 | 138 | 90 | 188 | 2.23e-14 | 75.5 |
MS.gene08351.t1 | AT1G71710 | 45.122 | 246 | 130 | 2 | 143 | 388 | 402 | 642 | 4.40e-68 | 228 |
MS.gene08351.t1 | AT1G71710 | 47.126 | 87 | 45 | 1 | 39 | 125 | 104 | 189 | 3.22e-18 | 87.4 |
MS.gene08351.t1 | AT1G71710 | 45.122 | 246 | 130 | 2 | 143 | 388 | 411 | 651 | 5.23e-68 | 228 |
MS.gene08351.t1 | AT1G71710 | 47.126 | 87 | 45 | 1 | 39 | 125 | 113 | 198 | 3.43e-18 | 87.4 |
MS.gene08351.t1 | AT4G18010 | 49.223 | 193 | 95 | 1 | 143 | 335 | 392 | 581 | 9.32e-54 | 188 |
MS.gene08351.t1 | AT4G18010 | 43.158 | 95 | 53 | 1 | 41 | 135 | 98 | 191 | 2.52e-17 | 84.3 |
MS.gene08351.t1 | AT1G34120 | 48.921 | 139 | 69 | 1 | 143 | 279 | 336 | 474 | 1.17e-36 | 140 |
MS.gene08351.t1 | AT1G34120 | 40.000 | 100 | 59 | 1 | 39 | 138 | 86 | 184 | 2.02e-14 | 75.1 |
MS.gene08351.t1 | AT1G65580 | 27.751 | 418 | 221 | 14 | 55 | 412 | 273 | 669 | 1.26e-35 | 139 |
MS.gene08351.t1 | AT1G65580 | 27.578 | 417 | 223 | 13 | 55 | 412 | 539 | 935 | 1.75e-35 | 139 |
MS.gene08351.t1 | AT1G05630 | 26.884 | 398 | 214 | 10 | 55 | 398 | 572 | 946 | 1.43e-32 | 130 |
MS.gene08351.t1 | AT1G05630 | 27.726 | 321 | 179 | 7 | 55 | 341 | 572 | 873 | 4.29e-32 | 129 |
MS.gene08351.t1 | AT2G31830 | 25.537 | 419 | 231 | 11 | 55 | 413 | 581 | 978 | 5.81e-31 | 126 |
MS.gene08351.t1 | AT2G31830 | 25.537 | 419 | 231 | 11 | 55 | 413 | 581 | 978 | 5.87e-31 | 126 |
MS.gene08351.t1 | AT2G43900 | 26.708 | 322 | 182 | 8 | 55 | 341 | 577 | 879 | 2.72e-29 | 121 |
MS.gene08351.t1 | AT2G43900 | 24.292 | 424 | 235 | 11 | 55 | 415 | 577 | 977 | 3.05e-29 | 121 |
MS.gene08351.t1 | AT2G31830 | 27.103 | 321 | 181 | 7 | 55 | 341 | 581 | 882 | 6.72e-29 | 120 |
MS.gene08351.t1 | AT1G47510 | 31.373 | 204 | 111 | 7 | 171 | 366 | 81 | 263 | 6.09e-19 | 86.7 |
MS.gene08351.t1 | AT1G47510 | 31.373 | 204 | 111 | 7 | 171 | 366 | 143 | 325 | 1.68e-18 | 86.3 |
MS.gene08351.t1 | AT1G05630 | 28.495 | 186 | 112 | 4 | 55 | 233 | 572 | 743 | 9.29e-17 | 83.2 |
MS.gene08351.t1 | AT1G05630 | 28.796 | 191 | 106 | 5 | 229 | 398 | 799 | 980 | 5.67e-12 | 68.2 |
MS.gene08351.t1 | AT1G47510 | 34.426 | 122 | 65 | 3 | 252 | 366 | 149 | 262 | 2.20e-11 | 64.7 |
Find 77 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTATGGAATTCCATTTAT+TGG | 0.159218 | 4.1:-17006295 | None:intergenic |
CCAAATTCGGATATATATTA+TGG | 0.203896 | 4.1:+17008032 | MS.gene08351:CDS |
ACAATGAAATTTCCAATAAA+TGG | 0.214880 | 4.1:+17006283 | MS.gene08351:CDS |
CCATAATATATATCCGAATT+TGG | 0.241692 | 4.1:-17008032 | None:intergenic |
CTTGTATTTGTGTTTGTCCT+TGG | 0.283816 | 4.1:-17005885 | None:intergenic |
GTGTGTAGCCATCTAGCTTC+AGG | 0.308501 | 4.1:+17007066 | MS.gene08351:CDS |
ACGCTTACTTGTAGAGAAAA+AGG | 0.326969 | 4.1:+17007806 | MS.gene08351:CDS |
TGCTTGGAGATTTAAATTAT+AGG | 0.331581 | 4.1:+17007760 | MS.gene08351:CDS |
TCTAAAAGCTTCAAATGTAT+TGG | 0.332943 | 4.1:+17006251 | MS.gene08351:CDS |
TCATGGTCTAGAATATTTCT+TGG | 0.341551 | 4.1:-17007180 | None:intergenic |
AATCAGAAAAGCTTTGAATA+AGG | 0.342999 | 4.1:+17006314 | MS.gene08351:CDS |
TGTTTGTCCTTGGGATGATT+AGG | 0.356217 | 4.1:-17005875 | None:intergenic |
CTAAAAGCTTCAAATGTATT+GGG | 0.357957 | 4.1:+17006252 | MS.gene08351:CDS |
TGTGGCATAATGAGATGTTT+AGG | 0.368843 | 4.1:+17006483 | MS.gene08351:CDS |
TTGTATTTGTGTTTGTCCTT+GGG | 0.382205 | 4.1:-17005884 | None:intergenic |
CTACAAATATTGTCCAAATT+CGG | 0.392628 | 4.1:+17008019 | MS.gene08351:CDS |
TCCTGTGACATCTATGTACT+TGG | 0.396131 | 4.1:+17006100 | MS.gene08351:CDS |
TTAGGTGTGATAGAATAGTA+TGG | 0.408260 | 4.1:+17008458 | MS.gene08351:intron |
CGAATTTGGACAATATTTGT+AGG | 0.419036 | 4.1:-17008018 | None:intergenic |
TTTAAACGTAGATGATTTGT+TGG | 0.420397 | 4.1:+17006063 | MS.gene08351:CDS |
AATCAAGACTATCAGATCAT+AGG | 0.423602 | 4.1:+17008521 | MS.gene08351:CDS |
GTAGAAAACAATCAAGCTTC+CGG | 0.425807 | 4.1:+17008677 | MS.gene08351:CDS |
TGTGTAGCCATCTAGCTTCA+GGG | 0.426156 | 4.1:+17007067 | MS.gene08351:CDS |
TAGGTAGGAGCAAATTTGAT+TGG | 0.432972 | 4.1:-17007999 | None:intergenic |
TTCCTTATTAGAAAATGATC+AGG | 0.438935 | 4.1:+17007836 | MS.gene08351:CDS |
TCTACGTTTAAATCTTCATC+TGG | 0.441644 | 4.1:-17006052 | None:intergenic |
AGTAAGCGTGTCGTTTCCTC+TGG | 0.445903 | 4.1:-17007792 | None:intergenic |
ATGAATGGCAACAATTTAAG+AGG | 0.447227 | 4.1:+17007963 | MS.gene08351:CDS |
ATCAGATCATAGGCCTGTTA+AGG | 0.461445 | 4.1:+17008531 | MS.gene08351:CDS |
TTGTTAATTTCTTACCAAGC+TGG | 0.469234 | 4.1:-17008098 | None:intergenic |
TAACATGTGGCCTACATTAG+TGG | 0.470394 | 4.1:+17005739 | None:intergenic |
TGCAGTCATGTAATATTGCT+TGG | 0.474593 | 4.1:+17007744 | MS.gene08351:intron |
ACTGATGGTGAATTTACAAC+CGG | 0.475273 | 4.1:-17008696 | None:intergenic |
AGGATAATCTGCTATGAAGT+TGG | 0.477080 | 4.1:-17005795 | None:intergenic |
ATGTATAATTAGCAAACAAA+TGG | 0.477259 | 4.1:+17006383 | MS.gene08351:CDS |
CAACCTATGCATGACACACT+TGG | 0.485601 | 4.1:-17006462 | None:intergenic |
TTTGTTAGTACATGGAACAT+AGG | 0.487262 | 4.1:+17006019 | MS.gene08351:CDS |
TTGGAATATTCATATCTGTA+TGG | 0.499275 | 4.1:+17006406 | MS.gene08351:CDS |
TTTGGACAATATTTGTAGGT+AGG | 0.503958 | 4.1:-17008014 | None:intergenic |
TGTGATAGAATAGTATGGTA+TGG | 0.509257 | 4.1:+17008463 | MS.gene08351:CDS |
AAGATACTCAAGAAGCGACT+TGG | 0.509328 | 4.1:+17005767 | MS.gene08351:CDS |
TTTGTTTGCTAATTATACAT+TGG | 0.521389 | 4.1:-17006380 | None:intergenic |
ACACTTGGATGTTGAATGAA+TGG | 0.524578 | 4.1:-17006447 | None:intergenic |
AAACGTAGATGATTTGTTGG+AGG | 0.529826 | 4.1:+17006066 | MS.gene08351:CDS |
TTTCTTGGCAATTCAAACAA+AGG | 0.536236 | 4.1:-17007165 | None:intergenic |
CTAATGATGGAGTTAATGAA+TGG | 0.537149 | 4.1:+17007948 | MS.gene08351:CDS |
AAGAAGGGGATGAGAAGTGT+AGG | 0.538109 | 4.1:+17007094 | MS.gene08351:CDS |
ATAATTAGCAAACAAATGGT+TGG | 0.541121 | 4.1:+17006387 | MS.gene08351:CDS |
AGAATAGTATGGTATGGAAA+GGG | 0.542462 | 4.1:+17008469 | MS.gene08351:CDS |
TTAGTACATGGAACATAGGT+GGG | 0.544468 | 4.1:+17006023 | MS.gene08351:CDS |
TATTATGGTTGCTGTTGTCA+TGG | 0.545796 | 4.1:+17008047 | MS.gene08351:CDS |
AATTCAAACAAAGGACCTCT+AGG | 0.548525 | 4.1:-17007156 | None:intergenic |
TAGAATAGTATGGTATGGAA+AGG | 0.552813 | 4.1:+17008468 | MS.gene08351:CDS |
AATGGGAATGAAGCTAATGA+TGG | 0.553046 | 4.1:+17007935 | MS.gene08351:intron |
GTTAGTACATGGAACATAGG+TGG | 0.556986 | 4.1:+17006022 | MS.gene08351:CDS |
ATCTTATTAGCCACTAATGT+AGG | 0.560756 | 4.1:-17005749 | None:intergenic |
AGAAATAAGGGTTTCATCTG+AGG | 0.563849 | 4.1:+17008567 | MS.gene08351:CDS |
AAAAGAGGCGAGCACCAGCT+TGG | 0.572374 | 4.1:+17008084 | MS.gene08351:CDS |
TCTGTGGTAGAAACTTCAAA+AGG | 0.575675 | 4.1:-17008643 | None:intergenic |
CATCCAAGTGTGTCATGCAT+AGG | 0.576317 | 4.1:+17006459 | MS.gene08351:CDS |
ATGGCAACAATTTAAGAGGA+TGG | 0.577966 | 4.1:+17007967 | MS.gene08351:CDS |
AATTTAAGAGGATGGCATGA+AGG | 0.581584 | 4.1:+17007975 | MS.gene08351:CDS |
GTGTAGCCATCTAGCTTCAG+GGG | 0.595621 | 4.1:+17007068 | MS.gene08351:CDS |
CCCAAGTACATAGATGTCAC+AGG | 0.603987 | 4.1:-17006101 | None:intergenic |
ACATTGGAAATCATCATGTG+TGG | 0.610903 | 4.1:-17006364 | None:intergenic |
AACAAAGGTTCATCATAACT+AGG | 0.611095 | 4.1:-17005815 | None:intergenic |
TGAAACAACTTGAGTACACA+AGG | 0.618581 | 4.1:+17008494 | MS.gene08351:CDS |
CCTGTGACATCTATGTACTT+GGG | 0.620340 | 4.1:+17006101 | MS.gene08351:CDS |
AATGAGATGTTTAGGAAACA+AGG | 0.621139 | 4.1:+17006491 | MS.gene08351:CDS |
AACAGTTCCTAATCATCCCA+AGG | 0.629549 | 4.1:+17005868 | MS.gene08351:CDS |
TCTACATACAAGTTCATCTG+TGG | 0.630406 | 4.1:-17008659 | None:intergenic |
ATGTCTGCAAAATTCAACAA+AGG | 0.633351 | 4.1:-17005830 | None:intergenic |
TATTCATATCTGTATGGACA+AGG | 0.643166 | 4.1:+17006412 | MS.gene08351:CDS |
TCTAGGACTAGCTTTCCTAG+AGG | 0.647556 | 4.1:+17007141 | MS.gene08351:CDS |
TTATAGGATATCTCTTCCAG+AGG | 0.665637 | 4.1:+17007776 | MS.gene08351:CDS |
AGTGTGTCATGCATAGGTTG+TGG | 0.684284 | 4.1:+17006465 | MS.gene08351:CDS |
TGTAGCCATCTAGCTTCAGG+GGG | 0.696209 | 4.1:+17007069 | MS.gene08351:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGATTAACATATTAATATTT+TGG | - | chr4.1:17007425-17007444 | None:intergenic | 10.0% |
!!! | TGTTTGTTAATCTTAATTTT+AGG | + | chr4.1:17008440-17008459 | MS.gene08351:intron | 15.0% |
!!! | TTAACATATTAATATTTTGG+AGG | - | chr4.1:17007422-17007441 | None:intergenic | 15.0% |
!!! | TTTAAAGAGAACTTTTTTAA+TGG | - | chr4.1:17007887-17007906 | None:intergenic | 15.0% |
!!! | TTTGTTTATTTTTCTTGTAA+AGG | + | chr4.1:17005993-17006012 | MS.gene08351:intron | 15.0% |
!!! | TTTTCATGATTTATTATGAA+AGG | - | chr4.1:17007295-17007314 | None:intergenic | 15.0% |
!! | AAAATATCAAGCTTGAAATT+TGG | + | chr4.1:17006745-17006764 | MS.gene08351:intron | 20.0% |
!! | ACAATATTAGAAATGTTAAG+AGG | - | chr4.1:17005973-17005992 | None:intergenic | 20.0% |
!! | ACAATGAAATTTCCAATAAA+TGG | + | chr4.1:17006283-17006302 | MS.gene08351:CDS | 20.0% |
!! | ACATTATGTGATTAATTATG+TGG | - | chr4.1:17007720-17007739 | None:intergenic | 20.0% |
!! | AGTAGTATTAGAAATCAAAT+TGG | - | chr4.1:17007228-17007247 | None:intergenic | 20.0% |
!! | ATATTAATTTCATATGGAGT+TGG | - | chr4.1:17006551-17006570 | None:intergenic | 20.0% |
!! | ATGTATAATTAGCAAACAAA+TGG | + | chr4.1:17006383-17006402 | MS.gene08351:CDS | 20.0% |
!! | ATTATTAAATTAAACGCAAG+AGG | - | chr4.1:17007266-17007285 | None:intergenic | 20.0% |
!! | CATAATAAATCATGAAAACA+AGG | + | chr4.1:17007297-17007316 | MS.gene08351:intron | 20.0% |
!! | TTATTAAATTAAACGCAAGA+GGG | - | chr4.1:17007265-17007284 | None:intergenic | 20.0% |
!!! | AATTTTTTCTGCAGAAATAA+GGG | + | chr4.1:17008555-17008574 | MS.gene08351:CDS | 20.0% |
!!! | ATATTTACAACGTTTTTCTT+TGG | - | chr4.1:17007555-17007574 | None:intergenic | 20.0% |
!!! | ATTCTAAACATGTTTTTCTA+TGG | - | chr4.1:17006160-17006179 | None:intergenic | 20.0% |
!!! | TTTGTTTGCTAATTATACAT+TGG | - | chr4.1:17006383-17006402 | None:intergenic | 20.0% |
!!! | TTTTAGTCTTTTTAGACTAT+TGG | - | chr4.1:17006942-17006961 | None:intergenic | 20.0% |
! | AATGTCATATATGTTTGTGT+CGG | - | chr4.1:17008167-17008186 | None:intergenic | 25.0% |
! | AGAATATTGATCATTAGTGA+CGG | - | chr4.1:17007372-17007391 | None:intergenic | 25.0% |
! | ATAATTAGCAAACAAATGGT+TGG | + | chr4.1:17006387-17006406 | MS.gene08351:CDS | 25.0% |
! | ATTTCAGCCAACAAAATATT+TGG | - | chr4.1:17007324-17007343 | None:intergenic | 25.0% |
! | CCAAATTCGGATATATATTA+TGG | + | chr4.1:17008032-17008051 | MS.gene08351:CDS | 25.0% |
! | CCATAATATATATCCGAATT+TGG | - | chr4.1:17008035-17008054 | None:intergenic | 25.0% |
! | CTAAAAGCTTCAAATGTATT+GGG | + | chr4.1:17006252-17006271 | MS.gene08351:CDS | 25.0% |
! | CTAATTTAATTGCATCCAAT+GGG | + | chr4.1:17007918-17007937 | MS.gene08351:intron | 25.0% |
! | CTACAAATATTGTCCAAATT+CGG | + | chr4.1:17008019-17008038 | MS.gene08351:CDS | 25.0% |
! | CTCATTAATCAATTAGTATG+TGG | - | chr4.1:17007633-17007652 | None:intergenic | 25.0% |
! | CTGGTAGTATATAATATAGT+GGG | + | chr4.1:17007507-17007526 | MS.gene08351:intron | 25.0% |
! | GAAAAAAGATAGTAGAAAAG+AGG | + | chr4.1:17008069-17008088 | MS.gene08351:CDS | 25.0% |
! | GATTATGGAATTCCATTTAT+TGG | - | chr4.1:17006298-17006317 | None:intergenic | 25.0% |
! | GTATTAGAAATCAAATTGGA+CGG | - | chr4.1:17007224-17007243 | None:intergenic | 25.0% |
! | TCACTTTATAAGAATTTCGT+CGG | + | chr4.1:17008310-17008329 | MS.gene08351:intron | 25.0% |
! | TCTAAAAGCTTCAAATGTAT+TGG | + | chr4.1:17006251-17006270 | MS.gene08351:CDS | 25.0% |
! | TCTAATTTAATTGCATCCAA+TGG | + | chr4.1:17007917-17007936 | MS.gene08351:intron | 25.0% |
! | TCTGGTAGTATATAATATAG+TGG | + | chr4.1:17007506-17007525 | MS.gene08351:intron | 25.0% |
! | TCTTAAACTATTATCGATGT+CGG | - | chr4.1:17008202-17008221 | None:intergenic | 25.0% |
! | TGCTTGGAGATTTAAATTAT+AGG | + | chr4.1:17007760-17007779 | MS.gene08351:CDS | 25.0% |
! | TTCCTTATTAGAAAATGATC+AGG | + | chr4.1:17007836-17007855 | MS.gene08351:CDS | 25.0% |
! | TTGGAATATTCATATCTGTA+TGG | + | chr4.1:17006406-17006425 | MS.gene08351:CDS | 25.0% |
!! | AAAGGATTTTTGTTAGTACA+TGG | + | chr4.1:17006011-17006030 | MS.gene08351:intron | 25.0% |
!! | AACCTGATCATTTTCTAATA+AGG | - | chr4.1:17007841-17007860 | None:intergenic | 25.0% |
!! | AAGATTTTCAGTTAACCAAT+GGG | - | chr4.1:17006885-17006904 | None:intergenic | 25.0% |
!! | ATTCAAAGCTTTTCTGATTA+TGG | - | chr4.1:17006313-17006332 | None:intergenic | 25.0% |
!! | TAAAAGTGTGTAGTATAATG+TGG | - | chr4.1:17008349-17008368 | None:intergenic | 25.0% |
!! | TAAGATTTTCAGTTAACCAA+TGG | - | chr4.1:17006886-17006905 | None:intergenic | 25.0% |
!! | TATACTACACACTTTTAACA+TGG | + | chr4.1:17008352-17008371 | MS.gene08351:intron | 25.0% |
!! | TTCAAATTGTTACTTACTCA+TGG | - | chr4.1:17007200-17007219 | None:intergenic | 25.0% |
!! | TTTAAACGTAGATGATTTGT+TGG | + | chr4.1:17006063-17006082 | MS.gene08351:CDS | 25.0% |
!!! | AATACATTTGAAGCTTTTAG+AGG | - | chr4.1:17006252-17006271 | None:intergenic | 25.0% |
!!! | AATCAGAAAAGCTTTGAATA+AGG | + | chr4.1:17006314-17006333 | MS.gene08351:CDS | 25.0% |
!!! | ATGTTGCTGAAATTTTTTCT+AGG | + | chr4.1:17007124-17007143 | MS.gene08351:CDS | 25.0% |
!!! | CAATTTTTTCTGCAGAAATA+AGG | + | chr4.1:17008554-17008573 | MS.gene08351:CDS | 25.0% |
!!! | GTTCTGTTTTATTACAATTC+AGG | + | chr4.1:17006211-17006230 | MS.gene08351:intron | 25.0% |
AACAAAGGTTCATCATAACT+AGG | - | chr4.1:17005818-17005837 | None:intergenic | 30.0% | |
AATCAAGACTATCAGATCAT+AGG | + | chr4.1:17008521-17008540 | MS.gene08351:CDS | 30.0% | |
AATGAGATGTTTAGGAAACA+AGG | + | chr4.1:17006491-17006510 | MS.gene08351:CDS | 30.0% | |
ACAATAAACAGAAATCTGGT+TGG | + | chr4.1:17008287-17008306 | MS.gene08351:intron | 30.0% | |
ACTAAAATCATGCATCTCAT+TGG | + | chr4.1:17006955-17006974 | MS.gene08351:intron | 30.0% | |
AGAATAGTATGGTATGGAAA+GGG | + | chr4.1:17008469-17008488 | MS.gene08351:CDS | 30.0% | |
AGTGATATATGACATATGTG+AGG | - | chr4.1:17006597-17006616 | None:intergenic | 30.0% | |
ATATGACATATGTGAGGTTA+TGG | - | chr4.1:17006591-17006610 | None:intergenic | 30.0% | |
ATCTTATTAGCCACTAATGT+AGG | - | chr4.1:17005752-17005771 | None:intergenic | 30.0% | |
ATGAATGGCAACAATTTAAG+AGG | + | chr4.1:17007963-17007982 | MS.gene08351:CDS | 30.0% | |
ATGTCTGCAAAATTCAACAA+AGG | - | chr4.1:17005833-17005852 | None:intergenic | 30.0% | |
CACTTTATAAGAATTTCGTC+GGG | + | chr4.1:17008311-17008330 | MS.gene08351:intron | 30.0% | |
CGAATTTGGACAATATTTGT+AGG | - | chr4.1:17008021-17008040 | None:intergenic | 30.0% | |
TAGAATAGTATGGTATGGAA+AGG | + | chr4.1:17008468-17008487 | MS.gene08351:CDS | 30.0% | |
TAGGACAATAAACAGAAATC+TGG | + | chr4.1:17008283-17008302 | MS.gene08351:intron | 30.0% | |
TATACTACCAGAAAACAGAT+AGG | - | chr4.1:17007498-17007517 | None:intergenic | 30.0% | |
TATGGTAGCTATACAAAACA+TGG | - | chr4.1:17006142-17006161 | None:intergenic | 30.0% | |
TATTCATATCTGTATGGACA+AGG | + | chr4.1:17006412-17006431 | MS.gene08351:CDS | 30.0% | |
TCTACGTTTAAATCTTCATC+TGG | - | chr4.1:17006055-17006074 | None:intergenic | 30.0% | |
TGATCAATATTCTCCAACTT+TGG | + | chr4.1:17007379-17007398 | MS.gene08351:intron | 30.0% | |
TGTGATAGAATAGTATGGTA+TGG | + | chr4.1:17008463-17008482 | MS.gene08351:CDS | 30.0% | |
TTAGGTGTGATAGAATAGTA+TGG | + | chr4.1:17008458-17008477 | MS.gene08351:intron | 30.0% | |
TTGTATTTGTGTTTGTCCTT+GGG | - | chr4.1:17005887-17005906 | None:intergenic | 30.0% | |
TTGTTAATTTCTTACCAAGC+TGG | - | chr4.1:17008101-17008120 | None:intergenic | 30.0% | |
TTTCTTGGCAATTCAAACAA+AGG | - | chr4.1:17007168-17007187 | None:intergenic | 30.0% | |
TTTGGACAATATTTGTAGGT+AGG | - | chr4.1:17008017-17008036 | None:intergenic | 30.0% | |
TTTGTTAGTACATGGAACAT+AGG | + | chr4.1:17006019-17006038 | MS.gene08351:CDS | 30.0% | |
! | ACAAGGTCCAAATATTTTGT+TGG | + | chr4.1:17007314-17007333 | MS.gene08351:intron | 30.0% |
! | ATGGAGTTGGTTATAGTTAT+AGG | - | chr4.1:17006538-17006557 | None:intergenic | 30.0% |
! | CTAATGATGGAGTTAATGAA+TGG | + | chr4.1:17007948-17007967 | MS.gene08351:CDS | 30.0% |
! | TCATGGTCTAGAATATTTCT+TGG | - | chr4.1:17007183-17007202 | None:intergenic | 30.0% |
!! | TAGTATATAATATAGTGGGC+CGG | + | chr4.1:17007511-17007530 | MS.gene08351:intron | 30.0% |
!! | TCTACACCAATTAATTTGCA+GGG | + | chr4.1:17006997-17007016 | MS.gene08351:intron | 30.0% |
!! | TTATAGGCTTATAGCCTTAT+AGG | - | chr4.1:17006522-17006541 | None:intergenic | 30.0% |
!! | TTCTACACCAATTAATTTGC+AGG | + | chr4.1:17006996-17007015 | MS.gene08351:intron | 30.0% |
!! | TTGTACACCAATTAATTTGC+AGG | + | chr4.1:17006907-17006926 | MS.gene08351:intron | 30.0% |
!!! | TTTGGAGGCATTTTTTCTAT+GGG | - | chr4.1:17007407-17007426 | None:intergenic | 30.0% |
!!! | TTTTGGAGGCATTTTTTCTA+TGG | - | chr4.1:17007408-17007427 | None:intergenic | 30.0% |
AATGGGAATGAAGCTAATGA+TGG | + | chr4.1:17007935-17007954 | MS.gene08351:intron | 35.0% | |
AATTCAAACAAAGGACCTCT+AGG | - | chr4.1:17007159-17007178 | None:intergenic | 35.0% | |
AATTTAAGAGGATGGCATGA+AGG | + | chr4.1:17007975-17007994 | MS.gene08351:CDS | 35.0% | |
ACACTTGGATGTTGAATGAA+TGG | - | chr4.1:17006450-17006469 | None:intergenic | 35.0% | |
ACAGAACCCTGCAAATTAAT+TGG | - | chr4.1:17007006-17007025 | None:intergenic | 35.0% | |
ACATTGGAAATCATCATGTG+TGG | - | chr4.1:17006367-17006386 | None:intergenic | 35.0% | |
ACGCTTACTTGTAGAGAAAA+AGG | + | chr4.1:17007806-17007825 | MS.gene08351:CDS | 35.0% | |
ACTTGTAGAGAAAAAGGACT+GGG | + | chr4.1:17007812-17007831 | MS.gene08351:CDS | 35.0% | |
AGAAATAAGGGTTTCATCTG+AGG | + | chr4.1:17008567-17008586 | MS.gene08351:CDS | 35.0% | |
AGGATAATCTGCTATGAAGT+TGG | - | chr4.1:17005798-17005817 | None:intergenic | 35.0% | |
ATCTTCTGATCACTAGTACT+TGG | + | chr4.1:17005925-17005944 | MS.gene08351:intron | 35.0% | |
ATGGCAACAATTTAAGAGGA+TGG | + | chr4.1:17007967-17007986 | MS.gene08351:CDS | 35.0% | |
ATGTGTGTGATTGTTCTTAC+CGG | - | chr4.1:17006642-17006661 | None:intergenic | 35.0% | |
CTATACAAAACATGGATCAG+TGG | - | chr4.1:17006134-17006153 | None:intergenic | 35.0% | |
CTTGTATTTGTGTTTGTCCT+TGG | - | chr4.1:17005888-17005907 | None:intergenic | 35.0% | |
GCAGAAAAAATTGCCTTAAC+AGG | - | chr4.1:17008547-17008566 | None:intergenic | 35.0% | |
GCAGAAACCTGCAAATTAAT+TGG | - | chr4.1:17006917-17006936 | None:intergenic | 35.0% | |
GTAACTTTCTATTTACGCAC+CGG | - | chr4.1:17007533-17007552 | None:intergenic | 35.0% | |
GTAGAAAACAATCAAGCTTC+CGG | + | chr4.1:17008677-17008696 | MS.gene08351:CDS | 35.0% | |
TACTTGTAGAGAAAAAGGAC+TGG | + | chr4.1:17007811-17007830 | MS.gene08351:CDS | 35.0% | |
TAGGTAGGAGCAAATTTGAT+TGG | - | chr4.1:17008002-17008021 | None:intergenic | 35.0% | |
TCACTTGTCAACATTCGATT+TGG | + | chr4.1:17006612-17006631 | MS.gene08351:intron | 35.0% | |
TCTACATACAAGTTCATCTG+TGG | - | chr4.1:17008662-17008681 | None:intergenic | 35.0% | |
TCTGTGGTAGAAACTTCAAA+AGG | - | chr4.1:17008646-17008665 | None:intergenic | 35.0% | |
TGAAACAACTTGAGTACACA+AGG | + | chr4.1:17008494-17008513 | MS.gene08351:CDS | 35.0% | |
TGCAGTCATGTAATATTGCT+TGG | + | chr4.1:17007744-17007763 | MS.gene08351:intron | 35.0% | |
TGTGGCATAATGAGATGTTT+AGG | + | chr4.1:17006483-17006502 | MS.gene08351:CDS | 35.0% | |
TTAGTACATGGAACATAGGT+GGG | + | chr4.1:17006023-17006042 | MS.gene08351:CDS | 35.0% | |
TTATAGGATATCTCTTCCAG+AGG | + | chr4.1:17007776-17007795 | MS.gene08351:CDS | 35.0% | |
! | ATCATTAGCTTCATTCCCAT+TGG | - | chr4.1:17007936-17007955 | None:intergenic | 35.0% |
! | TATTATGGTTGCTGTTGTCA+TGG | + | chr4.1:17008047-17008066 | MS.gene08351:CDS | 35.0% |
!! | AAACGTAGATGATTTGTTGG+AGG | + | chr4.1:17006066-17006085 | MS.gene08351:CDS | 35.0% |
!! | AAAGTGTCCTATCTGTTTTC+TGG | + | chr4.1:17007488-17007507 | MS.gene08351:intron | 35.0% |
!! | TTTTAAAAGGTCGACGTTGA+CGG | - | chr4.1:17006836-17006855 | None:intergenic | 35.0% |
!!! | GACTATTGGCTGCTTTTAAA+AGG | - | chr4.1:17006849-17006868 | None:intergenic | 35.0% |
!!! | GATGCAAGGTTTTAGACTAT+TGG | - | chr4.1:17006863-17006882 | None:intergenic | 35.0% |
!!! | TTGGAGGCATTTTTTCTATG+GGG | - | chr4.1:17007406-17007425 | None:intergenic | 35.0% |
AACAGTTCCTAATCATCCCA+AGG | + | chr4.1:17005868-17005887 | MS.gene08351:CDS | 40.0% | |
AAGAATTTCGTCGGGAAATC+TGG | + | chr4.1:17008319-17008338 | MS.gene08351:intron | 40.0% | |
AAGATACTCAAGAAGCGACT+TGG | + | chr4.1:17005767-17005786 | MS.gene08351:CDS | 40.0% | |
ATCAGATCATAGGCCTGTTA+AGG | + | chr4.1:17008531-17008550 | MS.gene08351:CDS | 40.0% | |
CAATGTAACAACCACTGATG+TGG | - | chr4.1:17006676-17006695 | None:intergenic | 40.0% | |
CCTGTGACATCTATGTACTT+GGG | + | chr4.1:17006101-17006120 | MS.gene08351:CDS | 40.0% | |
GAAACAAGGTGAGACCTATA+AGG | + | chr4.1:17006505-17006524 | MS.gene08351:intron | 40.0% | |
GTTAGTACATGGAACATAGG+TGG | + | chr4.1:17006022-17006041 | MS.gene08351:CDS | 40.0% | |
TCATGCAGTAAGCACATTAG+TGG | - | chr4.1:17006781-17006800 | None:intergenic | 40.0% | |
TCCTGTGACATCTATGTACT+TGG | + | chr4.1:17006100-17006119 | MS.gene08351:CDS | 40.0% | |
TGTATGAGTCAGTGTCATGT+CGG | + | chr4.1:17008244-17008263 | MS.gene08351:intron | 40.0% | |
TGTTTGTCCTTGGGATGATT+AGG | - | chr4.1:17005878-17005897 | None:intergenic | 40.0% | |
! | TCTAAAACCTTGCATCCCAT+TGG | + | chr4.1:17006867-17006886 | MS.gene08351:intron | 40.0% |
! | TTTTCTATGGGGACCAAAGT+TGG | - | chr4.1:17007395-17007414 | None:intergenic | 40.0% |
!! | CAACATTCGATTTGGATTGC+CGG | + | chr4.1:17006620-17006639 | MS.gene08351:intron | 40.0% |
AGTGTGTCATGCATAGGTTG+TGG | + | chr4.1:17006465-17006484 | MS.gene08351:CDS | 45.0% | |
ATTTCGTCGGGAAATCTGGT+TGG | + | chr4.1:17008323-17008342 | MS.gene08351:intron | 45.0% | |
CAACCTATGCATGACACACT+TGG | - | chr4.1:17006465-17006484 | None:intergenic | 45.0% | |
CAGTTAACCAATGGGATGCA+AGG | - | chr4.1:17006877-17006896 | None:intergenic | 45.0% | |
CATCCAAGTGTGTCATGCAT+AGG | + | chr4.1:17006459-17006478 | MS.gene08351:CDS | 45.0% | |
CCCAAGTACATAGATGTCAC+AGG | - | chr4.1:17006104-17006123 | None:intergenic | 45.0% | |
! | AAGAAGGGGATGAGAAGTGT+AGG | + | chr4.1:17007094-17007113 | MS.gene08351:CDS | 45.0% |
! | TGTGTAGCCATCTAGCTTCA+GGG | + | chr4.1:17007067-17007086 | MS.gene08351:CDS | 45.0% |
!! | TCTAGGACTAGCTTTCCTAG+AGG | + | chr4.1:17007141-17007160 | MS.gene08351:CDS | 45.0% |
!! | TTAATAATATTAATTTCATA+TGG | - | chr4.1:17006557-17006576 | None:intergenic | 5.0% |
CGGAGTACACTGACACATGT+AGG | + | chr4.1:17008264-17008283 | MS.gene08351:intron | 50.0% | |
TAGCTTCAGGGGGCAAAGAA+GGG | + | chr4.1:17007079-17007098 | MS.gene08351:CDS | 50.0% | |
TCACGTAGCTACCACATCAG+TGG | + | chr4.1:17006662-17006681 | MS.gene08351:intron | 50.0% | |
! | GTGTAGCCATCTAGCTTCAG+GGG | + | chr4.1:17007068-17007087 | MS.gene08351:CDS | 50.0% |
! | GTGTGTAGCCATCTAGCTTC+AGG | + | chr4.1:17007066-17007085 | MS.gene08351:CDS | 50.0% |
! | TGTAGCCATCTAGCTTCAGG+GGG | + | chr4.1:17007069-17007088 | MS.gene08351:CDS | 50.0% |
!! | AAGGTCGACGTTGACGGATT+TGG | - | chr4.1:17006830-17006849 | None:intergenic | 50.0% |
!! | AGTAAGCGTGTCGTTTCCTC+TGG | - | chr4.1:17007795-17007814 | None:intergenic | 50.0% |
AAAAGAGGCGAGCACCAGCT+TGG | + | chr4.1:17008084-17008103 | MS.gene08351:CDS | 55.0% | |
AGCTTCAGGGGGCAAAGAAG+GGG | + | chr4.1:17007080-17007099 | MS.gene08351:CDS | 55.0% | |
CTAGCTTCAGGGGGCAAAGA+AGG | + | chr4.1:17007078-17007097 | MS.gene08351:CDS | 55.0% | |
CTTTGCCCCCTGAAGCTAGA+TGG | - | chr4.1:17007077-17007096 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 17005743 | 17008705 | 17005743 | ID=MS.gene08351 |
chr4.1 | mRNA | 17005743 | 17008705 | 17005743 | ID=MS.gene08351.t1;Parent=MS.gene08351 |
chr4.1 | exon | 17005743 | 17005906 | 17005743 | ID=MS.gene08351.t1.exon1;Parent=MS.gene08351.t1 |
chr4.1 | CDS | 17005743 | 17005906 | 17005743 | ID=cds.MS.gene08351.t1;Parent=MS.gene08351.t1 |
chr4.1 | exon | 17006015 | 17006122 | 17006015 | ID=MS.gene08351.t1.exon2;Parent=MS.gene08351.t1 |
chr4.1 | CDS | 17006015 | 17006122 | 17006015 | ID=cds.MS.gene08351.t1;Parent=MS.gene08351.t1 |
chr4.1 | exon | 17006233 | 17006512 | 17006233 | ID=MS.gene08351.t1.exon3;Parent=MS.gene08351.t1 |
chr4.1 | CDS | 17006233 | 17006512 | 17006233 | ID=cds.MS.gene08351.t1;Parent=MS.gene08351.t1 |
chr4.1 | exon | 17007018 | 17007202 | 17007018 | ID=MS.gene08351.t1.exon4;Parent=MS.gene08351.t1 |
chr4.1 | CDS | 17007018 | 17007202 | 17007018 | ID=cds.MS.gene08351.t1;Parent=MS.gene08351.t1 |
chr4.1 | exon | 17007749 | 17007857 | 17007749 | ID=MS.gene08351.t1.exon5;Parent=MS.gene08351.t1 |
chr4.1 | CDS | 17007749 | 17007857 | 17007749 | ID=cds.MS.gene08351.t1;Parent=MS.gene08351.t1 |
chr4.1 | exon | 17007948 | 17008105 | 17007948 | ID=MS.gene08351.t1.exon6;Parent=MS.gene08351.t1 |
chr4.1 | CDS | 17007948 | 17008105 | 17007948 | ID=cds.MS.gene08351.t1;Parent=MS.gene08351.t1 |
chr4.1 | exon | 17008462 | 17008705 | 17008462 | ID=MS.gene08351.t1.exon7;Parent=MS.gene08351.t1 |
chr4.1 | CDS | 17008462 | 17008705 | 17008462 | ID=cds.MS.gene08351.t1;Parent=MS.gene08351.t1 |
Gene Sequence |
Protein sequence |