Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08368.t1 | RHN42304.1 | 82.2 | 1174 | 159 | 7 | 2 | 1151 | 9 | 1156 | 0.00E+00 | 1826.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08368.t1 | Q9LKW9 | 58.1 | 1149 | 427 | 16 | 20 | 1149 | 30 | 1143 | 0.0e+00 | 1236.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08368.t1 | A0A396GS19 | 82.2 | 1174 | 159 | 7 | 2 | 1151 | 9 | 1156 | 0.0e+00 | 1826.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049318 | MS.gene08368 | 0.801277 | 9.72E-49 | -1.69E-46 |
| MS.gene051588 | MS.gene08368 | 0.841151 | 5.65E-58 | -1.69E-46 |
| MS.gene054920 | MS.gene08368 | 0.823915 | 1.07E-53 | -1.69E-46 |
| MS.gene059683 | MS.gene08368 | 0.818539 | 1.86E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08368.t1 | MTR_2g038400 | 80.208 | 96 | 9 | 1 | 104 | 189 | 11 | 106 | 1.13e-34 | 128 |
| MS.gene08368.t1 | MTR_2g028230 | 24.566 | 403 | 266 | 11 | 49 | 440 | 53 | 428 | 4.09e-15 | 80.1 |
| MS.gene08368.t1 | MTR_1g082440 | 24.848 | 330 | 218 | 11 | 84 | 392 | 81 | 401 | 4.15e-12 | 70.5 |
| MS.gene08368.t1 | MTR_3g055600 | 24.468 | 376 | 254 | 13 | 84 | 439 | 86 | 451 | 4.22e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08368.t1 | AT2G01980 | 58.588 | 1147 | 421 | 17 | 23 | 1150 | 33 | 1144 | 0.0 | 1294 |
| MS.gene08368.t1 | AT1G14660 | 62.880 | 757 | 241 | 7 | 6 | 747 | 9 | 740 | 0.0 | 926 |
| MS.gene08368.t1 | AT1G14660 | 58.679 | 772 | 255 | 10 | 6 | 762 | 9 | 731 | 0.0 | 854 |
| MS.gene08368.t1 | AT1G79610 | 24.396 | 414 | 281 | 12 | 32 | 431 | 37 | 432 | 3.39e-21 | 99.4 |
| MS.gene08368.t1 | AT1G54370 | 25.132 | 378 | 253 | 13 | 32 | 393 | 36 | 399 | 8.14e-17 | 85.5 |
| MS.gene08368.t1 | AT5G55470 | 23.733 | 375 | 259 | 12 | 84 | 439 | 78 | 444 | 6.70e-12 | 70.1 |
Find 225 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATGCATATTACTTATTT+TGG | 0.067979 | 4.1:+17199083 | None:intergenic |
| TTTCCCTTTCTAAATTATTT+TGG | 0.122514 | 4.1:-17204799 | MS.gene08368:CDS |
| TACCTGACATTGACAAATTT+TGG | 0.128783 | 4.1:+17198147 | None:intergenic |
| TGGAGGAACTTGTAGTAATT+TGG | 0.160820 | 4.1:+17200601 | None:intergenic |
| CAAGAGATTGCGGAAGTTTC+TGG | 0.169036 | 4.1:-17207123 | MS.gene08368:CDS |
| CAGTTAATTTCTCAAATATC+TGG | 0.190114 | 4.1:+17198363 | None:intergenic |
| TAGGAATTGGTATTGCTTTC+GGG | 0.213714 | 4.1:-17207489 | MS.gene08368:CDS |
| CAAGAAAAGTAACCTTAATT+TGG | 0.234939 | 4.1:+17209096 | None:intergenic |
| CTCATCATTGGCATTGCTAT+TGG | 0.242512 | 4.1:-17209616 | MS.gene08368:intron |
| GCAATGCAGCTGAGCATATA+TGG | 0.243154 | 4.1:-17197251 | MS.gene08368:CDS |
| CAGATATTTGAGAAATTAAC+TGG | 0.250897 | 4.1:-17198362 | MS.gene08368:CDS |
| TTGTGCTAGAAATTTGATTA+TGG | 0.252772 | 4.1:+17207605 | None:intergenic |
| AATGGAAGTTCACCAAATTA+AGG | 0.271591 | 4.1:-17209108 | MS.gene08368:intron |
| GGTATTTGGTTAATTGCTAA+TGG | 0.290985 | 4.1:-17198952 | MS.gene08368:CDS |
| GTGCCAAGTCAAATGGTATT+TGG | 0.294072 | 4.1:-17198966 | MS.gene08368:CDS |
| AACAAAGCTTACATTACTTT+TGG | 0.299230 | 4.1:-17206959 | MS.gene08368:intron |
| TTAGATGCAGTCATCTTCTT+TGG | 0.302567 | 4.1:-17209712 | MS.gene08368:CDS |
| GTAGGAATTGGTATTGCTTT+CGG | 0.306007 | 4.1:-17207490 | MS.gene08368:CDS |
| TGCGGAAGTTTCTGGTGTTT+TGG | 0.306437 | 4.1:-17207115 | MS.gene08368:CDS |
| AGACATACGAGTACGCCTTC+TGG | 0.310138 | 4.1:-17201353 | MS.gene08368:CDS |
| TCTTATTTGCTTCAACAAAA+AGG | 0.310303 | 4.1:+17198704 | None:intergenic |
| TCATCAAGGATCTTGTTATC+TGG | 0.313938 | 4.1:-17197495 | MS.gene08368:CDS |
| ATTCTTCTGCTGATAGCATT+AGG | 0.319627 | 4.1:+17200689 | None:intergenic |
| TAGGTGTCCAAGCTGCTTAT+TGG | 0.323143 | 4.1:-17200756 | MS.gene08368:CDS |
| AGGTGTCCAAGCTGCTTATT+GGG | 0.324755 | 4.1:-17200755 | MS.gene08368:CDS |
| CAATACTTTGGAAAGGAAAA+TGG | 0.327486 | 4.1:+17198391 | None:intergenic |
| CATACCATTGTTCCCATCTC+TGG | 0.330102 | 4.1:+17203613 | None:intergenic |
| AGCAGAAGAATCAATAGATT+TGG | 0.330834 | 4.1:-17200677 | MS.gene08368:CDS |
| AGGAGCTGCAACTGACAAAA+TGG | 0.337703 | 4.1:-17196480 | MS.gene08368:CDS |
| ATGTTAAATGAATATCTTCT+AGG | 0.340644 | 4.1:+17199574 | None:intergenic |
| TTCACTGTGGGCCAGTCAGC+AGG | 0.341866 | 4.1:+17201460 | None:intergenic |
| GCTATTATTCTCGTCTGGTC+AGG | 0.343297 | 4.1:-17204754 | MS.gene08368:CDS |
| CGCCTGGGATGGTTTGGAAA+TGG | 0.352549 | 4.1:-17209362 | MS.gene08368:CDS |
| AAGAAGGCAACCGAGTGATT+AGG | 0.356255 | 4.1:+17198257 | None:intergenic |
| GGAGGAACTTGTAGTAATTT+GGG | 0.360310 | 4.1:+17200602 | None:intergenic |
| GCCTGGGATGGTTTGGAAAT+GGG | 0.366855 | 4.1:-17209361 | MS.gene08368:CDS |
| CAAAATGAAAATTATTGTAT+TGG | 0.368873 | 4.1:+17206085 | None:intergenic |
| CGACAATTACATGATTTCAT+AGG | 0.370840 | 4.1:-17200472 | MS.gene08368:intron |
| TTGAGAATGCGCTCTCAAAA+AGG | 0.375667 | 4.1:+17209129 | None:intergenic |
| AGGAACTCGGGCCTGCTGAC+TGG | 0.382866 | 4.1:-17201471 | MS.gene08368:CDS |
| GTGACCACATTACAAATATA+TGG | 0.384008 | 4.1:+17198745 | None:intergenic |
| CGCATATCTTTCAAATTCAT+AGG | 0.384926 | 4.1:+17201298 | None:intergenic |
| CATCATCGCCTGGGATGGTT+TGG | 0.385198 | 4.1:-17209368 | MS.gene08368:CDS |
| TTCCAAAATTTGTCAATGTC+AGG | 0.387342 | 4.1:-17198149 | MS.gene08368:intron |
| ACTGTTGCTTTGCTCATCAT+TGG | 0.388211 | 4.1:-17209628 | MS.gene08368:CDS |
| GTCACTTTCACTATCGGTTA+AGG | 0.388684 | 4.1:-17204710 | MS.gene08368:intron |
| CACAGGAAGCTTTCCATTGA+AGG | 0.403856 | 4.1:+17198658 | None:intergenic |
| TGTCTCCCCTCTTATGTATA+CGG | 0.404891 | 4.1:+17198298 | None:intergenic |
| AAGAAGATGACTGCATCTAA+TGG | 0.407503 | 4.1:+17209715 | None:intergenic |
| TTTCATACTTTGTAAAATCA+AGG | 0.408654 | 4.1:+17201539 | None:intergenic |
| TTTACGCATGGGAGCACGTT+GGG | 0.411313 | 4.1:-17198793 | MS.gene08368:CDS |
| AGAAGGCAACCGAGTGATTA+GGG | 0.411359 | 4.1:+17198258 | None:intergenic |
| GATCGGTTCAGTGTAGGAAT+TGG | 0.414119 | 4.1:-17207502 | MS.gene08368:intron |
| TTCTGCCGGTAGAAATGTTC+AGG | 0.414745 | 4.1:+17197323 | None:intergenic |
| CGTATGTCTTTCGAATTCAT+AGG | 0.415486 | 4.1:+17201367 | None:intergenic |
| ACATTTCTACCGGCAGAATC+AGG | 0.420544 | 4.1:-17197318 | MS.gene08368:CDS |
| TTTGGTATCAGTCTTATTGT+CGG | 0.421087 | 4.1:-17209694 | MS.gene08368:CDS |
| GATATTACCTTCTAGTAAGA+AGG | 0.422710 | 4.1:+17198241 | None:intergenic |
| AAAACAGCTAAGAGGAGGTC+TGG | 0.426144 | 4.1:+17209164 | None:intergenic |
| ATTACTTAGAAACCCTCCTT+TGG | 0.427736 | 4.1:-17199115 | MS.gene08368:CDS |
| AGCTTACTTTCCCGTATGGC+TGG | 0.427819 | 4.1:-17208034 | MS.gene08368:CDS |
| AACAAGGCTACAACAGCAAC+AGG | 0.437866 | 4.1:+17207963 | None:intergenic |
| GATTCCCATGTGAAGGAAGC+AGG | 0.439090 | 4.1:+17198177 | None:intergenic |
| CTTCTATCTGTGCTTTGTGA+AGG | 0.447598 | 4.1:+17196416 | None:intergenic |
| AGTTAATTTCTCAAATATCT+GGG | 0.447928 | 4.1:+17198364 | None:intergenic |
| GCTTCTTCCGTTGAGAATGA+TGG | 0.450720 | 4.1:-17209770 | MS.gene08368:CDS |
| CCTTGAGAAGGCTGGGATGT+TGG | 0.453967 | 4.1:-17199292 | MS.gene08368:CDS |
| GTTCAAAACCTTGAGAAGGC+TGG | 0.454877 | 4.1:-17199300 | MS.gene08368:CDS |
| TCACCACTTCCCCTCATGAC+TGG | 0.456814 | 4.1:+17196306 | None:intergenic |
| CAAGAACCATCCGATAGAAA+AGG | 0.458177 | 4.1:+17207649 | None:intergenic |
| ATGAGCAAAGCAACAGTGTA+AGG | 0.460242 | 4.1:+17209634 | None:intergenic |
| AGTAATATGCATCCTATGTT+GGG | 0.461154 | 4.1:-17199075 | MS.gene08368:CDS |
| TAATTTGGGAAGTGCACGTT+AGG | 0.464021 | 4.1:+17200616 | None:intergenic |
| GAAATGACCGTATACATAAG+AGG | 0.465588 | 4.1:-17198305 | MS.gene08368:CDS |
| CAATTGAGTGCAGAGGTGTA+TGG | 0.465948 | 4.1:-17208199 | MS.gene08368:intron |
| TATCAAAACTCAAGGTCGTC+AGG | 0.466825 | 4.1:-17198222 | MS.gene08368:CDS |
| TCTAAGATCTGACCCTTCAA+TGG | 0.467624 | 4.1:-17198671 | MS.gene08368:CDS |
| TGCGTTGTCACTTTCACTAT+CGG | 0.472669 | 4.1:-17204716 | MS.gene08368:CDS |
| GTTGGATCTGACAAACTTTG+AGG | 0.472974 | 4.1:+17196548 | None:intergenic |
| TCGGTTGCCTTCTTACTAGA+AGG | 0.474188 | 4.1:-17198248 | MS.gene08368:CDS |
| GATTATGGCAAGCCAATTGA+AGG | 0.477945 | 4.1:+17207620 | None:intergenic |
| AAGTAATATGCATCCTATGT+TGG | 0.483562 | 4.1:-17199076 | MS.gene08368:CDS |
| GACAAACTTCTACTCTGGCC+AGG | 0.483877 | 4.1:+17196593 | None:intergenic |
| AATGACTTTGTTCATCCTCA+TGG | 0.485538 | 4.1:-17201418 | MS.gene08368:CDS |
| AAGAAGCTATTATTCTCGTC+TGG | 0.489581 | 4.1:-17204759 | MS.gene08368:CDS |
| TATCTGGGGAAGCAATACTT+TGG | 0.490033 | 4.1:+17198379 | None:intergenic |
| AAGGAAGGTGCCAAGTCAAA+TGG | 0.490831 | 4.1:-17198973 | MS.gene08368:CDS |
| CTTTCCCGTATGGCTGGAGT+TGG | 0.493163 | 4.1:-17208028 | MS.gene08368:CDS |
| TTCTTGGAGAGACCTTCAAT+TGG | 0.497489 | 4.1:-17207632 | MS.gene08368:CDS |
| CAGTTCATATTAGACTTCCT+TGG | 0.498001 | 4.1:-17203255 | MS.gene08368:CDS |
| ATATGGTACTCATCATCGCC+TGG | 0.498045 | 4.1:-17209378 | MS.gene08368:CDS |
| TCCCATTTCCAAACCATCCC+AGG | 0.498532 | 4.1:+17209360 | None:intergenic |
| TGGTTGACAAACTTCTACTC+TGG | 0.500880 | 4.1:+17196588 | None:intergenic |
| TTCTATCTGTGCTTTGTGAA+GGG | 0.506405 | 4.1:+17196417 | None:intergenic |
| ATATCCAAAATAATTTAGAA+AGG | 0.507755 | 4.1:+17204795 | None:intergenic |
| CTTTGATGTGGCACAATGGT+TGG | 0.508606 | 4.1:+17196530 | None:intergenic |
| AAGAACCATCCGATAGAAAA+GGG | 0.509455 | 4.1:+17207650 | None:intergenic |
| CAATGCAGCTGAGCATATAT+GGG | 0.509952 | 4.1:-17197250 | MS.gene08368:CDS |
| AATGGAAAGCTTCCTGTGGC+AGG | 0.510124 | 4.1:-17198653 | MS.gene08368:intron |
| TTCAAAACCTTGAGAAGGCT+GGG | 0.510199 | 4.1:-17199299 | MS.gene08368:CDS |
| CTTGGAGATGATGAGGAACT+CGG | 0.514506 | 4.1:-17201484 | MS.gene08368:CDS |
| ATGAACAAAGTCATTTAAGC+AGG | 0.515276 | 4.1:+17201426 | None:intergenic |
| GCAGCCCTGCTTCCTTCACA+TGG | 0.515748 | 4.1:-17198182 | MS.gene08368:CDS |
| CTATTATTCTCGTCTGGTCA+GGG | 0.517184 | 4.1:-17204753 | MS.gene08368:CDS |
| TTGGGAAGCTTAACCAAAGG+AGG | 0.518032 | 4.1:+17199102 | None:intergenic |
| TTACATACTTCACTGTGGAC+AGG | 0.518923 | 4.1:-17200552 | MS.gene08368:CDS |
| CTAATGAAGAAATTATTGTC+AGG | 0.519047 | 4.1:-17196358 | MS.gene08368:CDS |
| AATGGCTAATAAAGCATTGG+AGG | 0.519369 | 4.1:-17201518 | MS.gene08368:CDS |
| AACATAGTGCTATTATGAGT+TGG | 0.519544 | 4.1:-17197346 | MS.gene08368:CDS |
| ACATCTTCATGATGTTGTCC+AGG | 0.521338 | 4.1:-17199253 | MS.gene08368:intron |
| AGGTAGCGGTCTAGCACGAT+TGG | 0.523450 | 4.1:+17196568 | None:intergenic |
| TCTGTTTATCCTGATTCTGC+CGG | 0.523932 | 4.1:+17197309 | None:intergenic |
| TGTGAAGGAAGCAGGGCTGC+TGG | 0.525238 | 4.1:+17198185 | None:intergenic |
| TTTCTAGCACAAGTTTCACT+TGG | 0.526090 | 4.1:-17207594 | MS.gene08368:CDS |
| GTGTCTCGATGCATTGTAGT+TGG | 0.526694 | 4.1:-17204829 | MS.gene08368:CDS |
| GAAATATATCTCTTCACTGT+GGG | 0.526784 | 4.1:+17201448 | None:intergenic |
| GATGGTAGAGCACCCAACAT+AGG | 0.526933 | 4.1:+17199063 | None:intergenic |
| TATCCAAAATAATTTAGAAA+GGG | 0.528118 | 4.1:+17204796 | None:intergenic |
| TAACCAAATACCATTTGACT+TGG | 0.528639 | 4.1:+17198963 | None:intergenic |
| TGAAATGGCTAATAAAGCAT+TGG | 0.529135 | 4.1:-17201521 | MS.gene08368:CDS |
| CCAACATCCCAGCCTTCTCA+AGG | 0.529319 | 4.1:+17199292 | None:intergenic |
| AAATTAAGCACAATAATTGA+AGG | 0.531293 | 4.1:-17207918 | MS.gene08368:CDS |
| AAATGTTTCCAGTCACATAG+TGG | 0.531641 | 4.1:+17200643 | None:intergenic |
| GGGGAATCCGTGATGAATGA+TGG | 0.533122 | 4.1:-17207897 | MS.gene08368:CDS |
| GTAGCCTTGTTGAAAGAACT+TGG | 0.533598 | 4.1:-17207951 | MS.gene08368:CDS |
| GGCTTGACACTTTACAAGGA+AGG | 0.534192 | 4.1:-17198988 | MS.gene08368:CDS |
| AAATGACCGTATACATAAGA+GGG | 0.537678 | 4.1:-17198304 | MS.gene08368:CDS |
| AATTGAATTGACTCCAGAGA+TGG | 0.538356 | 4.1:-17203626 | MS.gene08368:CDS |
| TATTCATTTAACATACCCTC+AGG | 0.541649 | 4.1:-17199565 | MS.gene08368:intron |
| CTTGTCCAGGGTGGCTATTG+TGG | 0.543196 | 4.1:-17207679 | MS.gene08368:intron |
| ATACAGCTTACTTTCCCGTA+TGG | 0.543231 | 4.1:-17208038 | MS.gene08368:intron |
| AAAATGGACATTGGAGTGAA+GGG | 0.543464 | 4.1:-17196464 | MS.gene08368:CDS |
| GAACTCGAGTGGCATGCAAA+AGG | 0.544491 | 4.1:+17209656 | None:intergenic |
| CAAAATGGACATTGGAGTGA+AGG | 0.546225 | 4.1:-17196465 | MS.gene08368:CDS |
| ATGGTCGAAAGCACAACACC+TGG | 0.546683 | 4.1:+17208153 | None:intergenic |
| TAGTGAACTTGGAGATGATG+AGG | 0.547896 | 4.1:-17201491 | MS.gene08368:CDS |
| AAACAATAGTTTGTCTGCAA+AGG | 0.549172 | 4.1:-17197273 | MS.gene08368:CDS |
| GCATCTCCCAATAAGCAGCT+TGG | 0.549177 | 4.1:+17200749 | None:intergenic |
| AATTAAGCACAATAATTGAA+GGG | 0.550093 | 4.1:-17207917 | MS.gene08368:CDS |
| GCACAAATGATCTTACTAGC+TGG | 0.553176 | 4.1:-17208177 | MS.gene08368:CDS |
| GTACTCATCATCGCCTGGGA+TGG | 0.554419 | 4.1:-17209373 | MS.gene08368:CDS |
| AGGAAGCAGGGCTGCTGGTG+CGG | 0.555163 | 4.1:+17198190 | None:intergenic |
| TAATAGCACTATGTTGTCTA+CGG | 0.556493 | 4.1:+17197354 | None:intergenic |
| GAATAAGTTATCATCAGATA+AGG | 0.557229 | 4.1:-17203229 | MS.gene08368:intron |
| TCGATGGCAACATATTTGAC+TGG | 0.561700 | 4.1:+17200581 | None:intergenic |
| CATCTGAGCCACTATGTGAC+TGG | 0.562752 | 4.1:-17200651 | MS.gene08368:CDS |
| ATTGGGAGATGCTTGATGAA+AGG | 0.562803 | 4.1:-17200738 | MS.gene08368:CDS |
| GCGTGGCTTGACACTTTACA+AGG | 0.562824 | 4.1:-17198992 | MS.gene08368:CDS |
| ATTGAATTGACTCCAGAGAT+GGG | 0.562911 | 4.1:-17203625 | MS.gene08368:CDS |
| AATTGCTAATGGAGTGGTGA+AGG | 0.564103 | 4.1:-17198941 | MS.gene08368:intron |
| ACAGGAAGCTTTCCATTGAA+GGG | 0.564362 | 4.1:+17198659 | None:intergenic |
| ATGCGAGTACGCCTTCTGAA+TGG | 0.564762 | 4.1:-17201280 | MS.gene08368:intron |
| AGTGGTTCACGAACTGAAGA+TGG | 0.564992 | 4.1:+17199045 | None:intergenic |
| TTCTGCTGTAGGAAAGTCAT+GGG | 0.565333 | 4.1:-17204884 | MS.gene08368:intron |
| CTTGTTTCAGTCAAATCAGA+AGG | 0.567347 | 4.1:-17196500 | MS.gene08368:CDS |
| GTTCTGCTGTAGGAAAGTCA+TGG | 0.567976 | 4.1:-17204885 | MS.gene08368:intron |
| ATGATCTTACTAGCTGGTCC+AGG | 0.568671 | 4.1:-17208171 | MS.gene08368:CDS |
| GGTTCTATTCTGCATTTGCA+AGG | 0.569057 | 4.1:-17207004 | MS.gene08368:CDS |
| ATGATAACTTATTCATGCCA+AGG | 0.569926 | 4.1:+17203238 | None:intergenic |
| TCCTTTGTATCACTTACAAG+TGG | 0.573287 | 4.1:+17199027 | None:intergenic |
| TTCAGGGTTATTACATGCTG+CGG | 0.574831 | 4.1:-17197396 | MS.gene08368:CDS |
| TCTGACAAACTTTGAGGTAG+CGG | 0.575869 | 4.1:+17196554 | None:intergenic |
| GAATCAGGATAAACAGAGCT+CGG | 0.576296 | 4.1:-17197303 | MS.gene08368:CDS |
| GGGAATCCGTGATGAATGAT+GGG | 0.576373 | 4.1:-17207896 | MS.gene08368:intron |
| TTGGAGATGATGAGGAACTC+GGG | 0.577198 | 4.1:-17201483 | MS.gene08368:CDS |
| ATACTTCACTGTGGACAGGT+TGG | 0.578021 | 4.1:-17200548 | MS.gene08368:CDS |
| GAAGGTAATATCAAAACTCA+AGG | 0.582183 | 4.1:-17198230 | MS.gene08368:CDS |
| AGTGGAGTTATTATAGCTGA+AGG | 0.583086 | 4.1:-17205878 | MS.gene08368:CDS |
| ATGTTTGCATACCATTCAGA+AGG | 0.585121 | 4.1:+17201269 | None:intergenic |
| TCTGATTTGACTGAAACAAG+TGG | 0.588549 | 4.1:+17196503 | None:intergenic |
| CTCGTCTGGTCAGGGTTGCG+AGG | 0.592279 | 4.1:-17204745 | MS.gene08368:CDS |
| TTTATAGGCTCAAGAGATTG+CGG | 0.593853 | 4.1:-17207133 | MS.gene08368:intron |
| ATATGTTCAAAACCTTGAGA+AGG | 0.595089 | 4.1:-17199304 | MS.gene08368:CDS |
| AAGCTTCGATTCCCATGTGA+AGG | 0.595325 | 4.1:+17198170 | None:intergenic |
| ATTAAGCACAATAATTGAAG+GGG | 0.595881 | 4.1:-17207916 | MS.gene08368:CDS |
| ATCTGGTTGAAACTAGAGCA+AGG | 0.597676 | 4.1:-17197478 | MS.gene08368:CDS |
| ATTGTCGTCGAGCAATTCTG+TGG | 0.599392 | 4.1:+17200488 | None:intergenic |
| TATGGTACTCATCATCGCCT+GGG | 0.600996 | 4.1:-17209377 | MS.gene08368:CDS |
| TGGTTTGTTTAGCGTTCGAG+TGG | 0.601861 | 4.1:-17203655 | MS.gene08368:intron |
| AAAGTAGCCATACCTGCCAC+AGG | 0.603956 | 4.1:+17198641 | None:intergenic |
| GCAACTGACAAAATGGACAT+TGG | 0.604194 | 4.1:-17196473 | MS.gene08368:CDS |
| GTTGGCCTGAACATTTCTAC+CGG | 0.605391 | 4.1:-17197328 | MS.gene08368:CDS |
| TGGGAAGCTTAACCAAAGGA+GGG | 0.606880 | 4.1:+17199103 | None:intergenic |
| GACTCCAGAGATGGGAACAA+TGG | 0.609199 | 4.1:-17203617 | MS.gene08368:intron |
| GTTAATTTCTCAAATATCTG+GGG | 0.609819 | 4.1:+17198365 | None:intergenic |
| GGCACCAAGTTCTTTCAACA+AGG | 0.610772 | 4.1:+17207947 | None:intergenic |
| ACAAACTTCTACTCTGGCCA+GGG | 0.614534 | 4.1:+17196594 | None:intergenic |
| TGGCGAAAAGATAGTGTACT+CGG | 0.616707 | 4.1:+17196326 | None:intergenic |
| ACCACTTGTAAGTGATACAA+AGG | 0.617639 | 4.1:-17199028 | MS.gene08368:CDS |
| GGGGAAGCAATACTTTGGAA+AGG | 0.618372 | 4.1:+17198384 | None:intergenic |
| TTGTTTGCATACCATCCAGA+AGG | 0.620032 | 4.1:+17201338 | None:intergenic |
| TGTTGCTCCATCATTCTCAA+CGG | 0.620837 | 4.1:+17209763 | None:intergenic |
| GCTGAGCATATATGGGAGCA+TGG | 0.622094 | 4.1:-17197243 | MS.gene08368:intron |
| TTGGTTAATTGCTAATGGAG+TGG | 0.624617 | 4.1:-17198947 | MS.gene08368:CDS |
| ATTCCCATGTGAAGGAAGCA+GGG | 0.629890 | 4.1:+17198178 | None:intergenic |
| ATACGAGTACGCCTTCTGGA+TGG | 0.629962 | 4.1:-17201349 | MS.gene08368:CDS |
| AATTGAAATCCCTAATCACT+CGG | 0.631225 | 4.1:-17198267 | MS.gene08368:CDS |
| AAGTATGTAACTAACTTCGA+TGG | 0.631635 | 4.1:+17200565 | None:intergenic |
| AAGACCATATATTTGTAATG+TGG | 0.635480 | 4.1:-17198749 | MS.gene08368:CDS |
| TCTGGTTGAAACTAGAGCAA+GGG | 0.643646 | 4.1:-17197477 | MS.gene08368:CDS |
| ATGGCAACATATTTGACTGG+AGG | 0.644664 | 4.1:+17200584 | None:intergenic |
| AAATGGACATTGGAGTGAAG+GGG | 0.653817 | 4.1:-17196463 | MS.gene08368:CDS |
| TTGTCGTCGAGCAATTCTGT+GGG | 0.654214 | 4.1:+17200489 | None:intergenic |
| GGAAATATATCTCTTCACTG+TGG | 0.655927 | 4.1:+17201447 | None:intergenic |
| AAAGTACCCATCATTCATCA+CGG | 0.656493 | 4.1:+17207890 | None:intergenic |
| AAGGAAATGATGAAATTGCG+TGG | 0.657545 | 4.1:-17199009 | MS.gene08368:CDS |
| CAGCCCTGCTTCCTTCACAT+GGG | 0.658162 | 4.1:-17198181 | MS.gene08368:CDS |
| CATACGCATAGAGAAGCAAG+AGG | 0.658891 | 4.1:+17204857 | None:intergenic |
| GATAGAAGAGTACATCGTGA+AGG | 0.664289 | 4.1:-17196401 | MS.gene08368:CDS |
| CTTCAATGGAAAGCTTCCTG+TGG | 0.665620 | 4.1:-17198657 | MS.gene08368:CDS |
| TGTCATTAATGAAAGTGTTG+TGG | 0.669302 | 4.1:-17199619 | MS.gene08368:CDS |
| ACGACTTTGATGTGGCACAA+TGG | 0.669564 | 4.1:+17196526 | None:intergenic |
| GATGGTATGCAAACAAGTGG+TGG | 0.673561 | 4.1:-17201331 | MS.gene08368:CDS |
| CATTAATGAAAGTGTTGTGG+AGG | 0.675311 | 4.1:-17199616 | MS.gene08368:CDS |
| CATGGTGCATCTGAAAGTGA+TGG | 0.675704 | 4.1:-17201400 | MS.gene08368:CDS |
| GGTCTTTATGAAGTGCTGAG+TGG | 0.681700 | 4.1:-17198772 | MS.gene08368:CDS |
| AGATATTTGAGAAATTAACT+GGG | 0.685392 | 4.1:-17198361 | MS.gene08368:CDS |
| CTGGATGGTATGCAAACAAG+TGG | 0.696055 | 4.1:-17201334 | MS.gene08368:CDS |
| AACAGTGTAAGGAACTCGAG+TGG | 0.703158 | 4.1:+17209645 | None:intergenic |
| GTTAGTTACATACTTCACTG+TGG | 0.714802 | 4.1:-17200557 | MS.gene08368:CDS |
| AATGACCGTATACATAAGAG+GGG | 0.717659 | 4.1:-17198303 | MS.gene08368:CDS |
| ACAAGTGGACGACTTTGATG+TGG | 0.719152 | 4.1:+17196518 | None:intergenic |
| TCACTTTCAGATGCACCATG+AGG | 0.725058 | 4.1:+17201403 | None:intergenic |
| GAAGTCTAATATGAACTGTG+TGG | 0.756559 | 4.1:+17203260 | None:intergenic |
| TGTCTACGGAAAGATTTACG+AGG | 0.757206 | 4.1:+17197368 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 17196319 | 17209803 | 17196319 | ID=MS.gene08368 |
| chr4.1 | mRNA | 17196319 | 17209803 | 17196319 | ID=MS.gene08368.t1;Parent=MS.gene08368 |
| chr4.1 | exon | 17209617 | 17209803 | 17209617 | ID=MS.gene08368.t1.exon1;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17209617 | 17209803 | 17209617 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17209351 | 17209401 | 17209351 | ID=MS.gene08368.t1.exon2;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17209351 | 17209401 | 17209351 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17209109 | 17209200 | 17209109 | ID=MS.gene08368.t1.exon3;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17209109 | 17209200 | 17209109 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17208131 | 17208208 | 17208131 | ID=MS.gene08368.t1.exon4;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17208131 | 17208208 | 17208131 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17207897 | 17208054 | 17207897 | ID=MS.gene08368.t1.exon5;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17207897 | 17208054 | 17207897 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17207591 | 17207692 | 17207591 | ID=MS.gene08368.t1.exon6;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17207591 | 17207692 | 17207591 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17207396 | 17207513 | 17207396 | ID=MS.gene08368.t1.exon7;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17207396 | 17207513 | 17207396 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17207096 | 17207148 | 17207096 | ID=MS.gene08368.t1.exon8;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17207096 | 17207148 | 17207096 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17206960 | 17207025 | 17206960 | ID=MS.gene08368.t1.exon9;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17206960 | 17207025 | 17206960 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17206083 | 17206127 | 17206083 | ID=MS.gene08368.t1.exon10;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17206083 | 17206127 | 17206083 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17205846 | 17205898 | 17205846 | ID=MS.gene08368.t1.exon11;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17205846 | 17205898 | 17205846 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17204711 | 17204895 | 17204711 | ID=MS.gene08368.t1.exon12;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17204711 | 17204895 | 17204711 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17203618 | 17203665 | 17203618 | ID=MS.gene08368.t1.exon13;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17203618 | 17203665 | 17203618 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17203230 | 17203337 | 17203230 | ID=MS.gene08368.t1.exon14;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17203230 | 17203337 | 17203230 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17201281 | 17201569 | 17201281 | ID=MS.gene08368.t1.exon15;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17201281 | 17201569 | 17201281 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17200473 | 17200775 | 17200473 | ID=MS.gene08368.t1.exon16;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17200473 | 17200775 | 17200473 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17199566 | 17199663 | 17199566 | ID=MS.gene08368.t1.exon17;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17199566 | 17199663 | 17199566 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17199254 | 17199385 | 17199254 | ID=MS.gene08368.t1.exon18;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17199254 | 17199385 | 17199254 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17198942 | 17199151 | 17198942 | ID=MS.gene08368.t1.exon19;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17198942 | 17199151 | 17198942 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17198654 | 17198860 | 17198654 | ID=MS.gene08368.t1.exon20;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17198654 | 17198860 | 17198654 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17198150 | 17198420 | 17198150 | ID=MS.gene08368.t1.exon21;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17198150 | 17198420 | 17198150 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17197244 | 17197539 | 17197244 | ID=MS.gene08368.t1.exon22;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17197244 | 17197539 | 17197244 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| chr4.1 | exon | 17196319 | 17196624 | 17196319 | ID=MS.gene08368.t1.exon23;Parent=MS.gene08368.t1 |
| chr4.1 | CDS | 17196319 | 17196624 | 17196319 | ID=cds.MS.gene08368.t1;Parent=MS.gene08368.t1 |
| Gene Sequence |
| Protein sequence |
